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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited versus non-edited samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with AD stages

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene


Gene summary for ZDHHC8

check button Gene summary
Gene informationGene symbol

ZDHHC8

Gene ID

29801

Gene namezinc finger DHHC-type palmitoyltransferase 8
SynonymsDHHC8|ZDHHCL1|ZNF378
Cytomap

22q11.21

Type of geneprotein-coding
Descriptionprobable palmitoyltransferase ZDHHC8membrane-associated DHHC8 zinc finger proteinzinc finger DHHC-type containing 8zinc finger protein 378zinc finger, DHHC domain like containing 1
Modification date20200313
UniProtAcc

Q9ULC8,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
ZDHHC8

GO:0018345

protein palmitoylation

23034182


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RNA A-to-I events for ZDHHC8

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_969537(20133473, +), ADediting_969538(20133474, +), ADediting_969539(20133495, +), ADediting_969540(20133496, +), ADediting_969541(20133543, +), ADediting_969542(20133552, +), ADediting_969543(20133582, +), ADediting_969544(20133586, +), ADediting_969545(20133609, +), ADediting_969546(20133614, +), ADediting_969547(20133618, +), ADediting_969548(20133620, +), ADediting_969549(20133622, +), ADediting_969550(20133625, +), ADediting_969551(20133627, +), ADediting_969552(20133632, +), ADediting_969553(20133635, +), ADediting_969554(20133639, +), ADediting_969555(20133673, +), ADediting_969556(20133674, +), ADediting_969557(20133692, +), ADediting_969558(20134955, +), ADediting_969559(20134963, +), ADediting_969560(20134971, +), ADediting_969561(20134975, +), ADediting_969562(20134980, +), ADediting_969563(20134982, +), ADediting_969564(20135032, +), ADediting_969565(20135044, +), ADediting_969566(20135049, +), ADediting_969567(20135058, +), ADediting_969568(20135061, +), ADediting_969569(20135071, +), ADediting_969570(20135073, +), ADediting_969571(20135089, +), ADediting_969572(20135131, +), ADediting_969573(20135134, +), ADediting_969574(20135179, +), ADediting_969575(20135197, +), ADediting_969576(20135206, +), ADediting_969577(20135219, +), ADediting_969578(20135324, +), ADediting_1569748(20133542, +), ADediting_1569749(20135174, +),

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RNA editing positional annotations for ZDHHC8 using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_969537chr22_20133473_+intronic
ADediting_969538chr22_20133474_+intronic
ADediting_969539chr22_20133495_+intronic
ADediting_969540chr22_20133496_+intronic
ADediting_969541chr22_20133543_+intronic
ADediting_969542chr22_20133552_+intronic
ADediting_969543chr22_20133582_+intronic
ADediting_969544chr22_20133586_+intronic
ADediting_969545chr22_20133609_+intronic
ADediting_969546chr22_20133614_+intronic
ADediting_969547chr22_20133618_+intronic
ADediting_969548chr22_20133620_+intronic
ADediting_969549chr22_20133622_+intronic
ADediting_969550chr22_20133625_+intronic
ADediting_969551chr22_20133627_+intronic
ADediting_969552chr22_20133632_+intronic
ADediting_969553chr22_20133635_+intronic
ADediting_969554chr22_20133639_+intronic
ADediting_969555chr22_20133673_+intronic
ADediting_969556chr22_20133674_+intronic
ADediting_969557chr22_20133692_+intronic
ADediting_969558chr22_20134955_+intronic
ADediting_969559chr22_20134963_+intronic
ADediting_969560chr22_20134971_+intronic
ADediting_969561chr22_20134975_+intronic
ADediting_969562chr22_20134980_+intronic
ADediting_969563chr22_20134982_+intronic
ADediting_969564chr22_20135032_+intronic
ADediting_969565chr22_20135044_+intronic
ADediting_969566chr22_20135049_+intronic
ADediting_969567chr22_20135058_+intronic
ADediting_969568chr22_20135061_+intronic
ADediting_969569chr22_20135071_+intronic
ADediting_969570chr22_20135073_+intronic
ADediting_969571chr22_20135089_+intronic
ADediting_969572chr22_20135131_+intronic
ADediting_969573chr22_20135134_+intronic
ADediting_969574chr22_20135179_+intronic
ADediting_969575chr22_20135197_+intronic
ADediting_969576chr22_20135206_+intronic
ADediting_969577chr22_20135219_+intronic
ADediting_969578chr22_20135324_+intronic
ADediting_1569748chr22_20133542_+intronic
ADediting_1569749chr22_20135174_+intronic

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_969537chr22_20133473_+SINEAluName=AluSx1
ADediting_969538chr22_20133474_+SINEAluName=AluSx1
ADediting_969539chr22_20133495_+SINEAluName=AluSx1
ADediting_969540chr22_20133496_+SINEAluName=AluSx1
ADediting_969541chr22_20133543_+SINEAluName=AluSx1
ADediting_969542chr22_20133552_+SINEAluName=AluSx1
ADediting_969543chr22_20133582_+SINEAluName=AluSx1
ADediting_969544chr22_20133586_+SINEAluName=AluSx1
ADediting_969545chr22_20133609_+SINEAluName=AluSx1
ADediting_969546chr22_20133614_+SINEAluName=AluSx1
ADediting_969547chr22_20133618_+SINEAluName=AluSx1
ADediting_969548chr22_20133620_+SINEAluName=AluSx1
ADediting_969549chr22_20133622_+SINEAluName=AluSx1
ADediting_969550chr22_20133625_+SINEAluName=AluSx1
ADediting_969551chr22_20133627_+SINEAluName=AluSx1
ADediting_969552chr22_20133632_+SINEAluName=AluSx1
ADediting_969553chr22_20133635_+SINEAluName=AluSx1
ADediting_969554chr22_20133639_+SINEAluName=AluSx1
ADediting_969555chr22_20133673_+SINEAluName=AluSx1
ADediting_969556chr22_20133674_+SINEAluName=AluSx1
ADediting_969557chr22_20133692_+SINEAluName=AluSx1
ADediting_969558chr22_20134955_+SINEAluName=AluJb
ADediting_969559chr22_20134963_+SINEAluName=AluJb
ADediting_969560chr22_20134971_+SINEAluName=AluJb
ADediting_969561chr22_20134975_+SINEAluName=AluJb
ADediting_969562chr22_20134980_+SINEAluName=AluJb
ADediting_969563chr22_20134982_+SINEAluName=AluJb
ADediting_969564chr22_20135032_+SINEAluName=AluJb
ADediting_969565chr22_20135044_+SINEAluName=AluJb
ADediting_969566chr22_20135049_+SINEAluName=AluJb
ADediting_969567chr22_20135058_+SINEAluName=AluJb
ADediting_969568chr22_20135061_+SINEAluName=AluJb
ADediting_969569chr22_20135071_+SINEAluName=AluJb
ADediting_969570chr22_20135073_+SINEAluName=AluJb
ADediting_969571chr22_20135089_+SINEAluName=AluJb
ADediting_969572chr22_20135131_+SINEAluName=AluJb
ADediting_969573chr22_20135134_+SINEAluName=AluJb
ADediting_969574chr22_20135179_+SINEAluName=AluJb
ADediting_969575chr22_20135197_+SINEAluName=AluJb
ADediting_969576chr22_20135206_+SINEAluName=AluJb
ADediting_969577chr22_20135219_+SINEAluName=AluJb
ADediting_1569748chr22_20133542_+SINEAluName=AluSx1
ADediting_1569749chr22_20135174_+SINEAluName=AluJb

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RNA A-to-I editing events in the alternative splicing sites for ZDHHC8

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ZDHHC8

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
boxplot
boxplot
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
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check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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ADeditome IDChrPositoingSkipped exonENSGENSTs

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Protein coding region RNA A-to-I editings for ZDHHC8

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for ZDHHC8


check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1337757chr7_5495852_-ENSG00000099904.15ENST00000320602.11ZDHHC8-201hsa-miR-589-3pchr2220145952201459587mer-m82014593820145959145-23.62
ADediting_1337757chr7_5495852_-ENSG00000099904.15ENST00000334554.11ZDHHC8-202hsa-miR-589-3pchr2220145952201459587mer-m82014593820145959145-23.62
ADediting_286380chr11_79422188_-ENSG00000099904.15ENST00000334554.11ZDHHC8-202hsa-miR-5579-3pchr2220147523201475297mer-m82014750920147530140-9.67
ADediting_286380chr11_79422188_-ENSG00000099904.15ENST00000405930.3ZDHHC8-203hsa-miR-5579-3pchr2220147523201475297mer-m82014750920147530140-9.67
ADediting_527135chr16_24203190_+ENSG00000099904.15ENST00000320602.11ZDHHC8-201hsa-miR-1273h-3pchr2220146265201462717mer-m82014625120146272150-20.33
ADediting_527135chr16_24203190_+ENSG00000099904.15ENST00000334554.11ZDHHC8-202hsa-miR-1273h-3pchr2220146265201462717mer-m82014625120146272150-20.33

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_291761chr11_93733708_-ENSG00000099904.15ENST00000320602.11ZDHHC8-201hsa-miR-1304-3pchr2220145663201456697mer-m82014564520145670149-20.44
ADediting_291761chr11_93733708_-ENSG00000099904.15ENST00000334554.11ZDHHC8-202hsa-miR-1304-3pchr2220145663201456697mer-m82014564520145670149-20.44
ADediting_496066chr15_66496985_-ENSG00000099904.15ENST00000320602.11ZDHHC8-201hsa-miR-4512chr2220146219201462257mer-m82014620520146226142-14.25
ADediting_496066chr15_66496985_-ENSG00000099904.15ENST00000334554.11ZDHHC8-202hsa-miR-4512chr2220146219201462257mer-m82014620520146226142-14.25

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for ZDHHC8

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for ZDHHC8

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
CERADediting_969537chr22_20133473_+0.0005841657596167250.2775658720349797.4575035139497e-100.4759851227168250.0001653929781890670.302832605981698
CERADediting_969539chr22_20133495_+0.01103277386016950.2070044149730452.27908932329342e-050.3384090880503610.02005281438214360.18972401808039
CERADediting_969541chr22_20133543_+0.009194681041796970.2120253002517861.373061628366e-060.3823857953024130.0006637375143439810.27487227326028
CERADediting_969542chr22_20133552_+0.008787666956815160.2132560649638676.13572973604394e-060.3597631521593590.0006523815783966280.275237870149068
CERADediting_969545chr22_20133609_+0.2975440251074230.08561556888380990.0007878593157478320.2712128213419141.3408746375653e-050.347228980051202
CERADediting_969546chr22_20133614_+0.03441010671462780.1728518387568988.31944019404003e-060.354944727787750.0003007618635625730.291149783507411
CERADediting_969549chr22_20133622_+0.2219874197774860.100302899484120.000119876744875760.3089226376290860.01735924498623970.194018811842336
CERADediting_969550chr22_20133625_+0.05644842716555020.1561010922481231.03992543994161e-050.3513628305533330.0006299900877912820.27597624475172
CERADediting_969553chr22_20133635_+0.04771191173383230.161946217655332.10175575277588e-060.3761241684871620.007448415493134690.217696870547747
CERADediting_969557chr22_20133692_+0.0009694739970954510.2667160199624111.53118024157251e-070.4127494427468010.003255358997151520.238769461677557
CERADediting_969559chr22_20134963_+0.008781168476197860.2132761211206811.17026300496864e-050.349449622006470.03343106943933140.173788146346406
CERADediting_969561chr22_20134975_+0.0009627653853982870.2668678018846052.59348189026573e-050.3362193904109230.0107875863172470.207629489399453
CERADediting_969562chr22_20134980_+0.005442352202073780.2259028692008882.19279941140236e-050.3390599172677650.002893734365980840.241625451515862
CERADediting_969564chr22_20135032_+8.89100604349984e-050.3144610000605323.26179005808274e-050.3322931844782850.0005382706316927070.279277589403478
CERADediting_969565chr22_20135044_+0.0001885304875994640.3003165045164996.21352868069613e-100.4779397468003390.05070468571461120.159850828873653
CERADediting_969567chr22_20135058_+0.002311280665794530.2469875357492627.52802650352174e-050.3174985328384520.8149136311060710.0192729758673407
CERADediting_969569chr22_20135071_+0.0004353333620295950.2836675554809491.37608192350717e-060.3823538092592590.004566274603462920.23037368002139
CERADediting_969572chr22_20135131_+4.67977029552652e-060.3639852736927452.20366114029295e-080.4372904779798730.01994627454867530.189884118446879
CERADediting_969573chr22_20135134_+0.0003148304659607830.2902358704356751.75646833962932e-070.4109353158235270.2107897625920250.102765047539886
CERADediting_969574chr22_20135179_+0.007939165583890470.215993082552412.57589985063722e-050.336335068582180.08421865344480090.14145929217994
CERADediting_969575chr22_20135197_+8.15831816797011e-050.3160349197092467.46477738335135e-070.3911295168917230.001565598801769210.256020401988988

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFC3.83418471013197e-230.5227847868072572.22085898451064e-280.5724067623323662.26228776491747e-250.544922028569556
AC2.36755738706823e-300.6412191402405844.67410925634394e-300.6387030305977061.93632214922676e-190.529132636574589
PCC7.42882101630698e-210.610046978900988.43428114837161e-250.6551917376352471.29805765504392e-070.370718320400808
CER7.18594604146462e-100.4763834198390079.18020084605243e-230.6927480500343721.61125270720862e-060.380048194494815
TCX5.17209279834181e-160.5996153906386872.32232292093459e-070.4072111330141017.61498473255969e-110.49958016457172
FP1.82292774060108e-100.4546810015131590.008529168157560790.1966116811680938.05300089299457e-140.521834506099372
IFG1.42909157128142e-050.752527637368987.10400085441708e-060.7688969035661640.02325664502731090.452143995778496
STG1.22260606854465e-060.5008390316815480.07210938725515540.1972473354288130.0003674139280245070.379719012685697

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Relation with AD stages for ZDHHC8

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.
CERADediting_969542chr22_20133552_+0.0002613421014194550.344497573870203
CERADediting_969562chr22_20134980_+0.0001574906462356320.355796041605415
CERADediting_969564chr22_20135032_+0.0002336455991927450.347033477422752
CERADediting_969565chr22_20135044_+0.0003272686047599370.339339574161345
CERADediting_969569chr22_20135071_+5.41944501220846e-050.378301305733804
CERADediting_969574chr22_20135179_+6.75503800856117e-060.41799693780496
CERADediting_969575chr22_20135197_+1.66466666980402e-070.478140305985131
CERADediting_969577chr22_20135219_+0.0004644111031329450.331132678727023

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.
CER2.3688212803791e-090.535414011914015
TCX2.95969726760906e-080.506839122274143

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RelatedDrugs for ZDHHC8

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for ZDHHC8

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
ZDHHC8C0036341Schizophrenia5PSYGENET
ZDHHC8C0005586Bipolar Disorder1PSYGENET