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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited versus non-edited samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with AD stages

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene


Gene summary for LURAP1

check button Gene summary
Gene informationGene symbol

LURAP1

Gene ID

541468

Gene nameleucine rich adaptor protein 1
SynonymsC1orf190|LRAP35a|LRP35A
Cytomap

1p34.1

Type of geneprotein-coding
Descriptionleucine rich adaptor protein 1NF-kappa-B activator C1orf190leucine repeat adapter protein 35Aleucine repeat adaptor protein 35a
Modification date20200313
UniProtAcc

Q96LR2,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
LURAP1

GO:0001819

positive regulation of cytokine production

21048106

LURAP1

GO:0043123

positive regulation of I-kappaB kinase/NF-kappaB signaling

21048106


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RNA A-to-I events for LURAP1

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_120240(46220453, +), ADediting_120241(46220469, +), ADediting_120242(46220474, +), ADediting_120243(46220478, +), ADediting_120244(46220491, +), ADediting_120245(46220494, +), ADediting_120246(46220499, +), ADediting_120247(46220504, +), ADediting_120248(46220509, +), ADediting_120249(46220516, +), ADediting_120250(46220529, +), ADediting_120251(46220530, +), ADediting_120252(46220563, +), ADediting_120253(46220569, +), ADediting_120254(46220630, +), ADediting_120255(46220650, +), ADediting_120256(46220661, +), ADediting_120257(46220675, +), ADediting_120258(46220676, +),

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RNA editing positional annotations for LURAP1 using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_120240chr1_46220453_+UTR3
ADediting_120241chr1_46220469_+UTR3
ADediting_120242chr1_46220474_+UTR3
ADediting_120243chr1_46220478_+UTR3
ADediting_120244chr1_46220491_+UTR3
ADediting_120245chr1_46220494_+UTR3
ADediting_120246chr1_46220499_+UTR3
ADediting_120247chr1_46220504_+UTR3
ADediting_120248chr1_46220509_+UTR3
ADediting_120249chr1_46220516_+UTR3
ADediting_120250chr1_46220529_+UTR3
ADediting_120251chr1_46220530_+UTR3
ADediting_120252chr1_46220563_+UTR3
ADediting_120253chr1_46220569_+UTR3
ADediting_120254chr1_46220630_+UTR3
ADediting_120255chr1_46220650_+UTR3
ADediting_120256chr1_46220661_+UTR3
ADediting_120257chr1_46220675_+UTR3
ADediting_120258chr1_46220676_+UTR3

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_120240chr1_46220453_+SINEAluName=AluJb
ADediting_120241chr1_46220469_+SINEAluName=AluJb
ADediting_120242chr1_46220474_+SINEAluName=AluJb
ADediting_120243chr1_46220478_+SINEAluName=AluJb
ADediting_120244chr1_46220491_+SINEAluName=AluJb
ADediting_120245chr1_46220494_+SINEAluName=AluJb
ADediting_120246chr1_46220499_+SINEAluName=AluJb
ADediting_120247chr1_46220504_+SINEAluName=AluJb
ADediting_120248chr1_46220509_+SINEAluName=AluJb
ADediting_120249chr1_46220516_+SINEAluName=AluJb
ADediting_120250chr1_46220529_+SINEAluName=AluJb
ADediting_120251chr1_46220530_+SINEAluName=AluJb
ADediting_120252chr1_46220563_+SINEAluName=AluJb
ADediting_120253chr1_46220569_+SINEAluName=AluJb
ADediting_120254chr1_46220630_+SINEAluName=AluJb
ADediting_120255chr1_46220650_+SINEAluName=AluJb
ADediting_120256chr1_46220661_+SINEAluName=AluJb
ADediting_120257chr1_46220675_+SINEAluName=AluJb
ADediting_120258chr1_46220676_+SINEAluName=AluJb

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RNA A-to-I editing events in the alternative splicing sites for LURAP1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for LURAP1

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
Soverview
Soverview

check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Soverview
Soverview
ADeditome IDChrPositoingSkipped exonENSGENSTs

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Protein coding region RNA A-to-I editings for LURAP1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for LURAP1

check buttonRNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
all structure

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_120240chr1_46220453_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-340-3pchr146220447462204537mer-m84622043346220454146-18.54
ADediting_120240chr1_46220453_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-6827-3pchr146220447462204537mer-m84622043446220454140-14.58
ADediting_120241chr1_46220469_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-196a-3pchr146220464462204707mer-m84622044946220471151-16.17
ADediting_120242chr1_46220474_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-1343-3pchr146220469462204757mer-m84622045446220476146-16.62
ADediting_120242chr1_46220474_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-6742-3pchr146220468462204758mer-1a4622045646220475140-14.83
ADediting_120242chr1_46220474_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-6783-3pchr146220469462204757mer-m84622045546220476140-14.55
ADediting_120242chr1_46220474_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-6861-5pchr146220467462204737mer-m84622044946220474145-22.37
ADediting_120245chr1_46220494_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-591chr146220489462204968mer-1a4622047546220496145-18.83
ADediting_120245chr1_46220494_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-6808-3pchr146220492462204987mer-m84622048046220499157-20.96
ADediting_120245chr1_46220494_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-6872-3pchr146220487462204937mer-m84622047546220494148-18.7
ADediting_120251chr1_46220530_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-1199-5pchr146220523462205297mer-m84622051146220530156-29.47
ADediting_120251chr1_46220530_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-6078chr146220526462205338mer-1a4622051446220533152-22.59
ADediting_120251chr1_46220530_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-6751-3pchr146220523462205297mer-m84622051046220530141-13.5
ADediting_120255chr1_46220650_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-3940-3pchr146220647462206537mer-m84622063146220654146-22.05
ADediting_120258chr1_46220676_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-1199-5pchr146220669462206757mer-m84622065746220676156-28.57
ADediting_120258chr1_46220676_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-125a-5pchr146220671462206777mer-m84622065546220678147-22.65
ADediting_120258chr1_46220676_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-125b-5pchr146220671462206777mer-m84622065746220678150-22.71
ADediting_120258chr1_46220676_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-331-3pchr146220673462206797mer-1a4622065946220679145-25.53
ADediting_120258chr1_46220676_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-4319chr146220671462206777mer-m84622066246220678149-21.73
ADediting_120258chr1_46220676_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-6751-3pchr146220669462206757mer-m84622065646220676141-13.15

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_120240chr1_46220453_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-10a-5pchr146220450462204567mer-m84622043746220457142-12.48
ADediting_120240chr1_46220453_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-10b-5pchr146220450462204567mer-m84622043146220457144-12.24
ADediting_120240chr1_46220453_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-339-5pchr146220449462204557mer-m84622043546220456151-17.78
ADediting_120240chr1_46220453_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-4725-5pchr146220451462204577mer-m84622043846220458140-16.24
ADediting_120240chr1_46220453_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-504-5pchr146220451462204577mer-m84622043946220458147-18.15
ADediting_120240chr1_46220453_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-5699-3pchr146220448462204547mer-m84622043446220455141-16.39
ADediting_120242chr1_46220474_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-6774-5pchr146220469462204757mer-1a4622044746220475141-31.28
ADediting_120246chr1_46220499_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-4679chr146220493462204997mer-m84622047946220500145-15.98
ADediting_120248chr1_46220509_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-17-3pchr146220503462205097mer-m84622048946220510150-16.44
ADediting_120253chr1_46220569_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-6811-3pchr146220567462205748mer-1a4622055446220574150-18.56
ADediting_120254chr1_46220630_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-454-5pchr146220626462206327mer-m84622061246220633145-15.63
ADediting_120254chr1_46220630_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-652-5pchr146220628462206347mer-m84622061146220635140-11.21
ADediting_120255chr1_46220650_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-5189-5pchr146220644462206507mer-m84622062746220651151-22.48
ADediting_120255chr1_46220650_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-612chr146220644462206507mer-m84622062746220651150-25.24
ADediting_120255chr1_46220650_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-661chr146220646462206527mer-m84622062846220653142-20.62
ADediting_120255chr1_46220650_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-6860chr146220644462206507mer-m84622063146220651150-21.8
ADediting_120255chr1_46220650_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-939-3pchr146220645462206517mer-m84622063246220652140-15.63
ADediting_120257chr1_46220675_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-623chr146220673462206797mer-m84622065646220680148-27.2
ADediting_120258chr1_46220676_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-188-5pchr146220674462206807mer-m84622066146220681151-19.52
ADediting_120258chr1_46220676_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-623chr146220673462206797mer-m84622065646220680148-27.2
ADediting_120258chr1_46220676_+ENSG00000171357.6ENST00000371980.4LURAP1-201hsa-miR-6866-3pchr146220674462206807mer-m84622066046220681145-19.09

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for LURAP1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000371980.4protein_codingSoverviewSoverview

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
ADediting_120240ENST00000371980.4chr1_46220453_+1046-696.50-697.20-714.50
ADediting_120241ENST00000371980.4chr1_46220469_+1062-697.50-697.20-714.50
ADediting_120242ENST00000371980.4chr1_46220474_+1067-699.10-697.20-714.50
ADediting_120243ENST00000371980.4chr1_46220478_+1071-697.10-697.20-714.50
ADediting_120244ENST00000371980.4chr1_46220491_+1084-698.70-697.20-714.50
ADediting_120245ENST00000371980.4chr1_46220494_+1087-698.60-697.20-714.50
ADediting_120246ENST00000371980.4chr1_46220499_+1092-696.50-697.20-714.50
ADediting_120247ENST00000371980.4chr1_46220504_+1097-699.50-697.20-714.50
ADediting_120248ENST00000371980.4chr1_46220509_+1102-697.10-697.20-714.50
ADediting_120249ENST00000371980.4chr1_46220516_+1109-699.00-697.20-714.50
ADediting_120250ENST00000371980.4chr1_46220529_+1122-697.90-697.20-714.50
ADediting_120251ENST00000371980.4chr1_46220530_+1123-703.30-697.20-714.50
ADediting_120252ENST00000371980.4chr1_46220563_+1156-700.40-697.20-714.50
ADediting_120253ENST00000371980.4chr1_46220569_+1162-696.90-697.20-714.50
ADediting_120254ENST00000371980.4chr1_46220630_+1223-697.40-697.20-714.50
ADediting_120255ENST00000371980.4chr1_46220650_+1243-696.50-697.20-714.50
ADediting_120256ENST00000371980.4chr1_46220661_+1254-697.20-697.20-714.50
ADediting_120257ENST00000371980.4chr1_46220675_+1268-700.60-697.20-714.50
ADediting_120258ENST00000371980.4chr1_46220676_+1269-699.10-697.20-714.50

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for LURAP1

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
CERADediting_120243chr1_46220478_+0.1824242342768530.1094540121627180.0001126081375362350.310090936031520.01525863295942070.197790386515414
CERADediting_120252chr1_46220563_+0.0003326597382535780.2891305476873165.71388240601706e-100.478833523931930.001612585457850640.255345786019546
CERADediting_120253chr1_46220569_+0.02669830364978790.1809450486686584.67688399854047e-070.3976712564458820.01751282695032670.193758910815906

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFC7.25772572523219e-480.7049205685538743.33948854534297e-330.6116872719893361.91221325881772e-170.457544977343634
AC4.41688826355377e-110.4011262863849587.71533661541464e-130.432863424694510.1783567794628790.085390268935994
PCC2.83261027319811e-200.6027279117668992.68078759233792e-210.6154963964410060.0003428356154394330.256419409384654
CER4.71660751839175e-520.88895546466921.26694471540984e-320.7852901775172760.008556986902826030.213976178162217
TCX1.05035825319498e-190.6545207841005220.00150760490579430.2568789747880831.58702305267446e-150.59150366129722
FP4.02080318518906e-350.7625574759228651.21343978915432e-200.624554337330126.66035359605781e-120.48525711557133
IFG8.28772077639786e-050.705091697380890.001780843743330220.5930671568821510.004139272206159150.553040165673004
PG3.21764859864391e-300.713316513490964.21624405859283e-250.6649220874113680.0191784299137260.171607973693088
STG4.28396376955712e-170.761265379683381.97821819779522e-110.6512581396048150.0002795897333967970.386702233676023

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Relation with AD stages for LURAP1

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.
CERADediting_120252chr1_46220563_+0.000137051051257260.358824653861745
CERADediting_120253chr1_46220569_+0.001349405125976810.304606774043601
TCXADediting_120252chr1_46220563_+0.0007721674592074620.32169048169233

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.
CER0.0002310044605065910.34728963058556
TCX7.12926919697342e-070.459752651147605

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RelatedDrugs for LURAP1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for LURAP1

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource