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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for HCG11 |
 Gene summary |
| Gene information | Gene symbol | HCG11 | Gene ID | 493812 |
| Gene name | HLA complex group 11 | |
| Synonyms | CTA-14H9.3|bK14H9.3 | |
| Cytomap | 6p22.2 | |
| Type of gene | ncRNA | |
| Description | HLA complex group 11 (non-protein coding) | |
| Modification date | 20200313 | |
| UniProtAcc | ||
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for HCG11 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_1253581(26525384, +), ADediting_1253582(26525385, +), ADediting_1253583(26525415, +), ADediting_1253584(26525424, +), ADediting_1253585(26525429, +), ADediting_1253586(26525451, +), ADediting_1253587(26525452, +), ADediting_1253588(26525491, +), ADediting_1253589(26525527, +), ADediting_1253590(26525544, +), ADediting_1253591(26525582, +), ADediting_1253592(26525583, +), ADediting_1253593(26526353, +), |
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RNA editing positional annotations for HCG11 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1253581 | chr6_26525384_+ | ncRNA_exonic |
| ADediting_1253582 | chr6_26525385_+ | ncRNA_exonic |
| ADediting_1253583 | chr6_26525415_+ | ncRNA_exonic |
| ADediting_1253584 | chr6_26525424_+ | ncRNA_exonic |
| ADediting_1253585 | chr6_26525429_+ | ncRNA_exonic |
| ADediting_1253586 | chr6_26525451_+ | ncRNA_exonic |
| ADediting_1253587 | chr6_26525452_+ | ncRNA_exonic |
| ADediting_1253588 | chr6_26525491_+ | ncRNA_exonic |
| ADediting_1253589 | chr6_26525527_+ | ncRNA_exonic |
| ADediting_1253590 | chr6_26525544_+ | ncRNA_exonic |
| ADediting_1253591 | chr6_26525582_+ | ncRNA_exonic |
| ADediting_1253592 | chr6_26525583_+ | ncRNA_exonic |
| ADediting_1253593 | chr6_26526353_+ | ncRNA_exonic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1253581 | chr6_26525384_+ | SINE | Alu | Name=AluSc |
| ADediting_1253582 | chr6_26525385_+ | SINE | Alu | Name=AluSc |
| ADediting_1253583 | chr6_26525415_+ | SINE | Alu | Name=AluSc |
| ADediting_1253584 | chr6_26525424_+ | SINE | Alu | Name=AluSc |
| ADediting_1253585 | chr6_26525429_+ | SINE | Alu | Name=AluSc |
| ADediting_1253586 | chr6_26525451_+ | SINE | Alu | Name=AluSc |
| ADediting_1253587 | chr6_26525452_+ | SINE | Alu | Name=AluSc |
| ADediting_1253588 | chr6_26525491_+ | SINE | Alu | Name=AluSc |
| ADediting_1253589 | chr6_26525527_+ | SINE | Alu | Name=AluSc |
| ADediting_1253590 | chr6_26525544_+ | SINE | Alu | Name=AluSc |
| ADediting_1253591 | chr6_26525582_+ | SINE | Alu | Name=AluSc |
| ADediting_1253592 | chr6_26525583_+ | SINE | Alu | Name=AluSc |
| ADediting_1253593 | chr6_26526353_+ | SINE | Alu | Name=AluSc |
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RNA A-to-I editing events in the alternative splicing sites for HCG11 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for HCG11 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |