ADeditome: functional annotation of RNA A-to-I editing in AD

Gene summary for ZCCHC17

Gene summary

Gene information	Gene symbol	ZCCHC17
	Gene ID	51538
	Gene name	zinc finger CCHC-type containing 17
	Synonyms	HSPC251\|PS1D\|pNO40
	Cytomap	1p35.2
	Type of gene	protein-coding
	Description	nucleolar protein of 40 kDanucleolar protein 40pnn-interacting nucleolar proteinputative S1 RNA binding domain proteinzinc finger CCHC domain-containing protein 17zinc finger, CCHC domain containing 17
	Modification date	20200313
	UniProtAcc	Q9NP64,
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for ZCCHC17

RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).

RNA editing frequencies across three data sets.

The number of RNA A-to-I editing events in different types of transcripts (# event, percentage).

RNA A-to-I editing events in AD.

ADediting_97467(31298449, +), ADediting_97468(31298486, +), ADediting_97469(31298587, +), ADediting_97470(31298594, +), ADediting_97471(31298619, +), ADediting_97472(31298620, +), ADediting_97473(31298637, +), ADediting_97474(31300172, +), ADediting_97475(31300189, +), ADediting_97476(31300198, +), ADediting_97477(31300225, +), ADediting_97478(31300269, +), ADediting_97479(31300280, +), ADediting_97480(31300295, +), ADediting_97481(31300342, +), ADediting_97482(31300678, +), ADediting_97483(31300789, +), ADediting_97484(31300842, +), ADediting_97485(31300848, +), ADediting_97486(31300883, +), ADediting_97487(31301966, +), ADediting_97488(31301972, +), ADediting_97489(31302003, +), ADediting_97490(31302033, +), ADediting_97491(31302069, +), ADediting_97492(31302081, +), ADediting_97493(31302099, +), ADediting_97494(31302107, +), ADediting_97495(31302140, +), ADediting_97496(31302157, +), ADediting_97497(31302185, +), ADediting_97498(31303022, +), ADediting_97499(31303023, +), ADediting_97500(31303075, +), ADediting_97501(31303096, +), ADediting_97502(31303207, +), ADediting_97503(31303264, +), ADediting_97504(31307849, +), ADediting_97505(31311544, +), ADediting_97506(31311555, +), ADediting_97507(31311578, +), ADediting_97508(31311583, +), ADediting_97509(31311600, +), ADediting_97510(31311620, +), ADediting_97511(31311633, +), ADediting_97512(31311634, +), ADediting_97513(31311904, +), ADediting_97514(31311975, +), ADediting_97515(31311998, +), ADediting_97516(31311999, +), ADediting_97517(31312050, +), ADediting_97518(31312095, +), ADediting_97519(31321511, +), ADediting_97520(31321705, +), ADediting_97521(31323528, +), ADediting_97522(31324195, +), ADediting_97523(31324217, +), ADediting_97524(31324218, +), ADediting_97525(31324227, +), ADediting_97526(31324241, +), ADediting_97527(31324253, +), ADediting_97528(31324264, +), ADediting_97529(31324291, +), ADediting_97530(31325908, +), ADediting_97531(31328391, +), ADediting_97532(31328397, +), ADediting_97533(31328428, +), ADediting_97534(31331668, +), ADediting_97535(31331711, +), ADediting_97536(31331716, +), ADediting_97537(31331739, +), ADediting_97538(31331741, +), ADediting_97539(31331862, +), ADediting_97540(31331872, +), ADediting_97541(31331884, +), ADediting_97542(31332689, +), ADediting_97543(31332721, +), ADediting_97544(31332725, +), ADediting_97545(31332726, +), ADediting_97546(31332747, +), ADediting_97547(31332748, +), ADediting_97548(31332751, +), ADediting_97549(31332756, +), ADediting_97550(31332761, +), ADediting_97551(31332779, +), ADediting_97552(31332787, +), ADediting_97553(31332805, +), ADediting_97554(31332822, +), ADediting_97555(31332896, +), ADediting_97556(31349086, +), ADediting_97557(31349087, +), ADediting_97558(31349110, +), ADediting_97559(31349405, +), ADediting_97560(31349424, +), ADediting_97561(31349430, +), ADediting_97562(31349431, +), ADediting_97563(31349448, +), ADediting_97564(31349460, +), ADediting_97565(31349472, +), ADediting_97566(31349476, +), ADediting_97567(31349542, +), ADediting_97568(31349625, +), ADediting_97569(31350693, +), ADediting_97570(31350703, +), ADediting_97571(31350729, +), ADediting_97572(31350741, +), ADediting_97573(31350811, +), ADediting_97574(31350824, +), ADediting_97575(31351479, +), ADediting_97576(31351550, +), ADediting_97577(31351551, +), ADediting_97578(31351559, +), ADediting_97579(31351578, +), ADediting_97580(31351579, +), ADediting_97581(31351595, +), ADediting_97582(31351632, +), ADediting_97583(31351636, +), ADediting_97584(31351639, +), ADediting_97585(31351668, +), ADediting_97586(31351676, +), ADediting_97587(31351680, +), ADediting_97588(31351697, +), ADediting_97589(31351702, +), ADediting_97590(31352504, +), ADediting_97591(31352547, +), ADediting_97592(31352569, +), ADediting_97593(31352606, +), ADediting_97594(31352647, +), ADediting_97595(31352656, +), ADediting_97596(31352681, +), ADediting_97597(31352721, +), ADediting_97598(31355010, +), ADediting_97599(31355013, +), ADediting_97600(31355028, +), ADediting_97601(31355081, +), ADediting_97602(31355096, +), ADediting_97603(31357812, +), ADediting_97604(31357825, +), ADediting_97605(31357830, +), ADediting_97606(31357836, +), ADediting_97607(31357895, +), ADediting_97608(31357917, +), ADediting_97609(31357935, +), ADediting_97610(31358028, +), ADediting_97611(31359155, +), ADediting_97612(31359194, +), ADediting_97613(31359306, +), ADediting_97614(31359447, +), ADediting_97615(31359481, +), ADediting_97616(31362072, +), ADediting_97617(31362084, +), ADediting_97618(31363247, +), ADediting_97619(31363264, +), ADediting_97620(31363326, +), ADediting_97621(31363457, +), ADediting_97622(31363530, +), ADediting_97623(31363558, +), ADediting_97624(31363567, +), ADediting_97625(31363667, +), ADediting_97626(31363708, +), ADediting_97627(31363727, +), ADediting_97628(31363846, +), ADediting_97629(31363897, +), ADediting_97630(31363931, +), ADediting_1519422(31321523, +), ADediting_1519423(31321614, +), ADediting_1519424(31324211, +), ADediting_1519425(31350643, +), ADediting_1519426(31351645, +), ADediting_1519427(31352548, +), ADediting_1519428(31358016, +), ADediting_1600449(31310556, +), ADediting_1600450(31311543, +), ADediting_1600451(31311549, +), ADediting_1600452(31321539, +), ADediting_1600453(31322905, +), ADediting_1600454(31322919, +), ADediting_1600455(31331729, +), ADediting_1600456(31331751, +), ADediting_1600457(31332899, +), ADediting_1600458(31332902, +), ADediting_1600459(31357856, +), ADediting_1600460(31359317, +), ADediting_1600461(31363301, +), ADediting_1600462(31363591, +),

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RNA editing positional annotations for ZCCHC17 using Annovar

Protein coding RNA editing(s).

ADeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

ADeditome ID	Position	Variant type
ADediting_97467	chr1_31298449_+	intronic
ADediting_97468	chr1_31298486_+	intronic
ADediting_97469	chr1_31298587_+	intronic
ADediting_97470	chr1_31298594_+	intronic
ADediting_97471	chr1_31298619_+	intronic
ADediting_97472	chr1_31298620_+	intronic
ADediting_97473	chr1_31298637_+	intronic
ADediting_97474	chr1_31300172_+	intronic
ADediting_97475	chr1_31300189_+	intronic
ADediting_97476	chr1_31300198_+	intronic
ADediting_97477	chr1_31300225_+	intronic
ADediting_97478	chr1_31300269_+	intronic
ADediting_97479	chr1_31300280_+	intronic
ADediting_97480	chr1_31300295_+	intronic
ADediting_97481	chr1_31300342_+	intronic
ADediting_97482	chr1_31300678_+	intronic
ADediting_97483	chr1_31300789_+	intronic
ADediting_97484	chr1_31300842_+	intronic
ADediting_97485	chr1_31300848_+	intronic
ADediting_97486	chr1_31300883_+	intronic
ADediting_97487	chr1_31301966_+	intronic
ADediting_97488	chr1_31301972_+	intronic
ADediting_97489	chr1_31302003_+	intronic
ADediting_97490	chr1_31302033_+	intronic
ADediting_97491	chr1_31302069_+	intronic
ADediting_97492	chr1_31302081_+	intronic
ADediting_97493	chr1_31302099_+	intronic
ADediting_97494	chr1_31302107_+	intronic
ADediting_97495	chr1_31302140_+	intronic
ADediting_97496	chr1_31302157_+	intronic
ADediting_97497	chr1_31302185_+	intronic
ADediting_97498	chr1_31303022_+	intronic
ADediting_97499	chr1_31303023_+	intronic
ADediting_97500	chr1_31303075_+	intronic
ADediting_97501	chr1_31303096_+	intronic
ADediting_97502	chr1_31303207_+	intronic
ADediting_97503	chr1_31303264_+	intronic
ADediting_97504	chr1_31307849_+	intronic
ADediting_97505	chr1_31311544_+	intronic
ADediting_97506	chr1_31311555_+	intronic
ADediting_97507	chr1_31311578_+	intronic
ADediting_97508	chr1_31311583_+	intronic
ADediting_97509	chr1_31311600_+	intronic
ADediting_97510	chr1_31311620_+	intronic
ADediting_97511	chr1_31311633_+	intronic
ADediting_97512	chr1_31311634_+	intronic
ADediting_97513	chr1_31311904_+	intronic
ADediting_97514	chr1_31311975_+	intronic
ADediting_97515	chr1_31311998_+	intronic
ADediting_97516	chr1_31311999_+	intronic
ADediting_97517	chr1_31312050_+	intronic
ADediting_97518	chr1_31312095_+	intronic
ADediting_97519	chr1_31321511_+	intronic
ADediting_97520	chr1_31321705_+	intronic
ADediting_97521	chr1_31323528_+	intronic
ADediting_97522	chr1_31324195_+	intronic
ADediting_97523	chr1_31324217_+	intronic
ADediting_97524	chr1_31324218_+	intronic
ADediting_97525	chr1_31324227_+	intronic
ADediting_97526	chr1_31324241_+	intronic
ADediting_97527	chr1_31324253_+	intronic
ADediting_97528	chr1_31324264_+	intronic
ADediting_97529	chr1_31324291_+	intronic
ADediting_97530	chr1_31325908_+	intronic
ADediting_97531	chr1_31328391_+	intronic
ADediting_97532	chr1_31328397_+	intronic
ADediting_97533	chr1_31328428_+	intronic
ADediting_97534	chr1_31331668_+	intronic
ADediting_97535	chr1_31331711_+	intronic
ADediting_97536	chr1_31331716_+	intronic
ADediting_97537	chr1_31331739_+	intronic
ADediting_97538	chr1_31331741_+	intronic
ADediting_97539	chr1_31331862_+	intronic
ADediting_97540	chr1_31331872_+	intronic
ADediting_97541	chr1_31331884_+	intronic
ADediting_97542	chr1_31332689_+	intronic
ADediting_97543	chr1_31332721_+	intronic
ADediting_97544	chr1_31332725_+	intronic
ADediting_97545	chr1_31332726_+	intronic
ADediting_97546	chr1_31332747_+	intronic
ADediting_97547	chr1_31332748_+	intronic
ADediting_97548	chr1_31332751_+	intronic
ADediting_97549	chr1_31332756_+	intronic
ADediting_97550	chr1_31332761_+	intronic
ADediting_97551	chr1_31332779_+	intronic
ADediting_97552	chr1_31332787_+	intronic
ADediting_97553	chr1_31332805_+	intronic
ADediting_97554	chr1_31332822_+	intronic
ADediting_97555	chr1_31332896_+	intronic
ADediting_97556	chr1_31349086_+	intronic
ADediting_97557	chr1_31349087_+	intronic
ADediting_97558	chr1_31349110_+	intronic
ADediting_97559	chr1_31349405_+	intronic
ADediting_97560	chr1_31349424_+	intronic
ADediting_97561	chr1_31349430_+	intronic
ADediting_97562	chr1_31349431_+	intronic
ADediting_97563	chr1_31349448_+	intronic
ADediting_97564	chr1_31349460_+	intronic
ADediting_97565	chr1_31349472_+	intronic
ADediting_97566	chr1_31349476_+	intronic
ADediting_97567	chr1_31349542_+	intronic
ADediting_97568	chr1_31349625_+	intronic
ADediting_97569	chr1_31350693_+	intronic
ADediting_97570	chr1_31350703_+	intronic
ADediting_97571	chr1_31350729_+	intronic
ADediting_97572	chr1_31350741_+	intronic
ADediting_97573	chr1_31350811_+	intronic
ADediting_97574	chr1_31350824_+	intronic
ADediting_97575	chr1_31351479_+	intronic
ADediting_97576	chr1_31351550_+	intronic
ADediting_97577	chr1_31351551_+	intronic
ADediting_97578	chr1_31351559_+	intronic
ADediting_97579	chr1_31351578_+	intronic
ADediting_97580	chr1_31351579_+	intronic
ADediting_97581	chr1_31351595_+	intronic
ADediting_97582	chr1_31351632_+	intronic
ADediting_97583	chr1_31351636_+	intronic
ADediting_97584	chr1_31351639_+	intronic
ADediting_97585	chr1_31351668_+	intronic
ADediting_97586	chr1_31351676_+	intronic
ADediting_97587	chr1_31351680_+	intronic
ADediting_97588	chr1_31351697_+	intronic
ADediting_97589	chr1_31351702_+	intronic
ADediting_97590	chr1_31352504_+	intronic
ADediting_97591	chr1_31352547_+	intronic
ADediting_97592	chr1_31352569_+	intronic
ADediting_97593	chr1_31352606_+	intronic
ADediting_97594	chr1_31352647_+	intronic
ADediting_97595	chr1_31352656_+	intronic
ADediting_97596	chr1_31352681_+	intronic
ADediting_97597	chr1_31352721_+	intronic
ADediting_97598	chr1_31355010_+	intronic
ADediting_97599	chr1_31355013_+	intronic
ADediting_97600	chr1_31355028_+	intronic
ADediting_97601	chr1_31355081_+	intronic
ADediting_97602	chr1_31355096_+	intronic
ADediting_97603	chr1_31357812_+	intronic
ADediting_97604	chr1_31357825_+	intronic
ADediting_97605	chr1_31357830_+	intronic
ADediting_97606	chr1_31357836_+	intronic
ADediting_97607	chr1_31357895_+	intronic
ADediting_97608	chr1_31357917_+	intronic
ADediting_97609	chr1_31357935_+	intronic
ADediting_97610	chr1_31358028_+	intronic
ADediting_97611	chr1_31359155_+	intronic
ADediting_97612	chr1_31359194_+	intronic
ADediting_97613	chr1_31359306_+	intronic
ADediting_97614	chr1_31359447_+	intronic
ADediting_97615	chr1_31359481_+	intronic
ADediting_97616	chr1_31362072_+	intronic
ADediting_97617	chr1_31362084_+	intronic
ADediting_97618	chr1_31363247_+	intronic
ADediting_97619	chr1_31363264_+	intronic
ADediting_97620	chr1_31363326_+	intronic
ADediting_97621	chr1_31363457_+	intronic
ADediting_97622	chr1_31363530_+	intronic
ADediting_97623	chr1_31363558_+	intronic
ADediting_97624	chr1_31363567_+	intronic
ADediting_97625	chr1_31363667_+	intronic
ADediting_97626	chr1_31363708_+	intronic
ADediting_97627	chr1_31363727_+	intronic
ADediting_97628	chr1_31363846_+	intronic
ADediting_97629	chr1_31363897_+	intronic
ADediting_97630	chr1_31363931_+	intronic
ADediting_1519422	chr1_31321523_+	intronic
ADediting_1519423	chr1_31321614_+	intronic
ADediting_1519424	chr1_31324211_+	intronic
ADediting_1519425	chr1_31350643_+	intronic
ADediting_1519426	chr1_31351645_+	intronic
ADediting_1519427	chr1_31352548_+	intronic
ADediting_1519428	chr1_31358016_+	intronic
ADediting_1600449	chr1_31310556_+	intronic
ADediting_1600450	chr1_31311543_+	intronic
ADediting_1600451	chr1_31311549_+	intronic
ADediting_1600452	chr1_31321539_+	intronic
ADediting_1600453	chr1_31322905_+	intronic
ADediting_1600454	chr1_31322919_+	intronic
ADediting_1600455	chr1_31331729_+	intronic
ADediting_1600456	chr1_31331751_+	intronic
ADediting_1600457	chr1_31332899_+	intronic
ADediting_1600458	chr1_31332902_+	intronic
ADediting_1600459	chr1_31357856_+	intronic
ADediting_1600460	chr1_31359317_+	intronic
ADediting_1600461	chr1_31363301_+	intronic
ADediting_1600462	chr1_31363591_+	intronic

Repat-regional RNA editing(s).

ADeditome ID	Position	Repeat family	Repeat sub family	Repeat name
ADediting_97467	chr1_31298449_+	SINE	Alu	Name=AluSz
ADediting_97468	chr1_31298486_+	SINE	Alu	Name=AluSz
ADediting_97469	chr1_31298587_+	SINE	Alu	Name=AluSz
ADediting_97470	chr1_31298594_+	SINE	Alu	Name=AluSz
ADediting_97471	chr1_31298619_+	SINE	Alu	Name=AluSz
ADediting_97472	chr1_31298620_+	SINE	Alu	Name=AluSz
ADediting_97473	chr1_31298637_+	SINE	Alu	Name=AluSz
ADediting_97474	chr1_31300172_+	SINE	Alu	Name=AluJb
ADediting_97475	chr1_31300189_+	SINE	Alu	Name=AluJb
ADediting_97476	chr1_31300198_+	SINE	Alu	Name=AluJb
ADediting_97477	chr1_31300225_+	SINE	Alu	Name=AluJb
ADediting_97478	chr1_31300269_+	SINE	Alu	Name=AluJb
ADediting_97479	chr1_31300280_+	SINE	Alu	Name=AluJb
ADediting_97480	chr1_31300295_+	SINE	Alu	Name=AluJb
ADediting_97481	chr1_31300342_+	SINE	Alu	Name=AluJb
ADediting_97482	chr1_31300678_+	SINE	Alu	Name=AluSq2
ADediting_97483	chr1_31300789_+	SINE	Alu	Name=AluSq2
ADediting_97484	chr1_31300842_+	SINE	Alu	Name=AluSq2
ADediting_97485	chr1_31300848_+	SINE	Alu	Name=AluSq2
ADediting_97486	chr1_31300883_+	SINE	Alu	Name=AluSq2
ADediting_97487	chr1_31301966_+	SINE	Alu	Name=AluSz
ADediting_97488	chr1_31301972_+	SINE	Alu	Name=AluSz
ADediting_97489	chr1_31302003_+	SINE	Alu	Name=AluSz
ADediting_97490	chr1_31302033_+	SINE	Alu	Name=AluSz
ADediting_97491	chr1_31302069_+	SINE	Alu	Name=AluSz
ADediting_97492	chr1_31302081_+	SINE	Alu	Name=AluSz
ADediting_97493	chr1_31302099_+	SINE	Alu	Name=AluSz
ADediting_97494	chr1_31302107_+	SINE	Alu	Name=AluSz
ADediting_97495	chr1_31302140_+	SINE	Alu	Name=AluSz
ADediting_97496	chr1_31302157_+	SINE	Alu	Name=AluSz
ADediting_97497	chr1_31302185_+	SINE	Alu	Name=AluSz
ADediting_97498	chr1_31303022_+	SINE	Alu	Name=AluJr
ADediting_97499	chr1_31303023_+	SINE	Alu	Name=AluJr
ADediting_97500	chr1_31303075_+	SINE	Alu	Name=AluJr
ADediting_97501	chr1_31303096_+	SINE	Alu	Name=AluJr
ADediting_97502	chr1_31303207_+	SINE	Alu	Name=AluJr
ADediting_97503	chr1_31303264_+	SINE	Alu	Name=AluJr
ADediting_97504	chr1_31307849_+	SINE	Alu	Name=AluSx3
ADediting_97505	chr1_31311544_+	LTR	ERVL-MaLR	Name=MLT1A1
ADediting_97506	chr1_31311555_+	LTR	ERVL-MaLR	Name=MLT1A1
ADediting_97507	chr1_31311578_+	LTR	ERVL-MaLR	Name=MLT1A1
ADediting_97508	chr1_31311583_+	LTR	ERVL-MaLR	Name=MLT1A1
ADediting_97509	chr1_31311600_+	LTR	ERVL-MaLR	Name=MLT1A1
ADediting_97510	chr1_31311620_+	LTR	ERVL-MaLR	Name=MLT1A1
ADediting_97511	chr1_31311633_+	LTR	ERVL-MaLR	Name=MLT1A1
ADediting_97512	chr1_31311634_+	LTR	ERVL-MaLR	Name=MLT1A1
ADediting_97513	chr1_31311904_+	LTR	ERVL-MaLR	Name=MLT1A1
ADediting_97514	chr1_31311975_+	LTR	ERVL-MaLR	Name=MLT1A1
ADediting_97515	chr1_31311998_+	LTR	ERVL-MaLR	Name=MLT1A1
ADediting_97516	chr1_31311999_+	LTR	ERVL-MaLR	Name=MLT1A1
ADediting_97517	chr1_31312050_+	LTR	ERVL-MaLR	Name=MLT1A1
ADediting_97518	chr1_31312095_+	LTR	ERVL-MaLR	Name=MLT1A1
ADediting_97519	chr1_31321511_+	SINE	Alu	Name=AluSz6
ADediting_97520	chr1_31321705_+	SINE	Alu	Name=AluSz6
ADediting_97521	chr1_31323528_+	SINE	Alu	Name=AluY
ADediting_97522	chr1_31324195_+	SINE	Alu	Name=AluJr
ADediting_97523	chr1_31324217_+	SINE	Alu	Name=AluJr
ADediting_97524	chr1_31324218_+	SINE	Alu	Name=AluJr
ADediting_97525	chr1_31324227_+	SINE	Alu	Name=AluJr
ADediting_97526	chr1_31324241_+	SINE	Alu	Name=AluJr
ADediting_97527	chr1_31324253_+	SINE	Alu	Name=AluJr
ADediting_97528	chr1_31324264_+	SINE	Alu	Name=AluJr
ADediting_97529	chr1_31324291_+	SINE	Alu	Name=AluJr
ADediting_97530	chr1_31325908_+	SINE	Alu	Name=AluJr
ADediting_97531	chr1_31328391_+	SINE	Alu	Name=AluJb
ADediting_97532	chr1_31328397_+	SINE	Alu	Name=AluJb
ADediting_97533	chr1_31328428_+	SINE	Alu	Name=AluJb
ADediting_97534	chr1_31331668_+	SINE	Alu	Name=AluSc
ADediting_97535	chr1_31331711_+	SINE	Alu	Name=AluSc
ADediting_97536	chr1_31331716_+	SINE	Alu	Name=AluSc
ADediting_97537	chr1_31331739_+	SINE	Alu	Name=AluSc
ADediting_97538	chr1_31331741_+	SINE	Alu	Name=AluSc
ADediting_97539	chr1_31331862_+	SINE	Alu	Name=AluSc
ADediting_97540	chr1_31331872_+	SINE	Alu	Name=AluSc
ADediting_97541	chr1_31331884_+	SINE	Alu	Name=AluSc
ADediting_97542	chr1_31332689_+	SINE	Alu	Name=AluSx1
ADediting_97543	chr1_31332721_+	SINE	Alu	Name=AluSx1
ADediting_97544	chr1_31332725_+	SINE	Alu	Name=AluSx1
ADediting_97545	chr1_31332726_+	SINE	Alu	Name=AluSx1
ADediting_97546	chr1_31332747_+	SINE	Alu	Name=AluSx1
ADediting_97547	chr1_31332748_+	SINE	Alu	Name=AluSx1
ADediting_97548	chr1_31332751_+	SINE	Alu	Name=AluSx1
ADediting_97549	chr1_31332756_+	SINE	Alu	Name=AluSx1
ADediting_97550	chr1_31332761_+	SINE	Alu	Name=AluSx1
ADediting_97551	chr1_31332779_+	SINE	Alu	Name=AluSx1
ADediting_97552	chr1_31332787_+	SINE	Alu	Name=AluSx1
ADediting_97553	chr1_31332805_+	SINE	Alu	Name=AluSx1
ADediting_97554	chr1_31332822_+	SINE	Alu	Name=AluSx1
ADediting_97555	chr1_31332896_+	SINE	Alu	Name=AluSx1
ADediting_97556	chr1_31349086_+	SINE	Alu	Name=FAM
ADediting_97557	chr1_31349087_+	SINE	Alu	Name=FAM
ADediting_97558	chr1_31349110_+	SINE	Alu	Name=FAM
ADediting_97559	chr1_31349405_+	SINE	Alu	Name=AluSz6
ADediting_97560	chr1_31349424_+	SINE	Alu	Name=AluSz6
ADediting_97561	chr1_31349430_+	SINE	Alu	Name=AluSz6
ADediting_97562	chr1_31349431_+	SINE	Alu	Name=AluSz6
ADediting_97563	chr1_31349448_+	SINE	Alu	Name=AluSz6
ADediting_97564	chr1_31349460_+	SINE	Alu	Name=AluSz6
ADediting_97565	chr1_31349472_+	SINE	Alu	Name=AluSz6
ADediting_97566	chr1_31349476_+	SINE	Alu	Name=AluSz6
ADediting_97567	chr1_31349542_+	SINE	Alu	Name=AluSz6
ADediting_97568	chr1_31349625_+	SINE	Alu	Name=AluSz6
ADediting_97569	chr1_31350693_+	SINE	Alu	Name=AluSz
ADediting_97570	chr1_31350703_+	SINE	Alu	Name=AluSz
ADediting_97571	chr1_31350729_+	SINE	Alu	Name=AluSz
ADediting_97572	chr1_31350741_+	SINE	Alu	Name=AluSz
ADediting_97573	chr1_31350811_+	SINE	Alu	Name=AluSz
ADediting_97574	chr1_31350824_+	SINE	Alu	Name=AluSz
ADediting_97575	chr1_31351479_+	SINE	Alu	Name=AluJr
ADediting_97576	chr1_31351550_+	SINE	Alu	Name=AluJr
ADediting_97577	chr1_31351551_+	SINE	Alu	Name=AluJr
ADediting_97578	chr1_31351559_+	SINE	Alu	Name=AluJr
ADediting_97579	chr1_31351578_+	SINE	Alu	Name=AluJr
ADediting_97580	chr1_31351579_+	SINE	Alu	Name=AluJr
ADediting_97581	chr1_31351595_+	SINE	Alu	Name=AluJr
ADediting_97582	chr1_31351632_+	SINE	Alu	Name=AluJr
ADediting_97583	chr1_31351636_+	SINE	Alu	Name=AluJr
ADediting_97584	chr1_31351639_+	SINE	Alu	Name=AluJr
ADediting_97585	chr1_31351668_+	SINE	Alu	Name=AluJr
ADediting_97586	chr1_31351676_+	SINE	Alu	Name=AluJr
ADediting_97587	chr1_31351680_+	SINE	Alu	Name=AluJr
ADediting_97588	chr1_31351697_+	SINE	Alu	Name=AluJr
ADediting_97589	chr1_31351702_+	SINE	Alu	Name=AluJr
ADediting_97590	chr1_31352504_+	SINE	Alu	Name=AluJr
ADediting_97591	chr1_31352547_+	SINE	Alu	Name=AluJr
ADediting_97592	chr1_31352569_+	SINE	Alu	Name=AluJr
ADediting_97593	chr1_31352606_+	SINE	Alu	Name=AluJr
ADediting_97594	chr1_31352647_+	SINE	Alu	Name=AluJr
ADediting_97595	chr1_31352656_+	SINE	Alu	Name=AluJr
ADediting_97596	chr1_31352681_+	SINE	Alu	Name=AluJr
ADediting_97597	chr1_31352721_+	SINE	Alu	Name=AluJr
ADediting_97598	chr1_31355010_+	SINE	Alu	Name=AluSz
ADediting_97599	chr1_31355013_+	SINE	Alu	Name=AluSz
ADediting_97600	chr1_31355028_+	SINE	Alu	Name=AluSz
ADediting_97601	chr1_31355081_+	SINE	Alu	Name=AluSz
ADediting_97602	chr1_31355096_+	SINE	Alu	Name=AluSz
ADediting_97603	chr1_31357812_+	SINE	Alu	Name=AluSp
ADediting_97604	chr1_31357825_+	SINE	Alu	Name=AluSp
ADediting_97605	chr1_31357830_+	SINE	Alu	Name=AluSp
ADediting_97606	chr1_31357836_+	SINE	Alu	Name=AluSp
ADediting_97607	chr1_31357895_+	SINE	Alu	Name=AluSp
ADediting_97608	chr1_31357917_+	SINE	Alu	Name=AluSp
ADediting_97609	chr1_31357935_+	SINE	Alu	Name=AluSp
ADediting_97610	chr1_31358028_+	SINE	Alu	Name=AluSp
ADediting_97611	chr1_31359155_+	SINE	Alu	Name=AluJo
ADediting_97612	chr1_31359194_+	SINE	Alu	Name=AluJo
ADediting_97613	chr1_31359306_+	SINE	Alu	Name=AluSz
ADediting_97614	chr1_31359447_+	SINE	Alu	Name=AluSz
ADediting_97615	chr1_31359481_+	SINE	Alu	Name=AluSz
ADediting_97616	chr1_31362072_+	SINE	Alu	Name=AluSc
ADediting_97617	chr1_31362084_+	SINE	Alu	Name=AluSc
ADediting_97618	chr1_31363247_+	SINE	Alu	Name=AluY
ADediting_97619	chr1_31363264_+	SINE	Alu	Name=AluY
ADediting_97620	chr1_31363326_+	SINE	Alu	Name=AluY
ADediting_97621	chr1_31363457_+	SINE	Alu	Name=AluY
ADediting_97622	chr1_31363530_+	SINE	Alu	Name=AluJb
ADediting_97623	chr1_31363558_+	SINE	Alu	Name=AluJb
ADediting_97624	chr1_31363567_+	SINE	Alu	Name=AluJb
ADediting_97625	chr1_31363667_+	SINE	Alu	Name=AluJb
ADediting_97626	chr1_31363708_+	SINE	Alu	Name=AluJb
ADediting_97627	chr1_31363727_+	SINE	Alu	Name=AluJb
ADediting_97628	chr1_31363846_+	SINE	Alu	Name=FLAM_C
ADediting_97629	chr1_31363897_+	SINE	Alu	Name=FLAM_C
ADediting_97630	chr1_31363931_+	SINE	Alu	Name=FLAM_C
ADediting_1519422	chr1_31321523_+	SINE	Alu	Name=AluSz6
ADediting_1519423	chr1_31321614_+	SINE	Alu	Name=AluSz6
ADediting_1519424	chr1_31324211_+	SINE	Alu	Name=AluJr
ADediting_1519425	chr1_31350643_+	SINE	Alu	Name=AluSz
ADediting_1519426	chr1_31351645_+	SINE	Alu	Name=AluJr
ADediting_1519427	chr1_31352548_+	SINE	Alu	Name=AluJr
ADediting_1519428	chr1_31358016_+	SINE	Alu	Name=AluSp
ADediting_1600449	chr1_31310556_+	LTR	ERVL-MaLR	Name=MSTD
ADediting_1600450	chr1_31311543_+	LTR	ERVL-MaLR	Name=MLT1A1
ADediting_1600451	chr1_31311549_+	LTR	ERVL-MaLR	Name=MLT1A1
ADediting_1600452	chr1_31321539_+	SINE	Alu	Name=AluSz6
ADediting_1600453	chr1_31322905_+	SINE	Alu	Name=AluSg
ADediting_1600454	chr1_31322919_+	SINE	Alu	Name=AluSg
ADediting_1600455	chr1_31331729_+	SINE	Alu	Name=AluSc
ADediting_1600456	chr1_31331751_+	SINE	Alu	Name=AluSc
ADediting_1600457	chr1_31332899_+	SINE	Alu	Name=AluSx1
ADediting_1600458	chr1_31332902_+	SINE	Alu	Name=AluSx1
ADediting_1600459	chr1_31357856_+	SINE	Alu	Name=AluSp
ADediting_1600460	chr1_31359317_+	SINE	Alu	Name=AluSz
ADediting_1600461	chr1_31363301_+	SINE	Alu	Name=AluY
ADediting_1600462	chr1_31363591_+	SINE	Alu	Name=AluJb

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RNA A-to-I editing events in the alternative splicing sites for ZCCHC17

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	ADeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
A3SS	ADediting_97628	chr1_31363846_+	31363828:31363850	3ss	2i	TTCTTTTTTTCTCTTTTTAGAGA	11.47	TTCTTTTTTTCTCTTTTTGGAGA	3.51

Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ZCCHC17

Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

- Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

ADeditome ID

Chr

Positoing

Skipped exon

ENSG

ENSTs

Top

Protein coding region RNA A-to-I editings for ZCCHC17

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

Top

The effects of the RNA editing to the miRNA binding sites for ZCCHC17

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

ADediting_98289

chr1_32086992_+

ENSG00000121766.15

ENST00000344147.9

ZCCHC17-201

hsa-miR-5585-3p

chr1

31364435

31364441

7mer-m8

31364422

31364442

166

-21.99

ADediting_98289

chr1_32086992_+

ENSG00000121766.15

ENST00000373714.5

ZCCHC17-202

hsa-miR-5585-3p

chr1

31364435

31364441

7mer-m8

31364422

31364442

166

-21.99

ADediting_98289

chr1_32086992_+

ENSG00000121766.15

ENST00000546109.5

ZCCHC17-204

hsa-miR-5585-3p

chr1

31364435

31364441

7mer-m8

31364422

31364442

166

-21.99

ADediting_98289

chr1_32086992_+

ENSG00000121766.15

ENST00000615916.4

ZCCHC17-205

hsa-miR-5585-3p

chr1

31364435

31364441

7mer-m8

31364422

31364442

166

-21.99

ADediting_98289

chr1_32086992_+

ENSG00000121766.15

ENST00000616393.4

ZCCHC17-206

hsa-miR-5585-3p

chr1

31364435

31364441

7mer-m8

31364422

31364442

166

-21.99

ADediting_98289

chr1_32086992_+

ENSG00000121766.15

ENST00000616859.4

ZCCHC17-207

hsa-miR-5585-3p

chr1

31364435

31364441

7mer-m8

31364422

31364442

166

-21.99

ADediting_98289

chr1_32086992_+

ENSG00000121766.15

ENST00000618216.4

ZCCHC17-208

hsa-miR-5585-3p

chr1

31364435

31364441

7mer-m8

31364422

31364442

166

-21.99

ADediting_98289

chr1_32086992_+

ENSG00000121766.15

ENST00000627541.1

ZCCHC17-209

hsa-miR-5585-3p

chr1

31364435

31364441

7mer-m8

31364422

31364442

166

-21.99

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

ADediting_527135

chr16_24203190_+

ENSG00000121766.15

ENST00000344147.9

ZCCHC17-201

hsa-miR-1273h-3p

chr1

31364766

31364772

7mer-m8

31364752

31364773

145

-18.79

ADediting_527135

chr16_24203190_+

ENSG00000121766.15

ENST00000373714.5

ZCCHC17-202

hsa-miR-1273h-3p

chr1

31364766

31364772

7mer-m8

31364752

31364773

145

-18.79

ADediting_527135

chr16_24203190_+

ENSG00000121766.15

ENST00000546109.5

ZCCHC17-204

hsa-miR-1273h-3p

chr1

31364766

31364772

7mer-m8

31364752

31364773

145

-18.79

ADediting_527135

chr16_24203190_+

ENSG00000121766.15

ENST00000615916.4

ZCCHC17-205

hsa-miR-1273h-3p

chr1

31364766

31364772

7mer-m8

31364752

31364773

145

-18.79

ADediting_527135

chr16_24203190_+

ENSG00000121766.15

ENST00000616393.4

ZCCHC17-206

hsa-miR-1273h-3p

chr1

31364766

31364772

7mer-m8

31364752

31364773

145

-18.79

ADediting_527135

chr16_24203190_+

ENSG00000121766.15

ENST00000616859.4

ZCCHC17-207

hsa-miR-1273h-3p

chr1

31364766

31364772

7mer-m8

31364752

31364773

145

-18.79

ADediting_527135

chr16_24203190_+

ENSG00000121766.15

ENST00000618216.4

ZCCHC17-208

hsa-miR-1273h-3p

chr1

31364766

31364772

7mer-m8

31364752

31364773

145

-18.79

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for ZCCHC17

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in miRNA.

ADeditom_ID

ENST

mir_ID

Editing_Information

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

RNA A-to-I editing in mRNA.

ADeditom_ID

ENST

Editing_Information

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

RNA A-to-I editing in lncRNA.

ADeditom_ID

ENST

Editing_Information

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

Top

Relation with ADAR for ZCCHC17

Correlation between ADAR gene expression and RNA editing frequency

Tissue	ADeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
DLPFC	ADediting_97484	chr1_31300842_+	0.562249511260685	0.0330380641494005	0.140853134739979	-0.0838306468840727	5.0710672898433e-14	0.410353872196885
DLPFC	ADediting_97604	chr1_31357825_+	0.001321936769528	0.18159729314179	0.279684660415529	0.0615887643765313	1.12723528783932e-15	0.434058841909624

Correlation between ADAR gene expression and this gene's expression

Tissue	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
DLPFC	1.31711879800153e-31	0.599275890822827	1.252637273485e-47	0.703656686927635	0.481866804623697	0.040090833598706
AC	2.09910615221782e-73	0.857123415049523	4.84239517891417e-51	0.773563095336448	2.89354181563099e-15	0.471852381714669
PCC	3.51172978730194e-29	0.697654040989343	1.71188691044782e-29	0.700419941928758	0.0653599474090076	0.1336180345593
CER	4.60756552957819e-24	0.707369485643046	6.64890277788842e-11	0.500928037351868	0.237931782969754	0.096944478525098
TCX	4.76261596836021e-21	0.672019659086749	1.62112837265737e-15	0.591347604653568	0.208556676199814	-0.103267174390159
FP	2.49159185395126e-10	0.451631343251459	9.21279371376622e-11	0.461238445079117	0.0629961417380591	-0.139654540941965
IFG	0.0297834839512957	0.434960533091981	0.242562979249186	0.242629838973449	0.0852786122942902	-0.351089916980685
PG	4.47529841945302e-54	0.853890526929773	2.53374436153603e-23	0.645681471067702	0.253189528708071	-0.0842009259910126
STG	2.53576889436338e-15	0.732082952851245	2.07003642628187e-09	0.596877595564573	0.339263507006567	-0.105556834805992

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Relation with AD stages for ZCCHC17

Correlation between AD stages and RNA editing frequency

Tissue

ADeditomID

position

P-val

Coeff.

Correlation between AD stages and this gene's expression

Tissue	P-val	Coeff.
STG	0.00493030760395119	-0.304023801449112

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RelatedDrugs for ZCCHC17

Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)

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RelatedDiseases for ZCCHC17

Diseases associated with this gene.
(DisGeNet 4.0)

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Gene summary for ZCCHC17

RNA A-to-I events for ZCCHC17

RNA editing positional annotations for ZCCHC17 using Annovar

RNA A-to-I editing events in the alternative splicing sites for ZCCHC17

Differntial gene expression between RNA A-to-I edited versus non-edited samples for ZCCHC17

Protein coding region RNA A-to-I editings for ZCCHC17

The effects of the RNA editing to the miRNA binding sites for ZCCHC17

The effects of the RNA editing to the stability of the RNA structures for ZCCHC17

Relation with ADAR for ZCCHC17

Relation with AD stages for ZCCHC17

RelatedDrugs for ZCCHC17

RelatedDiseases for ZCCHC17

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited versus non-edited samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with AD stages
	Related drugs with this gene
	Related diseases with this gene