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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for CA13 |
 Gene summary |
| Gene information | Gene symbol | CA13 | Gene ID | 377677 |
| Gene name | carbonic anhydrase 13 | |
| Synonyms | CAXIII | |
| Cytomap | 8q21.2 | |
| Type of gene | protein-coding | |
| Description | carbonic anhydrase 13CA-XIIIcarbonate dehydratase XIIIcarbonic anhydrase XIII | |
| Modification date | 20200313 | |
| UniProtAcc | Q8N1Q1, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for CA13 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_1423459(85257501, +), ADediting_1423460(85257530, +), ADediting_1423461(85258667, +), ADediting_1423462(85258800, +), ADediting_1423463(85258838, +), ADediting_1423464(85258840, +), ADediting_1423465(85258862, +), ADediting_1423466(85271836, +), ADediting_1423467(85271853, +), ADediting_1423468(85271854, +), ADediting_1423469(85271873, +), ADediting_1423470(85271891, +), ADediting_1423471(85271892, +), ADediting_1423472(85271893, +), ADediting_1423473(85271898, +), ADediting_1423474(85271971, +), ADediting_1423475(85271975, +), ADediting_1423476(85271981, +), ADediting_1423477(85272349, +), ADediting_1423478(85272373, +), ADediting_1423479(85272490, +), ADediting_1423480(85272491, +), ADediting_1423481(85272508, +), ADediting_1423482(85272935, +), ADediting_1423483(85273023, +), ADediting_1423484(85273038, +), ADediting_1423485(85273052, +), ADediting_1423486(85273053, +), ADediting_1423487(85273092, +), ADediting_1423488(85273475, +), ADediting_1423489(85273506, +), ADediting_1423490(85273507, +), ADediting_1423491(85273513, +), ADediting_1423492(85273514, +), ADediting_1423493(85273528, +), ADediting_1423494(85273534, +), ADediting_1423495(85273540, +), ADediting_1423496(85273541, +), ADediting_1423497(85273548, +), ADediting_1423498(85273584, +), ADediting_1423499(85273646, +), ADediting_1423500(85273668, +), ADediting_1423501(85273670, +), ADediting_1423502(85273673, +), ADediting_1423503(85273709, +), ADediting_1423504(85274015, +), ADediting_1423505(85278059, +), ADediting_1423506(85280071, +), ADediting_1423507(85280133, +), ADediting_1423508(85280159, +), ADediting_1423509(85281530, +), ADediting_1423510(85281536, +), ADediting_1423511(85281544, +), ADediting_1423512(85281552, +), ADediting_1423513(85281574, +), ADediting_1423514(85281576, +), ADediting_1423515(85281592, +), ADediting_1423516(85281599, +), ADediting_1423517(85281612, +), ADediting_1423518(85281613, +), ADediting_1423519(85281625, +), ADediting_1423520(85281652, +), ADediting_1423521(85281704, +), ADediting_1423522(85281707, +), ADediting_1423523(85281738, +), ADediting_1423524(85282956, +), ADediting_1423525(85282978, +), ADediting_1423526(85283005, +), ADediting_1423527(85283024, +), ADediting_1423528(85283025, +), ADediting_1423529(85283026, +), ADediting_1423530(85283064, +), ADediting_1423531(85283080, +), ADediting_1423532(85283105, +), ADediting_1423533(85283108, +), ADediting_1423534(85283144, +), ADediting_1591588(85281556, +), ADediting_1591589(85281630, +), ADediting_1591590(85281642, +), ADediting_1591591(85281700, +), ADediting_1591592(85283077, +), ADediting_1670919(85273001, +), ADediting_1670920(85273007, +), |
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RNA editing positional annotations for CA13 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1423459 | chr8_85257501_+ | intronic |
| ADediting_1423460 | chr8_85257530_+ | intronic |
| ADediting_1423461 | chr8_85258667_+ | intronic |
| ADediting_1423462 | chr8_85258800_+ | intronic |
| ADediting_1423463 | chr8_85258838_+ | intronic |
| ADediting_1423464 | chr8_85258840_+ | intronic |
| ADediting_1423465 | chr8_85258862_+ | intronic |
| ADediting_1423466 | chr8_85271836_+ | intronic |
| ADediting_1423467 | chr8_85271853_+ | intronic |
| ADediting_1423468 | chr8_85271854_+ | intronic |
| ADediting_1423469 | chr8_85271873_+ | intronic |
| ADediting_1423470 | chr8_85271891_+ | intronic |
| ADediting_1423471 | chr8_85271892_+ | intronic |
| ADediting_1423472 | chr8_85271893_+ | intronic |
| ADediting_1423473 | chr8_85271898_+ | intronic |
| ADediting_1423474 | chr8_85271971_+ | intronic |
| ADediting_1423475 | chr8_85271975_+ | intronic |
| ADediting_1423476 | chr8_85271981_+ | intronic |
| ADediting_1423477 | chr8_85272349_+ | intronic |
| ADediting_1423478 | chr8_85272373_+ | intronic |
| ADediting_1423479 | chr8_85272490_+ | intronic |
| ADediting_1423480 | chr8_85272491_+ | intronic |
| ADediting_1423481 | chr8_85272508_+ | intronic |
| ADediting_1423482 | chr8_85272935_+ | intronic |
| ADediting_1423483 | chr8_85273023_+ | intronic |
| ADediting_1423484 | chr8_85273038_+ | intronic |
| ADediting_1423485 | chr8_85273052_+ | intronic |
| ADediting_1423486 | chr8_85273053_+ | intronic |
| ADediting_1423487 | chr8_85273092_+ | intronic |
| ADediting_1423488 | chr8_85273475_+ | intronic |
| ADediting_1423489 | chr8_85273506_+ | intronic |
| ADediting_1423490 | chr8_85273507_+ | intronic |
| ADediting_1423491 | chr8_85273513_+ | intronic |
| ADediting_1423492 | chr8_85273514_+ | intronic |
| ADediting_1423493 | chr8_85273528_+ | intronic |
| ADediting_1423494 | chr8_85273534_+ | intronic |
| ADediting_1423495 | chr8_85273540_+ | intronic |
| ADediting_1423496 | chr8_85273541_+ | intronic |
| ADediting_1423497 | chr8_85273548_+ | intronic |
| ADediting_1423498 | chr8_85273584_+ | intronic |
| ADediting_1423499 | chr8_85273646_+ | intronic |
| ADediting_1423500 | chr8_85273668_+ | intronic |
| ADediting_1423501 | chr8_85273670_+ | intronic |
| ADediting_1423502 | chr8_85273673_+ | intronic |
| ADediting_1423503 | chr8_85273709_+ | intronic |
| ADediting_1423504 | chr8_85274015_+ | intronic |
| ADediting_1423505 | chr8_85278059_+ | intronic |
| ADediting_1423506 | chr8_85280071_+ | intronic |
| ADediting_1423507 | chr8_85280133_+ | intronic |
| ADediting_1423508 | chr8_85280159_+ | intronic |
| ADediting_1423509 | chr8_85281530_+ | UTR3 |
| ADediting_1423510 | chr8_85281536_+ | UTR3 |
| ADediting_1423511 | chr8_85281544_+ | UTR3 |
| ADediting_1423512 | chr8_85281552_+ | UTR3 |
| ADediting_1423513 | chr8_85281574_+ | UTR3 |
| ADediting_1423514 | chr8_85281576_+ | UTR3 |
| ADediting_1423515 | chr8_85281592_+ | UTR3 |
| ADediting_1423516 | chr8_85281599_+ | UTR3 |
| ADediting_1423517 | chr8_85281612_+ | UTR3 |
| ADediting_1423518 | chr8_85281613_+ | UTR3 |
| ADediting_1423519 | chr8_85281625_+ | UTR3 |
| ADediting_1423520 | chr8_85281652_+ | UTR3 |
| ADediting_1423521 | chr8_85281704_+ | UTR3 |
| ADediting_1423522 | chr8_85281707_+ | UTR3 |
| ADediting_1423523 | chr8_85281738_+ | UTR3 |
| ADediting_1423524 | chr8_85282956_+ | UTR3 |
| ADediting_1423525 | chr8_85282978_+ | UTR3 |
| ADediting_1423526 | chr8_85283005_+ | UTR3 |
| ADediting_1423527 | chr8_85283024_+ | UTR3 |
| ADediting_1423528 | chr8_85283025_+ | UTR3 |
| ADediting_1423529 | chr8_85283026_+ | UTR3 |
| ADediting_1423530 | chr8_85283064_+ | UTR3 |
| ADediting_1423531 | chr8_85283080_+ | UTR3 |
| ADediting_1423532 | chr8_85283105_+ | UTR3 |
| ADediting_1423533 | chr8_85283108_+ | UTR3 |
| ADediting_1423534 | chr8_85283144_+ | UTR3 |
| ADediting_1591588 | chr8_85281556_+ | UTR3 |
| ADediting_1591589 | chr8_85281630_+ | UTR3 |
| ADediting_1591590 | chr8_85281642_+ | UTR3 |
| ADediting_1591591 | chr8_85281700_+ | UTR3 |
| ADediting_1591592 | chr8_85283077_+ | UTR3 |
| ADediting_1670919 | chr8_85273001_+ | intronic |
| ADediting_1670920 | chr8_85273007_+ | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1423459 | chr8_85257501_+ | SINE | Alu | Name=AluJb |
| ADediting_1423460 | chr8_85257530_+ | SINE | Alu | Name=AluJb |
| ADediting_1423461 | chr8_85258667_+ | SINE | Alu | Name=AluJr |
| ADediting_1423462 | chr8_85258800_+ | SINE | Alu | Name=AluJr |
| ADediting_1423463 | chr8_85258838_+ | SINE | Alu | Name=AluJr |
| ADediting_1423464 | chr8_85258840_+ | SINE | Alu | Name=AluJr |
| ADediting_1423465 | chr8_85258862_+ | SINE | Alu | Name=AluJr |
| ADediting_1423466 | chr8_85271836_+ | SINE | Alu | Name=AluSx |
| ADediting_1423467 | chr8_85271853_+ | SINE | Alu | Name=AluSx |
| ADediting_1423468 | chr8_85271854_+ | SINE | Alu | Name=AluSx |
| ADediting_1423469 | chr8_85271873_+ | SINE | Alu | Name=AluSx |
| ADediting_1423470 | chr8_85271891_+ | SINE | Alu | Name=AluSx |
| ADediting_1423471 | chr8_85271892_+ | SINE | Alu | Name=AluSx |
| ADediting_1423472 | chr8_85271893_+ | SINE | Alu | Name=AluSx |
| ADediting_1423473 | chr8_85271898_+ | SINE | Alu | Name=AluSx |
| ADediting_1423474 | chr8_85271971_+ | SINE | Alu | Name=AluSx |
| ADediting_1423475 | chr8_85271975_+ | SINE | Alu | Name=AluSx |
| ADediting_1423476 | chr8_85271981_+ | SINE | Alu | Name=AluSx |
| ADediting_1423477 | chr8_85272349_+ | SINE | Alu | Name=AluSz |
| ADediting_1423478 | chr8_85272373_+ | SINE | Alu | Name=AluSz |
| ADediting_1423479 | chr8_85272490_+ | SINE | Alu | Name=AluSz |
| ADediting_1423480 | chr8_85272491_+ | SINE | Alu | Name=AluSz |
| ADediting_1423481 | chr8_85272508_+ | SINE | Alu | Name=AluSz |
| ADediting_1423482 | chr8_85272935_+ | SINE | Alu | Name=AluSz |
| ADediting_1423483 | chr8_85273023_+ | SINE | Alu | Name=AluSz |
| ADediting_1423484 | chr8_85273038_+ | SINE | Alu | Name=AluSz |
| ADediting_1423485 | chr8_85273052_+ | SINE | Alu | Name=AluSz |
| ADediting_1423486 | chr8_85273053_+ | SINE | Alu | Name=AluSz |
| ADediting_1423487 | chr8_85273092_+ | SINE | Alu | Name=AluSz |
| ADediting_1423488 | chr8_85273475_+ | LTR | ERV1 | Name=MER48 |
| ADediting_1423489 | chr8_85273506_+ | LTR | ERV1 | Name=MER48 |
| ADediting_1423490 | chr8_85273507_+ | LTR | ERV1 | Name=MER48 |
| ADediting_1423491 | chr8_85273513_+ | LTR | ERV1 | Name=MER48 |
| ADediting_1423492 | chr8_85273514_+ | LTR | ERV1 | Name=MER48 |
| ADediting_1423493 | chr8_85273528_+ | LTR | ERV1 | Name=MER48 |
| ADediting_1423494 | chr8_85273534_+ | LTR | ERV1 | Name=MER48 |
| ADediting_1423495 | chr8_85273540_+ | LTR | ERV1 | Name=MER48 |
| ADediting_1423496 | chr8_85273541_+ | LTR | ERV1 | Name=MER48 |
| ADediting_1423497 | chr8_85273548_+ | LTR | ERV1 | Name=MER48 |
| ADediting_1423498 | chr8_85273584_+ | LTR | ERV1 | Name=MER48 |
| ADediting_1423499 | chr8_85273646_+ | LTR | ERV1 | Name=MER48 |
| ADediting_1423500 | chr8_85273668_+ | LTR | ERV1 | Name=MER48 |
| ADediting_1423501 | chr8_85273670_+ | LTR | ERV1 | Name=MER48 |
| ADediting_1423502 | chr8_85273673_+ | LTR | ERV1 | Name=MER48 |
| ADediting_1423503 | chr8_85273709_+ | LTR | ERV1 | Name=MER48 |
| ADediting_1423504 | chr8_85274015_+ | LTR | ERV1 | Name=MER48 |
| ADediting_1423505 | chr8_85278059_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1423506 | chr8_85280071_+ | SINE | Alu | Name=AluSc |
| ADediting_1423507 | chr8_85280133_+ | SINE | Alu | Name=AluSc |
| ADediting_1423508 | chr8_85280159_+ | SINE | Alu | Name=AluSc |
| ADediting_1423509 | chr8_85281530_+ | SINE | Alu | Name=AluJr |
| ADediting_1423510 | chr8_85281536_+ | SINE | Alu | Name=AluJr |
| ADediting_1423511 | chr8_85281544_+ | SINE | Alu | Name=AluJr |
| ADediting_1423512 | chr8_85281552_+ | SINE | Alu | Name=AluJr |
| ADediting_1423513 | chr8_85281574_+ | SINE | Alu | Name=AluJr |
| ADediting_1423514 | chr8_85281576_+ | SINE | Alu | Name=AluJr |
| ADediting_1423515 | chr8_85281592_+ | SINE | Alu | Name=AluJr |
| ADediting_1423516 | chr8_85281599_+ | SINE | Alu | Name=AluJr |
| ADediting_1423517 | chr8_85281612_+ | SINE | Alu | Name=AluJr |
| ADediting_1423518 | chr8_85281613_+ | SINE | Alu | Name=AluJr |
| ADediting_1423519 | chr8_85281625_+ | SINE | Alu | Name=AluJr |
| ADediting_1423520 | chr8_85281652_+ | SINE | Alu | Name=AluJr |
| ADediting_1423521 | chr8_85281704_+ | SINE | Alu | Name=AluJr |
| ADediting_1423522 | chr8_85281707_+ | SINE | Alu | Name=AluJr |
| ADediting_1423523 | chr8_85281738_+ | SINE | Alu | Name=AluJr |
| ADediting_1423524 | chr8_85282956_+ | SINE | Alu | Name=AluSz |
| ADediting_1423525 | chr8_85282978_+ | SINE | Alu | Name=AluSz |
| ADediting_1423526 | chr8_85283005_+ | SINE | Alu | Name=AluSz |
| ADediting_1423527 | chr8_85283024_+ | SINE | Alu | Name=AluSz |
| ADediting_1423528 | chr8_85283025_+ | SINE | Alu | Name=AluSz |
| ADediting_1423529 | chr8_85283026_+ | SINE | Alu | Name=AluSz |
| ADediting_1423530 | chr8_85283064_+ | SINE | Alu | Name=AluSz |
| ADediting_1423531 | chr8_85283080_+ | SINE | Alu | Name=AluSz |
| ADediting_1423532 | chr8_85283105_+ | SINE | Alu | Name=AluSz |
| ADediting_1423533 | chr8_85283108_+ | SINE | Alu | Name=AluSz |
| ADediting_1423534 | chr8_85283144_+ | SINE | Alu | Name=AluSz |
| ADediting_1591588 | chr8_85281556_+ | SINE | Alu | Name=AluJr |
| ADediting_1591589 | chr8_85281630_+ | SINE | Alu | Name=AluJr |
| ADediting_1591590 | chr8_85281642_+ | SINE | Alu | Name=AluJr |
| ADediting_1591591 | chr8_85281700_+ | SINE | Alu | Name=AluJr |
| ADediting_1591592 | chr8_85283077_+ | SINE | Alu | Name=AluSz |
| ADediting_1670919 | chr8_85273001_+ | SINE | Alu | Name=AluSz |
| ADediting_1670920 | chr8_85273007_+ | SINE | Alu | Name=AluSz |
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RNA A-to-I editing events in the alternative splicing sites for CA13 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CA13 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for CA13 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for CA13 |
| RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1423509 | chr8_85281530_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-3613-3p | chr8 | 85281523 | 85281529 | 7mer-m8 | 85281507 | 85281530 | 154 | -6.57 |
| ADediting_1423510 | chr8_85281536_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-6884-3p | chr8 | 85281530 | 85281537 | 8mer-1a | 85281515 | 85281537 | 140 | -10.61 |
| ADediting_1423512 | chr8_85281552_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-4486 | chr8 | 85281550 | 85281556 | 7mer-m8 | 85281539 | 85281557 | 146 | -18.47 |
| ADediting_1423513 | chr8_85281574_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-3130-3p | chr8 | 85281570 | 85281576 | 7mer-m8 | 85281557 | 85281577 | 143 | -18.52 |
| ADediting_1423513 | chr8_85281574_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-767-5p | chr8 | 85281569 | 85281575 | 7mer-1a | 85281554 | 85281575 | 142 | -22.36 |
| ADediting_1423514 | chr8_85281576_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-548ao-3p | chr8 | 85281574 | 85281580 | 7mer-m8 | 85281561 | 85281581 | 162 | -20.7 |
| ADediting_1423515 | chr8_85281592_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-6089 | chr8 | 85281590 | 85281596 | 7mer-m8 | 85281574 | 85281597 | 162 | -32.45 |
| ADediting_1423516 | chr8_85281599_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-4785 | chr8 | 85281596 | 85281602 | 7mer-m8 | 85281585 | 85281603 | 148 | -15.04 |
| ADediting_1423518 | chr8_85281613_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-3622a-3p | chr8 | 85281609 | 85281616 | 8mer-1a | 85281596 | 85281616 | 143 | -16 |
| ADediting_1423518 | chr8_85281613_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-3622b-3p | chr8 | 85281609 | 85281616 | 8mer-1a | 85281597 | 85281616 | 153 | -20.92 |
| ADediting_1423519 | chr8_85281625_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-6765-5p | chr8 | 85281623 | 85281629 | 7mer-m8 | 85281609 | 85281630 | 153 | -25.88 |
| ADediting_1423525 | chr8_85282978_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-4793-3p | chr8 | 85282974 | 85282980 | 7mer-m8 | 85282959 | 85282981 | 145 | -18.25 |
| ADediting_1423525 | chr8_85282978_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-7703 | chr8 | 85282973 | 85282979 | 7mer-m8 | 85282958 | 85282980 | 163 | -26.85 |
| ADediting_1423526 | chr8_85283005_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-17-3p | chr8 | 85282998 | 85283004 | 7mer-m8 | 85282985 | 85283005 | 153 | -19.22 |
| ADediting_1423526 | chr8_85283005_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-485-5p | chr8 | 85283002 | 85283008 | 7mer-m8 | 85282989 | 85283009 | 153 | -17.86 |
| ADediting_1423526 | chr8_85283005_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-6884-5p | chr8 | 85283002 | 85283008 | 7mer-m8 | 85282987 | 85283009 | 146 | -20.16 |
| ADediting_1423527 | chr8_85283024_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-1298-5p | chr8 | 85283022 | 85283028 | 7mer-m8 | 85283007 | 85283029 | 151 | -18.09 |
| ADediting_1423528 | chr8_85283025_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-452-3p | chr8 | 85283022 | 85283028 | 7mer-m8 | 85283008 | 85283029 | 142 | -9.37 |
| ADediting_1423528 | chr8_85283025_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-4539 | chr8 | 85283019 | 85283025 | 7mer-1a | 85283006 | 85283025 | 145 | -22.09 |
| ADediting_1423529 | chr8_85283026_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-34b-3p | chr8 | 85283024 | 85283030 | 7mer-m8 | 85283008 | 85283031 | 148 | -10.25 |
| ADediting_1423529 | chr8_85283026_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-3614-5p | chr8 | 85283022 | 85283028 | 7mer-1a | 85283006 | 85283028 | 148 | -20.14 |
| ADediting_1423531 | chr8_85283080_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-4466 | chr8 | 85283077 | 85283083 | 7mer-m8 | 85283067 | 85283084 | 140 | -26.32 |
| ADediting_1423531 | chr8_85283080_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-675-5p | chr8 | 85283077 | 85283083 | 7mer-m8 | 85283062 | 85283084 | 142 | -20.32 |
| ADediting_1591588 | chr8_85281556_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-3940-3p | chr8 | 85281553 | 85281559 | 7mer-m8 | 85281539 | 85281560 | 151 | -22.47 |
| ADediting_1591590 | chr8_85281642_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-3680-5p | chr8 | 85281638 | 85281645 | 8mer-1a | 85281624 | 85281645 | 152 | -18.21 |
| ADediting_1591590 | chr8_85281642_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-6794-3p | chr8 | 85281636 | 85281642 | 7mer-m8 | 85281624 | 85281643 | 140 | -13.11 |
| ADediting_1591591 | chr8_85281700_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-3613-3p | chr8 | 85281693 | 85281700 | 8mer-1a | 85281677 | 85281700 | 161 | -8.6 |
| ADediting_1591591 | chr8_85281700_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-371b-5p | chr8 | 85281695 | 85281702 | 8mer-1a | 85281681 | 85281702 | 146 | -7.79 |
| ADediting_1591591 | chr8_85281700_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-373-5p | chr8 | 85281695 | 85281702 | 8mer-1a | 85281681 | 85281702 | 147 | -8.35 |
| ADediting_1591591 | chr8_85281700_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-513c-5p | chr8 | 85281697 | 85281703 | 7mer-1a | 85281682 | 85281703 | 140 | -13.63 |
| ADediting_1591591 | chr8_85281700_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-514b-5p | chr8 | 85281697 | 85281703 | 7mer-1a | 85281683 | 85281703 | 145 | -15.02 |
| ADediting_1591591 | chr8_85281700_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-616-5p | chr8 | 85281695 | 85281702 | 8mer-1a | 85281681 | 85281702 | 140 | -5.71 |
| ADediting_1591592 | chr8_85283077_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-4304 | chr8 | 85283070 | 85283076 | 7mer-m8 | 85283060 | 85283077 | 148 | -16.87 |
| ADediting_1591592 | chr8_85283077_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-6770-3p | chr8 | 85283073 | 85283079 | 7mer-m8 | 85283059 | 85283080 | 162 | -24.83 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1423509 | chr8_85281530_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-34c-3p | chr8 | 85281528 | 85281535 | 8mer-1a | 85281514 | 85281535 | 146 | -7.49 |
| ADediting_1423511 | chr8_85281544_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-5586-3p | chr8 | 85281541 | 85281547 | 7mer-m8 | 85281525 | 85281548 | 151 | -19.12 |
| ADediting_1423511 | chr8_85281544_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-6864-3p | chr8 | 85281537 | 85281543 | 7mer-m8 | 85281525 | 85281544 | 155 | -16.78 |
| ADediting_1423511 | chr8_85281544_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-759 | chr8 | 85281542 | 85281548 | 7mer-m8 | 85281529 | 85281549 | 146 | -13.27 |
| ADediting_1423512 | chr8_85281552_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-1262 | chr8 | 85281549 | 85281555 | 7mer-m8 | 85281534 | 85281556 | 144 | -15.78 |
| ADediting_1423512 | chr8_85281552_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-6736-5p | chr8 | 85281549 | 85281555 | 7mer-m8 | 85281536 | 85281556 | 143 | -20.94 |
| ADediting_1423515 | chr8_85281592_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-485-5p | chr8 | 85281590 | 85281596 | 7mer-m8 | 85281577 | 85281597 | 141 | -16.78 |
| ADediting_1423515 | chr8_85281592_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-6884-5p | chr8 | 85281590 | 85281596 | 7mer-m8 | 85281574 | 85281597 | 144 | -14.55 |
| ADediting_1423516 | chr8_85281599_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-4443 | chr8 | 85281592 | 85281599 | 8mer-1a | 85281583 | 85281599 | 144 | -16.33 |
| ADediting_1423516 | chr8_85281599_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-571 | chr8 | 85281596 | 85281602 | 7mer-m8 | 85281583 | 85281603 | 140 | -13.89 |
| ADediting_1423517 | chr8_85281612_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-3614-5p | chr8 | 85281610 | 85281616 | 7mer-1a | 85281594 | 85281616 | 140 | -14.66 |
| ADediting_1423517 | chr8_85281612_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-8081 | chr8 | 85281606 | 85281612 | 7mer-m8 | 85281591 | 85281613 | 140 | -13.1 |
| ADediting_1423518 | chr8_85281613_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-3614-5p | chr8 | 85281610 | 85281616 | 7mer-1a | 85281594 | 85281616 | 140 | -14.66 |
| ADediting_1423518 | chr8_85281613_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-8081 | chr8 | 85281606 | 85281612 | 7mer-m8 | 85281591 | 85281613 | 140 | -13.1 |
| ADediting_1423519 | chr8_85281625_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-1233-5p | chr8 | 85281619 | 85281625 | 7mer-m8 | 85281605 | 85281626 | 145 | -18.92 |
| ADediting_1423519 | chr8_85281625_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-1273h-5p | chr8 | 85281618 | 85281624 | 7mer-m8 | 85281604 | 85281625 | 146 | -18.32 |
| ADediting_1423519 | chr8_85281625_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-30b-3p | chr8 | 85281618 | 85281624 | 7mer-m8 | 85281605 | 85281625 | 142 | -15.74 |
| ADediting_1423519 | chr8_85281625_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-3689a-3p | chr8 | 85281618 | 85281624 | 7mer-m8 | 85281605 | 85281625 | 142 | -14.67 |
| ADediting_1423519 | chr8_85281625_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-3689b-3p | chr8 | 85281618 | 85281624 | 7mer-m8 | 85281606 | 85281625 | 148 | -17.29 |
| ADediting_1423519 | chr8_85281625_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-3689c | chr8 | 85281618 | 85281624 | 7mer-m8 | 85281606 | 85281625 | 148 | -17.29 |
| ADediting_1423519 | chr8_85281625_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-6778-5p | chr8 | 85281619 | 85281625 | 7mer-m8 | 85281601 | 85281626 | 153 | -31.38 |
| ADediting_1423519 | chr8_85281625_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-6779-5p | chr8 | 85281618 | 85281624 | 7mer-m8 | 85281602 | 85281625 | 150 | -24.13 |
| ADediting_1423519 | chr8_85281625_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-6780a-5p | chr8 | 85281618 | 85281624 | 7mer-m8 | 85281603 | 85281625 | 141 | -20.08 |
| ADediting_1423520 | chr8_85281652_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-6811-3p | chr8 | 85281650 | 85281657 | 8mer-1a | 85281637 | 85281657 | 155 | -19.44 |
| ADediting_1423521 | chr8_85281704_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-138-2-3p | chr8 | 85281701 | 85281707 | 7mer-m8 | 85281687 | 85281708 | 144 | -7.14 |
| ADediting_1423522 | chr8_85281707_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-138-2-3p | chr8 | 85281701 | 85281707 | 7mer-m8 | 85281687 | 85281708 | 144 | -7.14 |
| ADediting_1423524 | chr8_85282956_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-499a-5p | chr8 | 85282949 | 85282955 | 7mer-m8 | 85282936 | 85282956 | 141 | -10.48 |
| ADediting_1423526 | chr8_85283005_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-377-5p | chr8 | 85283002 | 85283008 | 7mer-m8 | 85282988 | 85283009 | 155 | -17.55 |
| ADediting_1423526 | chr8_85283005_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-6086 | chr8 | 85283002 | 85283008 | 7mer-m8 | 85282990 | 85283009 | 148 | -21.93 |
| ADediting_1423526 | chr8_85283005_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-6516-5p | chr8 | 85282998 | 85283004 | 7mer-m8 | 85282980 | 85283005 | 148 | -17.08 |
| ADediting_1423527 | chr8_85283024_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-579-3p | chr8 | 85283022 | 85283028 | 7mer-m8 | 85283011 | 85283029 | 148 | -13.38 |
| ADediting_1423527 | chr8_85283024_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-664b-3p | chr8 | 85283022 | 85283028 | 7mer-m8 | 85283008 | 85283029 | 145 | -12.06 |
| ADediting_1423528 | chr8_85283025_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-579-3p | chr8 | 85283022 | 85283028 | 7mer-m8 | 85283011 | 85283029 | 148 | -13.38 |
| ADediting_1423528 | chr8_85283025_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-664b-3p | chr8 | 85283022 | 85283028 | 7mer-m8 | 85283008 | 85283029 | 145 | -12.06 |
| ADediting_1423529 | chr8_85283026_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-579-3p | chr8 | 85283022 | 85283028 | 7mer-m8 | 85283011 | 85283029 | 148 | -13.38 |
| ADediting_1423529 | chr8_85283026_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-664b-3p | chr8 | 85283022 | 85283028 | 7mer-m8 | 85283008 | 85283029 | 145 | -12.06 |
| ADediting_1423531 | chr8_85283080_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-4455 | chr8 | 85283078 | 85283084 | 7mer-m8 | 85283070 | 85283085 | 146 | -16.9 |
| ADediting_1423533 | chr8_85283108_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-3675-3p | chr8 | 85283106 | 85283112 | 7mer-m8 | 85283092 | 85283113 | 145 | -12.58 |
| ADediting_1591588 | chr8_85281556_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-1262 | chr8 | 85281549 | 85281555 | 7mer-m8 | 85281534 | 85281556 | 144 | -15.78 |
| ADediting_1591588 | chr8_85281556_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-661 | chr8 | 85281552 | 85281558 | 7mer-m8 | 85281536 | 85281559 | 147 | -18.48 |
| ADediting_1591588 | chr8_85281556_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-6736-5p | chr8 | 85281549 | 85281555 | 7mer-m8 | 85281536 | 85281556 | 143 | -20.94 |
| ADediting_1591588 | chr8_85281556_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-6742-3p | chr8 | 85281551 | 85281557 | 7mer-m8 | 85281539 | 85281558 | 140 | -13.49 |
| ADediting_1591589 | chr8_85281630_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-4478 | chr8 | 85281627 | 85281633 | 7mer-m8 | 85281618 | 85281634 | 155 | -27.09 |
| ADediting_1591589 | chr8_85281630_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-485-5p | chr8 | 85281628 | 85281634 | 7mer-m8 | 85281613 | 85281635 | 149 | -16.49 |
| ADediting_1591589 | chr8_85281630_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-7160-5p | chr8 | 85281625 | 85281631 | 7mer-m8 | 85281612 | 85281632 | 150 | -18.56 |
| ADediting_1591589 | chr8_85281630_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-7162-3p | chr8 | 85281624 | 85281630 | 7mer-m8 | 85281613 | 85281631 | 152 | -18.37 |
| ADediting_1591590 | chr8_85281642_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-550b-3p | chr8 | 85281637 | 85281643 | 7mer-m8 | 85281626 | 85281644 | 142 | -15.43 |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1631458 | chr19_40282624_- | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-641 | chr8 | 85282649 | 85282655 | 7mer-m8 | 85282634 | 85282656 | 155 | -14.07 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337757 | chr7_5495852_- | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-589-3p | chr8 | 85282541 | 85282547 | 7mer-m8 | 85282525 | 85282548 | 151 | -16.68 |
| ADediting_1535951 | chr14_100874558_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-337-3p | chr8 | 85281452 | 85281459 | 8mer-1a | 85281438 | 85281459 | 148 | -9.38 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000185015.8 | ENST00000321764.4 | CA13-201 | hsa-miR-4775 | chr8 | 85282561 | 85282567 | 7mer-m8 | 85282547 | 85282568 | 150 | -5.07 |
| Differentially expressed gene-miRNA network |
Top |
The effects of the RNA editing to the stability of the RNA structures for CA13 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000321764.4 | protein_coding |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_1423509 | ENST00000321764.4 | chr8_85281530_+ | 1341 | -1072.60 | -1072.20 | -1105.50 |
| ADediting_1423510 | ENST00000321764.4 | chr8_85281536_+ | 1347 | -1070.90 | -1072.20 | -1105.50 |
| ADediting_1423511 | ENST00000321764.4 | chr8_85281544_+ | 1355 | -1072.50 | -1072.20 | -1105.50 |
| ADediting_1423512 | ENST00000321764.4 | chr8_85281552_+ | 1363 | -1071.80 | -1072.20 | -1105.50 |
| ADediting_1591588 | ENST00000321764.4 | chr8_85281556_+ | 1367 | -1071.50 | -1072.20 | -1105.50 |
| ADediting_1423513 | ENST00000321764.4 | chr8_85281574_+ | 1385 | -1072.60 | -1072.20 | -1105.50 |
| ADediting_1423514 | ENST00000321764.4 | chr8_85281576_+ | 1387 | -1071.70 | -1072.20 | -1105.50 |
| ADediting_1423515 | ENST00000321764.4 | chr8_85281592_+ | 1403 | -1072.20 | -1072.20 | -1105.50 |
| ADediting_1423516 | ENST00000321764.4 | chr8_85281599_+ | 1410 | -1071.50 | -1072.20 | -1105.50 |
| ADediting_1423517 | ENST00000321764.4 | chr8_85281612_+ | 1423 | -1072.30 | -1072.20 | -1105.50 |
| ADediting_1423518 | ENST00000321764.4 | chr8_85281613_+ | 1424 | -1076.10 | -1072.20 | -1105.50 |
| ADediting_1423519 | ENST00000321764.4 | chr8_85281625_+ | 1436 | -1071.50 | -1072.20 | -1105.50 |
| ADediting_1591589 | ENST00000321764.4 | chr8_85281630_+ | 1441 | -1071.50 | -1072.20 | -1105.50 |
| ADediting_1591590 | ENST00000321764.4 | chr8_85281642_+ | 1453 | -1078.10 | -1072.20 | -1105.50 |
| ADediting_1423520 | ENST00000321764.4 | chr8_85281652_+ | 1463 | -1072.20 | -1072.20 | -1105.50 |
| ADediting_1591591 | ENST00000321764.4 | chr8_85281700_+ | 1511 | -1072.30 | -1072.20 | -1105.50 |
| ADediting_1423521 | ENST00000321764.4 | chr8_85281704_+ | 1515 | -1071.90 | -1072.20 | -1105.50 |
| ADediting_1423522 | ENST00000321764.4 | chr8_85281707_+ | 1518 | -1071.90 | -1072.20 | -1105.50 |
| ADediting_1423523 | ENST00000321764.4 | chr8_85281738_+ | 1549 | -1075.60 | -1072.20 | -1105.50 |
| ADediting_1423524 | ENST00000321764.4 | chr8_85282956_+ | 2767 | -1074.00 | -1072.20 | -1105.50 |
| ADediting_1423525 | ENST00000321764.4 | chr8_85282978_+ | 2789 | -1075.30 | -1072.20 | -1105.50 |
| ADediting_1423526 | ENST00000321764.4 | chr8_85283005_+ | 2816 | -1071.90 | -1072.20 | -1105.50 |
| ADediting_1423527 | ENST00000321764.4 | chr8_85283024_+ | 2835 | -1072.20 | -1072.20 | -1105.50 |
| ADediting_1423528 | ENST00000321764.4 | chr8_85283025_+ | 2836 | -1073.30 | -1072.20 | -1105.50 |
| ADediting_1423529 | ENST00000321764.4 | chr8_85283026_+ | 2837 | -1073.80 | -1072.20 | -1105.50 |
| ADediting_1423530 | ENST00000321764.4 | chr8_85283064_+ | 2875 | -1076.00 | -1072.20 | -1105.50 |
| ADediting_1591592 | ENST00000321764.4 | chr8_85283077_+ | 2888 | -1072.20 | -1072.20 | -1105.50 |
| ADediting_1423531 | ENST00000321764.4 | chr8_85283080_+ | 2891 | -1072.40 | -1072.20 | -1105.50 |
| ADediting_1423532 | ENST00000321764.4 | chr8_85283105_+ | 2916 | -1071.90 | -1072.20 | -1105.50 |
| ADediting_1423533 | ENST00000321764.4 | chr8_85283108_+ | 2919 | -1074.50 | -1072.20 | -1105.50 |
| ADediting_1423534 | ENST00000321764.4 | chr8_85283144_+ | 2955 | -1072.20 | -1072.20 | -1105.50 |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for CA13 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | ADediting_1423525 | chr8_85282978_+ | 1.79123130729049e-05 | 0.240997234052437 | 0.00250393998873994 | 0.17111048997467 | 1.2667946683168e-08 | 0.316147923794713 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 1.16528922787377e-38 | 0.65036398312702 | 1.36937315498424e-17 | 0.459390730333857 | 1.34407277545612e-11 | 0.371801855217321 |
| AC | 1.2798308065351e-34 | 0.675127719465107 | 1.33664551437654e-20 | 0.543314985767857 | 2.8681845754392e-15 | 0.471910062947884 |
| PCC | 1.43510181374137e-37 | 0.76237871923973 | 1.22336522769988e-40 | 0.781854297392304 | 0.0129158640286486 | 0.179600293374344 |
| CER | 1.3640875222586e-17 | 0.624434973269497 | 5.29890149162476e-14 | 0.564558421580318 | 0.0809994662668544 | 0.142935042303665 |
| TCX | 7.79021964487289e-48 | 0.872286652625802 | 1.81075560334503e-19 | 0.651315748410841 | 0.082880683166268 | 0.142067056615248 |
| FP | 2.14223730413811e-26 | 0.689011339834465 | 2.58339954785075e-39 | 0.790456409697048 | 0.0883753401206519 | 0.128098260274099 |
| IFG | 0.00737012092174769 | 0.522519720657884 | 0.00265517602627159 | 0.574736382348342 | 0.169277545068214 | 0.283743430869721 |
| PG | 1.58357971872633e-44 | 0.81006018142941 | 1.56650884280995e-41 | 0.793420043230047 | 0.354065516384041 | -0.0683324980311901 |
| STG | 7.21164820076793e-12 | 0.661762173400206 | 3.32970125690106e-15 | 0.729988677551273 | 0.887800716394932 | 0.0156271399260042 |
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Relation with AD stages for CA13 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| CER | 0.000320827575902399 | 0.339798955720104 |
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RelatedDrugs for CA13 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
| CA13 | Q8N1Q1 | DB00909 | Zonisamide | Carbonic anhydrase 13 | small molecule | approved|investigational |
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RelatedDiseases for CA13 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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