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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for HDLBP |
 Gene summary |
| Gene information | Gene symbol | HDLBP | Gene ID | 3069 |
| Gene name | high density lipoprotein binding protein | |
| Synonyms | HBP|PRO2900|VGL | |
| Cytomap | 2q37.3 | |
| Type of gene | protein-coding | |
| Description | vigilinHDL-binding protein | |
| Modification date | 20200313 | |
| UniProtAcc | Q00341, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for HDLBP |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_857071(241231219, -), ADediting_857072(241232368, -), ADediting_857073(241232381, -), ADediting_857074(241232404, -), ADediting_857075(241232413, -), ADediting_857076(241232436, -), ADediting_857077(241232479, -), ADediting_857078(241232713, -), ADediting_857079(241232714, -), ADediting_857080(241232732, -), ADediting_857081(241232751, -), ADediting_857082(241232767, -), ADediting_857083(241245256, -), ADediting_857084(241245260, -), ADediting_857085(241245294, -), ADediting_857086(241245308, -), ADediting_857087(241245312, -), ADediting_857088(241245322, -), ADediting_857089(241245348, -), ADediting_857090(241245356, -), ADediting_857091(241245357, -), ADediting_857092(241245365, -), ADediting_857093(241245369, -), ADediting_857094(241245397, -), ADediting_857095(241245398, -), ADediting_857096(241245583, -), ADediting_857097(241245593, -), ADediting_857098(241245630, -), ADediting_857099(241245633, -), ADediting_857100(241245653, -), ADediting_857101(241245654, -), ADediting_857102(241245690, -), ADediting_857103(241245693, -), ADediting_857104(241245694, -), ADediting_857105(241245702, -), ADediting_857106(241245716, -), ADediting_857107(241245719, -), ADediting_857108(241245720, -), ADediting_857109(241245724, -), ADediting_857110(241245726, -), ADediting_857111(241245740, -), ADediting_857112(241245742, -), ADediting_857113(241245745, -), ADediting_857114(241245756, -), ADediting_857115(241245769, -), ADediting_857118(241250998, -), ADediting_857119(241251003, -), ADediting_857120(241251049, -), ADediting_857121(241251065, -), ADediting_857122(241251070, -), ADediting_857123(241251075, -), ADediting_857124(241251084, -), ADediting_857125(241251158, -), ADediting_857126(241251186, -), ADediting_857127(241251205, -), ADediting_857128(241251209, -), ADediting_857129(241251210, -), ADediting_857130(241251226, -), ADediting_857131(241251231, -), ADediting_857132(241251232, -), ADediting_857133(241251718, -), ADediting_857134(241251730, -), ADediting_857135(241251745, -), ADediting_857136(241251772, -), ADediting_857137(241251792, -), ADediting_857138(241251812, -), ADediting_857139(241251877, -), ADediting_857140(241251894, -), ADediting_857141(241251901, -), ADediting_857142(241252245, -), ADediting_857143(241252258, -), ADediting_857144(241252272, -), ADediting_857145(241252299, -), ADediting_857146(241252310, -), ADediting_857147(241252319, -), ADediting_857148(241252402, -), ADediting_857149(241252415, -), ADediting_857150(241252416, -), ADediting_857151(241252419, -), ADediting_857152(241252439, -), ADediting_857153(241252442, -), ADediting_857154(241252480, -), ADediting_857155(241252488, -), ADediting_857157(241252496, -), ADediting_857158(241252498, -), ADediting_857159(241252500, -), ADediting_857167(241254545, -), ADediting_857168(241254552, -), ADediting_857169(241254557, -), ADediting_857170(241254581, -), ADediting_857171(241254582, -), ADediting_857172(241254590, -), ADediting_857173(241254596, -), ADediting_857174(241254600, -), ADediting_857175(241254617, -), ADediting_857176(241254629, -), ADediting_857184(241257301, -), ADediting_857185(241257325, -), ADediting_857186(241257397, -), ADediting_857195(241277885, -), ADediting_857204(241281259, -), ADediting_857206(241283760, -), ADediting_857207(241284954, -), ADediting_857208(241284983, -), ADediting_857209(241285019, -), ADediting_857210(241285778, -), ADediting_857211(241285826, -), ADediting_857212(241285908, -), ADediting_857213(241286191, -), ADediting_857214(241287221, -), ADediting_857215(241287222, -), ADediting_857216(241287226, -), ADediting_857217(241287304, -), ADediting_857218(241287311, -), ADediting_857219(241287346, -), ADediting_857220(241287517, -), ADediting_857221(241287558, -), ADediting_857222(241287564, -), ADediting_857223(241287574, -), ADediting_857224(241287584, -), ADediting_857225(241287619, -), ADediting_857226(241287668, -), ADediting_857227(241294624, -), ADediting_857228(241294974, -), ADediting_857229(241294980, -), ADediting_857230(241295019, -), ADediting_857231(241295045, -), ADediting_857232(241295100, -), ADediting_857233(241299716, -), ADediting_857234(241299726, -), ADediting_857235(241299742, -), ADediting_857236(241299906, -), ADediting_857237(241301077, -), ADediting_857238(241301115, -), ADediting_857239(241301141, -), ADediting_857240(241301187, -), ADediting_857241(241301190, -), ADediting_857242(241301192, -), ADediting_857243(241301216, -), ADediting_857244(241301259, -), ADediting_857245(241301260, -), ADediting_857246(241302010, -), ADediting_857247(241302013, -), ADediting_857248(241302038, -), ADediting_857249(241302046, -), ADediting_857250(241302529, -), ADediting_857251(241304020, -), ADediting_857252(241305248, -), ADediting_857253(241305262, -), ADediting_857254(241305288, -), ADediting_857255(241305396, -), ADediting_857256(241305850, -), ADediting_857257(241305872, -), ADediting_857258(241305899, -), ADediting_857259(241306039, -), ADediting_857260(241306347, -), ADediting_857261(241306358, -), ADediting_857262(241306397, -), ADediting_857263(241306466, -), ADediting_857264(241306483, -), ADediting_857265(241306486, -), ADediting_857266(241306491, -), ADediting_857267(241306501, -), ADediting_857268(241306554, -), ADediting_857269(241306642, -), ADediting_857270(241306689, -), ADediting_857271(241306690, -), ADediting_857272(241306691, -), ADediting_857273(241306716, -), ADediting_857274(241306782, -), ADediting_857275(241306799, -), ADediting_857276(241306800, -), ADediting_857277(241306838, -), ADediting_857278(241306841, -), ADediting_857279(241313551, -), ADediting_1562802(241231222, -), ADediting_1562803(241232338, -), ADediting_1562804(241245281, -), ADediting_1562805(241245558, -), ADediting_1562806(241245637, -), ADediting_1562807(241245680, -), ADediting_1562808(241245707, -), ADediting_1562815(241250997, -), ADediting_1562816(241251061, -), ADediting_1562817(241251062, -), ADediting_1562818(241251078, -), ADediting_1562819(241251088, -), ADediting_1562820(241251196, -), ADediting_1562822(241251809, -), ADediting_1562823(241251914, -), ADediting_1562824(241251954, -), ADediting_1562825(241252285, -), ADediting_1562826(241252298, -), ADediting_1562827(241252445, -), ADediting_1562828(241252476, -), ADediting_1562832(241287717, -), ADediting_1636549(241262327, -), ADediting_1636550(241286833, -), ADediting_1636551(241286834, -), ADediting_1636552(241292917, -), ADediting_1636553(241292924, -), ADediting_1636554(241303990, -), ADediting_1636555(241304039, -), |
Top |
RNA editing positional annotations for HDLBP using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_857071 | chr2_241231219_- | intronic |
| ADediting_857072 | chr2_241232368_- | intronic |
| ADediting_857073 | chr2_241232381_- | intronic |
| ADediting_857074 | chr2_241232404_- | intronic |
| ADediting_857075 | chr2_241232413_- | intronic |
| ADediting_857076 | chr2_241232436_- | intronic |
| ADediting_857077 | chr2_241232479_- | intronic |
| ADediting_857078 | chr2_241232713_- | intronic |
| ADediting_857079 | chr2_241232714_- | intronic |
| ADediting_857080 | chr2_241232732_- | intronic |
| ADediting_857081 | chr2_241232751_- | intronic |
| ADediting_857082 | chr2_241232767_- | intronic |
| ADediting_857083 | chr2_241245256_- | intronic |
| ADediting_857084 | chr2_241245260_- | intronic |
| ADediting_857085 | chr2_241245294_- | intronic |
| ADediting_857086 | chr2_241245308_- | intronic |
| ADediting_857087 | chr2_241245312_- | intronic |
| ADediting_857088 | chr2_241245322_- | intronic |
| ADediting_857089 | chr2_241245348_- | intronic |
| ADediting_857090 | chr2_241245356_- | intronic |
| ADediting_857091 | chr2_241245357_- | intronic |
| ADediting_857092 | chr2_241245365_- | intronic |
| ADediting_857093 | chr2_241245369_- | intronic |
| ADediting_857094 | chr2_241245397_- | intronic |
| ADediting_857095 | chr2_241245398_- | intronic |
| ADediting_857096 | chr2_241245583_- | intronic |
| ADediting_857097 | chr2_241245593_- | intronic |
| ADediting_857098 | chr2_241245630_- | intronic |
| ADediting_857099 | chr2_241245633_- | intronic |
| ADediting_857100 | chr2_241245653_- | intronic |
| ADediting_857101 | chr2_241245654_- | intronic |
| ADediting_857102 | chr2_241245690_- | intronic |
| ADediting_857103 | chr2_241245693_- | intronic |
| ADediting_857104 | chr2_241245694_- | intronic |
| ADediting_857105 | chr2_241245702_- | intronic |
| ADediting_857106 | chr2_241245716_- | intronic |
| ADediting_857107 | chr2_241245719_- | intronic |
| ADediting_857108 | chr2_241245720_- | intronic |
| ADediting_857109 | chr2_241245724_- | intronic |
| ADediting_857110 | chr2_241245726_- | intronic |
| ADediting_857111 | chr2_241245740_- | intronic |
| ADediting_857112 | chr2_241245742_- | intronic |
| ADediting_857113 | chr2_241245745_- | intronic |
| ADediting_857114 | chr2_241245756_- | intronic |
| ADediting_857115 | chr2_241245769_- | intronic |
| ADediting_857118 | chr2_241250998_- | intronic |
| ADediting_857119 | chr2_241251003_- | intronic |
| ADediting_857120 | chr2_241251049_- | intronic |
| ADediting_857121 | chr2_241251065_- | intronic |
| ADediting_857122 | chr2_241251070_- | intronic |
| ADediting_857123 | chr2_241251075_- | intronic |
| ADediting_857124 | chr2_241251084_- | intronic |
| ADediting_857125 | chr2_241251158_- | intronic |
| ADediting_857126 | chr2_241251186_- | intronic |
| ADediting_857127 | chr2_241251205_- | intronic |
| ADediting_857128 | chr2_241251209_- | intronic |
| ADediting_857129 | chr2_241251210_- | intronic |
| ADediting_857130 | chr2_241251226_- | intronic |
| ADediting_857131 | chr2_241251231_- | intronic |
| ADediting_857132 | chr2_241251232_- | intronic |
| ADediting_857133 | chr2_241251718_- | intronic |
| ADediting_857134 | chr2_241251730_- | intronic |
| ADediting_857135 | chr2_241251745_- | intronic |
| ADediting_857136 | chr2_241251772_- | intronic |
| ADediting_857137 | chr2_241251792_- | intronic |
| ADediting_857138 | chr2_241251812_- | intronic |
| ADediting_857139 | chr2_241251877_- | intronic |
| ADediting_857140 | chr2_241251894_- | intronic |
| ADediting_857141 | chr2_241251901_- | intronic |
| ADediting_857142 | chr2_241252245_- | intronic |
| ADediting_857143 | chr2_241252258_- | intronic |
| ADediting_857144 | chr2_241252272_- | intronic |
| ADediting_857145 | chr2_241252299_- | intronic |
| ADediting_857146 | chr2_241252310_- | intronic |
| ADediting_857147 | chr2_241252319_- | intronic |
| ADediting_857148 | chr2_241252402_- | intronic |
| ADediting_857149 | chr2_241252415_- | intronic |
| ADediting_857150 | chr2_241252416_- | intronic |
| ADediting_857151 | chr2_241252419_- | intronic |
| ADediting_857152 | chr2_241252439_- | intronic |
| ADediting_857153 | chr2_241252442_- | intronic |
| ADediting_857154 | chr2_241252480_- | intronic |
| ADediting_857155 | chr2_241252488_- | intronic |
| ADediting_857157 | chr2_241252496_- | intronic |
| ADediting_857158 | chr2_241252498_- | intronic |
| ADediting_857159 | chr2_241252500_- | intronic |
| ADediting_857167 | chr2_241254545_- | intronic |
| ADediting_857168 | chr2_241254552_- | intronic |
| ADediting_857169 | chr2_241254557_- | intronic |
| ADediting_857170 | chr2_241254581_- | intronic |
| ADediting_857171 | chr2_241254582_- | intronic |
| ADediting_857172 | chr2_241254590_- | intronic |
| ADediting_857173 | chr2_241254596_- | intronic |
| ADediting_857174 | chr2_241254600_- | intronic |
| ADediting_857175 | chr2_241254617_- | intronic |
| ADediting_857176 | chr2_241254629_- | intronic |
| ADediting_857184 | chr2_241257301_- | intronic |
| ADediting_857185 | chr2_241257325_- | intronic |
| ADediting_857186 | chr2_241257397_- | intronic |
| ADediting_857195 | chr2_241277885_- | intronic |
| ADediting_857204 | chr2_241281259_- | intronic |
| ADediting_857206 | chr2_241283760_- | intronic |
| ADediting_857207 | chr2_241284954_- | intronic |
| ADediting_857208 | chr2_241284983_- | intronic |
| ADediting_857209 | chr2_241285019_- | intronic |
| ADediting_857210 | chr2_241285778_- | intronic |
| ADediting_857211 | chr2_241285826_- | intronic |
| ADediting_857212 | chr2_241285908_- | intronic |
| ADediting_857213 | chr2_241286191_- | intronic |
| ADediting_857214 | chr2_241287221_- | intronic |
| ADediting_857215 | chr2_241287222_- | intronic |
| ADediting_857216 | chr2_241287226_- | intronic |
| ADediting_857217 | chr2_241287304_- | intronic |
| ADediting_857218 | chr2_241287311_- | intronic |
| ADediting_857219 | chr2_241287346_- | intronic |
| ADediting_857220 | chr2_241287517_- | intronic |
| ADediting_857221 | chr2_241287558_- | intronic |
| ADediting_857222 | chr2_241287564_- | intronic |
| ADediting_857223 | chr2_241287574_- | intronic |
| ADediting_857224 | chr2_241287584_- | intronic |
| ADediting_857225 | chr2_241287619_- | intronic |
| ADediting_857226 | chr2_241287668_- | intronic |
| ADediting_857227 | chr2_241294624_- | intronic |
| ADediting_857228 | chr2_241294974_- | intronic |
| ADediting_857229 | chr2_241294980_- | intronic |
| ADediting_857230 | chr2_241295019_- | intronic |
| ADediting_857231 | chr2_241295045_- | intronic |
| ADediting_857232 | chr2_241295100_- | intronic |
| ADediting_857233 | chr2_241299716_- | intronic |
| ADediting_857234 | chr2_241299726_- | intronic |
| ADediting_857235 | chr2_241299742_- | intronic |
| ADediting_857236 | chr2_241299906_- | intronic |
| ADediting_857237 | chr2_241301077_- | intronic |
| ADediting_857238 | chr2_241301115_- | intronic |
| ADediting_857239 | chr2_241301141_- | intronic |
| ADediting_857240 | chr2_241301187_- | intronic |
| ADediting_857241 | chr2_241301190_- | intronic |
| ADediting_857242 | chr2_241301192_- | intronic |
| ADediting_857243 | chr2_241301216_- | intronic |
| ADediting_857244 | chr2_241301259_- | intronic |
| ADediting_857245 | chr2_241301260_- | intronic |
| ADediting_857246 | chr2_241302010_- | intronic |
| ADediting_857247 | chr2_241302013_- | intronic |
| ADediting_857248 | chr2_241302038_- | intronic |
| ADediting_857249 | chr2_241302046_- | intronic |
| ADediting_857250 | chr2_241302529_- | intronic |
| ADediting_857251 | chr2_241304020_- | intronic |
| ADediting_857252 | chr2_241305248_- | intronic |
| ADediting_857253 | chr2_241305262_- | intronic |
| ADediting_857254 | chr2_241305288_- | intronic |
| ADediting_857255 | chr2_241305396_- | intronic |
| ADediting_857256 | chr2_241305850_- | intronic |
| ADediting_857257 | chr2_241305872_- | intronic |
| ADediting_857258 | chr2_241305899_- | intronic |
| ADediting_857259 | chr2_241306039_- | intronic |
| ADediting_857260 | chr2_241306347_- | intronic |
| ADediting_857261 | chr2_241306358_- | intronic |
| ADediting_857262 | chr2_241306397_- | intronic |
| ADediting_857263 | chr2_241306466_- | intronic |
| ADediting_857264 | chr2_241306483_- | intronic |
| ADediting_857265 | chr2_241306486_- | intronic |
| ADediting_857266 | chr2_241306491_- | intronic |
| ADediting_857267 | chr2_241306501_- | intronic |
| ADediting_857268 | chr2_241306554_- | intronic |
| ADediting_857269 | chr2_241306642_- | intronic |
| ADediting_857270 | chr2_241306689_- | intronic |
| ADediting_857271 | chr2_241306690_- | intronic |
| ADediting_857272 | chr2_241306691_- | intronic |
| ADediting_857273 | chr2_241306716_- | intronic |
| ADediting_857274 | chr2_241306782_- | intronic |
| ADediting_857275 | chr2_241306799_- | intronic |
| ADediting_857276 | chr2_241306800_- | intronic |
| ADediting_857277 | chr2_241306838_- | intronic |
| ADediting_857278 | chr2_241306841_- | intronic |
| ADediting_857279 | chr2_241313551_- | intronic |
| ADediting_1562802 | chr2_241231222_- | intronic |
| ADediting_1562803 | chr2_241232338_- | intronic |
| ADediting_1562804 | chr2_241245281_- | intronic |
| ADediting_1562805 | chr2_241245558_- | intronic |
| ADediting_1562806 | chr2_241245637_- | intronic |
| ADediting_1562807 | chr2_241245680_- | intronic |
| ADediting_1562808 | chr2_241245707_- | intronic |
| ADediting_1562815 | chr2_241250997_- | intronic |
| ADediting_1562816 | chr2_241251061_- | intronic |
| ADediting_1562817 | chr2_241251062_- | intronic |
| ADediting_1562818 | chr2_241251078_- | intronic |
| ADediting_1562819 | chr2_241251088_- | intronic |
| ADediting_1562820 | chr2_241251196_- | intronic |
| ADediting_1562822 | chr2_241251809_- | intronic |
| ADediting_1562823 | chr2_241251914_- | intronic |
| ADediting_1562824 | chr2_241251954_- | intronic |
| ADediting_1562825 | chr2_241252285_- | intronic |
| ADediting_1562826 | chr2_241252298_- | intronic |
| ADediting_1562827 | chr2_241252445_- | intronic |
| ADediting_1562828 | chr2_241252476_- | intronic |
| ADediting_1562832 | chr2_241287717_- | intronic |
| ADediting_1636549 | chr2_241262327_- | intronic |
| ADediting_1636550 | chr2_241286833_- | intronic |
| ADediting_1636551 | chr2_241286834_- | intronic |
| ADediting_1636552 | chr2_241292917_- | intronic |
| ADediting_1636553 | chr2_241292924_- | intronic |
| ADediting_1636554 | chr2_241303990_- | intronic |
| ADediting_1636555 | chr2_241304039_- | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_857071 | chr2_241231219_- | SINE | Alu | Name=AluSp |
| ADediting_857072 | chr2_241232368_- | SINE | Alu | Name=AluSx |
| ADediting_857073 | chr2_241232381_- | SINE | Alu | Name=AluSx |
| ADediting_857074 | chr2_241232404_- | SINE | Alu | Name=AluSx |
| ADediting_857075 | chr2_241232413_- | SINE | Alu | Name=AluSx |
| ADediting_857076 | chr2_241232436_- | SINE | Alu | Name=AluSx |
| ADediting_857077 | chr2_241232479_- | SINE | Alu | Name=AluSx |
| ADediting_857078 | chr2_241232713_- | SINE | Alu | Name=AluSz6 |
| ADediting_857079 | chr2_241232714_- | SINE | Alu | Name=AluSz6 |
| ADediting_857080 | chr2_241232732_- | SINE | Alu | Name=AluSz6 |
| ADediting_857081 | chr2_241232751_- | SINE | Alu | Name=AluSz6 |
| ADediting_857082 | chr2_241232767_- | SINE | Alu | Name=AluSz6 |
| ADediting_857083 | chr2_241245256_- | SINE | Alu | Name=AluJb |
| ADediting_857084 | chr2_241245260_- | SINE | Alu | Name=AluJb |
| ADediting_857085 | chr2_241245294_- | SINE | Alu | Name=AluJb |
| ADediting_857086 | chr2_241245308_- | SINE | Alu | Name=AluJb |
| ADediting_857087 | chr2_241245312_- | SINE | Alu | Name=AluJb |
| ADediting_857088 | chr2_241245322_- | SINE | Alu | Name=AluJb |
| ADediting_857089 | chr2_241245348_- | SINE | Alu | Name=AluJb |
| ADediting_857090 | chr2_241245356_- | SINE | Alu | Name=AluJb |
| ADediting_857091 | chr2_241245357_- | SINE | Alu | Name=AluJb |
| ADediting_857092 | chr2_241245365_- | SINE | Alu | Name=AluJb |
| ADediting_857093 | chr2_241245369_- | SINE | Alu | Name=AluJb |
| ADediting_857094 | chr2_241245397_- | SINE | Alu | Name=AluJb |
| ADediting_857095 | chr2_241245398_- | SINE | Alu | Name=AluJb |
| ADediting_857096 | chr2_241245583_- | SINE | Alu | Name=AluJr |
| ADediting_857097 | chr2_241245593_- | SINE | Alu | Name=AluJr |
| ADediting_857098 | chr2_241245630_- | SINE | Alu | Name=AluJr |
| ADediting_857099 | chr2_241245633_- | SINE | Alu | Name=AluJr |
| ADediting_857100 | chr2_241245653_- | SINE | Alu | Name=AluJr |
| ADediting_857101 | chr2_241245654_- | SINE | Alu | Name=AluJr |
| ADediting_857102 | chr2_241245690_- | SINE | Alu | Name=AluJr |
| ADediting_857103 | chr2_241245693_- | SINE | Alu | Name=AluJr |
| ADediting_857104 | chr2_241245694_- | SINE | Alu | Name=AluJr |
| ADediting_857105 | chr2_241245702_- | SINE | Alu | Name=AluJr |
| ADediting_857106 | chr2_241245716_- | SINE | Alu | Name=AluJr |
| ADediting_857107 | chr2_241245719_- | SINE | Alu | Name=AluJr |
| ADediting_857108 | chr2_241245720_- | SINE | Alu | Name=AluJr |
| ADediting_857109 | chr2_241245724_- | SINE | Alu | Name=AluJr |
| ADediting_857110 | chr2_241245726_- | SINE | Alu | Name=AluJr |
| ADediting_857111 | chr2_241245740_- | SINE | Alu | Name=AluJr |
| ADediting_857112 | chr2_241245742_- | SINE | Alu | Name=AluJr |
| ADediting_857113 | chr2_241245745_- | SINE | Alu | Name=AluJr |
| ADediting_857114 | chr2_241245756_- | SINE | Alu | Name=AluJr |
| ADediting_857115 | chr2_241245769_- | SINE | Alu | Name=AluJr |
| ADediting_857118 | chr2_241250998_- | SINE | Alu | Name=AluJb |
| ADediting_857119 | chr2_241251003_- | SINE | Alu | Name=AluJb |
| ADediting_857120 | chr2_241251049_- | SINE | Alu | Name=AluJb |
| ADediting_857121 | chr2_241251065_- | SINE | Alu | Name=AluJb |
| ADediting_857122 | chr2_241251070_- | SINE | Alu | Name=AluJb |
| ADediting_857123 | chr2_241251075_- | SINE | Alu | Name=AluJb |
| ADediting_857124 | chr2_241251084_- | SINE | Alu | Name=AluJb |
| ADediting_857125 | chr2_241251158_- | SINE | Alu | Name=AluJb |
| ADediting_857126 | chr2_241251186_- | SINE | Alu | Name=AluJb |
| ADediting_857127 | chr2_241251205_- | SINE | Alu | Name=AluJb |
| ADediting_857128 | chr2_241251209_- | SINE | Alu | Name=AluJb |
| ADediting_857129 | chr2_241251210_- | SINE | Alu | Name=AluJb |
| ADediting_857130 | chr2_241251226_- | SINE | Alu | Name=AluJb |
| ADediting_857131 | chr2_241251231_- | SINE | Alu | Name=AluJb |
| ADediting_857132 | chr2_241251232_- | SINE | Alu | Name=AluJb |
| ADediting_857133 | chr2_241251718_- | SINE | Alu | Name=AluSx |
| ADediting_857134 | chr2_241251730_- | SINE | Alu | Name=AluSx |
| ADediting_857135 | chr2_241251745_- | SINE | Alu | Name=AluSx |
| ADediting_857136 | chr2_241251772_- | SINE | Alu | Name=AluSx |
| ADediting_857137 | chr2_241251792_- | SINE | Alu | Name=AluSx |
| ADediting_857138 | chr2_241251812_- | SINE | Alu | Name=AluSx |
| ADediting_857139 | chr2_241251877_- | SINE | Alu | Name=AluSx |
| ADediting_857140 | chr2_241251894_- | SINE | Alu | Name=AluSx |
| ADediting_857141 | chr2_241251901_- | SINE | Alu | Name=AluSx |
| ADediting_857142 | chr2_241252245_- | SINE | Alu | Name=AluSx |
| ADediting_857143 | chr2_241252258_- | SINE | Alu | Name=AluSx |
| ADediting_857144 | chr2_241252272_- | SINE | Alu | Name=AluSx |
| ADediting_857145 | chr2_241252299_- | SINE | Alu | Name=AluSx |
| ADediting_857146 | chr2_241252310_- | SINE | Alu | Name=AluSx |
| ADediting_857147 | chr2_241252319_- | SINE | Alu | Name=AluSx |
| ADediting_857148 | chr2_241252402_- | SINE | Alu | Name=AluSx |
| ADediting_857149 | chr2_241252415_- | SINE | Alu | Name=AluSx |
| ADediting_857150 | chr2_241252416_- | SINE | Alu | Name=AluSx |
| ADediting_857151 | chr2_241252419_- | SINE | Alu | Name=AluSx |
| ADediting_857152 | chr2_241252439_- | SINE | Alu | Name=AluSx |
| ADediting_857153 | chr2_241252442_- | SINE | Alu | Name=AluSx |
| ADediting_857154 | chr2_241252480_- | SINE | Alu | Name=AluSx |
| ADediting_857155 | chr2_241252488_- | SINE | Alu | Name=AluSx |
| ADediting_857157 | chr2_241252496_- | SINE | Alu | Name=AluSx |
| ADediting_857158 | chr2_241252498_- | SINE | Alu | Name=AluSx |
| ADediting_857159 | chr2_241252500_- | SINE | Alu | Name=AluSx |
| ADediting_857167 | chr2_241254545_- | SINE | Alu | Name=AluY |
| ADediting_857168 | chr2_241254552_- | SINE | Alu | Name=AluY |
| ADediting_857169 | chr2_241254557_- | SINE | Alu | Name=AluY |
| ADediting_857170 | chr2_241254581_- | SINE | Alu | Name=AluY |
| ADediting_857171 | chr2_241254582_- | SINE | Alu | Name=AluY |
| ADediting_857172 | chr2_241254590_- | SINE | Alu | Name=AluY |
| ADediting_857173 | chr2_241254596_- | SINE | Alu | Name=AluY |
| ADediting_857174 | chr2_241254600_- | SINE | Alu | Name=AluY |
| ADediting_857175 | chr2_241254617_- | SINE | Alu | Name=AluY |
| ADediting_857176 | chr2_241254629_- | SINE | Alu | Name=AluY |
| ADediting_857184 | chr2_241257301_- | SINE | Alu | Name=AluSc |
| ADediting_857185 | chr2_241257325_- | SINE | Alu | Name=AluSc |
| ADediting_857186 | chr2_241257397_- | SINE | Alu | Name=AluSc |
| ADediting_857195 | chr2_241277885_- | SINE | Alu | Name=AluSp |
| ADediting_857204 | chr2_241281259_- | SINE | Alu | Name=AluSp |
| ADediting_857206 | chr2_241283760_- | SINE | Alu | Name=AluY |
| ADediting_857207 | chr2_241284954_- | SINE | Alu | Name=AluSx |
| ADediting_857208 | chr2_241284983_- | SINE | Alu | Name=AluSx |
| ADediting_857209 | chr2_241285019_- | SINE | Alu | Name=AluSx |
| ADediting_857210 | chr2_241285778_- | SINE | Alu | Name=AluJr |
| ADediting_857211 | chr2_241285826_- | SINE | Alu | Name=AluJr |
| ADediting_857212 | chr2_241285908_- | SINE | Alu | Name=AluJr |
| ADediting_857213 | chr2_241286191_- | SINE | Alu | Name=AluJr |
| ADediting_857214 | chr2_241287221_- | SINE | Alu | Name=AluSg |
| ADediting_857215 | chr2_241287222_- | SINE | Alu | Name=AluSg |
| ADediting_857216 | chr2_241287226_- | SINE | Alu | Name=AluSg |
| ADediting_857217 | chr2_241287304_- | SINE | Alu | Name=AluSg |
| ADediting_857218 | chr2_241287311_- | SINE | Alu | Name=AluSg |
| ADediting_857219 | chr2_241287346_- | SINE | Alu | Name=AluSg |
| ADediting_857220 | chr2_241287517_- | SINE | Alu | Name=AluSz6 |
| ADediting_857221 | chr2_241287558_- | SINE | Alu | Name=AluSz6 |
| ADediting_857222 | chr2_241287564_- | SINE | Alu | Name=AluSz6 |
| ADediting_857223 | chr2_241287574_- | SINE | Alu | Name=AluSz6 |
| ADediting_857224 | chr2_241287584_- | SINE | Alu | Name=AluSz6 |
| ADediting_857225 | chr2_241287619_- | SINE | Alu | Name=AluSz6 |
| ADediting_857226 | chr2_241287668_- | SINE | Alu | Name=AluSz6 |
| ADediting_857227 | chr2_241294624_- | SINE | Alu | Name=AluJr |
| ADediting_857228 | chr2_241294974_- | SINE | Alu | Name=AluSx1 |
| ADediting_857229 | chr2_241294980_- | SINE | Alu | Name=AluSx1 |
| ADediting_857230 | chr2_241295019_- | SINE | Alu | Name=AluSx1 |
| ADediting_857231 | chr2_241295045_- | SINE | Alu | Name=AluSx1 |
| ADediting_857232 | chr2_241295100_- | SINE | Alu | Name=AluSx1 |
| ADediting_857233 | chr2_241299716_- | SINE | Alu | Name=AluY |
| ADediting_857234 | chr2_241299726_- | SINE | Alu | Name=AluY |
| ADediting_857235 | chr2_241299742_- | SINE | Alu | Name=AluY |
| ADediting_857236 | chr2_241299906_- | SINE | Alu | Name=AluY |
| ADediting_857237 | chr2_241301077_- | SINE | Alu | Name=AluY |
| ADediting_857238 | chr2_241301115_- | SINE | Alu | Name=AluY |
| ADediting_857239 | chr2_241301141_- | SINE | Alu | Name=AluY |
| ADediting_857240 | chr2_241301187_- | SINE | Alu | Name=AluY |
| ADediting_857241 | chr2_241301190_- | SINE | Alu | Name=AluY |
| ADediting_857242 | chr2_241301192_- | SINE | Alu | Name=AluY |
| ADediting_857243 | chr2_241301216_- | SINE | Alu | Name=AluY |
| ADediting_857244 | chr2_241301259_- | SINE | Alu | Name=AluY |
| ADediting_857245 | chr2_241301260_- | SINE | Alu | Name=AluY |
| ADediting_857246 | chr2_241302010_- | SINE | Alu | Name=AluJr |
| ADediting_857247 | chr2_241302013_- | SINE | Alu | Name=AluJr |
| ADediting_857248 | chr2_241302038_- | SINE | Alu | Name=AluJr |
| ADediting_857249 | chr2_241302046_- | SINE | Alu | Name=AluJr |
| ADediting_857250 | chr2_241302529_- | SINE | Alu | Name=AluJo |
| ADediting_857251 | chr2_241304020_- | SINE | Alu | Name=AluJb |
| ADediting_857252 | chr2_241305248_- | SINE | Alu | Name=AluSx |
| ADediting_857253 | chr2_241305262_- | SINE | Alu | Name=AluSx |
| ADediting_857254 | chr2_241305288_- | SINE | Alu | Name=AluSx |
| ADediting_857255 | chr2_241305396_- | SINE | Alu | Name=AluSx |
| ADediting_857256 | chr2_241305850_- | SINE | Alu | Name=AluY |
| ADediting_857257 | chr2_241305872_- | SINE | Alu | Name=AluY |
| ADediting_857258 | chr2_241305899_- | SINE | Alu | Name=AluY |
| ADediting_857259 | chr2_241306039_- | SINE | Alu | Name=AluY |
| ADediting_857260 | chr2_241306347_- | SINE | Alu | Name=AluSp |
| ADediting_857261 | chr2_241306358_- | SINE | Alu | Name=AluSp |
| ADediting_857262 | chr2_241306397_- | SINE | Alu | Name=AluSp |
| ADediting_857263 | chr2_241306466_- | SINE | Alu | Name=AluSp |
| ADediting_857264 | chr2_241306483_- | SINE | Alu | Name=AluSp |
| ADediting_857265 | chr2_241306486_- | SINE | Alu | Name=AluSp |
| ADediting_857266 | chr2_241306491_- | SINE | Alu | Name=AluSp |
| ADediting_857267 | chr2_241306501_- | SINE | Alu | Name=AluSp |
| ADediting_857268 | chr2_241306554_- | SINE | Alu | Name=AluSp |
| ADediting_857269 | chr2_241306642_- | SINE | Alu | Name=AluSz6 |
| ADediting_857270 | chr2_241306689_- | SINE | Alu | Name=AluSz6 |
| ADediting_857271 | chr2_241306690_- | SINE | Alu | Name=AluSz6 |
| ADediting_857272 | chr2_241306691_- | SINE | Alu | Name=AluSz6 |
| ADediting_857273 | chr2_241306716_- | SINE | Alu | Name=AluSz6 |
| ADediting_857274 | chr2_241306782_- | SINE | Alu | Name=AluSz6 |
| ADediting_857275 | chr2_241306799_- | SINE | Alu | Name=AluSz6 |
| ADediting_857276 | chr2_241306800_- | SINE | Alu | Name=AluSz6 |
| ADediting_857277 | chr2_241306838_- | SINE | Alu | Name=AluSz6 |
| ADediting_857278 | chr2_241306841_- | SINE | Alu | Name=AluSz6 |
| ADediting_857279 | chr2_241313551_- | SINE | Alu | Name=AluSz |
| ADediting_1562802 | chr2_241231222_- | SINE | Alu | Name=AluSp |
| ADediting_1562803 | chr2_241232338_- | SINE | Alu | Name=AluSx |
| ADediting_1562804 | chr2_241245281_- | SINE | Alu | Name=AluJb |
| ADediting_1562805 | chr2_241245558_- | SINE | Alu | Name=AluJr |
| ADediting_1562806 | chr2_241245637_- | SINE | Alu | Name=AluJr |
| ADediting_1562807 | chr2_241245680_- | SINE | Alu | Name=AluJr |
| ADediting_1562808 | chr2_241245707_- | SINE | Alu | Name=AluJr |
| ADediting_1562815 | chr2_241250997_- | SINE | Alu | Name=AluJb |
| ADediting_1562816 | chr2_241251061_- | SINE | Alu | Name=AluJb |
| ADediting_1562817 | chr2_241251062_- | SINE | Alu | Name=AluJb |
| ADediting_1562818 | chr2_241251078_- | SINE | Alu | Name=AluJb |
| ADediting_1562819 | chr2_241251088_- | SINE | Alu | Name=AluJb |
| ADediting_1562820 | chr2_241251196_- | SINE | Alu | Name=AluJb |
| ADediting_1562822 | chr2_241251809_- | SINE | Alu | Name=AluSx |
| ADediting_1562823 | chr2_241251914_- | SINE | Alu | Name=AluSx |
| ADediting_1562824 | chr2_241251954_- | SINE | Alu | Name=AluSx |
| ADediting_1562825 | chr2_241252285_- | SINE | Alu | Name=AluSx |
| ADediting_1562826 | chr2_241252298_- | SINE | Alu | Name=AluSx |
| ADediting_1562827 | chr2_241252445_- | SINE | Alu | Name=AluSx |
| ADediting_1562828 | chr2_241252476_- | SINE | Alu | Name=AluSx |
| ADediting_1562832 | chr2_241287717_- | SINE | Alu | Name=AluSz6 |
| ADediting_1636549 | chr2_241262327_- | SINE | Alu | Name=FAM |
| ADediting_1636550 | chr2_241286833_- | SINE | Alu | Name=AluJr |
| ADediting_1636551 | chr2_241286834_- | SINE | Alu | Name=AluJr |
| ADediting_1636552 | chr2_241292917_- | SINE | Alu | Name=AluJb |
| ADediting_1636553 | chr2_241292924_- | SINE | Alu | Name=AluJb |
| ADediting_1636554 | chr2_241303990_- | SINE | Alu | Name=AluJb |
| ADediting_1636555 | chr2_241304039_- | SINE | Alu | Name=AluJb |
Top |
RNA A-to-I editing events in the alternative splicing sites for HDLBP |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for HDLBP |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
Top |
Protein coding region RNA A-to-I editings for HDLBP |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
Top |
The effects of the RNA editing to the miRNA binding sites for HDLBP |
| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000115677.17 | ENST00000310931.9 | HDLBP-201 | hsa-miR-5688 | chr2 | 241229537 | 241229543 | 7mer-m8 | 241229536 | 241229557 | 146 | -11.27 |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000115677.17 | ENST00000373292.8 | HDLBP-202 | hsa-miR-5688 | chr2 | 241229537 | 241229543 | 7mer-m8 | 241229536 | 241229557 | 146 | -11.27 |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000115677.17 | ENST00000391975.5 | HDLBP-203 | hsa-miR-5688 | chr2 | 241229537 | 241229543 | 7mer-m8 | 241229536 | 241229557 | 146 | -11.27 |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000115677.17 | ENST00000391976.6 | HDLBP-204 | hsa-miR-5688 | chr2 | 241229537 | 241229543 | 7mer-m8 | 241229536 | 241229557 | 146 | -11.27 |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000115677.17 | ENST00000427183.6 | HDLBP-214 | hsa-miR-5688 | chr2 | 241229537 | 241229543 | 7mer-m8 | 241229536 | 241229557 | 146 | -11.27 |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000115677.17 | ENST00000442730.1 | HDLBP-220 | hsa-miR-5688 | chr2 | 241229537 | 241229543 | 7mer-m8 | 241229536 | 241229557 | 146 | -11.27 |
| ADediting_1535951 | chr14_100874558_+ | ENSG00000115677.17 | ENST00000310931.9 | HDLBP-201 | hsa-miR-337-3p | chr2 | 241227969 | 241227976 | 8mer-1a | 241227969 | 241227992 | 153 | -15.42 |
| ADediting_1535951 | chr14_100874558_+ | ENSG00000115677.17 | ENST00000391975.5 | HDLBP-203 | hsa-miR-337-3p | chr2 | 241227969 | 241227976 | 8mer-1a | 241227969 | 241227992 | 153 | -15.42 |
| ADediting_1535951 | chr14_100874558_+ | ENSG00000115677.17 | ENST00000427183.6 | HDLBP-214 | hsa-miR-337-3p | chr2 | 241227969 | 241227976 | 8mer-1a | 241227969 | 241227992 | 153 | -15.42 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1556067 | chr19_40282625_- | ENSG00000115677.17 | ENST00000310931.9 | HDLBP-201 | hsa-miR-641 | chr2 | 241227434 | 241227440 | 7mer-m8 | 241227433 | 241227456 | 149 | -11.79 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000115677.17 | ENST00000310931.9 | HDLBP-201 | hsa-miR-641 | chr2 | 241227616 | 241227623 | 8mer-1a | 241227616 | 241227640 | 147 | -13.73 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000115677.17 | ENST00000391975.5 | HDLBP-203 | hsa-miR-641 | chr2 | 241227434 | 241227440 | 7mer-m8 | 241227433 | 241227456 | 149 | -11.79 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000115677.17 | ENST00000391975.5 | HDLBP-203 | hsa-miR-641 | chr2 | 241227616 | 241227623 | 8mer-1a | 241227616 | 241227640 | 147 | -13.73 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000115677.17 | ENST00000427183.6 | HDLBP-214 | hsa-miR-641 | chr2 | 241227434 | 241227440 | 7mer-m8 | 241227433 | 241227456 | 149 | -11.79 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000115677.17 | ENST00000427183.6 | HDLBP-214 | hsa-miR-641 | chr2 | 241227616 | 241227623 | 8mer-1a | 241227616 | 241227640 | 147 | -13.73 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000115677.17 | ENST00000310931.9 | HDLBP-201 | hsa-miR-641 | chr2 | 241227434 | 241227440 | 7mer-m8 | 241227433 | 241227456 | 149 | -11.79 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000115677.17 | ENST00000310931.9 | HDLBP-201 | hsa-miR-641 | chr2 | 241227616 | 241227623 | 8mer-1a | 241227616 | 241227640 | 147 | -13.73 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000115677.17 | ENST00000391975.5 | HDLBP-203 | hsa-miR-641 | chr2 | 241227434 | 241227440 | 7mer-m8 | 241227433 | 241227456 | 149 | -11.79 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000115677.17 | ENST00000391975.5 | HDLBP-203 | hsa-miR-641 | chr2 | 241227616 | 241227623 | 8mer-1a | 241227616 | 241227640 | 147 | -13.73 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000115677.17 | ENST00000427183.6 | HDLBP-214 | hsa-miR-641 | chr2 | 241227434 | 241227440 | 7mer-m8 | 241227433 | 241227456 | 149 | -11.79 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000115677.17 | ENST00000427183.6 | HDLBP-214 | hsa-miR-641 | chr2 | 241227616 | 241227623 | 8mer-1a | 241227616 | 241227640 | 147 | -13.73 |
| ADediting_496066 | chr15_66496985_- | ENSG00000115677.17 | ENST00000310931.9 | HDLBP-201 | hsa-miR-4512 | chr2 | 241227879 | 241227885 | 7mer-m8 | 241227878 | 241227899 | 152 | -21.46 |
| ADediting_496066 | chr15_66496985_- | ENSG00000115677.17 | ENST00000391975.5 | HDLBP-203 | hsa-miR-4512 | chr2 | 241227879 | 241227885 | 7mer-m8 | 241227878 | 241227899 | 152 | -21.46 |
| ADediting_496066 | chr15_66496985_- | ENSG00000115677.17 | ENST00000427183.6 | HDLBP-214 | hsa-miR-4512 | chr2 | 241227879 | 241227885 | 7mer-m8 | 241227878 | 241227899 | 152 | -21.46 |
| Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for HDLBP |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for HDLBP |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| CER | ADediting_1562808 | chr2_241245707_- | 9.03388249423453e-05 | 0.314168280739846 | 2.30224400376549e-10 | 0.488363424686603 | 0.00663631376300053 | 0.220748745341729 |
| CER | ADediting_1562816 | chr2_241251061_- | 1.27152657639328e-05 | 0.348097476350825 | 5.76374790981236e-07 | 0.394765079660263 | 0.0421283924074819 | 0.166167130381052 |
| CER | ADediting_1562826 | chr2_241252298_- | 6.24328305592972e-05 | 0.320875853348317 | 3.82219487773656e-08 | 0.430514604997456 | 0.00794882178595338 | 0.215960505476482 |
| DLPFC | ADediting_857075 | chr2_241232413_- | 0.532894175104381 | 0.0355501825999096 | 0.236811004361782 | -0.067385444468943 | 8.17205663621289e-15 | 0.421954793904808 |
| DLPFC | ADediting_857081 | chr2_241232751_- | 0.167577589117684 | 0.0785765972869409 | 0.367957266093647 | -0.0513075453028821 | 1.75276618686412e-18 | 0.470514750826292 |
| CER | ADediting_857084 | chr2_241245260_- | 0.000780029018551243 | 0.271427429226293 | 1.32227518720114e-07 | 0.414676287247564 | 0.00326655338925133 | 0.238685708327943 |
| CER | ADediting_857085 | chr2_241245294_- | 3.57605336869778e-05 | 0.330702896962276 | 1.6296881139215e-09 | 0.467469897251469 | 0.000640303308005627 | 0.275633207614976 |
| CER | ADediting_857086 | chr2_241245308_- | 4.44757910352489e-06 | 0.364771827701424 | 1.78927144934566e-09 | 0.466436534469386 | 0.00094685732297913 | 0.267231632758042 |
| CER | ADediting_857087 | chr2_241245312_- | 0.000288267492461384 | 0.291995287329786 | 1.86494784155544e-05 | 0.341774929941727 | 0.010491056675747 | 0.208402377990995 |
| CER | ADediting_857088 | chr2_241245322_- | 1.16214755321799e-07 | 0.416362004220244 | 4.31227256003879e-10 | 0.481815416422631 | 0.000657825092221343 | 0.275061895020806 |
| CER | ADediting_857096 | chr2_241245583_- | 0.000279250320736043 | 0.292626866411197 | 2.73726870782031e-05 | 0.33530014773112 | 0.784744209894078 | 0.0224872307668883 |
| CER | ADediting_857098 | chr2_241245630_- | 4.2234419538342e-07 | 0.399079635359179 | 1.51473876354151e-08 | 0.441819623768083 | 0.00341846362164757 | 0.237574024354402 |
| CER | ADediting_857099 | chr2_241245633_- | 1.78279222810581e-06 | 0.37856042928228 | 1.94095248597987e-08 | 0.438831563837293 | 0.0159791050093387 | 0.196448545075112 |
| CER | ADediting_857101 | chr2_241245654_- | 1.72448772464711e-05 | 0.343078663852459 | 7.44011781762195e-05 | 0.317711718075565 | 0.137025131299924 | 0.121976421870747 |
| DLPFC | ADediting_857102 | chr2_241245690_- | 0.0844085316591653 | 0.0981706331085335 | 0.885083706890283 | -0.00824178275684357 | 1.14150416384938e-15 | 0.433983490018069 |
| CER | ADediting_857102 | chr2_241245690_- | 1.59881023023126e-08 | 0.44117107638174 | 4.76851939210584e-14 | 0.56540535774611 | 0.0110867056407767 | 0.206868563920488 |
| CER | ADediting_857103 | chr2_241245693_- | 1.85202132732157e-08 | 0.439399017888458 | 3.40423246766117e-14 | 0.568095738857158 | 0.0194151519224484 | 0.1906934516196 |
| DLPFC | ADediting_857104 | chr2_241245694_- | 0.0721745564017288 | 0.10226565317297 | 0.708472461317568 | -0.0213202850967193 | 6.33887963287213e-15 | 0.423534274918986 |
| CER | ADediting_857104 | chr2_241245694_- | 9.07642471438028e-10 | 0.473867049392335 | 5.3684353407617e-14 | 0.564453559427262 | 0.0312364829888135 | 0.17597443949512 |
| CER | ADediting_857105 | chr2_241245702_- | 2.40354055696704e-05 | 0.337510183724057 | 8.87395067225769e-10 | 0.474111011816648 | 0.0162238611641807 | 0.196004674208275 |
| CER | ADediting_857106 | chr2_241245716_- | 2.11907865562436e-08 | 0.437766445549383 | 6.04834021044337e-15 | 0.581517114723619 | 0.00371053734101564 | 0.235556246963844 |
| CER | ADediting_857107 | chr2_241245719_- | 8.00286301492101e-09 | 0.44937921025145 | 5.88279797579307e-13 | 0.544545894264461 | 0.00391478710645748 | 0.234228491864027 |
| CER | ADediting_857108 | chr2_241245720_- | 1.06065340816263e-05 | 0.351043916012093 | 2.92492304691397e-08 | 0.433825148219399 | 0.0346638231213095 | 0.172612876316792 |
| DLPFC | ADediting_857110 | chr2_241245726_- | 0.119391309167302 | 0.088634499846705 | 0.737260235455056 | -0.0191297296900749 | 8.75069784220287e-12 | 0.374952892595151 |
| CER | ADediting_857110 | chr2_241245726_- | 6.39734129319681e-09 | 0.451989208906357 | 6.54534787742912e-16 | 0.597930526738537 | 0.0106557058347923 | 0.207970889799308 |
| DLPFC | ADediting_857112 | chr2_241245742_- | 0.0436334740376907 | 0.114676654426609 | 0.52382695521947 | -0.0363399909442712 | 1.95892191597647e-09 | 0.332443933468818 |
| CER | ADediting_857112 | chr2_241245742_- | 4.23783718581777e-08 | 0.429227807383247 | 1.07337526661728e-12 | 0.539331543410818 | 0.00273110124524388 | 0.243016477116396 |
| CER | ADediting_857118 | chr2_241250998_- | 1.74363276347872e-08 | 0.440127143979367 | 1.91702592346498e-11 | 0.513017348465721 | 0.000457088363090414 | 0.282665270053455 |
| CER | ADediting_857120 | chr2_241251049_- | 0.000254198452147875 | 0.294486349478193 | 8.18376034285643e-09 | 0.449117460123527 | 0.0120789395074491 | 0.204467429083572 |
| CER | ADediting_857121 | chr2_241251065_- | 1.62754147448919e-06 | 0.379900602853681 | 9.47869155662866e-10 | 0.47339755971922 | 0.0279682069663104 | 0.179485712272035 |
| DLPFC | ADediting_857122 | chr2_241251070_- | 0.000650843219009721 | 0.192607863318746 | 0.590778988819241 | 0.0306563999967815 | 1.46422019906956e-21 | 0.50602800005552 |
| CER | ADediting_857122 | chr2_241251070_- | 2.29003506921722e-07 | 0.407398924786861 | 6.9093378263864e-11 | 0.500546903161438 | 0.000919024929176627 | 0.26788188147205 |
| TCX | ADediting_857122 | chr2_241251070_- | 0.238878329450161 | 0.0967501360586378 | 0.116468506130018 | -0.128714231915406 | 7.53540195728418e-06 | 0.356519828323617 |
| CER | ADediting_857123 | chr2_241251075_- | 9.21099456677137e-07 | 0.388142078019666 | 3.22548150758835e-11 | 0.508017195771858 | 0.000221981618617386 | 0.297145408720903 |
| CER | ADediting_857124 | chr2_241251084_- | 0.000308790268303534 | 0.290623515703724 | 8.71904944813202e-09 | 0.448374320526542 | 0.000491484423538788 | 0.28116710503901 |
| DLPFC | ADediting_857125 | chr2_241251158_- | 0.084592396450135 | 0.0981128577485249 | 0.660721283506705 | -0.0250260355940809 | 4.23255107816274e-08 | 0.305072547267754 |
| CER | ADediting_857125 | chr2_241251158_- | 9.60634261281761e-06 | 0.352640934588484 | 1.27737284335916e-10 | 0.494386349408876 | 7.98462157991546e-05 | 0.316427401602467 |
| CER | ADediting_857126 | chr2_241251186_- | 0.000686123139437762 | 0.27416813603144 | 3.66761842787523e-06 | 0.367733387515343 | 0.00241935861211236 | 0.245906411146178 |
| CER | ADediting_857127 | chr2_241251205_- | 8.73047774582109e-06 | 0.354174276769194 | 4.84919946077308e-09 | 0.455188684503109 | 0.00242198983602826 | 0.245880640352735 |
| CER | ADediting_857132 | chr2_241251232_- | 0.000629079368478546 | 0.27600678495344 | 8.27968701360315e-07 | 0.389660668248143 | 4.04113708780738e-06 | 0.366247449860042 |
| CER | ADediting_857133 | chr2_241251718_- | 0.00970538883498712 | 0.21054731929889 | 2.42594145802e-05 | 0.33735305359174 | 0.114403396091731 | 0.129440782167985 |
| CER | ADediting_857135 | chr2_241251745_- | 0.0132135468475418 | 0.201925258704935 | 8.9885656656147e-05 | 0.314260652394502 | 0.140656240767482 | 0.120868280774 |
| CER | ADediting_857136 | chr2_241251772_- | 8.2437935419999e-05 | 0.31584464262752 | 8.96084924597917e-07 | 0.38853505743035 | 0.00659639846794231 | 0.220907158075597 |
| DLPFC | ADediting_857138 | chr2_241251812_- | 0.859754875643961 | 0.0100755502894296 | 0.166247176287466 | -0.0788226064538731 | 3.40071928676398e-10 | 0.346906522461461 |
| CER | ADediting_857138 | chr2_241251812_- | 0.000625783744432337 | 0.276117642200071 | 3.27329152003835e-05 | 0.332232490321012 | 0.00586536994782003 | 0.223970707700992 |
| CER | ADediting_857144 | chr2_241252272_- | 7.46160172997745e-07 | 0.391135534617135 | 9.84601013763595e-11 | 0.497011106355824 | 0.0108199789928855 | 0.207546196214623 |
| DLPFC | ADediting_857145 | chr2_241252299_- | 0.236484484580593 | 0.067432289885855 | 0.2240951494767 | -0.0692445528675615 | 8.59442747256381e-13 | 0.391428210717188 |
| CER | ADediting_857145 | chr2_241252299_- | 8.58773030308587e-07 | 0.389141102507697 | 3.66412898659248e-10 | 0.483528130948552 | 0.00738930696241455 | 0.217908758783859 |
| TCX | ADediting_857145 | chr2_241252299_- | 0.105344315755336 | 0.132754485315032 | 0.179871003770499 | -0.110092429288965 | 1.8243639362409e-09 | 0.466221256410871 |
| CER | ADediting_857146 | chr2_241252310_- | 2.93994185665273e-06 | 0.371094426355303 | 3.56074950155692e-10 | 0.483828107638401 | 0.00106042373516862 | 0.264748039284823 |
| TCX | ADediting_857146 | chr2_241252310_- | 0.392287540373752 | 0.0703512674512501 | 0.133468400783241 | -0.123083819534292 | 1.91176302720481e-05 | 0.341360916881906 |
| CER | ADediting_857147 | chr2_241252319_- | 6.09217590595165e-05 | 0.321315098081698 | 2.83733380352033e-08 | 0.434199105804337 | 0.0398018756570432 | 0.168065353284933 |
| CER | ADediting_857149 | chr2_241252415_- | 7.3657872897234e-05 | 0.317893822955675 | 1.15379172017981e-08 | 0.445067167100957 | 0.0151152255116103 | 0.198064043096727 |
| CER | ADediting_857150 | chr2_241252416_- | 7.94169443495235e-05 | 0.316525629673369 | 3.40004263555664e-07 | 0.402053118804184 | 0.0095561217252191 | 0.210972053702899 |
| DLPFC | ADediting_857152 | chr2_241252439_- | 0.20215792622548 | 0.0726371342968596 | 0.291390175782211 | -0.0601129737458896 | 2.91769475774683e-13 | 0.398795150448609 |
| CER | ADediting_857152 | chr2_241252439_- | 0.00846334289174972 | 0.214273417634818 | 4.78263392484985e-06 | 0.363648584047962 | 0.000710061960539139 | 0.273438155075785 |
| TCX | ADediting_857152 | chr2_241252439_- | 0.236501983838273 | 0.0972390686099636 | 0.128616494084825 | -0.124631534014121 | 1.93459155272431e-06 | 0.377353357864463 |
| DLPFC | ADediting_857153 | chr2_241252442_- | 0.338592088989966 | 0.0545309942816023 | 0.281442791147092 | -0.0613644834572512 | 5.46848850343525e-12 | 0.378366169089512 |
| CER | ADediting_857153 | chr2_241252442_- | 0.000655771261315702 | 0.275128132212258 | 5.3432352767148e-07 | 0.39582191343207 | 0.0342189006483836 | 0.173032912494632 |
| TCX | ADediting_857153 | chr2_241252442_- | 0.361928580649559 | 0.0749619847094738 | 0.316387179883346 | -0.0823554697805433 | 3.10322919074388e-05 | 0.333151090440963 |
| DLPFC | ADediting_857155 | chr2_241252488_- | 0.180315309201451 | 0.0762919210873355 | 0.546304604832016 | -0.0343943290201053 | 4.03384970468615e-14 | 0.41183293694791 |
| CER | ADediting_857155 | chr2_241252488_- | 0.000419809555397683 | 0.284411463063475 | 1.16947937635815e-08 | 0.444906835222962 | 0.0105956434218401 | 0.208127608062557 |
| TCX | ADediting_857155 | chr2_241252488_- | 0.443708349598026 | 0.0630041317649764 | 0.61456907289433 | -0.0414447112092311 | 1.96398691259924e-05 | 0.340910201444126 |
| DLPFC | ADediting_857170 | chr2_241254581_- | 0.98445525586627 | -0.00111108686104061 | 0.174926182332018 | -0.0772434031064318 | 5.58194833182084e-10 | 0.342888421764967 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 5.38272254467529e-62 | 0.769734924774263 | 2.06578388208007e-83 | 0.839038590633255 | 0.0120599474461356 | 0.142428073040672 |
| AC | 1.27581021665489e-93 | 0.904229040651994 | 2.03820099437942e-57 | 0.801958672437571 | 6.61627047437069e-16 | 0.481373345471391 |
| PCC | 4.40961019512448e-41 | 0.784510796097603 | 3.24934819882926e-41 | 0.785298446058675 | 0.00217524288643165 | 0.22050117827525 |
| CER | 5.6990004439471e-41 | 0.839106551208155 | 4.71884849978167e-44 | 0.855038548009039 | 1.77853340031828e-08 | 0.439888052155728 |
| TCX | 1.47701650500792e-33 | 0.792218379278004 | 9.51020732113766e-08 | 0.418962037151008 | 9.42979581193195e-10 | 0.473453588575493 |
| FP | 1.59893194829363e-51 | 0.85274896211006 | 9.52295275882994e-28 | 0.702060651066818 | 3.49834527700346e-09 | 0.424565045600042 |
| IFG | 4.78241993511966e-09 | 0.883760173430923 | 3.4301957426888e-06 | 0.784655005037038 | 0.0521290129412467 | 0.392749989864418 |
| PG | 1.57076095452472e-65 | 0.892495752113455 | 3.32593930683279e-29 | 0.704455683934473 | 0.115624716686378 | 0.115759948818551 |
| STG | 5.79299674639596e-19 | 0.788107472412825 | 6.95931155979525e-08 | 0.547731733352886 | 0.0528629158404664 | 0.21200792011685 |
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Relation with AD stages for HDLBP |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| CER | ADediting_857085 | chr2_241245294_- | 0.00141858180905151 | 0.303301949022461 |
| CER | ADediting_857086 | chr2_241245308_- | 0.000262911085547189 | 0.344361472324339 |
| CER | ADediting_857088 | chr2_241245322_- | 0.00020600068795281 | 0.349858733415372 |
| CER | ADediting_857098 | chr2_241245630_- | 0.00131724063727034 | 0.30523430774608 |
| CER | ADediting_857099 | chr2_241245633_- | 0.000263202712389871 | 0.344336257901238 |
| CER | ADediting_857102 | chr2_241245690_- | 0.000119574028222678 | 0.36176762323361 |
| CER | ADediting_857103 | chr2_241245693_- | 0.000257213327713456 | 0.344859365580302 |
| CER | ADediting_857104 | chr2_241245694_- | 0.000333538659240295 | 0.338900328753221 |
| CER | ADediting_857105 | chr2_241245702_- | 1.43889852291039e-05 | 0.404160431593021 |
| CER | ADediting_857106 | chr2_241245716_- | 6.70396838334584e-05 | 0.373944301253466 |
| CER | ADediting_857107 | chr2_241245719_- | 1.77588658045544e-05 | 0.400198414603211 |
| CER | ADediting_857110 | chr2_241245726_- | 3.60492902350825e-06 | 0.429040434115852 |
| CER | ADediting_857112 | chr2_241245742_- | 0.00036695470439291 | 0.336680521622576 |
| CER | ADediting_857118 | chr2_241250998_- | 1.05297806818411e-06 | 0.449617694142212 |
| CER | ADediting_857120 | chr2_241251049_- | 0.000230640897658756 | 0.347325102952853 |
| CER | ADediting_857122 | chr2_241251070_- | 3.98169407927894e-05 | 0.384508568213312 |
| CER | ADediting_857123 | chr2_241251075_- | 0.00124871074977096 | 0.30661920956048 |
| CER | ADediting_857124 | chr2_241251084_- | 0.000518913785614628 | 0.328482430684291 |
| CER | ADediting_857125 | chr2_241251158_- | 1.66363159456349e-05 | 0.401433288769289 |
| CER | ADediting_857127 | chr2_241251205_- | 6.53486080369824e-05 | 0.374470910152378 |
| CER | ADediting_857132 | chr2_241251232_- | 0.000251096254323935 | 0.345405377795665 |
| CER | ADediting_857136 | chr2_241251772_- | 0.00141512011677679 | 0.303365854849265 |
| CER | ADediting_857144 | chr2_241252272_- | 0.000215866448549131 | 0.348812270406127 |
| CER | ADediting_857145 | chr2_241252299_- | 0.000455812120816336 | 0.331576712166507 |
| CER | ADediting_857146 | chr2_241252310_- | 0.00124064749189297 | 0.306786679760974 |
| CER | ADediting_857149 | chr2_241252415_- | 0.000161335816706696 | 0.355267408154724 |
| CER | ADediting_857150 | chr2_241252416_- | 0.00104963154924338 | 0.311075568044782 |
| CER | ADediting_1562808 | chr2_241245707_- | 0.000452619746546213 | 0.331743523017115 |
| CER | ADediting_1562826 | chr2_241252298_- | 3.1264443477023e-05 | 0.389291457463458 |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| CER | 8.53063449087071e-10 | 0.547722159819233 |
| TCX | 7.26825352188771e-06 | 0.420314527629206 |
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RelatedDrugs for HDLBP |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for HDLBP |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
| HDLBP | C0004352 | Autistic Disorder | 1 | CTD_human |
| HDLBP | C0027671 | Neoplastic Processes | 1 | CTD_human |
| HDLBP | C2931817 | Chromosome 2q37 deletion syndrome | 1 | CTD_human |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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