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![]() | Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for CISD2 |
Gene summary |
| Gene information | Gene symbol | CISD2 | Gene ID | 493856 |
| Gene name | CDGSH iron sulfur domain 2 | |
| Synonyms | ERIS|Miner1|NAF-1|WFS2|ZCD2 | |
| Cytomap | 4q24 | |
| Type of gene | protein-coding | |
| Description | CDGSH iron-sulfur domain-containing protein 2endoplasmic reticulum intermembrane small proteinmitoNEET-related 1 proteinnutrient-deprivation autophagy factor-1zinc finger, CDGSH-type domain 2 | |
| Modification date | 20200313 | |
| UniProtAcc | Q8N5K1, | |
| Context |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for CISD2 |
RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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RNA editing frequencies across three data sets. |
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The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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RNA A-to-I editing events in AD. |
| ADediting_1101204(102872143, +), ADediting_1101205(102872148, +), ADediting_1101206(102872186, +), ADediting_1101207(102872194, +), ADediting_1101208(102872253, +), ADediting_1101209(102873289, +), ADediting_1101210(102873290, +), ADediting_1101211(102873298, +), ADediting_1101212(102873372, +), ADediting_1101213(102873384, +), ADediting_1101214(102873389, +), ADediting_1101215(102873401, +), ADediting_1101216(102873411, +), ADediting_1101217(102873413, +), ADediting_1101218(102873419, +), ADediting_1101219(102873458, +), ADediting_1101220(102873484, +), ADediting_1101221(102873706, +), ADediting_1101222(102873870, +), ADediting_1101223(102873887, +), ADediting_1101224(102873926, +), ADediting_1101225(102873973, +), ADediting_1101226(102873974, +), ADediting_1101227(102873992, +), ADediting_1101228(102873997, +), ADediting_1101229(102874019, +), ADediting_1101230(102874032, +), ADediting_1101231(102874113, +), ADediting_1101232(102876494, +), ADediting_1101233(102876495, +), ADediting_1101234(102876509, +), ADediting_1101235(102876516, +), ADediting_1101236(102876517, +), ADediting_1101237(102876552, +), ADediting_1101238(102876570, +), ADediting_1101239(102876572, +), ADediting_1101240(102876577, +), ADediting_1101241(102876603, +), ADediting_1101242(102876643, +), ADediting_1101243(102876699, +), ADediting_1101244(102878167, +), ADediting_1101245(102878235, +), ADediting_1101246(102878236, +), ADediting_1101247(102878271, +), ADediting_1101248(102878311, +), ADediting_1101249(102878314, +), ADediting_1101250(102878397, +), ADediting_1101251(102879527, +), ADediting_1101252(102879528, +), ADediting_1101253(102879965, +), ADediting_1101254(102880012, +), ADediting_1101255(102880043, +), ADediting_1101256(102880082, +), ADediting_1101257(102880179, +), ADediting_1101258(102880196, +), ADediting_1101259(102880218, +), ADediting_1101260(102880760, +), ADediting_1101261(102880798, +), ADediting_1101262(102881930, +), ADediting_1101263(102881942, +), ADediting_1101264(102881963, +), ADediting_1101265(102881982, +), ADediting_1101266(102882071, +), ADediting_1101267(102882081, +), ADediting_1101268(102882148, +), ADediting_1101269(102882803, +), ADediting_1101270(102882808, +), ADediting_1101271(102882847, +), ADediting_1101272(102882876, +), ADediting_1101273(102882886, +), ADediting_1101274(102882957, +), ADediting_1101275(102882976, +), ADediting_1575916(102876705, +), |
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RNA editing positional annotations for CISD2 using Annovar |
Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| ADediting_1101269 | chr4_102882803_+ | nonsynonymous SNV | ENST00000574446.1 | c.A136G | p.M46V | . | . | . |
| ADediting_1101269 | chr4_102882803_+ | nonsynonymous SNV | ENST00000646632.1 | c.A115G | p.M39V | . | . | . |
| ADediting_1101270 | chr4_102882808_+ | synonymous SNV | ENST00000574446.1 | c.A141G | p.A47A | . | . | . |
| ADediting_1101270 | chr4_102882808_+ | synonymous SNV | ENST00000646632.1 | c.A120G | p.A40A | . | . | . |
Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1101204 | chr4_102872143_+ | intronic |
| ADediting_1101205 | chr4_102872148_+ | intronic |
| ADediting_1101206 | chr4_102872186_+ | intronic |
| ADediting_1101207 | chr4_102872194_+ | intronic |
| ADediting_1101208 | chr4_102872253_+ | intronic |
| ADediting_1101209 | chr4_102873289_+ | intronic |
| ADediting_1101210 | chr4_102873290_+ | intronic |
| ADediting_1101211 | chr4_102873298_+ | intronic |
| ADediting_1101212 | chr4_102873372_+ | intronic |
| ADediting_1101213 | chr4_102873384_+ | intronic |
| ADediting_1101214 | chr4_102873389_+ | intronic |
| ADediting_1101215 | chr4_102873401_+ | intronic |
| ADediting_1101216 | chr4_102873411_+ | intronic |
| ADediting_1101217 | chr4_102873413_+ | intronic |
| ADediting_1101218 | chr4_102873419_+ | intronic |
| ADediting_1101219 | chr4_102873458_+ | intronic |
| ADediting_1101220 | chr4_102873484_+ | intronic |
| ADediting_1101221 | chr4_102873706_+ | intronic |
| ADediting_1101222 | chr4_102873870_+ | intronic |
| ADediting_1101223 | chr4_102873887_+ | intronic |
| ADediting_1101224 | chr4_102873926_+ | intronic |
| ADediting_1101225 | chr4_102873973_+ | intronic |
| ADediting_1101226 | chr4_102873974_+ | intronic |
| ADediting_1101227 | chr4_102873992_+ | intronic |
| ADediting_1101228 | chr4_102873997_+ | intronic |
| ADediting_1101229 | chr4_102874019_+ | intronic |
| ADediting_1101230 | chr4_102874032_+ | intronic |
| ADediting_1101231 | chr4_102874113_+ | intronic |
| ADediting_1101232 | chr4_102876494_+ | intronic |
| ADediting_1101233 | chr4_102876495_+ | intronic |
| ADediting_1101234 | chr4_102876509_+ | intronic |
| ADediting_1101235 | chr4_102876516_+ | intronic |
| ADediting_1101236 | chr4_102876517_+ | intronic |
| ADediting_1101237 | chr4_102876552_+ | intronic |
| ADediting_1101238 | chr4_102876570_+ | intronic |
| ADediting_1101239 | chr4_102876572_+ | intronic |
| ADediting_1101240 | chr4_102876577_+ | intronic |
| ADediting_1101241 | chr4_102876603_+ | intronic |
| ADediting_1101242 | chr4_102876643_+ | intronic |
| ADediting_1101243 | chr4_102876699_+ | intronic |
| ADediting_1101244 | chr4_102878167_+ | intronic |
| ADediting_1101245 | chr4_102878235_+ | intronic |
| ADediting_1101246 | chr4_102878236_+ | intronic |
| ADediting_1101247 | chr4_102878271_+ | intronic |
| ADediting_1101248 | chr4_102878311_+ | intronic |
| ADediting_1101249 | chr4_102878314_+ | intronic |
| ADediting_1101250 | chr4_102878397_+ | intronic |
| ADediting_1101251 | chr4_102879527_+ | intronic |
| ADediting_1101252 | chr4_102879528_+ | intronic |
| ADediting_1101253 | chr4_102879965_+ | intronic |
| ADediting_1101254 | chr4_102880012_+ | intronic |
| ADediting_1101255 | chr4_102880043_+ | intronic |
| ADediting_1101256 | chr4_102880082_+ | intronic |
| ADediting_1101257 | chr4_102880179_+ | intronic |
| ADediting_1101258 | chr4_102880196_+ | intronic |
| ADediting_1101259 | chr4_102880218_+ | intronic |
| ADediting_1101260 | chr4_102880760_+ | intronic |
| ADediting_1101261 | chr4_102880798_+ | intronic |
| ADediting_1101262 | chr4_102881930_+ | intronic |
| ADediting_1101263 | chr4_102881942_+ | intronic |
| ADediting_1101264 | chr4_102881963_+ | intronic |
| ADediting_1101265 | chr4_102881982_+ | intronic |
| ADediting_1101266 | chr4_102882071_+ | intronic |
| ADediting_1101267 | chr4_102882081_+ | intronic |
| ADediting_1101268 | chr4_102882148_+ | intronic |
| ADediting_1101269 | chr4_102882803_+ | exonic |
| ADediting_1101270 | chr4_102882808_+ | exonic |
| ADediting_1101271 | chr4_102882847_+ | UTR3 |
| ADediting_1101272 | chr4_102882876_+ | intronic |
| ADediting_1101273 | chr4_102882886_+ | intronic |
| ADediting_1101274 | chr4_102882957_+ | intronic |
| ADediting_1101275 | chr4_102882976_+ | intronic |
| ADediting_1575916 | chr4_102876705_+ | intronic |
Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1101204 | chr4_102872143_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1101205 | chr4_102872148_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1101206 | chr4_102872186_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1101207 | chr4_102872194_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1101208 | chr4_102872253_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1101209 | chr4_102873289_+ | SINE | Alu | Name=AluJb |
| ADediting_1101210 | chr4_102873290_+ | SINE | Alu | Name=AluJb |
| ADediting_1101211 | chr4_102873298_+ | SINE | Alu | Name=AluJb |
| ADediting_1101212 | chr4_102873372_+ | SINE | Alu | Name=AluJb |
| ADediting_1101213 | chr4_102873384_+ | SINE | Alu | Name=AluJb |
| ADediting_1101214 | chr4_102873389_+ | SINE | Alu | Name=AluJb |
| ADediting_1101215 | chr4_102873401_+ | SINE | Alu | Name=AluJb |
| ADediting_1101216 | chr4_102873411_+ | SINE | Alu | Name=AluJb |
| ADediting_1101217 | chr4_102873413_+ | SINE | Alu | Name=AluJb |
| ADediting_1101218 | chr4_102873419_+ | SINE | Alu | Name=AluJb |
| ADediting_1101219 | chr4_102873458_+ | SINE | Alu | Name=AluJb |
| ADediting_1101220 | chr4_102873484_+ | SINE | Alu | Name=AluJb |
| ADediting_1101221 | chr4_102873706_+ | SINE | Alu | Name=FLAM_A |
| ADediting_1101222 | chr4_102873870_+ | SINE | Alu | Name=AluSz |
| ADediting_1101223 | chr4_102873887_+ | SINE | Alu | Name=AluSz |
| ADediting_1101224 | chr4_102873926_+ | SINE | Alu | Name=AluSz |
| ADediting_1101225 | chr4_102873973_+ | SINE | Alu | Name=AluSz |
| ADediting_1101226 | chr4_102873974_+ | SINE | Alu | Name=AluSz |
| ADediting_1101227 | chr4_102873992_+ | SINE | Alu | Name=AluSz |
| ADediting_1101228 | chr4_102873997_+ | SINE | Alu | Name=AluSz |
| ADediting_1101229 | chr4_102874019_+ | SINE | Alu | Name=AluSz |
| ADediting_1101230 | chr4_102874032_+ | SINE | Alu | Name=AluSz |
| ADediting_1101231 | chr4_102874113_+ | SINE | Alu | Name=AluSz |
| ADediting_1101232 | chr4_102876494_+ | SINE | Alu | Name=AluSc |
| ADediting_1101233 | chr4_102876495_+ | SINE | Alu | Name=AluSc |
| ADediting_1101234 | chr4_102876509_+ | SINE | Alu | Name=AluSc |
| ADediting_1101235 | chr4_102876516_+ | SINE | Alu | Name=AluSc |
| ADediting_1101236 | chr4_102876517_+ | SINE | Alu | Name=AluSc |
| ADediting_1101237 | chr4_102876552_+ | SINE | Alu | Name=AluSc |
| ADediting_1101238 | chr4_102876570_+ | SINE | Alu | Name=AluSc |
| ADediting_1101239 | chr4_102876572_+ | SINE | Alu | Name=AluSc |
| ADediting_1101240 | chr4_102876577_+ | SINE | Alu | Name=AluSc |
| ADediting_1101241 | chr4_102876603_+ | SINE | Alu | Name=AluSc |
| ADediting_1101242 | chr4_102876643_+ | SINE | Alu | Name=AluSc |
| ADediting_1101243 | chr4_102876699_+ | SINE | Alu | Name=AluSc |
| ADediting_1101244 | chr4_102878167_+ | SINE | Alu | Name=AluSc |
| ADediting_1101245 | chr4_102878235_+ | SINE | Alu | Name=AluSc |
| ADediting_1101246 | chr4_102878236_+ | SINE | Alu | Name=AluSc |
| ADediting_1101247 | chr4_102878271_+ | SINE | Alu | Name=AluSc |
| ADediting_1101248 | chr4_102878311_+ | SINE | Alu | Name=AluSc |
| ADediting_1101249 | chr4_102878314_+ | SINE | Alu | Name=AluSc |
| ADediting_1101250 | chr4_102878397_+ | SINE | Alu | Name=AluSc |
| ADediting_1101251 | chr4_102879527_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1101252 | chr4_102879528_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1101253 | chr4_102879965_+ | SINE | Alu | Name=AluSz |
| ADediting_1101254 | chr4_102880012_+ | SINE | Alu | Name=AluSz |
| ADediting_1101255 | chr4_102880043_+ | SINE | Alu | Name=AluSz |
| ADediting_1101256 | chr4_102880082_+ | SINE | Alu | Name=AluSz |
| ADediting_1101257 | chr4_102880179_+ | SINE | Alu | Name=AluSz |
| ADediting_1101258 | chr4_102880196_+ | SINE | Alu | Name=AluSz |
| ADediting_1101259 | chr4_102880218_+ | SINE | Alu | Name=AluSz |
| ADediting_1101260 | chr4_102880760_+ | SINE | Alu | Name=AluSx |
| ADediting_1101261 | chr4_102880798_+ | SINE | Alu | Name=AluSx |
| ADediting_1101262 | chr4_102881930_+ | SINE | Alu | Name=AluSq |
| ADediting_1101263 | chr4_102881942_+ | SINE | Alu | Name=AluSq |
| ADediting_1101264 | chr4_102881963_+ | SINE | Alu | Name=AluSq |
| ADediting_1101265 | chr4_102881982_+ | SINE | Alu | Name=AluSq |
| ADediting_1101266 | chr4_102882071_+ | SINE | Alu | Name=AluSq |
| ADediting_1101267 | chr4_102882081_+ | SINE | Alu | Name=AluSq |
| ADediting_1101268 | chr4_102882148_+ | SINE | Alu | Name=AluSq |
| ADediting_1101269 | chr4_102882803_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1101270 | chr4_102882808_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1101271 | chr4_102882847_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1101272 | chr4_102882876_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1101273 | chr4_102882886_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1101274 | chr4_102882957_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1101275 | chr4_102882976_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1575916 | chr4_102876705_+ | SINE | Alu | Name=AluSc |
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RNA A-to-I editing events in the alternative splicing sites for CISD2 |
RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| ES | ADediting_1101272 | chr4_102882876_+ | 102882871:102882879 | 5ss | 3i | CAGGTAGCT | 6.52 | CAGGTGGCT | 2.97 |
| ES | ADediting_1101272 | chr4_102882876_+ | 102882871:102882879 | 5ss | 3i | CAGGTAGCT | 6.52 | CAGGTGGCT | 2.97 |
Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CISD2 |
Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.* The grey color means N/A. |
Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.* Click on the image to enlarge it in a new window. |
- Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.* Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for CISD2 |
- Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for CISD2 |
RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-5688 | chr4 | 102891989 | 102891995 | 7mer-m8 | 102891975 | 102891996 | 153 | -13.09 |
| ADediting_1337758 | chr7_5495892_- | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-589-5p | chr4 | 102889466 | 102889473 | 8mer-1a | 102889452 | 102889473 | 150 | -21.48 |
| ADediting_1535951 | chr14_100874558_+ | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-337-3p | chr4 | 102889486 | 102889492 | 7mer-m8 | 102889472 | 102889493 | 148 | -14.04 |
| ADediting_1535951 | chr14_100874558_+ | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-337-3p | chr4 | 102890257 | 102890264 | 8mer-1a | 102890243 | 102890264 | 146 | -10.41 |
| ADediting_286380 | chr11_79422188_- | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-5579-3p | chr4 | 102890263 | 102890269 | 7mer-1a | 102890256 | 102890278 | 146 | -15.22 |
| ADediting_286380 | chr11_79422188_- | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-5579-3p | chr4 | 102890271 | 102890277 | 7mer-m8 | 102890256 | 102890278 | 146 | -15.22 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-4775 | chr4 | 102887645 | 102887651 | 7mer-m8 | 102887630 | 102887652 | 156 | -8.77 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-4775 | chr4 | 102891826 | 102891832 | 7mer-m8 | 102891812 | 102891833 | 159 | -9.92 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000145354.12 | ENST00000503643.1 | CISD2-202 | hsa-miR-4775 | chr4 | 102887645 | 102887651 | 7mer-m8 | 102887630 | 102887652 | 156 | -8.77 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-5585-3p | chr4 | 102890028 | 102890034 | 7mer-m8 | 102890010 | 102890035 | 143 | -18.47 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-5585-3p | chr4 | 102891674 | 102891681 | 8mer-1a | 102891661 | 102891681 | 148 | -15.43 |
RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-5688 | chr4 | 102887703 | 102887709 | 7mer-m8 | 102887689 | 102887710 | 155 | -10.6 |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000145354.12 | ENST00000503643.1 | CISD2-202 | hsa-miR-5688 | chr4 | 102887703 | 102887709 | 7mer-m8 | 102887689 | 102887710 | 155 | -10.6 |
| ADediting_1535951 | chr14_100874558_+ | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-337-3p | chr4 | 102891422 | 102891428 | 7mer-m8 | 102891408 | 102891429 | 153 | -9.28 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-381-3p | chr4 | 102887739 | 102887745 | 7mer-m8 | 102887725 | 102887746 | 144 | -12.96 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-381-3p | chr4 | 102889020 | 102889026 | 7mer-m8 | 102889006 | 102889027 | 147 | -12.22 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000145354.12 | ENST00000503643.1 | CISD2-202 | hsa-miR-381-3p | chr4 | 102887739 | 102887745 | 7mer-m8 | 102887725 | 102887746 | 144 | -12.96 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-381-3p | chr4 | 102887739 | 102887745 | 7mer-m8 | 102887725 | 102887746 | 144 | -12.96 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-381-3p | chr4 | 102889020 | 102889026 | 7mer-m8 | 102889006 | 102889027 | 147 | -12.22 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000145354.12 | ENST00000503643.1 | CISD2-202 | hsa-miR-381-3p | chr4 | 102887739 | 102887745 | 7mer-m8 | 102887725 | 102887746 | 144 | -12.96 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-641 | chr4 | 102889937 | 102889943 | 7mer-m8 | 102889918 | 102889944 | 153 | -15.73 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-641 | chr4 | 102889937 | 102889943 | 7mer-m8 | 102889918 | 102889944 | 153 | -15.73 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-5585-3p | chr4 | 102887566 | 102887572 | 7mer-m8 | 102887550 | 102887573 | 146 | -17.52 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-5585-3p | chr4 | 102891522 | 102891528 | 7mer-1a | 102891507 | 102891528 | 146 | -14.78 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000145354.12 | ENST00000503643.1 | CISD2-202 | hsa-miR-5585-3p | chr4 | 102887566 | 102887572 | 7mer-m8 | 102887550 | 102887573 | 146 | -17.52 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-5585-3p | chr4 | 102887566 | 102887572 | 7mer-m8 | 102887550 | 102887573 | 146 | -17.52 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000145354.12 | ENST00000273986.10 | CISD2-201 | hsa-miR-5585-3p | chr4 | 102891522 | 102891528 | 7mer-1a | 102891507 | 102891528 | 146 | -14.78 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000145354.12 | ENST00000503643.1 | CISD2-202 | hsa-miR-5585-3p | chr4 | 102887566 | 102887572 | 7mer-m8 | 102887550 | 102887573 | 146 | -17.52 |
Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for CISD2 |
- RNA A-to-I editing in mRNA.* Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for CISD2 |
Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | ADediting_1101210 | chr4_102873290_+ | 0.0888164387916614 | 0.0968125583322427 | 0.677209259258857 | -0.0237353481918433 | 1.64908402854074e-10 | 0.352674536703495 |
| DLPFC | ADediting_1101212 | chr4_102873372_+ | 0.0597901788784187 | 0.107034678843818 | 0.777275167927235 | -0.0161301511161625 | 3.98457961404825e-10 | 0.345628000957733 |
| DLPFC | ADediting_1101217 | chr4_102873413_+ | 0.163522237090845 | 0.0793311176858129 | 0.610803710589378 | -0.0290162169503215 | 2.69541424256028e-11 | 0.366618934819616 |
| DLPFC | ADediting_1101218 | chr4_102873419_+ | 0.158224202307775 | 0.080338298815608 | 0.864423573448181 | 0.00973681970816169 | 3.13999182010203e-09 | 0.328415159073464 |
Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 5.75025676591319e-60 | 0.761557948351501 | 1.4025810757457e-46 | 0.697981056058409 | 0.125905032090719 | 0.087110393795182 |
| AC | 3.21156963592096e-66 | 0.834778030586699 | 5.47798139002563e-42 | 0.724653886496753 | 5.70771353310752e-16 | 0.482310388363647 |
| PCC | 8.17475498308347e-34 | 0.735704464726962 | 9.29350648714316e-37 | 0.756896655650387 | 0.0922627838097956 | 0.122164819865151 |
| CER | 1.65294313193349e-19 | 0.651855079798096 | 3.20862788592823e-19 | 0.647906935587409 | 0.129787730603041 | 0.124253867989443 |
| TCX | 7.58631934558304e-35 | 0.801373789891567 | 1.60351036444187e-17 | 0.623376253812264 | 0.173470223029028 | 0.111722764683122 |
| FP | 3.76045693943556e-05 | 0.303745316915722 | 4.45161504955283e-15 | 0.543643670601597 | 0.258472405593666 | -0.0851437203349566 |
| IFG | 0.000217439384554883 | 0.67451168700815 | 0.00211778230621402 | 0.585245679626874 | 0.506404302418119 | -0.139373848044883 |
| PG | 9.3951008391923e-38 | 0.770003041989103 | 3.10207314929665e-22 | 0.633193496519736 | 0.301945212008901 | -0.0760929454616074 |
| STG | 4.25539241374649e-08 | 0.555110675821502 | 2.3602043968332e-11 | 0.64937719168118 | 0.0243473853743711 | -0.245574628849473 |
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Relation with AD stages for CISD2 |
Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
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RelatedDrugs for CISD2 |
Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CISD2 |
Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
| CISD2 | C0043207 | Wolfram Syndrome | 6 | CLINGEN;ORPHANET |
| CISD2 | C0011860 | Diabetes Mellitus, Non-Insulin-Dependent | 1 | CTD_human |
| CISD2 | C1858028 | WOLFRAM SYNDROME 2 | 1 | CTD_human |