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![]() | Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for KCNIP2 |
Gene summary |
| Gene information | Gene symbol | KCNIP2 | Gene ID | 30819 |
| Gene name | potassium voltage-gated channel interacting protein 2 | |
| Synonyms | KCHIP2 | |
| Cytomap | 10q24.32 | |
| Type of gene | protein-coding | |
| Description | Kv channel-interacting protein 2A-type potassium channel modulatory protein 2Kv channel interacting protein 2cardiac voltage-gated potassium channel modulatory subunitpotassium channel-interacting protein 2 | |
| Modification date | 20200320 | |
| UniProtAcc | Q9NS61, | |
| Context |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
| KCNIP2 | GO:0045163 | clustering of voltage-gated potassium channels | 11287421 |
| KCNIP2 | GO:0086009 | membrane repolarization | 21493962 |
| KCNIP2 | GO:0097623 | potassium ion export across plasma membrane | 21493962 |
| KCNIP2 | GO:1901379 | regulation of potassium ion transmembrane transport | 21493962 |
| KCNIP2 | GO:1903766 | positive regulation of potassium ion export across plasma membrane | 21349352 |
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RNA A-to-I events for KCNIP2 |
RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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RNA editing frequencies across three data sets. |
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The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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RNA A-to-I editing events in AD. |
| ADediting_156409(101836310, -), ADediting_156410(101836313, -), ADediting_156411(101836373, -), ADediting_156412(101836378, -), ADediting_156413(101836379, -), ADediting_156414(101836387, -), ADediting_156415(101836405, -), ADediting_156416(101836408, -), ADediting_156417(101836411, -), ADediting_156418(101836416, -), ADediting_156419(101836418, -), ADediting_156420(101836431, -), ADediting_156421(101836432, -), ADediting_156422(101836440, -), ADediting_156423(101836449, -), ADediting_156424(101836452, -), ADediting_156425(101836454, -), ADediting_156426(101836463, -), ADediting_156427(101836478, -), ADediting_156428(101836706, -), ADediting_156429(101836737, -), ADediting_156430(101836769, -), ADediting_156431(101836813, -), ADediting_156432(101836823, -), ADediting_156433(101836826, -), ADediting_156434(101836839, -), ADediting_156435(101836849, -), ADediting_156436(101836861, -), ADediting_156437(101836923, -), ADediting_156438(101837073, -), ADediting_156439(101837075, -), ADediting_156440(101837097, -), ADediting_156441(101837445, -), ADediting_156442(101837481, -), ADediting_156443(101837521, -), ADediting_156444(101837540, -), ADediting_156445(101837541, -), ADediting_156446(101837545, -), ADediting_156447(101837547, -), ADediting_156448(101837625, -), ADediting_156449(101837628, -), ADediting_1522163(101837021, -), |
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RNA editing positional annotations for KCNIP2 using Annovar |
Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_156409 | chr10_101836310_- | intronic |
| ADediting_156410 | chr10_101836313_- | intronic |
| ADediting_156411 | chr10_101836373_- | intronic |
| ADediting_156412 | chr10_101836378_- | intronic |
| ADediting_156413 | chr10_101836379_- | intronic |
| ADediting_156414 | chr10_101836387_- | intronic |
| ADediting_156415 | chr10_101836405_- | intronic |
| ADediting_156416 | chr10_101836408_- | intronic |
| ADediting_156417 | chr10_101836411_- | intronic |
| ADediting_156418 | chr10_101836416_- | intronic |
| ADediting_156419 | chr10_101836418_- | intronic |
| ADediting_156420 | chr10_101836431_- | intronic |
| ADediting_156421 | chr10_101836432_- | intronic |
| ADediting_156422 | chr10_101836440_- | intronic |
| ADediting_156423 | chr10_101836449_- | intronic |
| ADediting_156424 | chr10_101836452_- | intronic |
| ADediting_156425 | chr10_101836454_- | intronic |
| ADediting_156426 | chr10_101836463_- | intronic |
| ADediting_156427 | chr10_101836478_- | intronic |
| ADediting_156428 | chr10_101836706_- | intronic |
| ADediting_156429 | chr10_101836737_- | intronic |
| ADediting_156430 | chr10_101836769_- | intronic |
| ADediting_156431 | chr10_101836813_- | intronic |
| ADediting_156432 | chr10_101836823_- | intronic |
| ADediting_156433 | chr10_101836826_- | intronic |
| ADediting_156434 | chr10_101836839_- | intronic |
| ADediting_156435 | chr10_101836849_- | intronic |
| ADediting_156436 | chr10_101836861_- | intronic |
| ADediting_156437 | chr10_101836923_- | intronic |
| ADediting_156438 | chr10_101837073_- | intronic |
| ADediting_156439 | chr10_101837075_- | intronic |
| ADediting_156440 | chr10_101837097_- | intronic |
| ADediting_156441 | chr10_101837445_- | intronic |
| ADediting_156442 | chr10_101837481_- | intronic |
| ADediting_156443 | chr10_101837521_- | intronic |
| ADediting_156444 | chr10_101837540_- | intronic |
| ADediting_156445 | chr10_101837541_- | intronic |
| ADediting_156446 | chr10_101837545_- | intronic |
| ADediting_156447 | chr10_101837547_- | intronic |
| ADediting_156448 | chr10_101837625_- | intronic |
| ADediting_156449 | chr10_101837628_- | intronic |
| ADediting_1522163 | chr10_101837021_- | intronic |
Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_156409 | chr10_101836310_- | SINE | Alu | Name=AluSz6 |
| ADediting_156410 | chr10_101836313_- | SINE | Alu | Name=AluSz6 |
| ADediting_156411 | chr10_101836373_- | SINE | Alu | Name=AluSz6 |
| ADediting_156412 | chr10_101836378_- | SINE | Alu | Name=AluSz6 |
| ADediting_156413 | chr10_101836379_- | SINE | Alu | Name=AluSz6 |
| ADediting_156414 | chr10_101836387_- | SINE | Alu | Name=AluSz6 |
| ADediting_156415 | chr10_101836405_- | SINE | Alu | Name=AluSz6 |
| ADediting_156416 | chr10_101836408_- | SINE | Alu | Name=AluSz6 |
| ADediting_156417 | chr10_101836411_- | SINE | Alu | Name=AluSz6 |
| ADediting_156418 | chr10_101836416_- | SINE | Alu | Name=AluSz6 |
| ADediting_156419 | chr10_101836418_- | SINE | Alu | Name=AluSz6 |
| ADediting_156420 | chr10_101836431_- | SINE | Alu | Name=AluSz6 |
| ADediting_156421 | chr10_101836432_- | SINE | Alu | Name=AluSz6 |
| ADediting_156422 | chr10_101836440_- | SINE | Alu | Name=AluSz6 |
| ADediting_156423 | chr10_101836449_- | SINE | Alu | Name=AluSz6 |
| ADediting_156424 | chr10_101836452_- | SINE | Alu | Name=AluSz6 |
| ADediting_156425 | chr10_101836454_- | SINE | Alu | Name=AluSz6 |
| ADediting_156426 | chr10_101836463_- | SINE | Alu | Name=AluSz6 |
| ADediting_156427 | chr10_101836478_- | SINE | Alu | Name=AluSz6 |
| ADediting_156428 | chr10_101836706_- | SINE | Alu | Name=AluSg |
| ADediting_156429 | chr10_101836737_- | SINE | Alu | Name=AluSg |
| ADediting_156430 | chr10_101836769_- | SINE | Alu | Name=AluSg |
| ADediting_156431 | chr10_101836813_- | SINE | Alu | Name=AluSg |
| ADediting_156432 | chr10_101836823_- | SINE | Alu | Name=AluSg |
| ADediting_156433 | chr10_101836826_- | SINE | Alu | Name=AluSg |
| ADediting_156434 | chr10_101836839_- | SINE | Alu | Name=AluSg |
| ADediting_156435 | chr10_101836849_- | SINE | Alu | Name=AluSg |
| ADediting_156436 | chr10_101836861_- | SINE | Alu | Name=AluSg |
| ADediting_156437 | chr10_101836923_- | SINE | Alu | Name=AluSg |
| ADediting_156438 | chr10_101837073_- | SINE | Alu | Name=AluJr |
| ADediting_156439 | chr10_101837075_- | SINE | Alu | Name=AluJr |
| ADediting_156440 | chr10_101837097_- | SINE | Alu | Name=AluJr |
| ADediting_156441 | chr10_101837445_- | SINE | Alu | Name=AluSg |
| ADediting_156442 | chr10_101837481_- | SINE | Alu | Name=AluSg |
| ADediting_156443 | chr10_101837521_- | SINE | Alu | Name=AluSg |
| ADediting_156444 | chr10_101837540_- | SINE | Alu | Name=AluSg |
| ADediting_156445 | chr10_101837541_- | SINE | Alu | Name=AluSg |
| ADediting_156446 | chr10_101837545_- | SINE | Alu | Name=AluSg |
| ADediting_156447 | chr10_101837547_- | SINE | Alu | Name=AluSg |
| ADediting_156448 | chr10_101837625_- | SINE | Alu | Name=AluSg |
| ADediting_156449 | chr10_101837628_- | SINE | Alu | Name=AluSg |
| ADediting_1522163 | chr10_101837021_- | SINE | Alu | Name=AluJr |
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RNA A-to-I editing events in the alternative splicing sites for KCNIP2 |
RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for KCNIP2 |
Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.* The grey color means N/A. |
Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.* Click on the image to enlarge it in a new window. |
- Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.* Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for KCNIP2 |
- Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for KCNIP2 |
RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337758 | chr7_5495892_- | ENSG00000120049.19 | ENST00000348850.9 | KCNIP2-203 | hsa-miR-589-5p | chr10 | 101827066 | 101827072 | 7mer-m8 | 101827065 | 101827085 | 149 | -17.27 |
| ADediting_1337758 | chr7_5495892_- | ENSG00000120049.19 | ENST00000356640.6 | KCNIP2-206 | hsa-miR-589-5p | chr10 | 101827066 | 101827072 | 7mer-m8 | 101827065 | 101827085 | 149 | -17.27 |
| ADediting_1337758 | chr7_5495892_- | ENSG00000120049.19 | ENST00000358038.7 | KCNIP2-207 | hsa-miR-589-5p | chr10 | 101827066 | 101827072 | 7mer-m8 | 101827065 | 101827085 | 149 | -17.27 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000120049.19 | ENST00000348850.9 | KCNIP2-203 | hsa-miR-641 | chr10 | 101827023 | 101827029 | 7mer-m8 | 101827022 | 101827046 | 149 | -14.1 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000120049.19 | ENST00000356640.6 | KCNIP2-206 | hsa-miR-641 | chr10 | 101827023 | 101827029 | 7mer-m8 | 101827022 | 101827046 | 149 | -14.1 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000120049.19 | ENST00000358038.7 | KCNIP2-207 | hsa-miR-641 | chr10 | 101827023 | 101827029 | 7mer-m8 | 101827022 | 101827046 | 149 | -14.1 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000120049.19 | ENST00000348850.9 | KCNIP2-203 | hsa-miR-641 | chr10 | 101826544 | 101826550 | 7mer-m8 | 101826543 | 101826566 | 140 | -15.46 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000120049.19 | ENST00000356640.6 | KCNIP2-206 | hsa-miR-641 | chr10 | 101826544 | 101826550 | 7mer-m8 | 101826543 | 101826566 | 140 | -15.46 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000120049.19 | ENST00000358038.7 | KCNIP2-207 | hsa-miR-641 | chr10 | 101826544 | 101826550 | 7mer-m8 | 101826543 | 101826566 | 140 | -15.46 |
RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for KCNIP2 |
- RNA A-to-I editing in mRNA.* Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for KCNIP2 |
Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| CER | ADediting_156415 | chr10_101836405_- | 0.00598905409913573 | 0.223429281322875 | 1.78622966877295e-05 | 0.34249369175294 | 0.00193784930328057 | 0.251113670144945 |
| CER | ADediting_156426 | chr10_101836463_- | 0.0144742924529716 | 0.199315475912399 | 0.000500004282207475 | 0.280810995457495 | 0.000185000824528415 | 0.300681095703738 |
| CER | ADediting_156427 | chr10_101836478_- | 0.000203617871339181 | 0.298826390870624 | 7.6200538555384e-06 | 0.356342480690028 | 0.014311834165735 | 0.199640350836745 |
| CER | ADediting_156429 | chr10_101836737_- | 1.13053181818995e-05 | 0.350010557885911 | 5.16001378395474e-08 | 0.426758562276759 | 0.00234017965864909 | 0.246694038228749 |
| CER | ADediting_156431 | chr10_101836813_- | 0.000217829618740109 | 0.297513851911207 | 3.87248873447739e-05 | 0.329318934307883 | 0.0434906651808388 | 0.16509605889137 |
| CER | ADediting_156432 | chr10_101836823_- | 2.32718095912204e-05 | 0.338056368388303 | 1.60295539345583e-06 | 0.380123922586383 | 0.0225831546067866 | 0.186121980536905 |
| CER | ADediting_156433 | chr10_101836826_- | 4.7206929534152e-05 | 0.325847858053787 | 9.31970494206554e-06 | 0.353127647044173 | 0.0886539948732774 | 0.139498317467715 |
| CER | ADediting_156434 | chr10_101836839_- | 0.000997459965679178 | 0.266093048661761 | 4.18973034099962e-05 | 0.32794401161694 | 0.00760413214045015 | 0.217145731139613 |
| CER | ADediting_156435 | chr10_101836849_- | 0.00190378791813702 | 0.251525193102553 | 5.53494992559753e-05 | 0.323028293248755 | 0.00558583039450026 | 0.225232942242201 |
| CER | ADediting_156437 | chr10_101836923_- | 0.00510160524953051 | 0.227559437558023 | 1.23548129439872e-05 | 0.348566726946776 | 0.00629558447579997 | 0.222129240200517 |
| CER | ADediting_156440 | chr10_101837097_- | 0.00348588902542669 | 0.237094809006582 | 8.93616466467481e-05 | 0.314368008482603 | 0.2412629921329 | 0.0962628951174474 |
| CER | ADediting_156444 | chr10_101837540_- | 0.000112385995652819 | 0.3101277390148 | 6.5068784062046e-05 | 0.320132935947415 | 0.0371056880222086 | 0.170385523013439 |
| CER | ADediting_156445 | chr10_101837541_- | 7.8604306830964e-05 | 0.316712949672577 | 9.70192986961917e-05 | 0.312854591678761 | 0.0478488491859292 | 0.161847988803238 |
| CER | ADediting_156447 | chr10_101837547_- | 0.000223714758440639 | 0.296993503338552 | 3.28638681440652e-05 | 0.33216362903112 | 0.00953363772638633 | 0.211036537801954 |
| CER | ADediting_156449 | chr10_101837628_- | 0.00019652913774082 | 0.299513248680429 | 2.91231513002098e-05 | 0.334240520053167 | 0.471290320570696 | 0.0592629161968711 |
Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 1.26954991442444e-36 | 0.636559633569336 | 9.83820988024385e-65 | 0.780258932062147 | 0.000134434239219936 | 0.215182139936773 |
| AC | 1.36400368069517e-74 | 0.860487092443048 | 3.28494949002105e-95 | 0.907154298610643 | 0.00455001735477619 | 0.178891867490741 |
| PCC | 2.68870698832437e-40 | 0.779778453476093 | 9.63254072601883e-43 | 0.794140842609145 | 0.0131097358442238 | 0.179223172324977 |
| CER | 6.52730705175991e-10 | 0.477413287436246 | 6.69491716741132e-07 | 0.392665008668919 | 0.595939647149175 | 0.0436390358877047 |
| TCX | 1.48159339514361e-11 | 0.51546367036872 | 3.1534118304441e-24 | 0.709160663435962 | 0.00110514597102449 | -0.26383643181835 |
| FP | 6.22615075033538e-33 | 0.74627041565154 | 2.16585161453401e-35 | 0.764469889509959 | 0.00804863665374537 | 0.198051468475363 |
| IFG | 0.000768307801030539 | 0.628408118160118 | 3.89564179607081e-05 | 0.726659447677738 | 0.113610529983953 | 0.324415670130435 |
| PG | 2.67567571462415e-26 | 0.67711813243743 | 7.06215815064742e-26 | 0.672891137698489 | 0.156888633329074 | -0.104217526480398 |
| STG | 1.91043803771646e-18 | 0.78102933282962 | 1.56135440314094e-18 | 0.782245014185796 | 0.593026898986692 | -0.0591489866623304 |
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Relation with AD stages for KCNIP2 |
Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| CER | ADediting_156415 | chr10_101836405_- | 1.42985586456859e-06 | 0.444626454487412 |
| CER | ADediting_156417 | chr10_101836411_- | 0.000691757842670272 | 0.321503097188434 |
| CER | ADediting_156429 | chr10_101836737_- | 7.31684631052757e-05 | 0.37213428176907 |
| CER | ADediting_156432 | chr10_101836823_- | 0.000167401197621562 | 0.354456834391413 |
| CER | ADediting_156434 | chr10_101836839_- | 0.000401506310201667 | 0.33457319424004 |
| CER | ADediting_156437 | chr10_101836923_- | 4.12059891994032e-05 | 0.383824271725472 |
| CER | ADediting_156439 | chr10_101837075_- | 0.000182131239271951 | 0.352596348349754 |
| CER | ADediting_156443 | chr10_101837521_- | 0.00110010394278982 | 0.309877222961142 |
Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
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RelatedDrugs for KCNIP2 |
Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for KCNIP2 |
Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |