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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for HAPLN4 |
 Gene summary |
| Gene information | Gene symbol | HAPLN4 | Gene ID | 404037 |
| Gene name | hyaluronan and proteoglycan link protein 4 | |
| Synonyms | BRAL2 | |
| Cytomap | 19p13.11 | |
| Type of gene | protein-coding | |
| Description | hyaluronan and proteoglycan link protein 4brain link protein 2 | |
| Modification date | 20200313 | |
| UniProtAcc | Q86UW8, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for HAPLN4 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_726139(19254855, -), ADediting_726140(19254878, -), ADediting_726141(19254885, -), ADediting_726142(19254886, -), ADediting_726143(19254902, -), ADediting_726144(19255286, -), ADediting_726145(19255302, -), |
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RNA editing positional annotations for HAPLN4 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_726139 | chr19_19254855_- | ncRNA_exonic |
| ADediting_726140 | chr19_19254878_- | ncRNA_exonic |
| ADediting_726141 | chr19_19254885_- | ncRNA_exonic |
| ADediting_726142 | chr19_19254886_- | ncRNA_exonic |
| ADediting_726143 | chr19_19254902_- | ncRNA_exonic |
| ADediting_726144 | chr19_19255286_- | ncRNA_exonic |
| ADediting_726145 | chr19_19255302_- | ncRNA_exonic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_726139 | chr19_19254855_- | SINE | Alu | Name=FRAM |
| ADediting_726140 | chr19_19254878_- | SINE | Alu | Name=FRAM |
| ADediting_726141 | chr19_19254885_- | SINE | Alu | Name=FRAM |
| ADediting_726142 | chr19_19254886_- | SINE | Alu | Name=FRAM |
| ADediting_726143 | chr19_19254902_- | SINE | Alu | Name=FRAM |
| ADediting_726144 | chr19_19255286_- | SINE | Alu | Name=AluSx1 |
| ADediting_726145 | chr19_19255302_- | SINE | Alu | Name=AluSx1 |
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RNA A-to-I editing events in the alternative splicing sites for HAPLN4 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for HAPLN4 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |