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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited versus non-edited samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with AD stages

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene


Gene summary for LINC01118

check button Gene summary
Gene informationGene symbol

LINC01118

Gene ID

388948

Gene namelong intergenic non-protein coding RNA 1118
Synonyms-
Cytomap

2p21

Type of genencRNA
Description-
Modification date20200313
UniProtAcc

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for LINC01118

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_878726(46709016, +), ADediting_878727(46710635, +), ADediting_878728(46713149, +), ADediting_878729(46715224, +), ADediting_878730(46715228, +), ADediting_878731(46715250, +), ADediting_878732(46715251, +), ADediting_878733(46715292, +), ADediting_878734(46716639, +), ADediting_878735(46728804, +), ADediting_878736(46733300, +), ADediting_878737(46733357, +), ADediting_878738(46733427, +), ADediting_878739(46733453, +), ADediting_878740(46733470, +), ADediting_878741(46733476, +), ADediting_878742(46733488, +), ADediting_878743(46733493, +), ADediting_878744(46733498, +), ADediting_878745(46757815, +), ADediting_878746(46763614, +), ADediting_878747(46763684, +), ADediting_878748(46763701, +), ADediting_878749(46763713, +), ADediting_878750(46763723, +), ADediting_878751(46763725, +), ADediting_878752(46763749, +), ADediting_878753(46763750, +), ADediting_878754(46763764, +), ADediting_878755(46763806, +), ADediting_878756(46763842, +), ADediting_878757(46763843, +), ADediting_878758(46763849, +), ADediting_878759(46763855, +), ADediting_878760(46763861, +), ADediting_878761(46765173, +), ADediting_878762(46765177, +), ADediting_878763(46765189, +), ADediting_878764(46765195, +), ADediting_878765(46765201, +), ADediting_878766(46765218, +), ADediting_878767(46765232, +), ADediting_878768(46765256, +), ADediting_878769(46765273, +), ADediting_878770(46765274, +), ADediting_878771(46765281, +), ADediting_878772(46765301, +), ADediting_878773(46765327, +), ADediting_878774(46765337, +), ADediting_878775(46767259, +), ADediting_878776(46767265, +), ADediting_878777(46767284, +), ADediting_878778(46767285, +), ADediting_878779(46767288, +), ADediting_878780(46767289, +), ADediting_878781(46767302, +), ADediting_878782(46767314, +), ADediting_878783(46767326, +), ADediting_878784(46767350, +), ADediting_878785(46767351, +), ADediting_878786(46767359, +), ADediting_878787(46767365, +), ADediting_878788(46767368, +), ADediting_878789(46767371, +), ADediting_878790(46767372, +), ADediting_878791(46767394, +), ADediting_878792(46767407, +), ADediting_878793(46767419, +), ADediting_878794(46767432, +), ADediting_878795(46767446, +), ADediting_878796(46767447, +), ADediting_878797(46767459, +), ADediting_878798(46769259, +), ADediting_878799(46769269, +), ADediting_878800(46769271, +), ADediting_878801(46769278, +), ADediting_878802(46769331, +), ADediting_878803(46769332, +), ADediting_878804(46769368, +), ADediting_878805(46769383, +), ADediting_878806(46769386, +), ADediting_878807(46769412, +), ADediting_878808(46769413, +), ADediting_878809(46769418, +), ADediting_878810(46769422, +), ADediting_878811(46769435, +), ADediting_878812(46769439, +), ADediting_878813(46769445, +), ADediting_878814(46769452, +), ADediting_878815(46769453, +), ADediting_878816(46769454, +), ADediting_878817(46769461, +), ADediting_878818(46769465, +), ADediting_878819(46769478, +), ADediting_878820(46769482, +), ADediting_878821(46769483, +), ADediting_878822(46769498, +), ADediting_878823(46772090, +), ADediting_878824(46772577, +), ADediting_878825(46772589, +), ADediting_878826(46772594, +), ADediting_878827(46772636, +), ADediting_878828(46772657, +), ADediting_878829(46772659, +), ADediting_878830(46773393, +), ADediting_878831(46774398, +), ADediting_878832(46774406, +), ADediting_878833(46774424, +), ADediting_878834(46774558, +), ADediting_878835(46775326, +), ADediting_878836(46775330, +), ADediting_878837(46775339, +), ADediting_878838(46775349, +), ADediting_878839(46775358, +), ADediting_878840(46775364, +), ADediting_878841(46775366, +), ADediting_878842(46775380, +), ADediting_878843(46775395, +), ADediting_878844(46775397, +), ADediting_878845(46775413, +), ADediting_878846(46775436, +), ADediting_878847(46775449, +), ADediting_878848(46777350, +), ADediting_878849(46777376, +), ADediting_878850(46777390, +), ADediting_878851(46777403, +), ADediting_878852(46777409, +), ADediting_878853(46777821, +), ADediting_878854(46777921, +), ADediting_878855(46777922, +), ADediting_878856(46777952, +), ADediting_878857(46777962, +), ADediting_878858(46777963, +), ADediting_878859(46778008, +), ADediting_878860(46787975, +), ADediting_878861(46788091, +), ADediting_878862(46788110, +), ADediting_878863(46788115, +), ADediting_878864(46788131, +), ADediting_878865(46788134, +), ADediting_878866(46788135, +), ADediting_878867(46788206, +), ADediting_878868(46788260, +), ADediting_878869(46788435, +), ADediting_878870(46807920, +), ADediting_878871(46807936, +), ADediting_1563571(46763781, +), ADediting_1563572(46774528, +), ADediting_1563573(46774554, +), ADediting_1563574(46775396, +), ADediting_1637759(46713123, +), ADediting_1637760(46713130, +), ADediting_1637761(46713136, +), ADediting_1637762(46713172, +), ADediting_1637763(46713174, +), ADediting_1637764(46713209, +), ADediting_1637765(46713245, +), ADediting_1637766(46713249, +), ADediting_1637767(46715159, +), ADediting_1637768(46715232, +), ADediting_1637769(46715267, +), ADediting_1637770(46715273, +), ADediting_1637771(46716607, +), ADediting_1637772(46728657, +), ADediting_1637773(46728685, +), ADediting_1637774(46730441, +),

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RNA editing positional annotations for LINC01118 using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_878726chr2_46709016_+ncRNA_intronic
ADediting_878727chr2_46710635_+ncRNA_intronic
ADediting_878728chr2_46713149_+ncRNA_intronic
ADediting_878729chr2_46715224_+ncRNA_intronic
ADediting_878730chr2_46715228_+ncRNA_intronic
ADediting_878731chr2_46715250_+ncRNA_intronic
ADediting_878732chr2_46715251_+ncRNA_intronic
ADediting_878733chr2_46715292_+ncRNA_intronic
ADediting_878734chr2_46716639_+ncRNA_intronic
ADediting_878735chr2_46728804_+ncRNA_intronic
ADediting_878736chr2_46733300_+ncRNA_intronic
ADediting_878737chr2_46733357_+ncRNA_intronic
ADediting_878738chr2_46733427_+ncRNA_intronic
ADediting_878739chr2_46733453_+ncRNA_intronic
ADediting_878740chr2_46733470_+ncRNA_intronic
ADediting_878741chr2_46733476_+ncRNA_intronic
ADediting_878742chr2_46733488_+ncRNA_intronic
ADediting_878743chr2_46733493_+ncRNA_intronic
ADediting_878744chr2_46733498_+ncRNA_intronic
ADediting_878745chr2_46757815_+ncRNA_intronic
ADediting_878746chr2_46763614_+ncRNA_intronic
ADediting_878747chr2_46763684_+ncRNA_intronic
ADediting_878748chr2_46763701_+ncRNA_intronic
ADediting_878749chr2_46763713_+ncRNA_intronic
ADediting_878750chr2_46763723_+ncRNA_intronic
ADediting_878751chr2_46763725_+ncRNA_intronic
ADediting_878752chr2_46763749_+ncRNA_intronic
ADediting_878753chr2_46763750_+ncRNA_intronic
ADediting_878754chr2_46763764_+ncRNA_intronic
ADediting_878755chr2_46763806_+ncRNA_intronic
ADediting_878756chr2_46763842_+ncRNA_intronic
ADediting_878757chr2_46763843_+ncRNA_intronic
ADediting_878758chr2_46763849_+ncRNA_intronic
ADediting_878759chr2_46763855_+ncRNA_intronic
ADediting_878760chr2_46763861_+ncRNA_intronic
ADediting_878761chr2_46765173_+ncRNA_intronic
ADediting_878762chr2_46765177_+ncRNA_intronic
ADediting_878763chr2_46765189_+ncRNA_intronic
ADediting_878764chr2_46765195_+ncRNA_intronic
ADediting_878765chr2_46765201_+ncRNA_intronic
ADediting_878766chr2_46765218_+ncRNA_intronic
ADediting_878767chr2_46765232_+ncRNA_intronic
ADediting_878768chr2_46765256_+ncRNA_intronic
ADediting_878769chr2_46765273_+ncRNA_intronic
ADediting_878770chr2_46765274_+ncRNA_intronic
ADediting_878771chr2_46765281_+ncRNA_intronic
ADediting_878772chr2_46765301_+ncRNA_intronic
ADediting_878773chr2_46765327_+ncRNA_intronic
ADediting_878774chr2_46765337_+ncRNA_intronic
ADediting_878775chr2_46767259_+ncRNA_intronic
ADediting_878776chr2_46767265_+ncRNA_intronic
ADediting_878777chr2_46767284_+ncRNA_intronic
ADediting_878778chr2_46767285_+ncRNA_intronic
ADediting_878779chr2_46767288_+ncRNA_intronic
ADediting_878780chr2_46767289_+ncRNA_intronic
ADediting_878781chr2_46767302_+ncRNA_intronic
ADediting_878782chr2_46767314_+ncRNA_intronic
ADediting_878783chr2_46767326_+ncRNA_intronic
ADediting_878784chr2_46767350_+ncRNA_intronic
ADediting_878785chr2_46767351_+ncRNA_intronic
ADediting_878786chr2_46767359_+ncRNA_intronic
ADediting_878787chr2_46767365_+ncRNA_intronic
ADediting_878788chr2_46767368_+ncRNA_intronic
ADediting_878789chr2_46767371_+ncRNA_intronic
ADediting_878790chr2_46767372_+ncRNA_intronic
ADediting_878791chr2_46767394_+ncRNA_intronic
ADediting_878792chr2_46767407_+ncRNA_intronic
ADediting_878793chr2_46767419_+ncRNA_intronic
ADediting_878794chr2_46767432_+ncRNA_intronic
ADediting_878795chr2_46767446_+ncRNA_intronic
ADediting_878796chr2_46767447_+ncRNA_intronic
ADediting_878797chr2_46767459_+ncRNA_intronic
ADediting_878798chr2_46769259_+ncRNA_intronic
ADediting_878799chr2_46769269_+ncRNA_intronic
ADediting_878800chr2_46769271_+ncRNA_intronic
ADediting_878801chr2_46769278_+ncRNA_intronic
ADediting_878802chr2_46769331_+ncRNA_intronic
ADediting_878803chr2_46769332_+ncRNA_intronic
ADediting_878804chr2_46769368_+ncRNA_intronic
ADediting_878805chr2_46769383_+ncRNA_intronic
ADediting_878806chr2_46769386_+ncRNA_intronic
ADediting_878807chr2_46769412_+ncRNA_intronic
ADediting_878808chr2_46769413_+ncRNA_intronic
ADediting_878809chr2_46769418_+ncRNA_intronic
ADediting_878810chr2_46769422_+ncRNA_intronic
ADediting_878811chr2_46769435_+ncRNA_intronic
ADediting_878812chr2_46769439_+ncRNA_intronic
ADediting_878813chr2_46769445_+ncRNA_intronic
ADediting_878814chr2_46769452_+ncRNA_intronic
ADediting_878815chr2_46769453_+ncRNA_intronic
ADediting_878816chr2_46769454_+ncRNA_intronic
ADediting_878817chr2_46769461_+ncRNA_intronic
ADediting_878818chr2_46769465_+ncRNA_intronic
ADediting_878819chr2_46769478_+ncRNA_intronic
ADediting_878820chr2_46769482_+ncRNA_intronic
ADediting_878821chr2_46769483_+ncRNA_intronic
ADediting_878822chr2_46769498_+ncRNA_intronic
ADediting_878823chr2_46772090_+ncRNA_intronic
ADediting_878824chr2_46772577_+ncRNA_intronic
ADediting_878825chr2_46772589_+ncRNA_intronic
ADediting_878826chr2_46772594_+ncRNA_intronic
ADediting_878827chr2_46772636_+ncRNA_intronic
ADediting_878828chr2_46772657_+ncRNA_intronic
ADediting_878829chr2_46772659_+ncRNA_intronic
ADediting_878830chr2_46773393_+ncRNA_intronic
ADediting_878831chr2_46774398_+ncRNA_intronic
ADediting_878832chr2_46774406_+ncRNA_intronic
ADediting_878833chr2_46774424_+ncRNA_intronic
ADediting_878834chr2_46774558_+ncRNA_intronic
ADediting_878835chr2_46775326_+ncRNA_intronic
ADediting_878836chr2_46775330_+ncRNA_intronic
ADediting_878837chr2_46775339_+ncRNA_intronic
ADediting_878838chr2_46775349_+ncRNA_intronic
ADediting_878839chr2_46775358_+ncRNA_intronic
ADediting_878840chr2_46775364_+ncRNA_intronic
ADediting_878841chr2_46775366_+ncRNA_intronic
ADediting_878842chr2_46775380_+ncRNA_intronic
ADediting_878843chr2_46775395_+ncRNA_intronic
ADediting_878844chr2_46775397_+ncRNA_intronic
ADediting_878845chr2_46775413_+ncRNA_intronic
ADediting_878846chr2_46775436_+ncRNA_intronic
ADediting_878847chr2_46775449_+ncRNA_intronic
ADediting_878848chr2_46777350_+ncRNA_intronic
ADediting_878849chr2_46777376_+ncRNA_intronic
ADediting_878850chr2_46777390_+ncRNA_intronic
ADediting_878851chr2_46777403_+ncRNA_intronic
ADediting_878852chr2_46777409_+ncRNA_intronic
ADediting_878853chr2_46777821_+ncRNA_intronic
ADediting_878854chr2_46777921_+ncRNA_intronic
ADediting_878855chr2_46777922_+ncRNA_intronic
ADediting_878856chr2_46777952_+ncRNA_intronic
ADediting_878857chr2_46777962_+ncRNA_intronic
ADediting_878858chr2_46777963_+ncRNA_intronic
ADediting_878859chr2_46778008_+ncRNA_intronic
ADediting_878860chr2_46787975_+ncRNA_intronic
ADediting_878861chr2_46788091_+ncRNA_intronic
ADediting_878862chr2_46788110_+ncRNA_intronic
ADediting_878863chr2_46788115_+ncRNA_intronic
ADediting_878864chr2_46788131_+ncRNA_intronic
ADediting_878865chr2_46788134_+ncRNA_intronic
ADediting_878866chr2_46788135_+ncRNA_intronic
ADediting_878867chr2_46788206_+ncRNA_intronic
ADediting_878868chr2_46788260_+ncRNA_intronic
ADediting_878869chr2_46788435_+ncRNA_intronic
ADediting_878870chr2_46807920_+ncRNA_intronic
ADediting_878871chr2_46807936_+ncRNA_intronic
ADediting_1563571chr2_46763781_+ncRNA_intronic
ADediting_1563572chr2_46774528_+ncRNA_intronic
ADediting_1563573chr2_46774554_+ncRNA_intronic
ADediting_1563574chr2_46775396_+ncRNA_intronic
ADediting_1637759chr2_46713123_+ncRNA_intronic
ADediting_1637760chr2_46713130_+ncRNA_intronic
ADediting_1637761chr2_46713136_+ncRNA_intronic
ADediting_1637762chr2_46713172_+ncRNA_intronic
ADediting_1637763chr2_46713174_+ncRNA_intronic
ADediting_1637764chr2_46713209_+ncRNA_intronic
ADediting_1637765chr2_46713245_+ncRNA_intronic
ADediting_1637766chr2_46713249_+ncRNA_intronic
ADediting_1637767chr2_46715159_+ncRNA_intronic
ADediting_1637768chr2_46715232_+ncRNA_intronic
ADediting_1637769chr2_46715267_+ncRNA_intronic
ADediting_1637770chr2_46715273_+ncRNA_intronic
ADediting_1637771chr2_46716607_+ncRNA_intronic
ADediting_1637772chr2_46728657_+ncRNA_intronic
ADediting_1637773chr2_46728685_+ncRNA_intronic
ADediting_1637774chr2_46730441_+ncRNA_intronic

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_878726chr2_46709016_+SINEAluName=AluSc
ADediting_878727chr2_46710635_+LINEL1Name=L1M4
ADediting_878728chr2_46713149_+SINEAluName=AluJb
ADediting_878729chr2_46715224_+SINEAluName=AluJb
ADediting_878730chr2_46715228_+SINEAluName=AluJb
ADediting_878731chr2_46715250_+SINEAluName=AluJb
ADediting_878732chr2_46715251_+SINEAluName=AluJb
ADediting_878733chr2_46715292_+SINEAluName=AluJb
ADediting_878734chr2_46716639_+SINEAluName=AluJo
ADediting_878735chr2_46728804_+SINEAluName=AluSz
ADediting_878736chr2_46733300_+SINEAluName=AluSx
ADediting_878737chr2_46733357_+SINEAluName=AluSx
ADediting_878738chr2_46733427_+SINEAluName=AluJb
ADediting_878739chr2_46733453_+SINEAluName=AluJb
ADediting_878740chr2_46733470_+SINEAluName=AluJb
ADediting_878741chr2_46733476_+SINEAluName=AluJb
ADediting_878742chr2_46733488_+SINEAluName=AluJb
ADediting_878743chr2_46733493_+SINEAluName=AluJb
ADediting_878744chr2_46733498_+SINEAluName=AluJb
ADediting_878745chr2_46757815_+SINEAluName=AluSx
ADediting_878746chr2_46763614_+SINEAluName=AluSq2
ADediting_878747chr2_46763684_+SINEAluName=AluSq2
ADediting_878748chr2_46763701_+SINEAluName=AluSq2
ADediting_878749chr2_46763713_+SINEAluName=AluSq2
ADediting_878750chr2_46763723_+SINEAluName=AluSq2
ADediting_878751chr2_46763725_+SINEAluName=AluSq2
ADediting_878752chr2_46763749_+SINEAluName=AluSq2
ADediting_878753chr2_46763750_+SINEAluName=AluSq2
ADediting_878754chr2_46763764_+SINEAluName=AluSq2
ADediting_878755chr2_46763806_+SINEAluName=AluSq2
ADediting_878756chr2_46763842_+SINEAluName=AluSq2
ADediting_878757chr2_46763843_+SINEAluName=AluSq2
ADediting_878758chr2_46763849_+SINEAluName=AluSq2
ADediting_878759chr2_46763855_+SINEAluName=AluSq2
ADediting_878760chr2_46763861_+SINEAluName=AluSq2
ADediting_878761chr2_46765173_+SINEAluName=AluJo
ADediting_878762chr2_46765177_+SINEAluName=AluJo
ADediting_878763chr2_46765189_+SINEAluName=AluJo
ADediting_878764chr2_46765195_+SINEAluName=AluJo
ADediting_878765chr2_46765201_+SINEAluName=AluJo
ADediting_878766chr2_46765218_+SINEAluName=AluJo
ADediting_878767chr2_46765232_+SINEAluName=AluJo
ADediting_878768chr2_46765256_+SINEAluName=AluJo
ADediting_878769chr2_46765273_+SINEAluName=AluJo
ADediting_878770chr2_46765274_+SINEAluName=AluJo
ADediting_878771chr2_46765281_+SINEAluName=AluJo
ADediting_878772chr2_46765301_+SINEAluName=AluJo
ADediting_878773chr2_46765327_+SINEAluName=AluJo
ADediting_878774chr2_46765337_+SINEAluName=AluJo
ADediting_878775chr2_46767259_+SINEAluName=AluSx
ADediting_878776chr2_46767265_+SINEAluName=AluSx
ADediting_878777chr2_46767284_+SINEAluName=AluSx
ADediting_878778chr2_46767285_+SINEAluName=AluSx
ADediting_878779chr2_46767288_+SINEAluName=AluSx
ADediting_878780chr2_46767289_+SINEAluName=AluSx
ADediting_878781chr2_46767302_+SINEAluName=AluSx
ADediting_878782chr2_46767314_+SINEAluName=AluSx
ADediting_878783chr2_46767326_+SINEAluName=AluSx
ADediting_878784chr2_46767350_+SINEAluName=AluSx
ADediting_878785chr2_46767351_+SINEAluName=AluSx
ADediting_878786chr2_46767359_+SINEAluName=AluSx
ADediting_878787chr2_46767365_+SINEAluName=AluSx
ADediting_878788chr2_46767368_+SINEAluName=AluSx
ADediting_878789chr2_46767371_+SINEAluName=AluSx
ADediting_878790chr2_46767372_+SINEAluName=AluSx
ADediting_878791chr2_46767394_+SINEAluName=AluSx
ADediting_878792chr2_46767407_+SINEAluName=AluSx
ADediting_878793chr2_46767419_+SINEAluName=AluSx
ADediting_878794chr2_46767432_+SINEAluName=AluSx
ADediting_878795chr2_46767446_+SINEAluName=AluSx
ADediting_878796chr2_46767447_+SINEAluName=AluSx
ADediting_878797chr2_46767459_+SINEAluName=AluSx
ADediting_878798chr2_46769259_+SINEAluName=AluSx1
ADediting_878799chr2_46769269_+SINEAluName=AluSx1
ADediting_878800chr2_46769271_+SINEAluName=AluSx1
ADediting_878801chr2_46769278_+SINEAluName=AluSx1
ADediting_878802chr2_46769331_+SINEAluName=AluSx1
ADediting_878803chr2_46769332_+SINEAluName=AluSx1
ADediting_878804chr2_46769368_+SINEAluName=AluSx1
ADediting_878805chr2_46769383_+SINEAluName=AluSx1
ADediting_878806chr2_46769386_+SINEAluName=AluSx1
ADediting_878807chr2_46769412_+SINEAluName=AluSx1
ADediting_878808chr2_46769413_+SINEAluName=AluSx1
ADediting_878809chr2_46769418_+SINEAluName=AluSx1
ADediting_878810chr2_46769422_+SINEAluName=AluSx1
ADediting_878811chr2_46769435_+SINEAluName=AluSx1
ADediting_878812chr2_46769439_+SINEAluName=AluSx1
ADediting_878813chr2_46769445_+SINEAluName=AluSx1
ADediting_878814chr2_46769452_+SINEAluName=AluSx1
ADediting_878815chr2_46769453_+SINEAluName=AluSx1
ADediting_878816chr2_46769454_+SINEAluName=AluSx1
ADediting_878817chr2_46769461_+SINEAluName=AluSx1
ADediting_878818chr2_46769465_+SINEAluName=AluSx1
ADediting_878819chr2_46769478_+SINEAluName=AluSx1
ADediting_878820chr2_46769482_+SINEAluName=AluSx1
ADediting_878821chr2_46769483_+SINEAluName=AluSx1
ADediting_878822chr2_46769498_+SINEAluName=AluSx1
ADediting_878823chr2_46772090_+SINEAluName=AluSz
ADediting_878830chr2_46773393_+SINEAluName=AluSx
ADediting_878831chr2_46774398_+SINEAluName=AluJb
ADediting_878832chr2_46774406_+SINEAluName=AluJb
ADediting_878833chr2_46774424_+SINEAluName=AluJb
ADediting_878834chr2_46774558_+SINEAluName=AluJb
ADediting_878835chr2_46775326_+SINEAluName=AluJr
ADediting_878836chr2_46775330_+SINEAluName=AluJr
ADediting_878837chr2_46775339_+SINEAluName=AluJr
ADediting_878838chr2_46775349_+SINEAluName=AluJr
ADediting_878839chr2_46775358_+SINEAluName=AluJr
ADediting_878840chr2_46775364_+SINEAluName=AluJr
ADediting_878841chr2_46775366_+SINEAluName=AluJr
ADediting_878842chr2_46775380_+SINEAluName=AluJr
ADediting_878843chr2_46775395_+SINEAluName=AluJr
ADediting_878844chr2_46775397_+SINEAluName=AluJr
ADediting_878845chr2_46775413_+SINEAluName=AluJr
ADediting_878846chr2_46775436_+SINEAluName=AluJr
ADediting_878847chr2_46775449_+SINEAluName=AluJr
ADediting_878848chr2_46777350_+SINEAluName=AluSx
ADediting_878849chr2_46777376_+SINEAluName=AluSx
ADediting_878850chr2_46777390_+SINEAluName=AluSx
ADediting_878851chr2_46777403_+SINEAluName=AluSx
ADediting_878852chr2_46777409_+SINEAluName=AluSx
ADediting_878853chr2_46777821_+SINEAluName=AluSx
ADediting_878854chr2_46777921_+SINEAluName=AluSx
ADediting_878855chr2_46777922_+SINEAluName=AluSx
ADediting_878856chr2_46777952_+SINEAluName=AluSx
ADediting_878857chr2_46777962_+SINEAluName=AluSx
ADediting_878858chr2_46777963_+SINEAluName=AluSx
ADediting_878859chr2_46778008_+SINEAluName=AluSx
ADediting_878860chr2_46787975_+SINEAluName=AluJb
ADediting_878861chr2_46788091_+SINEAluName=AluJb
ADediting_878862chr2_46788110_+SINEAluName=AluJb
ADediting_878863chr2_46788115_+SINEAluName=AluJb
ADediting_878864chr2_46788131_+SINEAluName=AluJb
ADediting_878865chr2_46788134_+SINEAluName=AluJb
ADediting_878866chr2_46788135_+SINEAluName=AluJb
ADediting_878867chr2_46788206_+SINEAluName=AluJb
ADediting_878868chr2_46788260_+SINEAluName=AluSx1
ADediting_878869chr2_46788435_+SINEAluName=AluSx1
ADediting_878870chr2_46807920_+SINEAluName=AluJb
ADediting_878871chr2_46807936_+SINEAluName=AluJb
ADediting_1563571chr2_46763781_+SINEAluName=AluSq2
ADediting_1563572chr2_46774528_+SINEAluName=AluJb
ADediting_1563573chr2_46774554_+SINEAluName=AluJb
ADediting_1563574chr2_46775396_+SINEAluName=AluJr
ADediting_1637759chr2_46713123_+SINEAluName=AluJb
ADediting_1637760chr2_46713130_+SINEAluName=AluJb
ADediting_1637761chr2_46713136_+SINEAluName=AluJb
ADediting_1637762chr2_46713172_+SINEAluName=AluJb
ADediting_1637763chr2_46713174_+SINEAluName=AluJb
ADediting_1637764chr2_46713209_+SINEAluName=AluJb
ADediting_1637765chr2_46713245_+SINEAluName=AluJb
ADediting_1637766chr2_46713249_+SINEAluName=AluJb
ADediting_1637767chr2_46715159_+SINEAluName=AluJb
ADediting_1637768chr2_46715232_+SINEAluName=AluJb
ADediting_1637769chr2_46715267_+SINEAluName=AluJb
ADediting_1637770chr2_46715273_+SINEAluName=AluJb
ADediting_1637771chr2_46716607_+SINEAluName=AluJo
ADediting_1637772chr2_46728657_+SINEAluName=AluSz
ADediting_1637773chr2_46728685_+SINEAluName=AluSz
ADediting_1637774chr2_46730441_+SINEAluName=AluSx1

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RNA A-to-I editing events in the alternative splicing sites for LINC01118

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for LINC01118

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
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check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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ADeditome IDChrPositoingSkipped exonENSGENSTs

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Protein coding region RNA A-to-I editings for LINC01118

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for LINC01118


check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1097295chr3_85385762_+ENSG00000222005.9ENST00000479311.1LINC01118-203hsa-miR-5688chr246818417468184237mer-m84681840146818424152-14.72
ADediting_1337757chr7_5495852_-ENSG00000222005.9ENST00000650611.1LINC01118-204hsa-miR-589-3pchr246797643467976497mer-m84679749146797650145-16.62
ADediting_1337757chr7_5495852_-ENSG00000222005.9ENST00000650611.1LINC01118-204hsa-miR-589-3pchr246816657468166637mer-m84681664146816664140-15.59
ADediting_286380chr11_79422188_-ENSG00000222005.9ENST00000409518.1LINC01118-201hsa-miR-5579-3pchr246822545468225517mer-m84682253146822552150-14.26
ADediting_286380chr11_79422188_-ENSG00000222005.9ENST00000409912.5LINC01118-202hsa-miR-5579-3pchr246822545468225517mer-m84682253146822552150-14.26
ADediting_286380chr11_79422188_-ENSG00000222005.9ENST00000650611.1LINC01118-204hsa-miR-5579-3pchr246822545468225517mer-m84682253146822552150-14.26
ADediting_291761chr11_93733708_-ENSG00000222005.9ENST00000409518.1LINC01118-201hsa-miR-1304-3pchr246822146468221527mer-m84682213646822153146-18.29
ADediting_291761chr11_93733708_-ENSG00000222005.9ENST00000409912.5LINC01118-202hsa-miR-1304-3pchr246822146468221527mer-m84682213646822153146-18.29
ADediting_291761chr11_93733708_-ENSG00000222005.9ENST00000650611.1LINC01118-204hsa-miR-1304-3pchr246822146468221527mer-m84682213646822153146-18.29
ADediting_843620chr2_207754818_+ENSG00000222005.9ENST00000650611.1LINC01118-204hsa-miR-4775chr246822652468226587mer-m84682263846822659150-6.81

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_107020chr1_37500952_-ENSG00000222005.9ENST00000409518.1LINC01118-201hsa-miR-5581-3pchr246822121468221277mer-m84682210746822128140-12.36
ADediting_107020chr1_37500952_-ENSG00000222005.9ENST00000409912.5LINC01118-202hsa-miR-5581-3pchr246822121468221277mer-m84682210746822128140-12.36
ADediting_107020chr1_37500952_-ENSG00000222005.9ENST00000650611.1LINC01118-204hsa-miR-5581-3pchr246822121468221277mer-m84682210746822128140-12.36
ADediting_496066chr15_66496985_-ENSG00000222005.9ENST00000479311.1LINC01118-203hsa-miR-4512chr246818657468186637mer-m84681864346818664142-21.28
ADediting_843620chr2_207754818_+ENSG00000222005.9ENST00000479311.1LINC01118-203hsa-miR-4775chr246819291468192988mer-1a4681927746819298154-5.64

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for LINC01118

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for LINC01118

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
CERADediting_878758chr2_46763849_+2.43912883080685e-050.337261189058157.34395864208136e-110.4999407923732970.002167539761840360.248498730583875
TCXADediting_878761chr2_46765173_+0.001745039248066040.2535361598072287.18579654340479e-050.318342016223260.835290517536524-0.0171186541388669
CERADediting_878763chr2_46765189_+0.004254831400698450.2321502142405334.9385413050037e-060.36315113858430.01066919402349820.207935802593031
CERADediting_878770chr2_46765274_+0.0002865764707374950.2921123205656088.2898240220072e-060.3550016226232350.002485461546367080.245266544526181
CERADediting_878773chr2_46765327_+0.0003420257694630590.2885717072514568.61723355901662e-080.4202327434815360.01244158598509680.203632929907567
CERADediting_878774chr2_46765337_+0.0009269644106732280.2676945701689255.56110171764919e-060.3613027736691140.05315718527712650.158208871485038
CERADediting_878776chr2_46767265_+0.009236694251364970.2119010135515465.13937660124835e-060.3625318380715010.6153089036597470.0413581777574896
DLPFCADediting_878777chr2_46767284_+0.140661206451917-0.08387102192247040.00658661392640813-0.1540185795265162.48666099787518e-090.330414380661374
CERADediting_878777chr2_46767284_+0.03000317966310780.1772609764383737.74320790578511e-050.31698637582560.4069340660059130.0682038108858984
DLPFCADediting_878778chr2_46767285_+0.152348363055712-0.08148550414027130.00754769272011682-0.1514755073416953.25627630589306e-090.328102209549102
DLPFCADediting_878780chr2_46767289_+0.196084001469055-0.0736232255355410.021185426050629-0.130861373763764.64558252467079e-090.32502538437504
CERADediting_878780chr2_46767289_+0.03727543139205490.1702353348401484.56927526603982e-050.3264221021872940.6938326769029390.0324047749650973
DLPFCADediting_878781chr2_46767302_+0.0876578051716893-0.09716419230873230.00159813928305084-0.1785415037266922.85166971241006e-100.348320622863449
DLPFCADediting_878791chr2_46767394_+0.565645425599333-0.03275162427867520.0264457269066632-0.1260708834143271.43067153360282e-100.353793201100877
DLPFCADediting_878792chr2_46767407_+0.2839635145560450.06104456460246420.274980511593222-0.06219359417746442.33319219023343e-230.524999659768324
DLPFCADediting_878794chr2_46767432_+0.6333137302994920.02720050861112750.325579774371682-0.05601628209636292.76787951810046e-090.329497970419801
DLPFCADediting_878803chr2_46769332_+0.547867496387012-0.03426054274092080.0403653405912467-0.1165055207379349.07207675384815e-160.435356716684907
DLPFCADediting_878868chr2_46788260_+0.588110352084405-0.03087687247178590.425404596860542-0.04543125052225053.33773928627251e-080.30728960494714
DLPFCADediting_878869chr2_46788435_+0.7719983535716730.0165229986076730.144807588964058-0.08300797574629113.98037081972324e-170.453452898463042

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFC0.004928636447698480.1593140612586020.02068679265798270.1313673551461283.71495107833576e-150.426830028178067
PCC0.5964122699811760.03855695998419530.629242393742562-0.0351536672155244.49741222837317e-070.35549397298855
TCX0.0005948086648822720.2771866872268396.2564901444666e-050.3208379372118770.869389632662970.0135386076967601
FP7.93990388439943e-070.3600802610360685.6888698721642e-070.3644697498611330.02488200965826550.168123017503366
IFG0.1905965399195920.2707028928277540.366574961810560.1886092929447060.03450282028013710.424338149017599
PG2.07333934147516e-080.3967166961890446.07602731327225e-090.4102030377732450.2250742780020630.0893765065652974
STG0.09202666259930710.185008582511910.6885177530862150.04438166516632990.0003329075116700190.382258193619766

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Relation with AD stages for LINC01118

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.
CERADediting_878758chr2_46763849_+0.0004026464173638010.334506545803442
CERADediting_878763chr2_46765189_+0.0002524405060646510.345284343406988
CERADediting_878773chr2_46765327_+1.60630475015017e-050.402094440119393
TCXADediting_878761chr2_46765173_+0.001151361560910130.311530390906618

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.

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RelatedDrugs for LINC01118

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for LINC01118

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource