ADeditome Logo

Home

Download

Statistics

Landscape

Help

Contact
Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited versus non-edited samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with AD stages

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene


Gene summary for TIMMDC1

check button Gene summary
Gene informationGene symbol

TIMMDC1

Gene ID

51300

Gene nametranslocase of inner mitochondrial membrane domain containing 1
SynonymsC3orf1|MC1DN31
Cytomap

3q13.33

Type of geneprotein-coding
Descriptioncomplex I assembly factor TIMMDC1, mitochondrialM5-14 proteinTIMM domain containing-protein 1translocase of inner mitochondrial membrane domain-containing protein 1transmembrane protein C3orf1
Modification date20200322
UniProtAcc

Q9NPL8,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

Top

RNA A-to-I events for TIMMDC1

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_1014714(119499233, +), ADediting_1014715(119499584, +), ADediting_1014716(119499601, +), ADediting_1014717(119502323, +), ADediting_1014718(119502359, +), ADediting_1014719(119502419, +), ADediting_1014720(119502465, +), ADediting_1014721(119502628, +), ADediting_1014722(119502636, +), ADediting_1014723(119502644, +), ADediting_1014724(119502659, +), ADediting_1014725(119502688, +), ADediting_1014726(119502692, +), ADediting_1014727(119502701, +), ADediting_1014728(119502702, +), ADediting_1014729(119502704, +), ADediting_1014730(119502746, +), ADediting_1014731(119502750, +), ADediting_1014732(119502770, +), ADediting_1014733(119502796, +), ADediting_1014734(119502821, +), ADediting_1014735(119502822, +), ADediting_1014736(119504820, +), ADediting_1014737(119504826, +), ADediting_1014738(119504827, +), ADediting_1014739(119504835, +), ADediting_1014740(119504848, +), ADediting_1014741(119504901, +), ADediting_1014742(119504902, +), ADediting_1014743(119504913, +), ADediting_1014744(119504918, +), ADediting_1014745(119504931, +), ADediting_1014746(119504958, +), ADediting_1014747(119504963, +), ADediting_1014748(119504967, +), ADediting_1014749(119505417, +), ADediting_1014750(119505433, +), ADediting_1014751(119505441, +), ADediting_1014752(119505443, +), ADediting_1014753(119505444, +), ADediting_1014754(119505457, +), ADediting_1014755(119505483, +), ADediting_1014756(119505495, +), ADediting_1014757(119505505, +), ADediting_1014758(119505541, +), ADediting_1014759(119505547, +), ADediting_1014760(119505550, +), ADediting_1014761(119505555, +), ADediting_1014762(119505601, +), ADediting_1014763(119506253, +), ADediting_1014764(119506276, +), ADediting_1014765(119506298, +), ADediting_1014766(119506313, +), ADediting_1014767(119506348, +), ADediting_1014768(119506349, +), ADediting_1014769(119506398, +), ADediting_1014770(119506404, +), ADediting_1014771(119506408, +), ADediting_1014772(119506412, +), ADediting_1014773(119506444, +), ADediting_1014774(119506458, +), ADediting_1014775(119506460, +), ADediting_1014776(119506474, +), ADediting_1014777(119508928, +), ADediting_1014778(119508950, +), ADediting_1014779(119508951, +), ADediting_1014780(119508977, +), ADediting_1014781(119508981, +), ADediting_1014782(119509041, +), ADediting_1014783(119509044, +), ADediting_1014784(119509046, +), ADediting_1014785(119509050, +), ADediting_1014786(119509059, +), ADediting_1014787(119509085, +), ADediting_1014788(119509086, +), ADediting_1014789(119509095, +), ADediting_1014790(119509116, +), ADediting_1014791(119509138, +), ADediting_1014792(119509147, +), ADediting_1014793(119509156, +), ADediting_1014794(119509712, +), ADediting_1014795(119509741, +), ADediting_1014796(119509766, +), ADediting_1014797(119509772, +), ADediting_1014798(119509786, +), ADediting_1014799(119509803, +), ADediting_1014800(119509815, +), ADediting_1014801(119509825, +), ADediting_1014802(119509875, +), ADediting_1014803(119509883, +), ADediting_1014804(119509891, +), ADediting_1014805(119509946, +), ADediting_1014806(119511223, +), ADediting_1014807(119511228, +), ADediting_1014808(119511240, +), ADediting_1014809(119511291, +), ADediting_1014810(119511292, +), ADediting_1014811(119511302, +), ADediting_1014812(119511354, +), ADediting_1014813(119511360, +), ADediting_1014814(119511364, +), ADediting_1014815(119511391, +), ADediting_1014816(119511397, +), ADediting_1014817(119511398, +), ADediting_1014818(119511409, +), ADediting_1014819(119511418, +), ADediting_1014820(119511422, +), ADediting_1014821(119511426, +), ADediting_1014822(119511427, +), ADediting_1014823(119511429, +), ADediting_1014824(119511432, +), ADediting_1014825(119511456, +), ADediting_1014826(119511472, +), ADediting_1014827(119512359, +), ADediting_1014828(119512412, +), ADediting_1014829(119512462, +), ADediting_1014830(119512476, +), ADediting_1014831(119512789, +), ADediting_1014832(119512799, +), ADediting_1014833(119512807, +), ADediting_1014834(119512842, +), ADediting_1014835(119512898, +), ADediting_1014836(119512924, +), ADediting_1014837(119513015, +), ADediting_1014838(119514980, +), ADediting_1014839(119515043, +), ADediting_1014840(119515070, +), ADediting_1014841(119515096, +), ADediting_1014842(119515141, +), ADediting_1014843(119515158, +), ADediting_1571841(119499158, +), ADediting_1571842(119499174, +), ADediting_1571843(119499583, +), ADediting_1571844(119499598, +), ADediting_1571845(119502293, +), ADediting_1571846(119502375, +), ADediting_1571847(119502639, +), ADediting_1571848(119502645, +), ADediting_1571849(119502745, +), ADediting_1571850(119502753, +), ADediting_1571851(119504849, +), ADediting_1571852(119509020, +), ADediting_1571853(119509055, +), ADediting_1571854(119509968, +), ADediting_1571855(119511186, +), ADediting_1571856(119511222, +), ADediting_1571857(119511282, +), ADediting_1571858(119511447, +), ADediting_1571859(119512841, +), ADediting_1571860(119512870, +), ADediting_1571861(119512880, +), ADediting_1643665(119502638, +), ADediting_1643666(119506439, +), ADediting_1643667(119512539, +), ADediting_1643668(119512540, +),

Top

RNA editing positional annotations for TIMMDC1 using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_1014714chr3_119499233_+intronic
ADediting_1014715chr3_119499584_+intronic
ADediting_1014716chr3_119499601_+intronic
ADediting_1014717chr3_119502323_+intronic
ADediting_1014718chr3_119502359_+intronic
ADediting_1014719chr3_119502419_+intronic
ADediting_1014720chr3_119502465_+intronic
ADediting_1014721chr3_119502628_+intronic
ADediting_1014722chr3_119502636_+intronic
ADediting_1014723chr3_119502644_+intronic
ADediting_1014724chr3_119502659_+intronic
ADediting_1014725chr3_119502688_+intronic
ADediting_1014726chr3_119502692_+intronic
ADediting_1014727chr3_119502701_+intronic
ADediting_1014728chr3_119502702_+intronic
ADediting_1014729chr3_119502704_+intronic
ADediting_1014730chr3_119502746_+intronic
ADediting_1014731chr3_119502750_+intronic
ADediting_1014732chr3_119502770_+intronic
ADediting_1014733chr3_119502796_+intronic
ADediting_1014734chr3_119502821_+intronic
ADediting_1014735chr3_119502822_+intronic
ADediting_1014736chr3_119504820_+intronic
ADediting_1014737chr3_119504826_+intronic
ADediting_1014738chr3_119504827_+intronic
ADediting_1014739chr3_119504835_+intronic
ADediting_1014740chr3_119504848_+intronic
ADediting_1014741chr3_119504901_+intronic
ADediting_1014742chr3_119504902_+intronic
ADediting_1014743chr3_119504913_+intronic
ADediting_1014744chr3_119504918_+intronic
ADediting_1014745chr3_119504931_+intronic
ADediting_1014746chr3_119504958_+intronic
ADediting_1014747chr3_119504963_+intronic
ADediting_1014748chr3_119504967_+intronic
ADediting_1014749chr3_119505417_+intronic
ADediting_1014750chr3_119505433_+intronic
ADediting_1014751chr3_119505441_+intronic
ADediting_1014752chr3_119505443_+intronic
ADediting_1014753chr3_119505444_+intronic
ADediting_1014754chr3_119505457_+intronic
ADediting_1014755chr3_119505483_+intronic
ADediting_1014756chr3_119505495_+intronic
ADediting_1014757chr3_119505505_+intronic
ADediting_1014758chr3_119505541_+intronic
ADediting_1014759chr3_119505547_+intronic
ADediting_1014760chr3_119505550_+intronic
ADediting_1014761chr3_119505555_+intronic
ADediting_1014762chr3_119505601_+intronic
ADediting_1014763chr3_119506253_+intronic
ADediting_1014764chr3_119506276_+intronic
ADediting_1014765chr3_119506298_+intronic
ADediting_1014766chr3_119506313_+intronic
ADediting_1014767chr3_119506348_+intronic
ADediting_1014768chr3_119506349_+intronic
ADediting_1014769chr3_119506398_+intronic
ADediting_1014770chr3_119506404_+intronic
ADediting_1014771chr3_119506408_+intronic
ADediting_1014772chr3_119506412_+intronic
ADediting_1014773chr3_119506444_+intronic
ADediting_1014774chr3_119506458_+intronic
ADediting_1014775chr3_119506460_+intronic
ADediting_1014776chr3_119506474_+intronic
ADediting_1014777chr3_119508928_+intronic
ADediting_1014778chr3_119508950_+intronic
ADediting_1014779chr3_119508951_+intronic
ADediting_1014780chr3_119508977_+intronic
ADediting_1014781chr3_119508981_+intronic
ADediting_1014782chr3_119509041_+intronic
ADediting_1014783chr3_119509044_+intronic
ADediting_1014784chr3_119509046_+intronic
ADediting_1014785chr3_119509050_+intronic
ADediting_1014786chr3_119509059_+intronic
ADediting_1014787chr3_119509085_+intronic
ADediting_1014788chr3_119509086_+intronic
ADediting_1014789chr3_119509095_+intronic
ADediting_1014790chr3_119509116_+intronic
ADediting_1014791chr3_119509138_+intronic
ADediting_1014792chr3_119509147_+intronic
ADediting_1014793chr3_119509156_+intronic
ADediting_1014794chr3_119509712_+intronic
ADediting_1014795chr3_119509741_+intronic
ADediting_1014796chr3_119509766_+intronic
ADediting_1014797chr3_119509772_+intronic
ADediting_1014798chr3_119509786_+intronic
ADediting_1014799chr3_119509803_+intronic
ADediting_1014800chr3_119509815_+intronic
ADediting_1014801chr3_119509825_+intronic
ADediting_1014802chr3_119509875_+intronic
ADediting_1014803chr3_119509883_+intronic
ADediting_1014804chr3_119509891_+intronic
ADediting_1014805chr3_119509946_+intronic
ADediting_1014806chr3_119511223_+intronic
ADediting_1014807chr3_119511228_+intronic
ADediting_1014808chr3_119511240_+intronic
ADediting_1014809chr3_119511291_+intronic
ADediting_1014810chr3_119511292_+intronic
ADediting_1014811chr3_119511302_+intronic
ADediting_1014812chr3_119511354_+intronic
ADediting_1014813chr3_119511360_+intronic
ADediting_1014814chr3_119511364_+intronic
ADediting_1014815chr3_119511391_+intronic
ADediting_1014816chr3_119511397_+intronic
ADediting_1014817chr3_119511398_+intronic
ADediting_1014818chr3_119511409_+intronic
ADediting_1014819chr3_119511418_+intronic
ADediting_1014820chr3_119511422_+intronic
ADediting_1014821chr3_119511426_+intronic
ADediting_1014822chr3_119511427_+intronic
ADediting_1014823chr3_119511429_+intronic
ADediting_1014824chr3_119511432_+intronic
ADediting_1014825chr3_119511456_+intronic
ADediting_1014826chr3_119511472_+intronic
ADediting_1014827chr3_119512359_+intronic
ADediting_1014828chr3_119512412_+intronic
ADediting_1014829chr3_119512462_+intronic
ADediting_1014830chr3_119512476_+intronic
ADediting_1014831chr3_119512789_+intronic
ADediting_1014832chr3_119512799_+intronic
ADediting_1014833chr3_119512807_+intronic
ADediting_1014834chr3_119512842_+intronic
ADediting_1014835chr3_119512898_+intronic
ADediting_1014836chr3_119512924_+intronic
ADediting_1014837chr3_119513015_+intronic
ADediting_1014838chr3_119514980_+intronic
ADediting_1014839chr3_119515043_+intronic
ADediting_1014840chr3_119515070_+intronic
ADediting_1014841chr3_119515096_+intronic
ADediting_1014842chr3_119515141_+intronic
ADediting_1014843chr3_119515158_+intronic
ADediting_1571841chr3_119499158_+intronic
ADediting_1571842chr3_119499174_+intronic
ADediting_1571843chr3_119499583_+intronic
ADediting_1571844chr3_119499598_+intronic
ADediting_1571845chr3_119502293_+intronic
ADediting_1571846chr3_119502375_+intronic
ADediting_1571847chr3_119502639_+intronic
ADediting_1571848chr3_119502645_+intronic
ADediting_1571849chr3_119502745_+intronic
ADediting_1571850chr3_119502753_+intronic
ADediting_1571851chr3_119504849_+intronic
ADediting_1571852chr3_119509020_+intronic
ADediting_1571853chr3_119509055_+intronic
ADediting_1571854chr3_119509968_+intronic
ADediting_1571855chr3_119511186_+intronic
ADediting_1571856chr3_119511222_+intronic
ADediting_1571857chr3_119511282_+intronic
ADediting_1571858chr3_119511447_+intronic
ADediting_1571859chr3_119512841_+intronic
ADediting_1571860chr3_119512870_+intronic
ADediting_1571861chr3_119512880_+intronic
ADediting_1643665chr3_119502638_+intronic
ADediting_1643666chr3_119506439_+intronic
ADediting_1643667chr3_119512539_+intronic
ADediting_1643668chr3_119512540_+intronic

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_1014714chr3_119499233_+SINEAluName=AluJb
ADediting_1014715chr3_119499584_+SINEAluName=AluSx1
ADediting_1014716chr3_119499601_+SINEAluName=AluSx1
ADediting_1014717chr3_119502323_+SINEAluName=AluJb
ADediting_1014718chr3_119502359_+SINEAluName=AluJb
ADediting_1014719chr3_119502419_+SINEAluName=AluJb
ADediting_1014720chr3_119502465_+SINEAluName=AluJb
ADediting_1014721chr3_119502628_+SINEAluName=AluJr4
ADediting_1014722chr3_119502636_+SINEAluName=AluJr4
ADediting_1014723chr3_119502644_+SINEAluName=AluJr4
ADediting_1014724chr3_119502659_+SINEAluName=AluJr4
ADediting_1014725chr3_119502688_+SINEAluName=AluJr4
ADediting_1014726chr3_119502692_+SINEAluName=AluJr4
ADediting_1014727chr3_119502701_+SINEAluName=AluJr4
ADediting_1014728chr3_119502702_+SINEAluName=AluJr4
ADediting_1014729chr3_119502704_+SINEAluName=AluJr4
ADediting_1014730chr3_119502746_+SINEAluName=AluJr4
ADediting_1014731chr3_119502750_+SINEAluName=AluJr4
ADediting_1014732chr3_119502770_+SINEAluName=AluJr4
ADediting_1014733chr3_119502796_+SINEAluName=AluJr4
ADediting_1014734chr3_119502821_+SINEAluName=AluJr4
ADediting_1014735chr3_119502822_+SINEAluName=AluJr4
ADediting_1014736chr3_119504820_+SINEAluName=AluSq2
ADediting_1014737chr3_119504826_+SINEAluName=AluSq2
ADediting_1014738chr3_119504827_+SINEAluName=AluSq2
ADediting_1014739chr3_119504835_+SINEAluName=AluSq2
ADediting_1014740chr3_119504848_+SINEAluName=AluSq2
ADediting_1014741chr3_119504901_+SINEAluName=AluSq2
ADediting_1014742chr3_119504902_+SINEAluName=AluSq2
ADediting_1014743chr3_119504913_+SINEAluName=AluSq2
ADediting_1014744chr3_119504918_+SINEAluName=AluSq2
ADediting_1014745chr3_119504931_+SINEAluName=AluSq2
ADediting_1014746chr3_119504958_+SINEAluName=AluSq2
ADediting_1014747chr3_119504963_+SINEAluName=AluSq2
ADediting_1014748chr3_119504967_+SINEAluName=AluSq2
ADediting_1014749chr3_119505417_+SINEAluName=AluSp
ADediting_1014750chr3_119505433_+SINEAluName=AluSp
ADediting_1014751chr3_119505441_+SINEAluName=AluSp
ADediting_1014752chr3_119505443_+SINEAluName=AluSp
ADediting_1014753chr3_119505444_+SINEAluName=AluSp
ADediting_1014754chr3_119505457_+SINEAluName=AluSp
ADediting_1014755chr3_119505483_+SINEAluName=AluSp
ADediting_1014756chr3_119505495_+SINEAluName=AluSp
ADediting_1014757chr3_119505505_+SINEAluName=AluSp
ADediting_1014758chr3_119505541_+SINEAluName=AluSp
ADediting_1014759chr3_119505547_+SINEAluName=AluSp
ADediting_1014760chr3_119505550_+SINEAluName=AluSp
ADediting_1014761chr3_119505555_+SINEAluName=AluSp
ADediting_1014762chr3_119505601_+SINEAluName=AluSp
ADediting_1014763chr3_119506253_+SINEAluName=AluJr
ADediting_1014764chr3_119506276_+SINEAluName=AluJr
ADediting_1014765chr3_119506298_+SINEAluName=AluJr
ADediting_1014766chr3_119506313_+SINEAluName=AluJr
ADediting_1014767chr3_119506348_+SINEAluName=AluJr
ADediting_1014768chr3_119506349_+SINEAluName=AluJr
ADediting_1014769chr3_119506398_+SINEAluName=AluJr
ADediting_1014770chr3_119506404_+SINEAluName=AluJr
ADediting_1014771chr3_119506408_+SINEAluName=AluJr
ADediting_1014772chr3_119506412_+SINEAluName=AluJr
ADediting_1014773chr3_119506444_+SINEAluName=AluJr
ADediting_1014774chr3_119506458_+SINEAluName=AluJr
ADediting_1014775chr3_119506460_+SINEAluName=AluJr
ADediting_1014776chr3_119506474_+SINEAluName=AluJr
ADediting_1014777chr3_119508928_+SINEAluName=AluSz
ADediting_1014778chr3_119508950_+SINEAluName=AluSz
ADediting_1014779chr3_119508951_+SINEAluName=AluSz
ADediting_1014780chr3_119508977_+SINEAluName=AluSz
ADediting_1014781chr3_119508981_+SINEAluName=AluSz
ADediting_1014782chr3_119509041_+SINEAluName=AluSz
ADediting_1014783chr3_119509044_+SINEAluName=AluSz
ADediting_1014784chr3_119509046_+SINEAluName=AluSz
ADediting_1014785chr3_119509050_+SINEAluName=AluSz
ADediting_1014786chr3_119509059_+SINEAluName=AluSz
ADediting_1014787chr3_119509085_+SINEAluName=AluSz
ADediting_1014788chr3_119509086_+SINEAluName=AluSz
ADediting_1014789chr3_119509095_+SINEAluName=AluSz
ADediting_1014790chr3_119509116_+SINEAluName=AluSz
ADediting_1014791chr3_119509138_+SINEAluName=AluSz
ADediting_1014792chr3_119509147_+SINEAluName=AluSz
ADediting_1014793chr3_119509156_+SINEAluName=AluSz
ADediting_1014794chr3_119509712_+SINEAluName=AluSc8
ADediting_1014795chr3_119509741_+SINEAluName=AluSc8
ADediting_1014796chr3_119509766_+SINEAluName=AluSc8
ADediting_1014797chr3_119509772_+SINEAluName=AluSc8
ADediting_1014798chr3_119509786_+SINEAluName=AluSc8
ADediting_1014799chr3_119509803_+SINEAluName=AluSc8
ADediting_1014800chr3_119509815_+SINEAluName=AluSc8
ADediting_1014801chr3_119509825_+SINEAluName=AluSc8
ADediting_1014802chr3_119509875_+SINEAluName=AluSc8
ADediting_1014803chr3_119509883_+SINEAluName=AluSc8
ADediting_1014804chr3_119509891_+SINEAluName=AluSc8
ADediting_1014805chr3_119509946_+SINEAluName=AluSc8
ADediting_1014806chr3_119511223_+SINEAluName=AluSz
ADediting_1014807chr3_119511228_+SINEAluName=AluSz
ADediting_1014808chr3_119511240_+SINEAluName=AluSz
ADediting_1014809chr3_119511291_+SINEAluName=AluSz
ADediting_1014810chr3_119511292_+SINEAluName=AluSz
ADediting_1014811chr3_119511302_+SINEAluName=AluSz
ADediting_1014812chr3_119511354_+SINEAluName=AluSz
ADediting_1014813chr3_119511360_+SINEAluName=AluSz
ADediting_1014814chr3_119511364_+SINEAluName=AluSz
ADediting_1014815chr3_119511391_+SINEAluName=AluSz
ADediting_1014816chr3_119511397_+SINEAluName=AluSz
ADediting_1014817chr3_119511398_+SINEAluName=AluSz
ADediting_1014818chr3_119511409_+SINEAluName=AluSz
ADediting_1014819chr3_119511418_+SINEAluName=AluSz
ADediting_1014820chr3_119511422_+SINEAluName=AluSz
ADediting_1014821chr3_119511426_+SINEAluName=AluSz
ADediting_1014822chr3_119511427_+SINEAluName=AluSz
ADediting_1014823chr3_119511429_+SINEAluName=AluSz
ADediting_1014824chr3_119511432_+SINEAluName=AluSz
ADediting_1014825chr3_119511456_+SINEAluName=AluSz
ADediting_1014826chr3_119511472_+SINEAluName=AluSz
ADediting_1014827chr3_119512359_+SINEAluName=AluSg
ADediting_1014828chr3_119512412_+SINEAluName=AluSg
ADediting_1014829chr3_119512462_+SINEAluName=AluSg
ADediting_1014830chr3_119512476_+SINEAluName=AluSg
ADediting_1014831chr3_119512789_+SINEAluName=AluSz6
ADediting_1014832chr3_119512799_+SINEAluName=AluSz6
ADediting_1014833chr3_119512807_+SINEAluName=AluSz6
ADediting_1014834chr3_119512842_+SINEAluName=AluSz6
ADediting_1014835chr3_119512898_+SINEAluName=AluSz6
ADediting_1014836chr3_119512924_+SINEAluName=AluSz6
ADediting_1014837chr3_119513015_+SINEAluName=AluSz6
ADediting_1014838chr3_119514980_+SINEAluName=AluSz
ADediting_1014839chr3_119515043_+SINEAluName=AluSz
ADediting_1014840chr3_119515070_+SINEAluName=AluSz
ADediting_1014841chr3_119515096_+SINEAluName=AluSz
ADediting_1014842chr3_119515141_+SINEAluName=AluSz
ADediting_1014843chr3_119515158_+SINEAluName=AluSz
ADediting_1571841chr3_119499158_+SINEAluName=AluJb
ADediting_1571842chr3_119499174_+SINEAluName=AluJb
ADediting_1571843chr3_119499583_+SINEAluName=AluSx1
ADediting_1571844chr3_119499598_+SINEAluName=AluSx1
ADediting_1571845chr3_119502293_+SINEAluName=AluJb
ADediting_1571846chr3_119502375_+SINEAluName=AluJb
ADediting_1571847chr3_119502639_+SINEAluName=AluJr4
ADediting_1571848chr3_119502645_+SINEAluName=AluJr4
ADediting_1571849chr3_119502745_+SINEAluName=AluJr4
ADediting_1571850chr3_119502753_+SINEAluName=AluJr4
ADediting_1571851chr3_119504849_+SINEAluName=AluSq2
ADediting_1571852chr3_119509020_+SINEAluName=AluSz
ADediting_1571853chr3_119509055_+SINEAluName=AluSz
ADediting_1571854chr3_119509968_+SINEAluName=AluSc8
ADediting_1571855chr3_119511186_+DNATcMar-TiggerName=Tigger2b_Pri
ADediting_1571856chr3_119511222_+SINEAluName=AluSz
ADediting_1571857chr3_119511282_+SINEAluName=AluSz
ADediting_1571858chr3_119511447_+SINEAluName=AluSz
ADediting_1571859chr3_119512841_+SINEAluName=AluSz6
ADediting_1571860chr3_119512870_+SINEAluName=AluSz6
ADediting_1571861chr3_119512880_+SINEAluName=AluSz6
ADediting_1643665chr3_119502638_+SINEAluName=AluJr4
ADediting_1643666chr3_119506439_+SINEAluName=AluJr
ADediting_1643667chr3_119512539_+SINEAluName=AluSg
ADediting_1643668chr3_119512540_+SINEAluName=AluSg

Top

RNA A-to-I editing events in the alternative splicing sites for TIMMDC1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for TIMMDC1

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
boxplot
boxplot
boxplot
boxplot
boxplot
boxplot
boxplot
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
ADeditome IDChrPositoingSkipped exonENSGENSTs

Top

Protein coding region RNA A-to-I editings for TIMMDC1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


Top

The effects of the RNA editing to the miRNA binding sites for TIMMDC1


check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1391023chr8_140732605_-ENSG00000113845.10ENST00000494664.6TIMMDC1-208hsa-miR-151a-3pchr31195250081195250158mer-1a119524993119525015162-18.94
ADediting_1535951chr14_100874558_+ENSG00000113845.10ENST00000494664.6TIMMDC1-208hsa-miR-337-3pchr31195243581195243658mer-1a119524344119524365150-13.63

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1471003chr9_63819626_+ENSG00000113845.10ENST00000494664.6TIMMDC1-208hsa-miR-4477bchr31195239501195239578mer-1a119523937119523957146-8.99
ADediting_1471004chr9_63819627_+ENSG00000113845.10ENST00000494664.6TIMMDC1-208hsa-miR-4477bchr31195239501195239578mer-1a119523937119523957146-8.99
ADediting_1556067chr19_40282625_-ENSG00000113845.10ENST00000494664.6TIMMDC1-208hsa-miR-641chr31195247781195247847mer-m8119524762119524785150-15.12
ADediting_1631458chr19_40282624_-ENSG00000113845.10ENST00000494664.6TIMMDC1-208hsa-miR-641chr31195247781195247847mer-m8119524762119524785150-15.12

check button Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for TIMMDC1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

Top

Relation with ADAR for TIMMDC1

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
CERADediting_1014716chr3_119499601_+0.0008966452040247260.2684179748844289.58087010406154e-060.3526836272173230.02339328250526360.185042188877222
CERADediting_1014725chr3_119502688_+0.0002778025568680280.2927300284382396.10378286608469e-050.321280998501190.775059071690686-0.0235260893808804
CERADediting_1014726chr3_119502692_+3.13839949410175e-050.3329572978153861.03782310529144e-050.3513955113253820.6207395264225660.0407243677754406
CERADediting_1014735chr3_119502822_+0.001317014445935730.2599299720398724.88747232738833e-070.3970609993408660.05775219083793140.155294091824879
DLPFCADediting_1014797chr3_119509772_+0.005475646566135340.1574101790320950.315249377896330.05722301563656712.36148184501493e-160.443279457090458
DLPFCADediting_1014805chr3_119509946_+0.001809676230839960.1765130516063470.4101035943799810.0469475149777181.26021068658664e-180.472262840208674
DLPFCADediting_1014807chr3_119511228_+0.115652872276150.08953872468705680.566263267492582-0.0326995989177011.36442762302423e-160.446450195746688
DLPFCADediting_1014812chr3_119511354_+0.9993654961357824.53493856785854e-050.0620634247341341-0.1061020345118094.76650232666804e-180.4651519235665
DLPFCADediting_1014828chr3_119512412_+0.489790656388703-0.03936965312110330.0232017856040716-0.1289150977724661.03937357267483e-100.356293154774623
DLPFCADediting_1014829chr3_119512462_+0.2769788993787740.06193580369447770.727627955478467-0.01985939887473881.34461204565996e-100.354280300710891
DLPFCADediting_1014836chr3_119512924_+0.0238040661815290.1283621462081120.7444261491166710.01858891584000791.38212479629866e-120.388129510976561
CERADediting_1571844chr3_119499598_+0.0001122182308614030.3101555782062811.11011791213972e-050.350306051705240.002438636463697830.245718184933018

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFC1.31247986697344e-350.6294134492528136.51514077635113e-350.6244015906685588.35240241305419e-120.375292892431112
AC1.84952966717795e-480.7607442248453682.09274000781644e-280.6241954517280932.77750728347023e-240.584292307474869
PCC4.53442042044625e-130.4926103505043423.9132697381564e-130.4937877793858810.001853808020908290.223832130238059
CER2.83961650454564e-060.3716186977926636.83930197377262e-050.3192352314003052.33728768113459e-070.407124940613492
TCX1.34197007474558e-100.493886420992430.4855430902257360.05737674738714124.55657773737777e-190.645795494783571
FP5.31442863860452e-130.5067320221758971.33853558784452e-150.5522526957527190.1757870272497180.101928313603529
IFG0.002674856887545880.5743872430629740.01333356198165220.4879921008005540.8511174552532930.0395487080977963
PG2.43070004163091e-420.7980730201986661.01936025380854e-160.5595836764278260.360630322551920.0674079459957903
STG1.36498863712901e-150.7367731167189655.59786436968042e-100.6132573282132570.3151300296021020.110925068088876

Top

Relation with AD stages for TIMMDC1

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.
TCX0.0002372162348966530.349812849907115
STG0.00474286707416645-0.305304924211387

Top

RelatedDrugs for TIMMDC1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for TIMMDC1

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource