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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited versus non-edited samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with AD stages

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene


Gene summary for TTC9C

check button Gene summary
Gene informationGene symbol

TTC9C

Gene ID

283237

Gene nametetratricopeptide repeat domain 9C
Synonyms-
Cytomap

11q12.3

Type of geneprotein-coding
Descriptiontetratricopeptide repeat protein 9CTPR repeat protein 9C
Modification date20200313
UniProtAcc

Q8N5M4,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

Top

RNA A-to-I events for TTC9C

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_262498(62729737, +), ADediting_262499(62730120, +), ADediting_262500(62730132, +), ADediting_262501(62730137, +), ADediting_262502(62730156, +), ADediting_262503(62730175, +), ADediting_262504(62730214, +), ADediting_262505(62730256, +), ADediting_262506(62730259, +), ADediting_262507(62730262, +), ADediting_262508(62730281, +), ADediting_262509(62730290, +), ADediting_262510(62730337, +), ADediting_262511(62730349, +), ADediting_262512(62730630, +), ADediting_262513(62730635, +), ADediting_262514(62730654, +), ADediting_262515(62730713, +), ADediting_262516(62730756, +), ADediting_262517(62730989, +), ADediting_262518(62731006, +), ADediting_262519(62731069, +), ADediting_262520(62731072, +), ADediting_262521(62731151, +), ADediting_262522(62731432, +), ADediting_262523(62731765, +), ADediting_262524(62731800, +), ADediting_262525(62731821, +), ADediting_262526(62731870, +), ADediting_262527(62731884, +), ADediting_262528(62731947, +), ADediting_262529(62732059, +), ADediting_262530(62732060, +), ADediting_262531(62732076, +), ADediting_262532(62732125, +), ADediting_262533(62732180, +), ADediting_262534(62732202, +), ADediting_262535(62732247, +), ADediting_262536(62732257, +), ADediting_262537(62732354, +), ADediting_262538(62732422, +), ADediting_262539(62732423, +), ADediting_262540(62732489, +), ADediting_262541(62732490, +), ADediting_262542(62732600, +), ADediting_262543(62732601, +), ADediting_262544(62732602, +), ADediting_262545(62732692, +), ADediting_262546(62732696, +), ADediting_262547(62732775, +), ADediting_262548(62732791, +), ADediting_262549(62732801, +), ADediting_262550(62732819, +), ADediting_262551(62732829, +), ADediting_262552(62732843, +), ADediting_262553(62732863, +), ADediting_262554(62732871, +), ADediting_262555(62732879, +), ADediting_262556(62733869, +), ADediting_262557(62733937, +), ADediting_262558(62733941, +), ADediting_262559(62734041, +), ADediting_262560(62734044, +), ADediting_262561(62734079, +), ADediting_262562(62734089, +), ADediting_262563(62734097, +), ADediting_262564(62734102, +), ADediting_262565(62734103, +), ADediting_262566(62734178, +), ADediting_262567(62734204, +), ADediting_262568(62734223, +), ADediting_262569(62734342, +), ADediting_262570(62734429, +), ADediting_262571(62734920, +), ADediting_262572(62734927, +), ADediting_262573(62734945, +), ADediting_262574(62734958, +), ADediting_262575(62734990, +), ADediting_262576(62734997, +), ADediting_262577(62735026, +), ADediting_262578(62735036, +), ADediting_262579(62735069, +), ADediting_262580(62735109, +), ADediting_262581(62735137, +), ADediting_262582(62735156, +), ADediting_262583(62738822, +), ADediting_262584(62738827, +), ADediting_262585(62738835, +), ADediting_262586(62738836, +), ADediting_262587(62738863, +), ADediting_262588(62738871, +), ADediting_262589(62738889, +), ADediting_262590(62738890, +), ADediting_262591(62738901, +), ADediting_262592(62738905, +), ADediting_262593(62738907, +), ADediting_262594(62738913, +), ADediting_262595(62738914, +), ADediting_262596(62738915, +), ADediting_262597(62738926, +), ADediting_262598(62738935, +), ADediting_262599(62738941, +), ADediting_262600(62738944, +), ADediting_262601(62738952, +), ADediting_262602(62738953, +), ADediting_262603(62739018, +), ADediting_262604(62739028, +), ADediting_262605(62739036, +), ADediting_262606(62739037, +), ADediting_262607(62739063, +), ADediting_262608(62739071, +), ADediting_262609(62739086, +), ADediting_262610(62739114, +), ADediting_262611(62739166, +), ADediting_262612(62739174, +), ADediting_262613(62739175, +), ADediting_262614(62739205, +), ADediting_262615(62739242, +), ADediting_262616(62739246, +), ADediting_262617(62739252, +), ADediting_262618(62739266, +), ADediting_262619(62739267, +), ADediting_262620(62739272, +), ADediting_262621(62739282, +), ADediting_262622(62739308, +), ADediting_262623(62739318, +), ADediting_262624(62739349, +), ADediting_262625(62739350, +), ADediting_262626(62739411, +), ADediting_262627(62739454, +), ADediting_262628(62739477, +), ADediting_262629(62739500, +), ADediting_262630(62739518, +), ADediting_262631(62739519, +), ADediting_262632(62739525, +), ADediting_262633(62739530, +), ADediting_262634(62739580, +), ADediting_262635(62739582, +), ADediting_262636(62739642, +), ADediting_262637(62739644, +), ADediting_262638(62739646, +), ADediting_262639(62739648, +), ADediting_262640(62739654, +), ADediting_262641(62739666, +), ADediting_262642(62739697, +), ADediting_262643(62739702, +), ADediting_262644(62739703, +), ADediting_262645(62739716, +), ADediting_262646(62739722, +), ADediting_262647(62739723, +), ADediting_262648(62739740, +), ADediting_262649(62739748, +), ADediting_262650(62739749, +), ADediting_262651(62739752, +), ADediting_262652(62739759, +), ADediting_262653(62739762, +), ADediting_262654(62739764, +), ADediting_262655(62739768, +), ADediting_262656(62739775, +), ADediting_262657(62739778, +), ADediting_262658(62739810, +), ADediting_262659(62739813, +), ADediting_262660(62739815, +), ADediting_262661(62739819, +), ADediting_262662(62739830, +), ADediting_262663(62739839, +), ADediting_262664(62739851, +), ADediting_262665(62739852, +), ADediting_262666(62739865, +), ADediting_262667(62739873, +), ADediting_262668(62739889, +), ADediting_262669(62739890, +), ADediting_262670(62739891, +), ADediting_262671(62739903, +), ADediting_262672(62739912, +), ADediting_1527398(62738844, +), ADediting_1527399(62739095, +), ADediting_1527400(62739180, +), ADediting_1527401(62739218, +), ADediting_1527402(62739263, +), ADediting_1527403(62739331, +), ADediting_1527404(62739499, +), ADediting_1527405(62739548, +), ADediting_1527406(62739744, +), ADediting_1610250(62731063, +), ADediting_1610251(62734730, +), ADediting_1610252(62739244, +),

Top

RNA editing positional annotations for TTC9C using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_262498chr11_62729737_+intronic
ADediting_262499chr11_62730120_+intronic
ADediting_262500chr11_62730132_+intronic
ADediting_262501chr11_62730137_+intronic
ADediting_262502chr11_62730156_+intronic
ADediting_262503chr11_62730175_+intronic
ADediting_262504chr11_62730214_+intronic
ADediting_262505chr11_62730256_+intronic
ADediting_262506chr11_62730259_+intronic
ADediting_262507chr11_62730262_+intronic
ADediting_262508chr11_62730281_+intronic
ADediting_262509chr11_62730290_+intronic
ADediting_262510chr11_62730337_+intronic
ADediting_262511chr11_62730349_+intronic
ADediting_262512chr11_62730630_+intronic
ADediting_262513chr11_62730635_+intronic
ADediting_262514chr11_62730654_+intronic
ADediting_262515chr11_62730713_+intronic
ADediting_262516chr11_62730756_+intronic
ADediting_262517chr11_62730989_+intronic
ADediting_262518chr11_62731006_+intronic
ADediting_262519chr11_62731069_+intronic
ADediting_262520chr11_62731072_+intronic
ADediting_262521chr11_62731151_+intronic
ADediting_262522chr11_62731432_+intronic
ADediting_262523chr11_62731765_+intronic
ADediting_262524chr11_62731800_+intronic
ADediting_262525chr11_62731821_+intronic
ADediting_262526chr11_62731870_+intronic
ADediting_262527chr11_62731884_+intronic
ADediting_262528chr11_62731947_+intronic
ADediting_262529chr11_62732059_+intronic
ADediting_262530chr11_62732060_+intronic
ADediting_262531chr11_62732076_+intronic
ADediting_262532chr11_62732125_+intronic
ADediting_262533chr11_62732180_+intronic
ADediting_262534chr11_62732202_+intronic
ADediting_262535chr11_62732247_+intronic
ADediting_262536chr11_62732257_+intronic
ADediting_262537chr11_62732354_+intronic
ADediting_262538chr11_62732422_+intronic
ADediting_262539chr11_62732423_+intronic
ADediting_262540chr11_62732489_+intronic
ADediting_262541chr11_62732490_+intronic
ADediting_262542chr11_62732600_+intronic
ADediting_262543chr11_62732601_+intronic
ADediting_262544chr11_62732602_+intronic
ADediting_262545chr11_62732692_+intronic
ADediting_262546chr11_62732696_+intronic
ADediting_262547chr11_62732775_+intronic
ADediting_262548chr11_62732791_+intronic
ADediting_262549chr11_62732801_+intronic
ADediting_262550chr11_62732819_+intronic
ADediting_262551chr11_62732829_+intronic
ADediting_262552chr11_62732843_+intronic
ADediting_262553chr11_62732863_+intronic
ADediting_262554chr11_62732871_+intronic
ADediting_262555chr11_62732879_+intronic
ADediting_262556chr11_62733869_+intronic
ADediting_262557chr11_62733937_+intronic
ADediting_262558chr11_62733941_+intronic
ADediting_262559chr11_62734041_+intronic
ADediting_262560chr11_62734044_+intronic
ADediting_262561chr11_62734079_+intronic
ADediting_262562chr11_62734089_+intronic
ADediting_262563chr11_62734097_+intronic
ADediting_262564chr11_62734102_+intronic
ADediting_262565chr11_62734103_+intronic
ADediting_262566chr11_62734178_+intronic
ADediting_262567chr11_62734204_+intronic
ADediting_262568chr11_62734223_+intronic
ADediting_262569chr11_62734342_+intronic
ADediting_262570chr11_62734429_+intronic
ADediting_262571chr11_62734920_+intronic
ADediting_262572chr11_62734927_+intronic
ADediting_262573chr11_62734945_+intronic
ADediting_262574chr11_62734958_+intronic
ADediting_262575chr11_62734990_+intronic
ADediting_262576chr11_62734997_+intronic
ADediting_262577chr11_62735026_+intronic
ADediting_262578chr11_62735036_+intronic
ADediting_262579chr11_62735069_+intronic
ADediting_262580chr11_62735109_+intronic
ADediting_262581chr11_62735137_+intronic
ADediting_262582chr11_62735156_+intronic
ADediting_262583chr11_62738822_+intronic
ADediting_262584chr11_62738827_+intronic
ADediting_262585chr11_62738835_+intronic
ADediting_262586chr11_62738836_+intronic
ADediting_262587chr11_62738863_+intronic
ADediting_262588chr11_62738871_+intronic
ADediting_262589chr11_62738889_+intronic
ADediting_262590chr11_62738890_+intronic
ADediting_262591chr11_62738901_+intronic
ADediting_262592chr11_62738905_+intronic
ADediting_262593chr11_62738907_+intronic
ADediting_262594chr11_62738913_+intronic
ADediting_262595chr11_62738914_+intronic
ADediting_262596chr11_62738915_+intronic
ADediting_262597chr11_62738926_+intronic
ADediting_262598chr11_62738935_+intronic
ADediting_262599chr11_62738941_+intronic
ADediting_262600chr11_62738944_+intronic
ADediting_262601chr11_62738952_+intronic
ADediting_262602chr11_62738953_+intronic
ADediting_262603chr11_62739018_+intronic
ADediting_262604chr11_62739028_+intronic
ADediting_262605chr11_62739036_+intronic
ADediting_262606chr11_62739037_+intronic
ADediting_262607chr11_62739063_+intronic
ADediting_262608chr11_62739071_+intronic
ADediting_262609chr11_62739086_+intronic
ADediting_262610chr11_62739114_+intronic
ADediting_262611chr11_62739166_+intronic
ADediting_262612chr11_62739174_+intronic
ADediting_262613chr11_62739175_+intronic
ADediting_262614chr11_62739205_+intronic
ADediting_262615chr11_62739242_+intronic
ADediting_262616chr11_62739246_+intronic
ADediting_262617chr11_62739252_+intronic
ADediting_262618chr11_62739266_+intronic
ADediting_262619chr11_62739267_+intronic
ADediting_262620chr11_62739272_+intronic
ADediting_262621chr11_62739282_+intronic
ADediting_262622chr11_62739308_+intronic
ADediting_262623chr11_62739318_+intronic
ADediting_262624chr11_62739349_+intronic
ADediting_262625chr11_62739350_+intronic
ADediting_262626chr11_62739411_+intronic
ADediting_262627chr11_62739454_+intronic
ADediting_262628chr11_62739477_+intronic
ADediting_262629chr11_62739500_+intronic
ADediting_262630chr11_62739518_+intronic
ADediting_262631chr11_62739519_+intronic
ADediting_262632chr11_62739525_+intronic
ADediting_262633chr11_62739530_+intronic
ADediting_262634chr11_62739580_+intronic
ADediting_262635chr11_62739582_+intronic
ADediting_262636chr11_62739642_+intronic
ADediting_262637chr11_62739644_+intronic
ADediting_262638chr11_62739646_+intronic
ADediting_262639chr11_62739648_+intronic
ADediting_262640chr11_62739654_+intronic
ADediting_262641chr11_62739666_+intronic
ADediting_262642chr11_62739697_+intronic
ADediting_262643chr11_62739702_+intronic
ADediting_262644chr11_62739703_+intronic
ADediting_262645chr11_62739716_+intronic
ADediting_262646chr11_62739722_+intronic
ADediting_262647chr11_62739723_+intronic
ADediting_262648chr11_62739740_+intronic
ADediting_262649chr11_62739748_+intronic
ADediting_262650chr11_62739749_+intronic
ADediting_262651chr11_62739752_+intronic
ADediting_262652chr11_62739759_+intronic
ADediting_262653chr11_62739762_+intronic
ADediting_262654chr11_62739764_+intronic
ADediting_262655chr11_62739768_+intronic
ADediting_262656chr11_62739775_+intronic
ADediting_262657chr11_62739778_+intronic
ADediting_262658chr11_62739810_+intronic
ADediting_262659chr11_62739813_+intronic
ADediting_262660chr11_62739815_+intronic
ADediting_262661chr11_62739819_+intronic
ADediting_262662chr11_62739830_+intronic
ADediting_262663chr11_62739839_+intronic
ADediting_262664chr11_62739851_+intronic
ADediting_262665chr11_62739852_+intronic
ADediting_262666chr11_62739865_+intronic
ADediting_262667chr11_62739873_+intronic
ADediting_262668chr11_62739889_+intronic
ADediting_262669chr11_62739890_+intronic
ADediting_262670chr11_62739891_+intronic
ADediting_262671chr11_62739903_+intronic
ADediting_262672chr11_62739912_+intronic
ADediting_1527398chr11_62738844_+intronic
ADediting_1527399chr11_62739095_+intronic
ADediting_1527400chr11_62739180_+intronic
ADediting_1527401chr11_62739218_+intronic
ADediting_1527402chr11_62739263_+intronic
ADediting_1527403chr11_62739331_+intronic
ADediting_1527404chr11_62739499_+intronic
ADediting_1527405chr11_62739548_+intronic
ADediting_1527406chr11_62739744_+intronic
ADediting_1610250chr11_62731063_+intronic
ADediting_1610251chr11_62734730_+intronic
ADediting_1610252chr11_62739244_+intronic

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_262498chr11_62729737_+SINEAluName=AluSq
ADediting_262499chr11_62730120_+SINEAluName=AluSq2
ADediting_262500chr11_62730132_+SINEAluName=AluSq2
ADediting_262501chr11_62730137_+SINEAluName=AluSq2
ADediting_262502chr11_62730156_+SINEAluName=AluSq2
ADediting_262503chr11_62730175_+SINEAluName=AluSq2
ADediting_262504chr11_62730214_+SINEAluName=AluSq2
ADediting_262505chr11_62730256_+SINEAluName=AluSq2
ADediting_262506chr11_62730259_+SINEAluName=AluSq2
ADediting_262507chr11_62730262_+SINEAluName=AluSq2
ADediting_262508chr11_62730281_+SINEAluName=AluSq2
ADediting_262509chr11_62730290_+SINEAluName=AluSq2
ADediting_262510chr11_62730337_+SINEAluName=AluSq2
ADediting_262511chr11_62730349_+SINEAluName=AluSq2
ADediting_262512chr11_62730630_+SINEAluName=AluSp
ADediting_262513chr11_62730635_+SINEAluName=AluSp
ADediting_262514chr11_62730654_+SINEAluName=AluSp
ADediting_262515chr11_62730713_+SINEAluName=AluSp
ADediting_262516chr11_62730756_+SINEAluName=AluSp
ADediting_262517chr11_62730989_+SINEAluName=AluSx1
ADediting_262518chr11_62731006_+SINEAluName=AluSx1
ADediting_262519chr11_62731069_+SINEAluName=AluSx1
ADediting_262520chr11_62731072_+SINEAluName=AluSx1
ADediting_262521chr11_62731151_+SINEAluName=AluSx1
ADediting_262522chr11_62731432_+SINEAluName=AluJb
ADediting_262523chr11_62731765_+SINEAluName=AluY
ADediting_262524chr11_62731800_+SINEAluName=AluY
ADediting_262525chr11_62731821_+SINEAluName=AluY
ADediting_262526chr11_62731870_+SINEAluName=AluY
ADediting_262527chr11_62731884_+SINEAluName=AluY
ADediting_262528chr11_62731947_+SINEAluName=AluY
ADediting_262529chr11_62732059_+SINEAluName=AluY
ADediting_262530chr11_62732060_+SINEAluName=AluY
ADediting_262531chr11_62732076_+SINEAluName=AluY
ADediting_262532chr11_62732125_+SINEAluName=AluY
ADediting_262533chr11_62732180_+SINEAluName=AluY
ADediting_262534chr11_62732202_+SINEAluName=AluY
ADediting_262535chr11_62732247_+SINEAluName=AluY
ADediting_262536chr11_62732257_+SINEAluName=AluY
ADediting_262537chr11_62732354_+SINEAluName=AluSp
ADediting_262538chr11_62732422_+SINEAluName=AluSp
ADediting_262539chr11_62732423_+SINEAluName=AluSp
ADediting_262540chr11_62732489_+SINEAluName=AluSp
ADediting_262541chr11_62732490_+SINEAluName=AluSp
ADediting_262542chr11_62732600_+SINEAluName=AluSp
ADediting_262543chr11_62732601_+SINEAluName=AluSp
ADediting_262544chr11_62732602_+SINEAluName=AluSp
ADediting_262545chr11_62732692_+SINEAluName=AluSc8
ADediting_262546chr11_62732696_+SINEAluName=AluSc8
ADediting_262547chr11_62732775_+SINEAluName=AluSc8
ADediting_262548chr11_62732791_+SINEAluName=AluSc8
ADediting_262549chr11_62732801_+SINEAluName=AluSc8
ADediting_262550chr11_62732819_+SINEAluName=AluSc8
ADediting_262551chr11_62732829_+SINEAluName=AluSc8
ADediting_262552chr11_62732843_+SINEAluName=AluSc8
ADediting_262553chr11_62732863_+SINEAluName=AluSc8
ADediting_262554chr11_62732871_+SINEAluName=AluSc8
ADediting_262555chr11_62732879_+SINEAluName=AluSc8
ADediting_262556chr11_62733869_+SINEAluName=AluSg
ADediting_262557chr11_62733937_+SINEAluName=AluSg
ADediting_262558chr11_62733941_+SINEAluName=AluSg
ADediting_262559chr11_62734041_+SINEAluName=AluSx
ADediting_262560chr11_62734044_+SINEAluName=AluSx
ADediting_262561chr11_62734079_+SINEAluName=AluSx
ADediting_262562chr11_62734089_+SINEAluName=AluSx
ADediting_262563chr11_62734097_+SINEAluName=AluSx
ADediting_262564chr11_62734102_+SINEAluName=AluSx
ADediting_262565chr11_62734103_+SINEAluName=AluSx
ADediting_262566chr11_62734178_+SINEAluName=AluSx
ADediting_262567chr11_62734204_+SINEAluName=AluSx
ADediting_262568chr11_62734223_+SINEAluName=AluSx
ADediting_262569chr11_62734342_+SINEAluName=AluSz
ADediting_262570chr11_62734429_+SINEAluName=AluSz
ADediting_262571chr11_62734920_+SINEAluName=AluSp
ADediting_262572chr11_62734927_+SINEAluName=AluSp
ADediting_262573chr11_62734945_+SINEAluName=AluSp
ADediting_262574chr11_62734958_+SINEAluName=AluSp
ADediting_262575chr11_62734990_+SINEAluName=AluSp
ADediting_262576chr11_62734997_+SINEAluName=AluSp
ADediting_262577chr11_62735026_+SINEAluName=AluSp
ADediting_262578chr11_62735036_+SINEAluName=AluSp
ADediting_262579chr11_62735069_+SINEAluName=AluSp
ADediting_262580chr11_62735109_+SINEAluName=AluSp
ADediting_262581chr11_62735137_+SINEAluName=AluSp
ADediting_262582chr11_62735156_+SINEAluName=AluSp
ADediting_262583chr11_62738822_+SINEAluName=AluSx
ADediting_262584chr11_62738827_+SINEAluName=AluSx
ADediting_262585chr11_62738835_+SINEAluName=AluSx
ADediting_262586chr11_62738836_+SINEAluName=AluSx
ADediting_262587chr11_62738863_+SINEAluName=AluSx
ADediting_262588chr11_62738871_+SINEAluName=AluSx
ADediting_262589chr11_62738889_+SINEAluName=AluSx
ADediting_262590chr11_62738890_+SINEAluName=AluSx
ADediting_262591chr11_62738901_+SINEAluName=AluSx
ADediting_262592chr11_62738905_+SINEAluName=AluSx
ADediting_262593chr11_62738907_+SINEAluName=AluSx
ADediting_262594chr11_62738913_+SINEAluName=AluSx
ADediting_262595chr11_62738914_+SINEAluName=AluSx
ADediting_262596chr11_62738915_+SINEAluName=AluSx
ADediting_262597chr11_62738926_+SINEAluName=AluSx
ADediting_262598chr11_62738935_+SINEAluName=AluSx
ADediting_262599chr11_62738941_+SINEAluName=AluSx
ADediting_262600chr11_62738944_+SINEAluName=AluSx
ADediting_262601chr11_62738952_+SINEAluName=AluSx
ADediting_262602chr11_62738953_+SINEAluName=AluSx
ADediting_262603chr11_62739018_+SINEAluName=AluJb
ADediting_262604chr11_62739028_+SINEAluName=AluJb
ADediting_262605chr11_62739036_+SINEAluName=AluJb
ADediting_262606chr11_62739037_+SINEAluName=AluJb
ADediting_262607chr11_62739063_+SINEAluName=AluJb
ADediting_262608chr11_62739071_+SINEAluName=AluJb
ADediting_262609chr11_62739086_+SINEAluName=AluJb
ADediting_262610chr11_62739114_+SINEAluName=AluJb
ADediting_262611chr11_62739166_+SINEAluName=AluYm1
ADediting_262612chr11_62739174_+SINEAluName=AluYm1
ADediting_262613chr11_62739175_+SINEAluName=AluYm1
ADediting_262614chr11_62739205_+SINEAluName=AluYm1
ADediting_262615chr11_62739242_+SINEAluName=AluYm1
ADediting_262616chr11_62739246_+SINEAluName=AluYm1
ADediting_262617chr11_62739252_+SINEAluName=AluYm1
ADediting_262618chr11_62739266_+SINEAluName=AluYm1
ADediting_262619chr11_62739267_+SINEAluName=AluYm1
ADediting_262620chr11_62739272_+SINEAluName=AluYm1
ADediting_262621chr11_62739282_+SINEAluName=AluYm1
ADediting_262622chr11_62739308_+SINEAluName=AluYm1
ADediting_262623chr11_62739318_+SINEAluName=AluYm1
ADediting_262624chr11_62739349_+SINEAluName=AluYm1
ADediting_262625chr11_62739350_+SINEAluName=AluYm1
ADediting_262626chr11_62739411_+SINEAluName=AluYm1
ADediting_262627chr11_62739454_+SINEAluName=AluJb
ADediting_262628chr11_62739477_+SINEAluName=AluJb
ADediting_262629chr11_62739500_+SINEAluName=AluJb
ADediting_262630chr11_62739518_+SINEAluName=AluJb
ADediting_262631chr11_62739519_+SINEAluName=AluJb
ADediting_262632chr11_62739525_+SINEAluName=AluJb
ADediting_262633chr11_62739530_+SINEAluName=AluJb
ADediting_262634chr11_62739580_+SINEAluName=AluJb
ADediting_262635chr11_62739582_+SINEAluName=AluJb
ADediting_262636chr11_62739642_+SINEAluName=AluSz6
ADediting_262637chr11_62739644_+SINEAluName=AluSz6
ADediting_262638chr11_62739646_+SINEAluName=AluSz6
ADediting_262639chr11_62739648_+SINEAluName=AluSz6
ADediting_262640chr11_62739654_+SINEAluName=AluSz6
ADediting_262641chr11_62739666_+SINEAluName=AluSz6
ADediting_262642chr11_62739697_+SINEAluName=AluSz6
ADediting_262643chr11_62739702_+SINEAluName=AluSz6
ADediting_262644chr11_62739703_+SINEAluName=AluSz6
ADediting_262645chr11_62739716_+SINEAluName=AluSz6
ADediting_262646chr11_62739722_+SINEAluName=AluSz6
ADediting_262647chr11_62739723_+SINEAluName=AluSz6
ADediting_262648chr11_62739740_+SINEAluName=AluSz6
ADediting_262649chr11_62739748_+SINEAluName=AluSz6
ADediting_262650chr11_62739749_+SINEAluName=AluSz6
ADediting_262651chr11_62739752_+SINEAluName=AluSz6
ADediting_262652chr11_62739759_+SINEAluName=AluSz6
ADediting_262653chr11_62739762_+SINEAluName=AluSz6
ADediting_262654chr11_62739764_+SINEAluName=AluSz6
ADediting_262655chr11_62739768_+SINEAluName=AluSz6
ADediting_262656chr11_62739775_+SINEAluName=AluSz6
ADediting_262657chr11_62739778_+SINEAluName=AluSz6
ADediting_262658chr11_62739810_+SINEAluName=AluSz6
ADediting_262659chr11_62739813_+SINEAluName=AluSz6
ADediting_262660chr11_62739815_+SINEAluName=AluSz6
ADediting_262661chr11_62739819_+SINEAluName=AluSz6
ADediting_262662chr11_62739830_+SINEAluName=AluSz6
ADediting_262663chr11_62739839_+SINEAluName=AluSz6
ADediting_262664chr11_62739851_+SINEAluName=AluSz6
ADediting_262665chr11_62739852_+SINEAluName=AluSz6
ADediting_262666chr11_62739865_+SINEAluName=AluSz6
ADediting_262667chr11_62739873_+SINEAluName=AluSz6
ADediting_262668chr11_62739889_+SINEAluName=AluSz6
ADediting_262669chr11_62739890_+SINEAluName=AluSz6
ADediting_262670chr11_62739891_+SINEAluName=AluSz6
ADediting_262671chr11_62739903_+SINEAluName=AluSz6
ADediting_262672chr11_62739912_+SINEAluName=AluSz6
ADediting_1527398chr11_62738844_+SINEAluName=AluSx
ADediting_1527399chr11_62739095_+SINEAluName=AluJb
ADediting_1527400chr11_62739180_+SINEAluName=AluYm1
ADediting_1527401chr11_62739218_+SINEAluName=AluYm1
ADediting_1527402chr11_62739263_+SINEAluName=AluYm1
ADediting_1527403chr11_62739331_+SINEAluName=AluYm1
ADediting_1527404chr11_62739499_+SINEAluName=AluJb
ADediting_1527405chr11_62739548_+SINEAluName=AluJb
ADediting_1527406chr11_62739744_+SINEAluName=AluSz6
ADediting_1610250chr11_62731063_+SINEAluName=AluSx1
ADediting_1610251chr11_62734730_+SINEAluName=FLAM_C
ADediting_1610252chr11_62739244_+SINEAluName=AluYm1

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RNA A-to-I editing events in the alternative splicing sites for TTC9C

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TTC9C

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
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check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
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check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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ADeditome IDChrPositoingSkipped exonENSGENSTs

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Protein coding region RNA A-to-I editings for TTC9C

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for TTC9C


check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_843620chr2_207754818_+ENSG00000162222.14ENST00000316461.9TTC9C-202hsa-miR-4775chr1162738464627384707mer-1a6273844662738470142-11.59
ADediting_843620chr2_207754818_+ENSG00000162222.14ENST00000532583.1TTC9C-205hsa-miR-4775chr1162738464627384707mer-1a6273844662738470142-11.59

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TTC9C

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for TTC9C

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFCADediting_262573chr11_62734945_+0.04376506458590650.1146054615870920.95165806382114-0.00345721031631072.59025809112185e-220.51411198082074
DLPFCADediting_262584chr11_62738827_+1.40421175608599e-100.3539398604476661.98967618125330e-110.3688915018348670.2235071208489030.069332315282796
DLPFCADediting_262590chr11_62738890_+7.0123846676685e-070.2773408482543221.89081444741067e-090.3327437428928070.1126487654436650.0902820530427036
DLPFCADediting_262600chr11_62738944_+1.75284738222873e-060.267600258572953.47752103904127e-080.3069079588210160.4466950944464980.0433731543481496
PCCADediting_262601chr11_62738952_+2.325144030216e-090.4152616153957151.90971074263688e-090.4172816628163130.877766414785252-0.0112018541286558
DLPFCADediting_262611chr11_62739166_+0.001531237846190340.1792344187484516.16234740276919e-090.3225540546260920.1484084050348090.0822736447510137
DLPFCADediting_262614chr11_62739205_+0.0005894756542030020.194099743335164.33275151410308e-080.3048531384805290.03415315902479110.120357557999708
TCXADediting_262614chr11_62739205_+0.0008641567496100320.2692184820671461.54405328979982e-050.3449089458324880.979767607800421-0.00208812259335368
DLPFCADediting_262637chr11_62739644_+2.3319503825501e-110.3677054670039631.6336848787146e-150.4318280806896990.03325336425064490.120963999521355
DLPFCADediting_262638chr11_62739646_+3.47279137114391e-050.2328381174772061.16876513310532e-080.3168714522127820.02071629691430110.13133712325448
DLPFCADediting_262640chr11_62739654_+9.29494630620532e-080.2975944004971832.12791469725743e-140.4159286620567360.01164108235123880.14312751240133
CERADediting_262644chr11_62739703_+0.02393265042958270.184340968465150.0001411043217963450.3058543922533780.1079016766600340.131797128892997
DLPFCADediting_262645chr11_62739716_+0.0003839248568687250.2004365483818861.65205228893232e-090.3338844665951810.1797995918623990.0763820555130928
TCXADediting_262645chr11_62739716_+0.002906253848521410.2415213220071153.93266659960646e-060.3666650707439770.0685438756580194-0.149132648416541
DLPFCADediting_262648chr11_62739740_+0.001155974464531740.1837293331275473.85580981718817e-090.3266431491992670.6359919912971780.0269863262140165
DLPFCADediting_262655chr11_62739768_+0.002319187778402760.1723996831364224.07470586722983e-080.3054285591356460.008657544318288220.148875989286643
DLPFCADediting_262659chr11_62739813_+1.24356204165241e-060.2712943763033761.47289097489325e-120.3876850735224870.01245665887368290.14178511257847
DLPFCADediting_262662chr11_62739830_+5.62682345541702e-060.2546180911515314.74329476338629e-110.3623398878354750.03494154029722690.119837276081814
TCXADediting_262662chr11_62739830_+1.7762212029074e-050.3425872088956622.57086200742833e-080.4354090641735490.511821314657241-0.0539749938309091
TCXADediting_262663chr11_62739839_+0.008876364909759520.2129836210208264.0358519118006e-050.3285982332666820.00153188364721049-0.256515937266878
DLPFCADediting_262665chr11_62739852_+0.0003954905222839880.2000041336238813.7639242658532e-090.3268518567951340.03724700294719390.118371023841556
CERADediting_262665chr11_62739852_+0.0008884501950461240.2686173562402112.26141056220571e-050.3385405143960770.345069097905420.0776263189409756
TCXADediting_262665chr11_62739852_+0.09474174539179750.1369303739931427.95182928341036e-060.3556649183842910.00129128582658646-0.260372338365875
DLPFCADediting_262666chr11_62739865_+7.74830491917269e-050.2225395690968321.06012239332244e-080.3177453136375720.04799666515074810.112406578269991
TCXADediting_262666chr11_62739865_+0.003135584252481170.2396822209914531.31876046988566e-060.38297258903610.0138443106977649-0.200593584053639
DLPFCADediting_262670chr11_62739891_+1.79202339066439e-060.2673604902372393.33908333520935e-100.3470537419161460.2716712850328090.0626232964241254

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFC2.82602972387867e-230.5241470797656286.71161635075309e-480.7051011758736550.2848597218618730.0609312833720315
AC7.08766221840825e-740.8584698128025645.90226989441403e-600.8121165645614042.24180208042277e-110.406682124125392
PCC1.0410910211825e-320.7271855421646185.99130473015654e-390.7713708457616860.08956430321421660.123181623894393
CER2.74391469684258e-060.372135466684525.55926504571127e-060.3613079322445240.316508386532244-0.0823349158846588
TCX6.40140468067319e-230.694557338410531.47985703888286e-280.7518066230139060.0568012220293404-0.1558812179659
FP1.52549774566955e-170.5822833319770856.52339666201213e-290.7127569794474610.8179648275449360.0173725660011199
IFG0.0001936951972420050.6783730683360580.00404846052314520.5541593050242140.507896306524594-0.138889872354347
PG6.87141785186e-410.7896407151282571.26144967285066e-290.7081740036299130.240227106837325-0.0865343252171961
STG7.18027687747407e-190.7868535218872052.9234534487372e-170.7638017170546890.669526045025702-0.0472494985085714

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Relation with AD stages for TTC9C

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.

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RelatedDrugs for TTC9C

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for TTC9C

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
TTC9CC0033578Prostatic Neoplasms1CTD_human
TTC9CC0376358Malignant neoplasm of prostate1CTD_human