|
Differntial gene expression between RNA A-to-I edited versus non-edited samples | |
The effects of the RNA editing to the stability of the RNA structures | |
Gene summary for C14orf178 |
Gene summary |
Gene information | Gene symbol | C14orf178 | Gene ID | 283579 |
Gene name | chromosome 14 open reading frame 178 | |
Synonyms | - | |
Cytomap | 14q24.3 | |
Type of gene | ncRNA | |
Description | uncharacterized protein C14orf178 | |
Modification date | 20200313 | |
UniProtAcc | Q8N769, | |
Context |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for C14orf178 |
RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
RNA editing frequencies across three data sets. |
The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
RNA A-to-I editing events in AD. |
ADediting_453832(77762045, +), ADediting_453833(77762058, +), ADediting_453834(77762148, +), ADediting_453835(77762152, +), ADediting_453836(77762153, +), ADediting_453837(77762154, +), ADediting_453838(77762166, +), ADediting_453839(77762192, +), ADediting_453840(77762198, +), ADediting_453841(77762202, +), ADediting_453842(77762253, +), ADediting_453843(77762262, +), ADediting_453844(77762267, +), ADediting_453845(77762895, +), ADediting_453846(77762904, +), ADediting_453847(77762912, +), ADediting_453848(77762938, +), ADediting_453849(77762939, +), ADediting_453850(77762944, +), ADediting_453851(77762948, +), ADediting_453852(77762965, +), ADediting_453853(77762971, +), ADediting_453854(77762980, +), ADediting_453855(77762994, +), ADediting_453856(77764983, +), ADediting_453857(77765006, +), ADediting_453858(77765069, +), ADediting_453859(77765072, +), ADediting_453860(77765103, +), ADediting_453861(77765124, +), ADediting_453862(77765132, +), ADediting_453863(77765136, +), ADediting_453864(77765696, +), ADediting_453865(77765743, +), ADediting_453866(77765760, +), ADediting_453867(77766163, +), ADediting_453868(77766176, +), ADediting_453869(77766209, +), ADediting_453870(77766225, +), ADediting_453871(77766231, +), ADediting_453872(77766232, +), ADediting_453873(77766244, +), ADediting_453874(77766249, +), ADediting_453875(77766257, +), ADediting_453876(77766261, +), ADediting_453877(77766311, +), ADediting_453878(77766317, +), ADediting_453879(77766973, +), ADediting_453880(77767049, +), ADediting_453881(77767055, +), ADediting_453882(77767061, +), ADediting_453883(77767066, +), ADediting_453884(77767105, +), ADediting_453885(77767111, +), ADediting_453886(77767119, +), ADediting_453887(77767132, +), ADediting_453888(77767151, +), ADediting_453889(77767167, +), ADediting_453890(77767175, +), ADediting_453891(77767208, +), ADediting_453892(77767961, +), ADediting_453893(77768023, +), ADediting_453894(77768119, +), ADediting_453895(77768158, +), ADediting_453896(77769244, +), ADediting_453897(77769249, +), ADediting_453898(77769276, +), ADediting_453899(77769277, +), ADediting_453900(77769330, +), ADediting_453901(77769352, +), ADediting_453902(77769378, +), ADediting_453903(77769396, +), ADediting_453904(77769448, +), ADediting_453905(77769475, +), ADediting_453906(77769487, +), ADediting_1538074(77762137, +), ADediting_1538075(77762901, +), ADediting_1538076(77762902, +), ADediting_1538077(77762955, +), ADediting_1538078(77765098, +), ADediting_1538079(77765163, +), ADediting_1538080(77765772, +), ADediting_1538081(77765823, +), ADediting_1538082(77766155, +), ADediting_1538083(77766193, +), ADediting_1538084(77766265, +), ADediting_1538085(77766271, +), ADediting_1538086(77766325, +), ADediting_1538087(77766363, +), ADediting_1538088(77767079, +), |
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RNA editing positional annotations for C14orf178 using Annovar |
Protein coding RNA editing(s). |
ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
ADediting_453904 | chr14_77769448_+ | nonsynonymous SNV | ENST00000439131.2 | c.A49G | p.S17G | 0.48 | 0.248 | -0.66 |
ADediting_453904 | chr14_77769448_+ | nonsynonymous SNV | ENST00000355883.4 | c.A139G | p.S47G | 0.48 | 0.248 | -0.66 |
ADediting_453905 | chr14_77769475_+ | nonsynonymous SNV | ENST00000439131.2 | c.A76G | p.S26G | 0.026 | 0.168 | -3.54 |
ADediting_453905 | chr14_77769475_+ | nonsynonymous SNV | ENST00000355883.4 | c.A166G | p.S56G | 0.026 | 0.168 | -3.54 |
ADediting_453906 | chr14_77769487_+ | nonsynonymous SNV | ENST00000439131.2 | c.A88G | p.T30A | 0.019 | 0.295 | -4.34 |
ADediting_453906 | chr14_77769487_+ | nonsynonymous SNV | ENST00000355883.4 | c.A178G | p.T60A | 0.019 | 0.295 | -4.34 |
Gene structure information of RNA editing(s). |
ADeditome ID | Position | Variant type |
ADediting_453832 | chr14_77762045_+ | intronic |
ADediting_453833 | chr14_77762058_+ | intronic |
ADediting_453834 | chr14_77762148_+ | intronic |
ADediting_453835 | chr14_77762152_+ | intronic |
ADediting_453836 | chr14_77762153_+ | intronic |
ADediting_453837 | chr14_77762154_+ | intronic |
ADediting_453838 | chr14_77762166_+ | intronic |
ADediting_453839 | chr14_77762192_+ | intronic |
ADediting_453840 | chr14_77762198_+ | intronic |
ADediting_453841 | chr14_77762202_+ | intronic |
ADediting_453842 | chr14_77762253_+ | intronic |
ADediting_453843 | chr14_77762262_+ | intronic |
ADediting_453844 | chr14_77762267_+ | intronic |
ADediting_453845 | chr14_77762895_+ | intronic |
ADediting_453846 | chr14_77762904_+ | intronic |
ADediting_453847 | chr14_77762912_+ | intronic |
ADediting_453848 | chr14_77762938_+ | intronic |
ADediting_453849 | chr14_77762939_+ | intronic |
ADediting_453850 | chr14_77762944_+ | intronic |
ADediting_453851 | chr14_77762948_+ | intronic |
ADediting_453852 | chr14_77762965_+ | intronic |
ADediting_453853 | chr14_77762971_+ | intronic |
ADediting_453854 | chr14_77762980_+ | intronic |
ADediting_453855 | chr14_77762994_+ | intronic |
ADediting_453856 | chr14_77764983_+ | intronic |
ADediting_453857 | chr14_77765006_+ | intronic |
ADediting_453858 | chr14_77765069_+ | intronic |
ADediting_453859 | chr14_77765072_+ | intronic |
ADediting_453860 | chr14_77765103_+ | intronic |
ADediting_453861 | chr14_77765124_+ | intronic |
ADediting_453862 | chr14_77765132_+ | intronic |
ADediting_453863 | chr14_77765136_+ | intronic |
ADediting_453864 | chr14_77765696_+ | intronic |
ADediting_453865 | chr14_77765743_+ | intronic |
ADediting_453866 | chr14_77765760_+ | intronic |
ADediting_453867 | chr14_77766163_+ | intronic |
ADediting_453868 | chr14_77766176_+ | intronic |
ADediting_453869 | chr14_77766209_+ | intronic |
ADediting_453870 | chr14_77766225_+ | intronic |
ADediting_453871 | chr14_77766231_+ | intronic |
ADediting_453872 | chr14_77766232_+ | intronic |
ADediting_453873 | chr14_77766244_+ | intronic |
ADediting_453874 | chr14_77766249_+ | intronic |
ADediting_453875 | chr14_77766257_+ | intronic |
ADediting_453876 | chr14_77766261_+ | intronic |
ADediting_453877 | chr14_77766311_+ | intronic |
ADediting_453878 | chr14_77766317_+ | intronic |
ADediting_453879 | chr14_77766973_+ | intronic |
ADediting_453880 | chr14_77767049_+ | intronic |
ADediting_453881 | chr14_77767055_+ | intronic |
ADediting_453882 | chr14_77767061_+ | intronic |
ADediting_453883 | chr14_77767066_+ | intronic |
ADediting_453884 | chr14_77767105_+ | intronic |
ADediting_453885 | chr14_77767111_+ | intronic |
ADediting_453886 | chr14_77767119_+ | intronic |
ADediting_453887 | chr14_77767132_+ | intronic |
ADediting_453888 | chr14_77767151_+ | intronic |
ADediting_453889 | chr14_77767167_+ | intronic |
ADediting_453890 | chr14_77767175_+ | intronic |
ADediting_453891 | chr14_77767208_+ | intronic |
ADediting_453892 | chr14_77767961_+ | intronic |
ADediting_453893 | chr14_77768023_+ | intronic |
ADediting_453894 | chr14_77768119_+ | intronic |
ADediting_453895 | chr14_77768158_+ | intronic |
ADediting_453896 | chr14_77769244_+ | intronic |
ADediting_453897 | chr14_77769249_+ | intronic |
ADediting_453898 | chr14_77769276_+ | intronic |
ADediting_453899 | chr14_77769277_+ | intronic |
ADediting_453900 | chr14_77769330_+ | intronic |
ADediting_453901 | chr14_77769352_+ | intronic |
ADediting_453902 | chr14_77769378_+ | intronic |
ADediting_453903 | chr14_77769396_+ | splicing |
ADediting_453904 | chr14_77769448_+ | exonic |
ADediting_453905 | chr14_77769475_+ | exonic |
ADediting_453906 | chr14_77769487_+ | exonic |
ADediting_1538074 | chr14_77762137_+ | intronic |
ADediting_1538075 | chr14_77762901_+ | intronic |
ADediting_1538076 | chr14_77762902_+ | intronic |
ADediting_1538077 | chr14_77762955_+ | intronic |
ADediting_1538078 | chr14_77765098_+ | intronic |
ADediting_1538079 | chr14_77765163_+ | intronic |
ADediting_1538080 | chr14_77765772_+ | intronic |
ADediting_1538081 | chr14_77765823_+ | intronic |
ADediting_1538082 | chr14_77766155_+ | intronic |
ADediting_1538083 | chr14_77766193_+ | intronic |
ADediting_1538084 | chr14_77766265_+ | intronic |
ADediting_1538085 | chr14_77766271_+ | intronic |
ADediting_1538086 | chr14_77766325_+ | intronic |
ADediting_1538087 | chr14_77766363_+ | intronic |
ADediting_1538088 | chr14_77767079_+ | intronic |
Repat-regional RNA editing(s). |
ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
ADediting_453832 | chr14_77762045_+ | SINE | Alu | Name=AluSx |
ADediting_453833 | chr14_77762058_+ | SINE | Alu | Name=AluSx |
ADediting_453834 | chr14_77762148_+ | SINE | Alu | Name=AluSx |
ADediting_453835 | chr14_77762152_+ | SINE | Alu | Name=AluSx |
ADediting_453836 | chr14_77762153_+ | SINE | Alu | Name=AluSx |
ADediting_453837 | chr14_77762154_+ | SINE | Alu | Name=AluSx |
ADediting_453838 | chr14_77762166_+ | SINE | Alu | Name=AluSx |
ADediting_453839 | chr14_77762192_+ | SINE | Alu | Name=AluSx |
ADediting_453840 | chr14_77762198_+ | SINE | Alu | Name=AluSx |
ADediting_453841 | chr14_77762202_+ | SINE | Alu | Name=AluSx |
ADediting_453842 | chr14_77762253_+ | SINE | Alu | Name=AluSx |
ADediting_453843 | chr14_77762262_+ | SINE | Alu | Name=AluSx |
ADediting_453844 | chr14_77762267_+ | SINE | Alu | Name=AluSx |
ADediting_453845 | chr14_77762895_+ | SINE | Alu | Name=AluSp |
ADediting_453846 | chr14_77762904_+ | SINE | Alu | Name=AluSp |
ADediting_453847 | chr14_77762912_+ | SINE | Alu | Name=AluSp |
ADediting_453848 | chr14_77762938_+ | SINE | Alu | Name=AluSp |
ADediting_453849 | chr14_77762939_+ | SINE | Alu | Name=AluSp |
ADediting_453850 | chr14_77762944_+ | SINE | Alu | Name=AluSp |
ADediting_453851 | chr14_77762948_+ | SINE | Alu | Name=AluSp |
ADediting_453852 | chr14_77762965_+ | SINE | Alu | Name=AluSp |
ADediting_453853 | chr14_77762971_+ | SINE | Alu | Name=AluSp |
ADediting_453854 | chr14_77762980_+ | SINE | Alu | Name=AluSp |
ADediting_453855 | chr14_77762994_+ | SINE | Alu | Name=AluSp |
ADediting_453856 | chr14_77764983_+ | SINE | Alu | Name=AluSz |
ADediting_453857 | chr14_77765006_+ | SINE | Alu | Name=AluSz |
ADediting_453858 | chr14_77765069_+ | SINE | Alu | Name=AluSz |
ADediting_453859 | chr14_77765072_+ | SINE | Alu | Name=AluSz |
ADediting_453860 | chr14_77765103_+ | SINE | Alu | Name=AluSz |
ADediting_453861 | chr14_77765124_+ | SINE | Alu | Name=AluSz |
ADediting_453862 | chr14_77765132_+ | SINE | Alu | Name=AluSz |
ADediting_453863 | chr14_77765136_+ | SINE | Alu | Name=AluSz |
ADediting_453864 | chr14_77765696_+ | SINE | Alu | Name=AluSq2 |
ADediting_453865 | chr14_77765743_+ | SINE | Alu | Name=AluSq2 |
ADediting_453866 | chr14_77765760_+ | SINE | Alu | Name=AluSq2 |
ADediting_453867 | chr14_77766163_+ | SINE | Alu | Name=AluJb |
ADediting_453868 | chr14_77766176_+ | SINE | Alu | Name=AluJb |
ADediting_453869 | chr14_77766209_+ | SINE | Alu | Name=AluJb |
ADediting_453870 | chr14_77766225_+ | SINE | Alu | Name=AluJb |
ADediting_453871 | chr14_77766231_+ | SINE | Alu | Name=AluJb |
ADediting_453872 | chr14_77766232_+ | SINE | Alu | Name=AluJb |
ADediting_453873 | chr14_77766244_+ | SINE | Alu | Name=AluJb |
ADediting_453874 | chr14_77766249_+ | SINE | Alu | Name=AluJb |
ADediting_453875 | chr14_77766257_+ | SINE | Alu | Name=AluJb |
ADediting_453876 | chr14_77766261_+ | SINE | Alu | Name=AluJb |
ADediting_453877 | chr14_77766311_+ | SINE | Alu | Name=AluJb |
ADediting_453878 | chr14_77766317_+ | SINE | Alu | Name=AluJb |
ADediting_453879 | chr14_77766973_+ | SINE | Alu | Name=AluY |
ADediting_453880 | chr14_77767049_+ | SINE | Alu | Name=AluY |
ADediting_453881 | chr14_77767055_+ | SINE | Alu | Name=AluY |
ADediting_453882 | chr14_77767061_+ | SINE | Alu | Name=AluY |
ADediting_453883 | chr14_77767066_+ | SINE | Alu | Name=AluY |
ADediting_453884 | chr14_77767105_+ | SINE | Alu | Name=AluY |
ADediting_453885 | chr14_77767111_+ | SINE | Alu | Name=AluY |
ADediting_453886 | chr14_77767119_+ | SINE | Alu | Name=AluY |
ADediting_453887 | chr14_77767132_+ | SINE | Alu | Name=AluY |
ADediting_453888 | chr14_77767151_+ | SINE | Alu | Name=AluY |
ADediting_453889 | chr14_77767167_+ | SINE | Alu | Name=AluY |
ADediting_453890 | chr14_77767175_+ | SINE | Alu | Name=AluY |
ADediting_453891 | chr14_77767208_+ | SINE | Alu | Name=AluY |
ADediting_453892 | chr14_77767961_+ | SINE | Alu | Name=AluSz |
ADediting_453893 | chr14_77768023_+ | SINE | Alu | Name=AluSz |
ADediting_453894 | chr14_77768119_+ | SINE | Alu | Name=AluSz |
ADediting_453895 | chr14_77768158_+ | SINE | Alu | Name=AluSz |
ADediting_453896 | chr14_77769244_+ | SINE | Alu | Name=AluJb |
ADediting_453897 | chr14_77769249_+ | SINE | Alu | Name=AluJb |
ADediting_453898 | chr14_77769276_+ | SINE | Alu | Name=AluJb |
ADediting_453899 | chr14_77769277_+ | SINE | Alu | Name=AluJb |
ADediting_453900 | chr14_77769330_+ | SINE | Alu | Name=AluJb |
ADediting_453901 | chr14_77769352_+ | SINE | Alu | Name=AluJb |
ADediting_453902 | chr14_77769378_+ | SINE | Alu | Name=AluJb |
ADediting_453903 | chr14_77769396_+ | SINE | Alu | Name=AluJb |
ADediting_453904 | chr14_77769448_+ | SINE | Alu | Name=AluJb |
ADediting_453905 | chr14_77769475_+ | SINE | Alu | Name=AluJb |
ADediting_453906 | chr14_77769487_+ | SINE | Alu | Name=AluJb |
ADediting_1538074 | chr14_77762137_+ | SINE | Alu | Name=AluSx |
ADediting_1538075 | chr14_77762901_+ | SINE | Alu | Name=AluSp |
ADediting_1538076 | chr14_77762902_+ | SINE | Alu | Name=AluSp |
ADediting_1538077 | chr14_77762955_+ | SINE | Alu | Name=AluSp |
ADediting_1538078 | chr14_77765098_+ | SINE | Alu | Name=AluSz |
ADediting_1538079 | chr14_77765163_+ | SINE | Alu | Name=AluSz |
ADediting_1538080 | chr14_77765772_+ | SINE | Alu | Name=AluSq2 |
ADediting_1538081 | chr14_77765823_+ | SINE | Alu | Name=AluSq2 |
ADediting_1538082 | chr14_77766155_+ | SINE | Alu | Name=AluJb |
ADediting_1538083 | chr14_77766193_+ | SINE | Alu | Name=AluJb |
ADediting_1538084 | chr14_77766265_+ | SINE | Alu | Name=AluJb |
ADediting_1538085 | chr14_77766271_+ | SINE | Alu | Name=AluJb |
ADediting_1538086 | chr14_77766325_+ | SINE | Alu | Name=AluJb |
ADediting_1538087 | chr14_77766363_+ | SINE | Alu | Name=AluJb |
ADediting_1538088 | chr14_77767079_+ | SINE | Alu | Name=AluY |
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RNA A-to-I editing events in the alternative splicing sites for C14orf178 |
RNA A-to-I editing(s) in the alternative splicing sites. |
AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for C14orf178 |
Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
- Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
Top |
Protein coding region RNA A-to-I editings for C14orf178 |
- Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for C14orf178 |
RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in lncRNA gained miRNA binding sites. |
ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
ADediting_453904 | chr14_77769448_+ | ENSG00000197734.9 | ENST00000556047.1 | C14orf178-203 | hsa-miR-1199-5p | chr14 | 77769442 | 77769448 | 7mer-m8 | 77769430 | 77769449 | 151 | -26.45 |
ADediting_453904 | chr14_77769448_+ | ENSG00000197734.9 | ENST00000556047.1 | C14orf178-203 | hsa-miR-6751-3p | chr14 | 77769442 | 77769448 | 7mer-m8 | 77769429 | 77769449 | 141 | -14.28 |
ADediting_453904 | chr14_77769448_+ | ENSG00000197734.9 | ENST00000557011.5 | C14orf178-204 | hsa-miR-1199-5p | chr14 | 77769442 | 77769448 | 7mer-m8 | 77769430 | 77769449 | 151 | -26.45 |
ADediting_453904 | chr14_77769448_+ | ENSG00000197734.9 | ENST00000557011.5 | C14orf178-204 | hsa-miR-6751-3p | chr14 | 77769442 | 77769448 | 7mer-m8 | 77769429 | 77769449 | 141 | -14.28 |
ADediting_453904 | chr14_77769448_+ | ENSG00000197734.9 | ENST00000650032.1 | C14orf178-205 | hsa-miR-1199-5p | chr14 | 77769442 | 77769448 | 7mer-m8 | 77769430 | 77769449 | 151 | -26.45 |
ADediting_453904 | chr14_77769448_+ | ENSG00000197734.9 | ENST00000650032.1 | C14orf178-205 | hsa-miR-6751-3p | chr14 | 77769442 | 77769448 | 7mer-m8 | 77769429 | 77769449 | 141 | -14.28 |
ADediting_453905 | chr14_77769475_+ | ENSG00000197734.9 | ENST00000556047.1 | C14orf178-203 | hsa-miR-3189-3p | chr14 | 77769470 | 77769476 | 7mer-m8 | 77769458 | 77769477 | 149 | -25.49 |
ADediting_453905 | chr14_77769475_+ | ENSG00000197734.9 | ENST00000556047.1 | C14orf178-203 | hsa-miR-6813-3p | chr14 | 77769471 | 77769477 | 7mer-m8 | 77769458 | 77769478 | 140 | -11.59 |
ADediting_453905 | chr14_77769475_+ | ENSG00000197734.9 | ENST00000557011.5 | C14orf178-204 | hsa-miR-3189-3p | chr14 | 77769470 | 77769476 | 7mer-m8 | 77769458 | 77769477 | 149 | -25.49 |
ADediting_453905 | chr14_77769475_+ | ENSG00000197734.9 | ENST00000557011.5 | C14orf178-204 | hsa-miR-6813-3p | chr14 | 77769471 | 77769477 | 7mer-m8 | 77769458 | 77769478 | 140 | -11.59 |
ADediting_453905 | chr14_77769475_+ | ENSG00000197734.9 | ENST00000650032.1 | C14orf178-205 | hsa-miR-3189-3p | chr14 | 77769470 | 77769476 | 7mer-m8 | 77769458 | 77769477 | 149 | -25.49 |
ADediting_453905 | chr14_77769475_+ | ENSG00000197734.9 | ENST00000650032.1 | C14orf178-205 | hsa-miR-6813-3p | chr14 | 77769471 | 77769477 | 7mer-m8 | 77769458 | 77769478 | 140 | -11.59 |
RNA A-to-I editing in lncRNA lost miRNA binding sites. |
ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs gained binding to lncRNA. |
ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs lost binding to lncRNA. |
ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for C14orf178 |
- RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
RNA A-to-I editing in miRNA. |
ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
RNA A-to-I editing in mRNA. |
ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
ADediting_453904 | ENST00000355883.4 | chr14_77769448_+ | 352 | -217.50 | -213.50 | -221.80 |
ADediting_453905 | ENST00000355883.4 | chr14_77769475_+ | 379 | -214.80 | -213.50 | -221.80 |
ADediting_453906 | ENST00000355883.4 | chr14_77769487_+ | 391 | -217.50 | -213.50 | -221.80 |
ADediting_453904 | ENST00000439131.2 | chr14_77769448_+ | 338 | -217.10 | -213.10 | -221.40 |
ADediting_453905 | ENST00000439131.2 | chr14_77769475_+ | 365 | -214.40 | -213.10 | -221.40 |
ADediting_453906 | ENST00000439131.2 | chr14_77769487_+ | 377 | -217.10 | -213.10 | -221.40 |
RNA A-to-I editing in lncRNA. |
ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
ADediting_453904 | ENST00000650032.1 | chr14_77769448_+ | 348 | -216.00 | -212.00 | -220.30 |
ADediting_453905 | ENST00000650032.1 | chr14_77769475_+ | 375 | -212.50 | -212.00 | -220.30 |
ADediting_453906 | ENST00000650032.1 | chr14_77769487_+ | 387 | -216.00 | -212.00 | -220.30 |
ADediting_453904 | ENST00000557011.5 | chr14_77769448_+ | 194 | -160.30 | -156.30 | -164.60 |
ADediting_453905 | ENST00000557011.5 | chr14_77769475_+ | 221 | -157.70 | -156.30 | -164.60 |
ADediting_453906 | ENST00000557011.5 | chr14_77769487_+ | 233 | -160.30 | -156.30 | -164.60 |
ADediting_453904 | ENST00000556047.1 | chr14_77769448_+ | 266 | -177.40 | -173.40 | -181.70 |
ADediting_453905 | ENST00000556047.1 | chr14_77769475_+ | 293 | -174.80 | -173.40 | -181.70 |
ADediting_453906 | ENST00000556047.1 | chr14_77769487_+ | 305 | -177.40 | -173.40 | -181.70 |
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Relation with ADAR for C14orf178 |
Correlation between ADAR gene expression and RNA editing frequency |
Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
CER | ADediting_1538074 | chr14_77762137_+ | 0.0255463183369809 | 0.182321142285964 | 4.56572105503857e-05 | 0.326435794767062 | 0.0253423528995259 | 0.182570302376721 |
CER | ADediting_1538084 | chr14_77766265_+ | 0.00251669620668684 | 0.244969542974996 | 1.19139455307894e-06 | 0.38444459986137 | 0.0213956248155044 | 0.187766653751053 |
CER | ADediting_1538085 | chr14_77766271_+ | 0.00751090686711367 | 0.217474472858451 | 4.78099516301457e-06 | 0.36365389395574 | 0.00430056312884324 | 0.231882186344711 |
DLPFC | ADediting_453832 | chr14_77762045_+ | 0.123334853837061 | 0.0877042827478613 | 0.433191480798017 | -0.0446717944772369 | 9.50565653784597e-24 | 0.528962777446392 |
TCX | ADediting_453832 | chr14_77762045_+ | 0.248252497791399 | -0.0948538186226629 | 0.0011045828731841 | -0.26384769831432 | 1.35547835730864e-05 | 0.347051505276853 |
CER | ADediting_453834 | chr14_77762148_+ | 0.00308826180173821 | 0.240051540940481 | 1.49855293188187e-06 | 0.381110043818998 | 0.130606014488984 | 0.123991563096295 |
CER | ADediting_453838 | chr14_77762166_+ | 0.00765864553014002 | 0.216955153102085 | 3.33166242825672e-06 | 0.369198097694024 | 0.0181472230941314 | 0.192705871266664 |
DLPFC | ADediting_453839 | chr14_77762192_+ | 0.329725013014986 | 0.0555390435173388 | 0.215573963466022 | -0.0705327531757837 | 4.04292739945682e-10 | 0.34551040737016 |
CER | ADediting_453844 | chr14_77762267_+ | 0.0121694033962132 | 0.204257223266076 | 6.9388583555326e-06 | 0.357825869716722 | 0.0600250916487007 | 0.153922370756424 |
DLPFC | ADediting_453849 | chr14_77762939_+ | 0.861356974050911 | 0.00995927309298222 | 0.0723271762590048 | -0.102211208614299 | 5.68301463374334e-17 | 0.451445185001292 |
DLPFC | ADediting_453855 | chr14_77762994_+ | 0.86656332627351 | 0.00958168795246589 | 0.0418715730401964 | -0.115647702472993 | 2.11910110339566e-13 | 0.400941360371306 |
DLPFC | ADediting_453857 | chr14_77765006_+ | 0.228104853157123 | 0.0686504320089253 | 0.378100070545597 | -0.0502316048819146 | 3.07138413695418e-19 | 0.479632026102415 |
CER | ADediting_453857 | chr14_77765006_+ | 0.00437254502728399 | 0.231465447014916 | 1.75283028872686e-07 | 0.410962797648162 | 0.00769750355169988 | 0.216820039319875 |
CER | ADediting_453858 | chr14_77765069_+ | 0.00341182928380819 | 0.237621635959495 | 2.55050803497843e-05 | 0.336503448602513 | 0.50941799156917 | 0.0542822493175871 |
CER | ADediting_453859 | chr14_77765072_+ | 0.000568608955294019 | 0.278131743508241 | 5.64530280082725e-07 | 0.39505511170527 | 0.195588538772373 | 0.106262307603387 |
CER | ADediting_453860 | chr14_77765103_+ | 0.0296239173332279 | 0.177665651489955 | 5.07157518743771e-06 | 0.362738307062089 | 0.333528116160708 | 0.0794978053328791 |
CER | ADediting_453861 | chr14_77765124_+ | 0.0350357802030401 | 0.172265208090873 | 1.2738825323951e-05 | 0.348067244742779 | 0.0989349346385443 | 0.135236788735586 |
CER | ADediting_453862 | chr14_77765132_+ | 0.027728343844793 | 0.179756960025429 | 4.89625170723408e-05 | 0.325203313369287 | 0.601748261814116 | 0.0429516198325071 |
CER | ADediting_453863 | chr14_77765136_+ | 0.00271805244444642 | 0.243131306110004 | 6.15986362535367e-07 | 0.393834814711376 | 0.646620485340702 | 0.0377356118584588 |
CER | ADediting_453866 | chr14_77765760_+ | 0.00293286906764925 | 0.241301292390198 | 2.70563896549147e-06 | 0.372346954411309 | 0.0152932354463166 | 0.197724692284454 |
CER | ADediting_453869 | chr14_77766209_+ | 0.0340916011011244 | 0.173153941393092 | 1.04783281405574e-05 | 0.35124046709493 | 0.075842181723454 | 0.145400693162013 |
CER | ADediting_453870 | chr14_77766225_+ | 0.00274216117196807 | 0.242919537947474 | 1.19197586956721e-07 | 0.41603178041945 | 0.00139911259690168 | 0.258569352481585 |
CER | ADediting_453873 | chr14_77766244_+ | 0.00678154560615737 | 0.22017942575341 | 5.60902763145159e-06 | 0.361168733848437 | 0.0245071052477469 | 0.183608895992192 |
CER | ADediting_453874 | chr14_77766249_+ | 0.0304115185445336 | 0.176830113083158 | 1.01344854969977e-05 | 0.351779051149499 | 0.020068267692334 | 0.189700857019236 |
CER | ADediting_453875 | chr14_77766257_+ | 0.016510955282924 | 0.195491385624198 | 5.99293873340509e-06 | 0.360132562732703 | 0.0332612361311351 | 0.173952924028138 |
CER | ADediting_453877 | chr14_77766311_+ | 0.0261748842302201 | 0.181563866172261 | 3.5917263978027e-05 | 0.33062707075878 | 0.0117368420081545 | 0.205275038977607 |
CER | ADediting_453878 | chr14_77766317_+ | 0.00271980907708493 | 0.243115818802542 | 4.18796066933005e-07 | 0.399195854315818 | 0.024204626866823 | 0.183992509836374 |
CER | ADediting_453880 | chr14_77767049_+ | 0.0386969574146889 | 0.168999686982429 | 2.0649791705793e-06 | 0.37638640925174 | 0.0915869545065393 | 0.138244187438111 |
CER | ADediting_453881 | chr14_77767055_+ | 0.0765706787440607 | 0.145044361536272 | 4.94257106999027e-05 | 0.325036873595008 | 0.262449174223014 | 0.0920740624170356 |
CER | ADediting_453886 | chr14_77767119_+ | 0.0702908702604488 | 0.148211007197454 | 0.000108001232229095 | 0.310868434202561 | 0.635317695323964 | 0.0390345806917509 |
CER | ADediting_453887 | chr14_77767132_+ | 0.107547380686718 | 0.131928691540535 | 2.19322015780489e-05 | 0.339056685720689 | 0.553027924313562 | 0.048816423464695 |
Correlation between ADAR gene expression and this gene's expression |
Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
DLPFC | 0.000605445491424327 | 0.193698139800528 | 0.899610498467631 | 0.00719400093436997 | 6.75173699215234e-36 | 0.631466140349359 |
TCX | 0.506426072686977 | -0.0546658065368863 | 0.003514627028394 | -0.236893091894364 | 7.865298138078e-05 | 0.316701678861667 |
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Relation with AD stages for C14orf178 |
Correlation between AD stages and RNA editing frequency |
Tissue | ADeditomID | position | P-val | Coeff. |
CER | ADediting_453864 | chr14_77765696_+ | 9.09590500209363e-05 | 0.367584054028918 |
CER | ADediting_453878 | chr14_77766317_+ | 0.00124917357033615 | 0.306609626885388 |
Correlation between AD stages and this gene's expression |
Tissue | P-val | Coeff. |
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RelatedDrugs for C14orf178 |
Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for C14orf178 |
Diseases associated with this gene. (DisGeNet 4.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |