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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited versus non-edited samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with AD stages

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene


Gene summary for LYPD5

check button Gene summary
Gene informationGene symbol

LYPD5

Gene ID

284348

Gene nameLY6/PLAUR domain containing 5
SynonymsPRO4356
Cytomap

19q13.31

Type of geneprotein-coding
Descriptionly6/PLAUR domain-containing protein 5metastasis-associated protein
Modification date20200313
UniProtAcc

Q6UWN5,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for LYPD5

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_758381(43785931, -), ADediting_758382(43785944, -), ADediting_758383(43785951, -), ADediting_758384(43785961, -), ADediting_758385(43786362, -), ADediting_758386(43786364, -), ADediting_758387(43786365, -), ADediting_758388(43786373, -), ADediting_758389(43786402, -), ADediting_758390(43786408, -), ADediting_758391(43786412, -), ADediting_758392(43786476, -), ADediting_758393(43786490, -), ADediting_758394(43786501, -), ADediting_758395(43786515, -), ADediting_758396(43786516, -), ADediting_758397(43786521, -), ADediting_758398(43786522, -), ADediting_758399(43786524, -), ADediting_758400(43786564, -), ADediting_758401(43786569, -), ADediting_758402(43787353, -), ADediting_758403(43787361, -), ADediting_758404(43787413, -), ADediting_758405(43787430, -), ADediting_758406(43787433, -), ADediting_758407(43787477, -), ADediting_758408(43787487, -), ADediting_758409(43787499, -), ADediting_758410(43787516, -), ADediting_758411(43787555, -), ADediting_758412(43788649, -), ADediting_758413(43788675, -), ADediting_758414(43788697, -), ADediting_758415(43788711, -), ADediting_758416(43788729, -), ADediting_758417(43788792, -), ADediting_758418(43788819, -), ADediting_758419(43788832, -), ADediting_758420(43788845, -), ADediting_758421(43788846, -), ADediting_758422(43789745, -), ADediting_758423(43789762, -), ADediting_758424(43789808, -), ADediting_758425(43789818, -), ADediting_758426(43789829, -), ADediting_758427(43789835, -), ADediting_758428(43789896, -), ADediting_758429(43789900, -), ADediting_758430(43789901, -), ADediting_758431(43789916, -), ADediting_758432(43789924, -), ADediting_758433(43789928, -), ADediting_758434(43789939, -), ADediting_758435(43789943, -), ADediting_758436(43789964, -), ADediting_758437(43789969, -), ADediting_758438(43789970, -), ADediting_758439(43790292, -), ADediting_758440(43790349, -), ADediting_758441(43790353, -), ADediting_758442(43790427, -), ADediting_758443(43790434, -), ADediting_758444(43791214, -), ADediting_758445(43791247, -), ADediting_758446(43791250, -), ADediting_758447(43791286, -), ADediting_758448(43791366, -), ADediting_758449(43791373, -), ADediting_758450(43791396, -), ADediting_758451(43791404, -), ADediting_758452(43791412, -), ADediting_758453(43791644, -), ADediting_758454(43791648, -), ADediting_758455(43791664, -), ADediting_758456(43791670, -), ADediting_758457(43791697, -), ADediting_758458(43791723, -), ADediting_758460(43792248, -), ADediting_758461(43792759, -), ADediting_758462(43792771, -), ADediting_758463(43792772, -), ADediting_758464(43792790, -), ADediting_758465(43792799, -), ADediting_758466(43792812, -), ADediting_758467(43792813, -), ADediting_758468(43792823, -), ADediting_758469(43792831, -), ADediting_758470(43792877, -), ADediting_758471(43792950, -), ADediting_758472(43792953, -), ADediting_758473(43793008, -), ADediting_758474(43793035, -), ADediting_758475(43793037, -), ADediting_758479(43793479, -), ADediting_758480(43793491, -), ADediting_758481(43793501, -), ADediting_758482(43793573, -), ADediting_758483(43793619, -), ADediting_758484(43793629, -), ADediting_758485(43793641, -), ADediting_758486(43793654, -), ADediting_758487(43793655, -), ADediting_758488(43793658, -), ADediting_758489(43793665, -), ADediting_758490(43793697, -), ADediting_758491(43794559, -), ADediting_758492(43794563, -), ADediting_758493(43794579, -), ADediting_758494(43794583, -), ADediting_758495(43794589, -), ADediting_758496(43794592, -), ADediting_758497(43794598, -), ADediting_758498(43794602, -), ADediting_758499(43794615, -), ADediting_758500(43794619, -), ADediting_758501(43794643, -), ADediting_758502(43794647, -), ADediting_758503(43794648, -), ADediting_758504(43794649, -), ADediting_758505(43794650, -), ADediting_758506(43794652, -), ADediting_758507(43794655, -), ADediting_758508(43794656, -), ADediting_758509(43794682, -), ADediting_758510(43794697, -), ADediting_758511(43794698, -), ADediting_758512(43794706, -), ADediting_758513(43794716, -), ADediting_758514(43794743, -), ADediting_758515(43794746, -), ADediting_758516(43794752, -), ADediting_758517(43795229, -), ADediting_758518(43795231, -), ADediting_758519(43795236, -), ADediting_758520(43795244, -), ADediting_758521(43795267, -), ADediting_758522(43795270, -), ADediting_758523(43795271, -), ADediting_758524(43795284, -), ADediting_758525(43795285, -), ADediting_758526(43795291, -), ADediting_758527(43795321, -), ADediting_758528(43795323, -), ADediting_758529(43795332, -), ADediting_758530(43795340, -), ADediting_758531(43795341, -), ADediting_758532(43795377, -), ADediting_758533(43795380, -), ADediting_758534(43795389, -), ADediting_758535(43795394, -), ADediting_758536(43795402, -), ADediting_758537(43795403, -), ADediting_758538(43795406, -), ADediting_758539(43795407, -), ADediting_758540(43795413, -), ADediting_758541(43795421, -), ADediting_758542(43795432, -), ADediting_758543(43795440, -), ADediting_758544(43795441, -), ADediting_758545(43795466, -), ADediting_758546(43795478, -), ADediting_758547(43806497, -), ADediting_758548(43806500, -), ADediting_758549(43806506, -), ADediting_758550(43806508, -), ADediting_758551(43806519, -), ADediting_758552(43806540, -), ADediting_758553(43806578, -), ADediting_758554(43811610, -), ADediting_758555(43811655, -), ADediting_758556(43815419, -), ADediting_758557(43815479, -), ADediting_1556475(43788705, -), ADediting_1556476(43789789, -), ADediting_1556477(43794593, -),

Top

RNA editing positional annotations for LYPD5 using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_758381chr19_43785931_-UTR3
ADediting_758382chr19_43785944_-UTR3
ADediting_758383chr19_43785951_-UTR3
ADediting_758384chr19_43785961_-UTR3
ADediting_758385chr19_43786362_-intronic
ADediting_758386chr19_43786364_-intronic
ADediting_758387chr19_43786365_-intronic
ADediting_758388chr19_43786373_-intronic
ADediting_758389chr19_43786402_-intronic
ADediting_758390chr19_43786408_-intronic
ADediting_758391chr19_43786412_-intronic
ADediting_758392chr19_43786476_-intronic
ADediting_758393chr19_43786490_-intronic
ADediting_758394chr19_43786501_-intronic
ADediting_758395chr19_43786515_-intronic
ADediting_758396chr19_43786516_-intronic
ADediting_758397chr19_43786521_-intronic
ADediting_758398chr19_43786522_-intronic
ADediting_758399chr19_43786524_-intronic
ADediting_758400chr19_43786564_-intronic
ADediting_758401chr19_43786569_-intronic
ADediting_758402chr19_43787353_-intronic
ADediting_758403chr19_43787361_-intronic
ADediting_758404chr19_43787413_-intronic
ADediting_758405chr19_43787430_-intronic
ADediting_758406chr19_43787433_-intronic
ADediting_758407chr19_43787477_-intronic
ADediting_758408chr19_43787487_-intronic
ADediting_758409chr19_43787499_-intronic
ADediting_758410chr19_43787516_-intronic
ADediting_758411chr19_43787555_-intronic
ADediting_758412chr19_43788649_-intronic
ADediting_758413chr19_43788675_-intronic
ADediting_758414chr19_43788697_-intronic
ADediting_758415chr19_43788711_-intronic
ADediting_758416chr19_43788729_-intronic
ADediting_758417chr19_43788792_-intronic
ADediting_758418chr19_43788819_-intronic
ADediting_758419chr19_43788832_-intronic
ADediting_758420chr19_43788845_-intronic
ADediting_758421chr19_43788846_-intronic
ADediting_758422chr19_43789745_-intronic
ADediting_758423chr19_43789762_-intronic
ADediting_758424chr19_43789808_-intronic
ADediting_758425chr19_43789818_-intronic
ADediting_758426chr19_43789829_-intronic
ADediting_758427chr19_43789835_-intronic
ADediting_758428chr19_43789896_-intronic
ADediting_758429chr19_43789900_-intronic
ADediting_758430chr19_43789901_-intronic
ADediting_758431chr19_43789916_-intronic
ADediting_758432chr19_43789924_-intronic
ADediting_758433chr19_43789928_-intronic
ADediting_758434chr19_43789939_-intronic
ADediting_758435chr19_43789943_-intronic
ADediting_758436chr19_43789964_-intronic
ADediting_758437chr19_43789969_-intronic
ADediting_758438chr19_43789970_-intronic
ADediting_758439chr19_43790292_-intronic
ADediting_758440chr19_43790349_-intronic
ADediting_758441chr19_43790353_-intronic
ADediting_758442chr19_43790427_-intronic
ADediting_758443chr19_43790434_-intronic
ADediting_758444chr19_43791214_-intronic
ADediting_758445chr19_43791247_-intronic
ADediting_758446chr19_43791250_-intronic
ADediting_758447chr19_43791286_-intronic
ADediting_758448chr19_43791366_-intronic
ADediting_758449chr19_43791373_-intronic
ADediting_758450chr19_43791396_-intronic
ADediting_758451chr19_43791404_-intronic
ADediting_758452chr19_43791412_-intronic
ADediting_758453chr19_43791644_-intronic
ADediting_758454chr19_43791648_-intronic
ADediting_758455chr19_43791664_-intronic
ADediting_758456chr19_43791670_-intronic
ADediting_758457chr19_43791697_-intronic
ADediting_758458chr19_43791723_-intronic
ADediting_758460chr19_43792248_-intronic
ADediting_758461chr19_43792759_-intronic
ADediting_758462chr19_43792771_-intronic
ADediting_758463chr19_43792772_-intronic
ADediting_758464chr19_43792790_-intronic
ADediting_758465chr19_43792799_-intronic
ADediting_758466chr19_43792812_-intronic
ADediting_758467chr19_43792813_-intronic
ADediting_758468chr19_43792823_-intronic
ADediting_758469chr19_43792831_-intronic
ADediting_758470chr19_43792877_-intronic
ADediting_758471chr19_43792950_-intronic
ADediting_758472chr19_43792953_-intronic
ADediting_758473chr19_43793008_-intronic
ADediting_758474chr19_43793035_-intronic
ADediting_758475chr19_43793037_-intronic
ADediting_758479chr19_43793479_-intronic
ADediting_758480chr19_43793491_-intronic
ADediting_758481chr19_43793501_-intronic
ADediting_758482chr19_43793573_-intronic
ADediting_758483chr19_43793619_-intronic
ADediting_758484chr19_43793629_-intronic
ADediting_758485chr19_43793641_-intronic
ADediting_758486chr19_43793654_-intronic
ADediting_758487chr19_43793655_-intronic
ADediting_758488chr19_43793658_-intronic
ADediting_758489chr19_43793665_-intronic
ADediting_758490chr19_43793697_-intronic
ADediting_758491chr19_43794559_-ncRNA_exonic
ADediting_758492chr19_43794563_-ncRNA_exonic
ADediting_758493chr19_43794579_-ncRNA_exonic
ADediting_758494chr19_43794583_-ncRNA_exonic
ADediting_758495chr19_43794589_-ncRNA_exonic
ADediting_758496chr19_43794592_-ncRNA_exonic
ADediting_758497chr19_43794598_-ncRNA_exonic
ADediting_758498chr19_43794602_-ncRNA_exonic
ADediting_758499chr19_43794615_-ncRNA_exonic
ADediting_758500chr19_43794619_-ncRNA_splicing
ADediting_758501chr19_43794643_-ncRNA_intronic
ADediting_758502chr19_43794647_-ncRNA_intronic
ADediting_758503chr19_43794648_-ncRNA_intronic
ADediting_758504chr19_43794649_-ncRNA_intronic
ADediting_758505chr19_43794650_-ncRNA_intronic
ADediting_758506chr19_43794652_-ncRNA_intronic
ADediting_758507chr19_43794655_-ncRNA_intronic
ADediting_758508chr19_43794656_-ncRNA_intronic
ADediting_758509chr19_43794682_-ncRNA_intronic
ADediting_758510chr19_43794697_-ncRNA_intronic
ADediting_758511chr19_43794698_-ncRNA_intronic
ADediting_758512chr19_43794706_-ncRNA_intronic
ADediting_758513chr19_43794716_-ncRNA_intronic
ADediting_758514chr19_43794743_-ncRNA_intronic
ADediting_758515chr19_43794746_-ncRNA_intronic
ADediting_758516chr19_43794752_-ncRNA_intronic
ADediting_758517chr19_43795229_-ncRNA_intronic
ADediting_758518chr19_43795231_-ncRNA_intronic
ADediting_758519chr19_43795236_-ncRNA_intronic
ADediting_758520chr19_43795244_-ncRNA_intronic
ADediting_758521chr19_43795267_-ncRNA_intronic
ADediting_758522chr19_43795270_-ncRNA_intronic
ADediting_758523chr19_43795271_-ncRNA_intronic
ADediting_758524chr19_43795284_-ncRNA_intronic
ADediting_758525chr19_43795285_-ncRNA_intronic
ADediting_758526chr19_43795291_-ncRNA_intronic
ADediting_758527chr19_43795321_-ncRNA_intronic
ADediting_758528chr19_43795323_-ncRNA_intronic
ADediting_758529chr19_43795332_-ncRNA_intronic
ADediting_758530chr19_43795340_-ncRNA_intronic
ADediting_758531chr19_43795341_-ncRNA_intronic
ADediting_758532chr19_43795377_-ncRNA_intronic
ADediting_758533chr19_43795380_-ncRNA_intronic
ADediting_758534chr19_43795389_-ncRNA_intronic
ADediting_758535chr19_43795394_-ncRNA_intronic
ADediting_758536chr19_43795402_-ncRNA_intronic
ADediting_758537chr19_43795403_-ncRNA_intronic
ADediting_758538chr19_43795406_-ncRNA_intronic
ADediting_758539chr19_43795407_-ncRNA_intronic
ADediting_758540chr19_43795413_-ncRNA_exonic
ADediting_758541chr19_43795421_-ncRNA_exonic
ADediting_758542chr19_43795432_-ncRNA_exonic
ADediting_758543chr19_43795440_-ncRNA_exonic
ADediting_758544chr19_43795441_-ncRNA_exonic
ADediting_758545chr19_43795466_-ncRNA_exonic
ADediting_758546chr19_43795478_-ncRNA_exonic
ADediting_758547chr19_43806497_-intronic
ADediting_758548chr19_43806500_-intronic
ADediting_758549chr19_43806506_-intronic
ADediting_758550chr19_43806508_-intronic
ADediting_758551chr19_43806519_-intronic
ADediting_758552chr19_43806540_-intronic
ADediting_758553chr19_43806578_-intronic
ADediting_758554chr19_43811610_-intronic
ADediting_758555chr19_43811655_-intronic
ADediting_758556chr19_43815419_-intronic
ADediting_758557chr19_43815479_-intronic
ADediting_1556475chr19_43788705_-intronic
ADediting_1556476chr19_43789789_-intronic
ADediting_1556477chr19_43794593_-ncRNA_exonic

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_758381chr19_43785931_-SINEAluName=AluJr,SVA_D
ADediting_758382chr19_43785944_-RetroposonSVAName=SVA_D,AluJr
ADediting_758383chr19_43785951_-SINEAluName=AluJr
ADediting_758384chr19_43785961_-SINEAluName=AluJr
ADediting_758385chr19_43786362_-SINEAluName=AluSx
ADediting_758386chr19_43786364_-SINEAluName=AluSx
ADediting_758387chr19_43786365_-SINEAluName=AluSx
ADediting_758388chr19_43786373_-SINEAluName=AluSx
ADediting_758389chr19_43786402_-SINEAluName=AluSx
ADediting_758390chr19_43786408_-SINEAluName=AluSx
ADediting_758391chr19_43786412_-SINEAluName=AluSx
ADediting_758392chr19_43786476_-SINEAluName=AluSx
ADediting_758393chr19_43786490_-SINEAluName=AluSx
ADediting_758394chr19_43786501_-SINEAluName=AluSx
ADediting_758395chr19_43786515_-SINEAluName=AluSx
ADediting_758396chr19_43786516_-SINEAluName=AluSx
ADediting_758397chr19_43786521_-SINEAluName=AluSx
ADediting_758398chr19_43786522_-SINEAluName=AluSx
ADediting_758399chr19_43786524_-SINEAluName=AluSx
ADediting_758400chr19_43786564_-SINEAluName=AluSx
ADediting_758401chr19_43786569_-SINEAluName=AluSx
ADediting_758402chr19_43787353_-SINEAluName=AluSx1
ADediting_758403chr19_43787361_-SINEAluName=AluSx1
ADediting_758404chr19_43787413_-SINEAluName=AluSx1
ADediting_758405chr19_43787430_-SINEAluName=AluSx1
ADediting_758406chr19_43787433_-SINEAluName=AluSx1
ADediting_758407chr19_43787477_-SINEAluName=AluSx1
ADediting_758408chr19_43787487_-SINEAluName=AluSx1
ADediting_758409chr19_43787499_-SINEAluName=AluSx1
ADediting_758410chr19_43787516_-SINEAluName=AluSx1
ADediting_758411chr19_43787555_-SINEAluName=AluSx1
ADediting_758412chr19_43788649_-SINEAluName=AluJo
ADediting_758413chr19_43788675_-SINEAluName=AluJo
ADediting_758414chr19_43788697_-SINEAluName=AluJo
ADediting_758415chr19_43788711_-SINEAluName=AluJo
ADediting_758416chr19_43788729_-SINEAluName=AluJo
ADediting_758417chr19_43788792_-SINEAluName=AluJo
ADediting_758418chr19_43788819_-SINEAluName=AluJo
ADediting_758419chr19_43788832_-SINEAluName=AluJo
ADediting_758420chr19_43788845_-SINEAluName=AluJo
ADediting_758421chr19_43788846_-SINEAluName=AluJo
ADediting_758422chr19_43789745_-SINEAluName=AluJr
ADediting_758423chr19_43789762_-SINEAluName=AluJr
ADediting_758424chr19_43789808_-SINEAluName=AluJr
ADediting_758425chr19_43789818_-SINEAluName=AluJr
ADediting_758426chr19_43789829_-SINEAluName=AluJr
ADediting_758427chr19_43789835_-SINEAluName=AluJr
ADediting_758428chr19_43789896_-SINEAluName=AluJr
ADediting_758429chr19_43789900_-SINEAluName=AluJr
ADediting_758430chr19_43789901_-SINEAluName=AluJr
ADediting_758431chr19_43789916_-SINEAluName=AluJr
ADediting_758432chr19_43789924_-SINEAluName=AluJr
ADediting_758433chr19_43789928_-SINEAluName=AluJr
ADediting_758434chr19_43789939_-SINEAluName=AluJr
ADediting_758435chr19_43789943_-SINEAluName=AluJr
ADediting_758436chr19_43789964_-SINEAluName=AluJr
ADediting_758437chr19_43789969_-SINEAluName=AluJr
ADediting_758438chr19_43789970_-SINEAluName=AluJr
ADediting_758439chr19_43790292_-SINEAluName=AluYm1
ADediting_758440chr19_43790349_-SINEAluName=AluYm1
ADediting_758441chr19_43790353_-SINEAluName=AluYm1
ADediting_758442chr19_43790427_-SINEAluName=AluYm1
ADediting_758443chr19_43790434_-SINEAluName=AluYm1
ADediting_758444chr19_43791214_-SINEAluName=AluJo
ADediting_758445chr19_43791247_-SINEAluName=AluJo
ADediting_758446chr19_43791250_-SINEAluName=AluJo
ADediting_758447chr19_43791286_-SINEAluName=AluJo
ADediting_758448chr19_43791366_-SINEAluName=AluJo
ADediting_758449chr19_43791373_-SINEAluName=AluJo
ADediting_758450chr19_43791396_-SINEAluName=AluJo
ADediting_758451chr19_43791404_-SINEAluName=AluJo
ADediting_758452chr19_43791412_-SINEAluName=AluJo
ADediting_758453chr19_43791644_-SINEAluName=AluY
ADediting_758454chr19_43791648_-SINEAluName=AluY
ADediting_758455chr19_43791664_-SINEAluName=AluY
ADediting_758456chr19_43791670_-SINEAluName=AluY
ADediting_758457chr19_43791697_-SINEAluName=AluY
ADediting_758458chr19_43791723_-SINEAluName=AluY
ADediting_758460chr19_43792248_-SINEAluName=AluSz
ADediting_758461chr19_43792759_-SINEAluName=AluSx
ADediting_758462chr19_43792771_-SINEAluName=AluSx
ADediting_758463chr19_43792772_-SINEAluName=AluSx
ADediting_758464chr19_43792790_-SINEAluName=AluSx
ADediting_758465chr19_43792799_-SINEAluName=AluSx
ADediting_758466chr19_43792812_-SINEAluName=AluSx
ADediting_758467chr19_43792813_-SINEAluName=AluSx
ADediting_758468chr19_43792823_-SINEAluName=AluSx
ADediting_758469chr19_43792831_-SINEAluName=AluSx
ADediting_758470chr19_43792877_-SINEAluName=AluSx
ADediting_758471chr19_43792950_-SINEAluName=AluSx
ADediting_758472chr19_43792953_-SINEAluName=AluSx
ADediting_758473chr19_43793008_-SINEAluName=AluSx
ADediting_758474chr19_43793035_-SINEAluName=AluSx
ADediting_758475chr19_43793037_-SINEAluName=AluSx
ADediting_758479chr19_43793479_-SINEAluName=AluSz
ADediting_758480chr19_43793491_-SINEAluName=AluSz
ADediting_758481chr19_43793501_-SINEAluName=AluSz
ADediting_758482chr19_43793573_-SINEAluName=AluSz
ADediting_758483chr19_43793619_-SINEAluName=AluSz
ADediting_758484chr19_43793629_-SINEAluName=AluSz
ADediting_758485chr19_43793641_-SINEAluName=AluSz
ADediting_758486chr19_43793654_-SINEAluName=AluSz
ADediting_758487chr19_43793655_-SINEAluName=AluSz
ADediting_758488chr19_43793658_-SINEAluName=AluSz
ADediting_758489chr19_43793665_-SINEAluName=AluSz
ADediting_758490chr19_43793697_-SINEAluName=AluSz
ADediting_758491chr19_43794559_-SINEAluName=AluSx1
ADediting_758492chr19_43794563_-SINEAluName=AluSx1
ADediting_758493chr19_43794579_-SINEAluName=AluSx1
ADediting_758494chr19_43794583_-SINEAluName=AluSx1
ADediting_758495chr19_43794589_-SINEAluName=AluSx1
ADediting_758496chr19_43794592_-SINEAluName=AluSx1
ADediting_758497chr19_43794598_-SINEAluName=AluSx1
ADediting_758498chr19_43794602_-SINEAluName=AluSx1
ADediting_758499chr19_43794615_-SINEAluName=AluSx1
ADediting_758500chr19_43794619_-SINEAluName=AluSx1
ADediting_758501chr19_43794643_-SINEAluName=AluSx1
ADediting_758502chr19_43794647_-SINEAluName=AluSx1
ADediting_758503chr19_43794648_-SINEAluName=AluSx1
ADediting_758504chr19_43794649_-SINEAluName=AluSx1
ADediting_758505chr19_43794650_-SINEAluName=AluSx1
ADediting_758506chr19_43794652_-SINEAluName=AluSx1
ADediting_758507chr19_43794655_-SINEAluName=AluSx1
ADediting_758508chr19_43794656_-SINEAluName=AluSx1
ADediting_758509chr19_43794682_-SINEAluName=AluSx1
ADediting_758510chr19_43794697_-SINEAluName=AluSx1
ADediting_758511chr19_43794698_-SINEAluName=AluSx1
ADediting_758512chr19_43794706_-SINEAluName=AluSx1
ADediting_758513chr19_43794716_-SINEAluName=AluSx1
ADediting_758514chr19_43794743_-SINEAluName=AluSx1
ADediting_758515chr19_43794746_-SINEAluName=AluSx1
ADediting_758516chr19_43794752_-SINEAluName=AluSx1
ADediting_758517chr19_43795229_-SINEAluName=AluJo
ADediting_758518chr19_43795231_-SINEAluName=AluJo
ADediting_758519chr19_43795236_-SINEAluName=AluJo
ADediting_758520chr19_43795244_-SINEAluName=AluJo
ADediting_758521chr19_43795267_-SINEAluName=AluJo
ADediting_758522chr19_43795270_-SINEAluName=AluJo
ADediting_758523chr19_43795271_-SINEAluName=AluJo
ADediting_758524chr19_43795284_-SINEAluName=AluJo
ADediting_758525chr19_43795285_-SINEAluName=AluJo
ADediting_758526chr19_43795291_-SINEAluName=AluJo
ADediting_758527chr19_43795321_-SINEAluName=AluJo
ADediting_758528chr19_43795323_-SINEAluName=AluJo
ADediting_758529chr19_43795332_-SINEAluName=AluJo
ADediting_758530chr19_43795340_-SINEAluName=AluJo
ADediting_758531chr19_43795341_-SINEAluName=AluJo
ADediting_758532chr19_43795377_-SINEAluName=AluJo
ADediting_758533chr19_43795380_-SINEAluName=AluJo
ADediting_758534chr19_43795389_-SINEAluName=AluJo
ADediting_758535chr19_43795394_-SINEAluName=AluJo
ADediting_758536chr19_43795402_-SINEAluName=AluJo
ADediting_758537chr19_43795403_-SINEAluName=AluJo
ADediting_758538chr19_43795406_-SINEAluName=AluJo
ADediting_758539chr19_43795407_-SINEAluName=AluJo
ADediting_758540chr19_43795413_-SINEAluName=AluJo
ADediting_758541chr19_43795421_-SINEAluName=AluJo
ADediting_758542chr19_43795432_-SINEAluName=AluJo
ADediting_758543chr19_43795440_-SINEAluName=AluJo
ADediting_758544chr19_43795441_-SINEAluName=AluJo
ADediting_758545chr19_43795466_-SINEAluName=AluJo
ADediting_758546chr19_43795478_-SINEAluName=AluJo
ADediting_758547chr19_43806497_-SINEAluName=AluSz
ADediting_758548chr19_43806500_-SINEAluName=AluSz
ADediting_758549chr19_43806506_-SINEAluName=AluSz
ADediting_758550chr19_43806508_-SINEAluName=AluSz
ADediting_758551chr19_43806519_-SINEAluName=AluSz
ADediting_758552chr19_43806540_-SINEAluName=AluSz
ADediting_758553chr19_43806578_-SINEAluName=AluSz
ADediting_758554chr19_43811610_-SINEAluName=AluSx1
ADediting_758555chr19_43811655_-SINEAluName=AluSx1
ADediting_758556chr19_43815419_-SINEAluName=AluJr
ADediting_758557chr19_43815479_-SINEAluName=AluJr
ADediting_1556475chr19_43788705_-SINEAluName=AluJo
ADediting_1556476chr19_43789789_-SINEAluName=AluJr
ADediting_1556477chr19_43794593_-SINEAluName=AluSx1

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RNA A-to-I editing events in the alternative splicing sites for LYPD5

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for LYPD5

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
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check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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ADeditome IDChrPositoingSkipped exonENSGENSTs

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Protein coding region RNA A-to-I editings for LYPD5

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for LYPD5


check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_286380chr11_79422188_-ENSG00000159871.15ENST00000377950.8LYPD5-201hsa-miR-5579-3pchr1943795927437959337mer-m84379592743795946154-11.96
ADediting_286380chr11_79422188_-ENSG00000159871.15ENST00000377950.8LYPD5-201hsa-miR-5579-3pchr1943797005437970117mer-m84379700443797025156-21.31
ADediting_286380chr11_79422188_-ENSG00000159871.15ENST00000377950.8LYPD5-201hsa-miR-5579-3pchr1943797087437970937mer-m84379708643797107156-16.71
ADediting_286380chr11_79422188_-ENSG00000159871.15ENST00000414615.6LYPD5-202hsa-miR-5579-3pchr1943797005437970117mer-m84379700443797025156-21.31
ADediting_286380chr11_79422188_-ENSG00000159871.15ENST00000414615.6LYPD5-202hsa-miR-5579-3pchr1943797087437970937mer-m84379708643797107156-16.71
ADediting_286380chr11_79422188_-ENSG00000159871.15ENST00000594013.5LYPD5-203hsa-miR-5579-3pchr1943797005437970117mer-m84379700443797025156-21.31
ADediting_286380chr11_79422188_-ENSG00000159871.15ENST00000594013.5LYPD5-203hsa-miR-5579-3pchr1943797087437970937mer-m84379708643797107156-16.71
ADediting_291761chr11_93733708_-ENSG00000159871.15ENST00000377950.8LYPD5-201hsa-miR-1304-3pchr1943796584437965907mer-m84379658343796603146-19.77
ADediting_291761chr11_93733708_-ENSG00000159871.15ENST00000414615.6LYPD5-202hsa-miR-1304-3pchr1943796584437965907mer-m84379658343796603146-19.77
ADediting_98289chr1_32086992_+ENSG00000159871.15ENST00000377950.8LYPD5-201hsa-miR-5585-3pchr1943796957437969637mer-m84379695643796976154-22.69
ADediting_98289chr1_32086992_+ENSG00000159871.15ENST00000377950.8LYPD5-201hsa-miR-5585-3pchr1943797121437971277mer-m84379712043797140154-22.69
ADediting_98289chr1_32086992_+ENSG00000159871.15ENST00000414615.6LYPD5-202hsa-miR-5585-3pchr1943796957437969637mer-m84379695643796976154-22.69
ADediting_98289chr1_32086992_+ENSG00000159871.15ENST00000414615.6LYPD5-202hsa-miR-5585-3pchr1943797121437971277mer-m84379712043797140154-22.69
ADediting_98289chr1_32086992_+ENSG00000159871.15ENST00000594013.5LYPD5-203hsa-miR-5585-3pchr1943797121437971277mer-m84379712043797140154-22.69

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1337758chr7_5495892_-ENSG00000159871.15ENST00000377950.8LYPD5-201hsa-miR-589-5pchr1943796013437960208mer-1a4379601343796037150-19.65
ADediting_1556067chr19_40282625_-ENSG00000159871.15ENST00000377950.8LYPD5-201hsa-miR-641chr1943797226437972327mer-m84379722543797249149-19.72
ADediting_1556067chr19_40282625_-ENSG00000159871.15ENST00000414615.6LYPD5-202hsa-miR-641chr1943797226437972327mer-m84379722543797249149-19.72
ADediting_1556067chr19_40282625_-ENSG00000159871.15ENST00000594013.5LYPD5-203hsa-miR-641chr1943797226437972327mer-m84379722543797249149-19.72
ADediting_1631458chr19_40282624_-ENSG00000159871.15ENST00000377950.8LYPD5-201hsa-miR-641chr1943797226437972327mer-m84379722543797249149-19.72
ADediting_1631458chr19_40282624_-ENSG00000159871.15ENST00000414615.6LYPD5-202hsa-miR-641chr1943797226437972327mer-m84379722543797249149-19.72
ADediting_1631458chr19_40282624_-ENSG00000159871.15ENST00000594013.5LYPD5-203hsa-miR-641chr1943797226437972327mer-m84379722543797249149-19.72
ADediting_291761chr11_93733708_-ENSG00000159871.15ENST00000377950.8LYPD5-201hsa-miR-1304-3pchr1943796267437962748mer-1a4379626743796289147-15.62
ADediting_291761chr11_93733708_-ENSG00000159871.15ENST00000377950.8LYPD5-201hsa-miR-1304-3pchr1943796835437968417mer-m84379683443796855152-19.87
ADediting_291761chr11_93733708_-ENSG00000159871.15ENST00000414615.6LYPD5-202hsa-miR-1304-3pchr1943796267437962748mer-1a4379626743796289147-15.62
ADediting_291761chr11_93733708_-ENSG00000159871.15ENST00000414615.6LYPD5-202hsa-miR-1304-3pchr1943796835437968417mer-m84379683443796855152-19.87
ADediting_496066chr15_66496985_-ENSG00000159871.15ENST00000377950.8LYPD5-201hsa-miR-4512chr1943796088437960947mer-m84379608743796107150-20.99

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for LYPD5

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for LYPD5

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFCADediting_758395chr19_43786515_-3.24844095385914e-080.3075415778585371.64523958824447e-090.3339193128770560.0008460838328480730.188601771058348
DLPFCADediting_758396chr19_43786516_-3.53608106741429e-110.3645715362400963.25015936552042e-120.3820978384449311.5178838528918e-050.24299381437311
TCXADediting_758419chr19_43788832_-0.009508551450404440.2111086438574140.0001269849362933630.307842391226740.341730662993718-0.0781635442221046
DLPFCADediting_758440chr19_43790349_-0.001330486015801360.1814942574855010.3170472998198290.05701116165658931.87256678029273e-100.351670133772915
DLPFCADediting_758441chr19_43790353_-7.57690563630898e-060.2511917033982080.01089410118318220.1444319578209731.66490990764005e-110.370217244958585
DLPFCADediting_758460chr19_43792248_-0.1098891893467280.09097870587318460.2820982126112040.06128111496406613.50082862462565e-080.306845766234271
DLPFCADediting_758482chr19_43793573_-0.3114683561123110.05767113659208330.975770573984040.001731995088749222.88139884031444e-080.308652792903605
TCXADediting_758484chr19_43793629_-0.003096907442219520.2399836879575327.79481402502231e-050.3168655288185110.403130648146206-0.0687569855719048
TCXADediting_758488chr19_43793658_-0.0004475724829599370.2830981367607979.85864970402765e-060.3522237474174170.0849992406769291-0.141108280301217

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFC4.85849597741124e-950.8667038569765052.44374261292935e-1150.9034716909166470.57571412414511-0.031907125274787
AC1.07990185074993e-810.8789008903420821.15386274903227e-820.8812087589743970.01465744633866110.154213885844049
PCC8.38152710116692e-650.8854315384172452.78221300634746e-870.9354231508235490.4126401591470410.0596179089973149
CER4.16134913399656e-110.5055390664327257.84696703794127e-050.3167441593979720.4578793444740740.0610663289187494
TCX1.15693627839026e-330.7929894633610324.77627687004665e-350.8027589850012830.0470325681180963-0.16243702631787
FP2.25522565066069e-240.6681187442613541.20205620049715e-230.6601737636195940.6958491131762460.0295029043356814
IFG2.92419671613898e-060.7879456533798715.40323032613818e-070.8195372644669230.4415953138818180.161140307373165
PG2.65316365229325e-300.7140336067876341.80878464112976e-350.7543504794367520.0766494398814583-0.130141574780586
STG7.3192769641153e-160.7413942253334485.30389512264504e-160.7437445879068380.0785392027095008-0.193029933418149

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Relation with AD stages for LYPD5

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.

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RelatedDrugs for LYPD5

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for LYPD5

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource