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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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Gene summary for GM2A |
 Gene summary |
| Gene information | Gene symbol | GM2A | Gene ID | 2760 |
| Gene name | GM2 ganglioside activator | |
| Synonyms | GM2-AP|SAP-3 | |
| Cytomap | 5q33.1 | |
| Type of gene | protein-coding | |
| Description | ganglioside GM2 activatorcerebroside sulfate activator proteinshingolipid activator protein 3sphingolipid activator protein 3 | |
| Modification date | 20200313 | |
| UniProtAcc | P17900, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for GM2A |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_1181227(151268176, +), ADediting_1181228(151268178, +), ADediting_1181229(151268180, +), ADediting_1181230(151268183, +), ADediting_1181231(151268188, +), ADediting_1181232(151268220, +), ADediting_1181233(151268236, +), ADediting_1181234(151268255, +), ADediting_1181235(151268256, +), ADediting_1181236(151268259, +), ADediting_1181237(151268260, +), ADediting_1181238(151268273, +), ADediting_1181239(151268282, +), ADediting_1181240(151268285, +), ADediting_1181241(151268295, +), ADediting_1181242(151268320, +), ADediting_1181243(151268329, +), ADediting_1181244(151268335, +), ADediting_1181245(151268338, +), ADediting_1181246(151268352, +), ADediting_1181247(151268355, +), ADediting_1181248(151268364, +), ADediting_1181249(151268400, +), ADediting_1181250(151268414, +), ADediting_1181251(151268415, +), ADediting_1181252(151268426, +), ADediting_1181253(151268432, +), ADediting_1181254(151268435, +), ADediting_1181255(151268442, +), ADediting_1181256(151268584, +), ADediting_1655541(151268281, +), |
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RNA editing positional annotations for GM2A using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1181227 | chr5_151268176_+ | UTR3 |
| ADediting_1181228 | chr5_151268178_+ | UTR3 |
| ADediting_1181229 | chr5_151268180_+ | UTR3 |
| ADediting_1181230 | chr5_151268183_+ | UTR3 |
| ADediting_1181231 | chr5_151268188_+ | UTR3 |
| ADediting_1181232 | chr5_151268220_+ | UTR3 |
| ADediting_1181233 | chr5_151268236_+ | UTR3 |
| ADediting_1181234 | chr5_151268255_+ | UTR3 |
| ADediting_1181235 | chr5_151268256_+ | UTR3 |
| ADediting_1181236 | chr5_151268259_+ | UTR3 |
| ADediting_1181237 | chr5_151268260_+ | UTR3 |
| ADediting_1181238 | chr5_151268273_+ | UTR3 |
| ADediting_1181239 | chr5_151268282_+ | UTR3 |
| ADediting_1181240 | chr5_151268285_+ | UTR3 |
| ADediting_1181241 | chr5_151268295_+ | UTR3 |
| ADediting_1181242 | chr5_151268320_+ | UTR3 |
| ADediting_1181243 | chr5_151268329_+ | UTR3 |
| ADediting_1181244 | chr5_151268335_+ | UTR3 |
| ADediting_1181245 | chr5_151268338_+ | UTR3 |
| ADediting_1181246 | chr5_151268352_+ | UTR3 |
| ADediting_1181247 | chr5_151268355_+ | UTR3 |
| ADediting_1181248 | chr5_151268364_+ | UTR3 |
| ADediting_1181249 | chr5_151268400_+ | UTR3 |
| ADediting_1181250 | chr5_151268414_+ | UTR3 |
| ADediting_1181251 | chr5_151268415_+ | UTR3 |
| ADediting_1181252 | chr5_151268426_+ | UTR3 |
| ADediting_1181253 | chr5_151268432_+ | UTR3 |
| ADediting_1181254 | chr5_151268435_+ | UTR3 |
| ADediting_1181255 | chr5_151268442_+ | UTR3 |
| ADediting_1181256 | chr5_151268584_+ | UTR3 |
| ADediting_1655541 | chr5_151268281_+ | UTR3 |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1181227 | chr5_151268176_+ | SINE | Alu | Name=AluSc |
| ADediting_1181228 | chr5_151268178_+ | SINE | Alu | Name=AluSc |
| ADediting_1181229 | chr5_151268180_+ | SINE | Alu | Name=AluSc |
| ADediting_1181230 | chr5_151268183_+ | SINE | Alu | Name=AluSc |
| ADediting_1181231 | chr5_151268188_+ | SINE | Alu | Name=AluSc |
| ADediting_1181232 | chr5_151268220_+ | SINE | Alu | Name=AluSc |
| ADediting_1181233 | chr5_151268236_+ | SINE | Alu | Name=AluSc |
| ADediting_1181234 | chr5_151268255_+ | SINE | Alu | Name=AluSc |
| ADediting_1181235 | chr5_151268256_+ | SINE | Alu | Name=AluSc |
| ADediting_1181236 | chr5_151268259_+ | SINE | Alu | Name=AluSc |
| ADediting_1181237 | chr5_151268260_+ | SINE | Alu | Name=AluSc |
| ADediting_1181238 | chr5_151268273_+ | SINE | Alu | Name=AluSc |
| ADediting_1181239 | chr5_151268282_+ | SINE | Alu | Name=AluSc |
| ADediting_1181240 | chr5_151268285_+ | SINE | Alu | Name=AluSc |
| ADediting_1181241 | chr5_151268295_+ | SINE | Alu | Name=AluSc |
| ADediting_1181242 | chr5_151268320_+ | SINE | Alu | Name=AluSc |
| ADediting_1181243 | chr5_151268329_+ | SINE | Alu | Name=AluSc |
| ADediting_1181244 | chr5_151268335_+ | SINE | Alu | Name=AluSc |
| ADediting_1181245 | chr5_151268338_+ | SINE | Alu | Name=AluSc |
| ADediting_1181246 | chr5_151268352_+ | SINE | Alu | Name=AluSc |
| ADediting_1181247 | chr5_151268355_+ | SINE | Alu | Name=AluSc |
| ADediting_1181248 | chr5_151268364_+ | SINE | Alu | Name=AluSc |
| ADediting_1181249 | chr5_151268400_+ | SINE | Alu | Name=AluSc |
| ADediting_1181250 | chr5_151268414_+ | SINE | Alu | Name=AluSc |
| ADediting_1181251 | chr5_151268415_+ | SINE | Alu | Name=AluSc |
| ADediting_1181252 | chr5_151268426_+ | SINE | Alu | Name=AluSc |
| ADediting_1181253 | chr5_151268432_+ | SINE | Alu | Name=AluSc |
| ADediting_1181254 | chr5_151268435_+ | SINE | Alu | Name=AluSc |
| ADediting_1181255 | chr5_151268442_+ | SINE | Alu | Name=AluSc |
| ADediting_1181256 | chr5_151268584_+ | DNA | hAT-Charlie | Name=MER102a |
| ADediting_1655541 | chr5_151268281_+ | SINE | Alu | Name=AluSc |
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RNA A-to-I editing events in the alternative splicing sites for GM2A |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for GM2A |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for GM2A |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for GM2A |
| RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1181227 | chr5_151268176_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-4433b-5p | chr5 | 151268173 | 151268179 | 7mer-m8 | 151268160 | 151268180 | 140 | -10.81 |
| ADediting_1181228 | chr5_151268178_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-5001-3p | chr5 | 151268175 | 151268182 | 8mer-1a | 151268161 | 151268182 | 145 | -15.23 |
| ADediting_1181228 | chr5_151268178_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-6738-3p | chr5 | 151268176 | 151268182 | 7mer-m8 | 151268161 | 151268183 | 146 | -11.57 |
| ADediting_1181229 | chr5_151268180_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-340-3p | chr5 | 151268174 | 151268181 | 8mer-1a | 151268160 | 151268181 | 146 | -18.22 |
| ADediting_1181229 | chr5_151268180_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-6827-3p | chr5 | 151268174 | 151268181 | 8mer-1a | 151268161 | 151268181 | 140 | -14.67 |
| ADediting_1181230 | chr5_151268183_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-3664-5p | chr5 | 151268177 | 151268183 | 7mer-m8 | 151268163 | 151268184 | 153 | -15.28 |
| ADediting_1181230 | chr5_151268183_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-3672 | chr5 | 151268181 | 151268187 | 7mer-m8 | 151268164 | 151268188 | 156 | -15.23 |
| ADediting_1181230 | chr5_151268183_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-4522 | chr5 | 151268178 | 151268184 | 7mer-m8 | 151268165 | 151268185 | 148 | -12.83 |
| ADediting_1181230 | chr5_151268183_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-6864-3p | chr5 | 151268181 | 151268187 | 7mer-m8 | 151268167 | 151268188 | 153 | -17.84 |
| ADediting_1181232 | chr5_151268220_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-3130-3p | chr5 | 151268213 | 151268219 | 7mer-m8 | 151268199 | 151268220 | 146 | -18.52 |
| ADediting_1181232 | chr5_151268220_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-3672 | chr5 | 151268218 | 151268224 | 7mer-m8 | 151268202 | 151268225 | 142 | -13.16 |
| ADediting_1181232 | chr5_151268220_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-6864-3p | chr5 | 151268218 | 151268224 | 7mer-m8 | 151268206 | 151268225 | 149 | -18.45 |
| ADediting_1181232 | chr5_151268220_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-873-3p | chr5 | 151268217 | 151268224 | 8mer-1a | 151268202 | 151268224 | 145 | -18.9 |
| ADediting_1181233 | chr5_151268236_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-17-3p | chr5 | 151268229 | 151268235 | 7mer-m8 | 151268214 | 151268236 | 155 | -20.97 |
| ADediting_1181233 | chr5_151268236_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-485-5p | chr5 | 151268233 | 151268239 | 7mer-m8 | 151268217 | 151268240 | 156 | -17.89 |
| ADediting_1181233 | chr5_151268236_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-6884-5p | chr5 | 151268233 | 151268239 | 7mer-m8 | 151268217 | 151268240 | 162 | -26.06 |
| ADediting_1181237 | chr5_151268260_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-146a-5p | chr5 | 151268258 | 151268264 | 7mer-m8 | 151268241 | 151268265 | 151 | -20.69 |
| ADediting_1181237 | chr5_151268260_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-146b-5p | chr5 | 151268258 | 151268264 | 7mer-m8 | 151268239 | 151268265 | 152 | -22.2 |
| ADediting_1181237 | chr5_151268260_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-7153-5p | chr5 | 151268258 | 151268264 | 7mer-m8 | 151268243 | 151268265 | 145 | -17.7 |
| ADediting_1181238 | chr5_151268273_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-6089 | chr5 | 151268271 | 151268277 | 7mer-m8 | 151268255 | 151268278 | 164 | -37.08 |
| ADediting_1181240 | chr5_151268285_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-3614-5p | chr5 | 151268278 | 151268284 | 7mer-m8 | 151268262 | 151268285 | 152 | -25.27 |
| ADediting_1181241 | chr5_151268295_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-17-3p | chr5 | 151268291 | 151268297 | 7mer-m8 | 151268276 | 151268298 | 166 | -23.43 |
| ADediting_1181241 | chr5_151268295_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-455-3p | chr5 | 151268288 | 151268294 | 7mer-m8 | 151268275 | 151268295 | 142 | -19.39 |
| ADediting_1181242 | chr5_151268320_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-34a-3p | chr5 | 151268316 | 151268322 | 7mer-m8 | 151268302 | 151268323 | 140 | -8.35 |
| ADediting_1181243 | chr5_151268329_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-8485 | chr5 | 151268323 | 151268329 | 7mer-m8 | 151268310 | 151268330 | 142 | -9.85 |
| ADediting_1181247 | chr5_151268355_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-433-5p | chr5 | 151268349 | 151268355 | 7mer-m8 | 151268333 | 151268356 | 159 | -23.87 |
| ADediting_1181250 | chr5_151268414_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-2276-3p | chr5 | 151268407 | 151268414 | 8mer-1a | 151268395 | 151268414 | 155 | -23.39 |
| ADediting_1181250 | chr5_151268414_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-3194-3p | chr5 | 151268410 | 151268416 | 7mer-m8 | 151268395 | 151268417 | 141 | -17.01 |
| ADediting_1181251 | chr5_151268415_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-6841-3p | chr5 | 151268409 | 151268415 | 7mer-m8 | 151268396 | 151268416 | 140 | -13.31 |
| ADediting_1181254 | chr5_151268435_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-4641 | chr5 | 151268430 | 151268436 | 7mer-m8 | 151268412 | 151268437 | 160 | -20.35 |
| ADediting_1181254 | chr5_151268435_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-663b | chr5 | 151268433 | 151268439 | 7mer-m8 | 151268423 | 151268440 | 150 | -27.97 |
| ADediting_1181254 | chr5_151268435_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-6872-3p | chr5 | 151268428 | 151268434 | 7mer-m8 | 151268415 | 151268435 | 145 | -27.48 |
| ADediting_1181255 | chr5_151268442_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-143-5p | chr5 | 151268438 | 151268444 | 7mer-m8 | 151268424 | 151268445 | 168 | -27.76 |
| ADediting_1181255 | chr5_151268442_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-5693 | chr5 | 151268435 | 151268441 | 7mer-m8 | 151268420 | 151268442 | 151 | -24.46 |
| ADediting_1181256 | chr5_151268584_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-2114-5p | chr5 | 151268582 | 151268588 | 7mer-m8 | 151268568 | 151268589 | 147 | -20.89 |
| ADediting_1181256 | chr5_151268584_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-4722-3p | chr5 | 151268578 | 151268584 | 7mer-m8 | 151268564 | 151268585 | 142 | -17.84 |
| ADediting_1181256 | chr5_151268584_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-6727-3p | chr5 | 151268578 | 151268584 | 7mer-m8 | 151268566 | 151268585 | 151 | -21.94 |
| ADediting_1181256 | chr5_151268584_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-6752-3p | chr5 | 151268579 | 151268586 | 8mer-1a | 151268565 | 151268586 | 155 | -24.19 |
| ADediting_1655541 | chr5_151268281_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-6771-5p | chr5 | 151268275 | 151268281 | 7mer-m8 | 151268263 | 151268282 | 160 | -34.33 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1181227 | chr5_151268176_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-371b-5p | chr5 | 151268170 | 151268177 | 8mer-1a | 151268156 | 151268177 | 146 | -13.72 |
| ADediting_1181227 | chr5_151268176_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-373-5p | chr5 | 151268170 | 151268177 | 8mer-1a | 151268156 | 151268177 | 142 | -14.4 |
| ADediting_1181227 | chr5_151268176_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-616-5p | chr5 | 151268170 | 151268177 | 8mer-1a | 151268156 | 151268177 | 140 | -9.79 |
| ADediting_1181228 | chr5_151268178_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-4743-3p | chr5 | 151268176 | 151268182 | 7mer-m8 | 151268163 | 151268183 | 146 | -11.81 |
| ADediting_1181228 | chr5_151268178_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-6888-3p | chr5 | 151268175 | 151268182 | 8mer-1a | 151268162 | 151268182 | 151 | -14.21 |
| ADediting_1181229 | chr5_151268180_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-4743-3p | chr5 | 151268176 | 151268182 | 7mer-m8 | 151268163 | 151268183 | 146 | -11.81 |
| ADediting_1181229 | chr5_151268180_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-6888-3p | chr5 | 151268175 | 151268182 | 8mer-1a | 151268162 | 151268182 | 151 | -14.21 |
| ADediting_1181230 | chr5_151268183_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-4743-3p | chr5 | 151268176 | 151268182 | 7mer-m8 | 151268163 | 151268183 | 146 | -11.81 |
| ADediting_1181231 | chr5_151268188_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-3609 | chr5 | 151268185 | 151268191 | 7mer-m8 | 151268170 | 151268192 | 143 | -15.75 |
| ADediting_1181231 | chr5_151268188_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-520g-3p | chr5 | 151268186 | 151268192 | 7mer-m8 | 151268168 | 151268193 | 148 | -13.56 |
| ADediting_1181231 | chr5_151268188_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-520h | chr5 | 151268186 | 151268192 | 7mer-m8 | 151268170 | 151268193 | 147 | -13.36 |
| ADediting_1181231 | chr5_151268188_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-548ah-5p | chr5 | 151268185 | 151268191 | 7mer-m8 | 151268172 | 151268192 | 145 | -9.15 |
| ADediting_1181232 | chr5_151268220_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-25-3p | chr5 | 151268214 | 151268220 | 7mer-m8 | 151268196 | 151268221 | 153 | -24.46 |
| ADediting_1181232 | chr5_151268220_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-32-5p | chr5 | 151268214 | 151268220 | 7mer-m8 | 151268199 | 151268221 | 144 | -12.85 |
| ADediting_1181232 | chr5_151268220_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-363-3p | chr5 | 151268214 | 151268220 | 7mer-m8 | 151268195 | 151268221 | 149 | -19.28 |
| ADediting_1181232 | chr5_151268220_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-5186 | chr5 | 151268217 | 151268224 | 8mer-1a | 151268204 | 151268224 | 140 | -9.7 |
| ADediting_1181232 | chr5_151268220_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-92b-3p | chr5 | 151268214 | 151268220 | 7mer-m8 | 151268196 | 151268221 | 155 | -23.12 |
| ADediting_1181233 | chr5_151268236_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-6086 | chr5 | 151268233 | 151268239 | 7mer-m8 | 151268219 | 151268240 | 145 | -22.26 |
| ADediting_1181236 | chr5_151268259_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-219b-3p | chr5 | 151268256 | 151268262 | 7mer-m8 | 151268243 | 151268263 | 153 | -18.56 |
| ADediting_1181236 | chr5_151268259_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-302f | chr5 | 151268255 | 151268261 | 7mer-m8 | 151268246 | 151268262 | 145 | -8.67 |
| ADediting_1181237 | chr5_151268260_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-219b-3p | chr5 | 151268256 | 151268262 | 7mer-m8 | 151268243 | 151268263 | 153 | -18.56 |
| ADediting_1181237 | chr5_151268260_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-302f | chr5 | 151268255 | 151268261 | 7mer-m8 | 151268246 | 151268262 | 145 | -8.67 |
| ADediting_1181238 | chr5_151268273_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-4478 | chr5 | 151268270 | 151268276 | 7mer-m8 | 151268262 | 151268277 | 149 | -25.05 |
| ADediting_1181238 | chr5_151268273_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-4649-3p | chr5 | 151268267 | 151268273 | 7mer-m8 | 151268254 | 151268274 | 140 | -14.11 |
| ADediting_1181238 | chr5_151268273_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-7160-5p | chr5 | 151268268 | 151268274 | 7mer-m8 | 151268255 | 151268275 | 147 | -20.02 |
| ADediting_1181239 | chr5_151268282_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-12126 | chr5 | 151268277 | 151268284 | 8mer-1a | 151268261 | 151268284 | 147 | -13.23 |
| ADediting_1181239 | chr5_151268282_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-887-5p | chr5 | 151268275 | 151268281 | 7mer-m8 | 151268263 | 151268282 | 143 | -19.73 |
| ADediting_1181245 | chr5_151268338_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-3675-3p | chr5 | 151268336 | 151268342 | 7mer-m8 | 151268321 | 151268343 | 146 | -12.58 |
| ADediting_1181245 | chr5_151268338_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-4684-5p | chr5 | 151268335 | 151268341 | 7mer-m8 | 151268321 | 151268342 | 153 | -15.31 |
| ADediting_1181248 | chr5_151268364_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-3190-5p | chr5 | 151268358 | 151268364 | 7mer-m8 | 151268346 | 151268365 | 147 | -18.34 |
| ADediting_1181248 | chr5_151268364_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-548s | chr5 | 151268357 | 151268363 | 7mer-m8 | 151268343 | 151268364 | 143 | -12.53 |
| ADediting_1181249 | chr5_151268400_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-12114 | chr5 | 151268396 | 151268402 | 7mer-m8 | 151268382 | 151268403 | 151 | -24.64 |
| ADediting_1181249 | chr5_151268400_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-4520-3p | chr5 | 151268393 | 151268399 | 7mer-m8 | 151268382 | 151268400 | 155 | -23.8 |
| ADediting_1181249 | chr5_151268400_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-4761-5p | chr5 | 151268398 | 151268404 | 7mer-m8 | 151268384 | 151268405 | 150 | -15.04 |
| ADediting_1181249 | chr5_151268400_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-8071 | chr5 | 151268395 | 151268401 | 7mer-m8 | 151268381 | 151268402 | 145 | -19.94 |
| ADediting_1181250 | chr5_151268414_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-450b-5p | chr5 | 151268408 | 151268414 | 7mer-m8 | 151268394 | 151268415 | 140 | -8.11 |
| ADediting_1181251 | chr5_151268415_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-450b-5p | chr5 | 151268408 | 151268414 | 7mer-m8 | 151268394 | 151268415 | 140 | -8.11 |
| ADediting_1181253 | chr5_151268432_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-6514-3p | chr5 | 151268425 | 151268431 | 7mer-m8 | 151268412 | 151268432 | 146 | -16.37 |
| ADediting_1181253 | chr5_151268432_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-6847-3p | chr5 | 151268430 | 151268436 | 7mer-m8 | 151268418 | 151268437 | 153 | -21.57 |
| ADediting_1181254 | chr5_151268435_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-6847-3p | chr5 | 151268430 | 151268436 | 7mer-m8 | 151268418 | 151268437 | 153 | -21.57 |
| ADediting_1181255 | chr5_151268442_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-6772-5p | chr5 | 151268440 | 151268447 | 8mer-1a | 151268424 | 151268447 | 153 | -23.59 |
| ADediting_1181256 | chr5_151268584_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-1915-5p | chr5 | 151268579 | 151268586 | 8mer-1a | 151268565 | 151268586 | 145 | -19.3 |
| ADediting_1181256 | chr5_151268584_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-502-5p | chr5 | 151268580 | 151268586 | 7mer-m8 | 151268567 | 151268587 | 153 | -17.5 |
| ADediting_1655541 | chr5_151268281_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-12126 | chr5 | 151268277 | 151268284 | 8mer-1a | 151268261 | 151268284 | 147 | -13.23 |
| ADediting_1655541 | chr5_151268281_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-30b-3p | chr5 | 151268274 | 151268281 | 8mer-1a | 151268260 | 151268281 | 151 | -15.38 |
| ADediting_1655541 | chr5_151268281_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-3689a-3p | chr5 | 151268274 | 151268281 | 8mer-1a | 151268261 | 151268281 | 147 | -18.72 |
| ADediting_1655541 | chr5_151268281_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-3689b-3p | chr5 | 151268274 | 151268281 | 8mer-1a | 151268261 | 151268281 | 147 | -17.55 |
| ADediting_1655541 | chr5_151268281_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-3689c | chr5 | 151268274 | 151268281 | 8mer-1a | 151268261 | 151268281 | 147 | -17.55 |
| ADediting_1655541 | chr5_151268281_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-6779-5p | chr5 | 151268274 | 151268281 | 8mer-1a | 151268263 | 151268281 | 148 | -22.58 |
| ADediting_1655541 | chr5_151268281_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-6780a-5p | chr5 | 151268274 | 151268281 | 8mer-1a | 151268258 | 151268281 | 152 | -25.37 |
| ADediting_1655541 | chr5_151268281_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-887-5p | chr5 | 151268275 | 151268281 | 7mer-m8 | 151268263 | 151268282 | 143 | -19.73 |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337757 | chr7_5495852_- | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-589-3p | chr5 | 151268051 | 151268057 | 7mer-m8 | 151268031 | 151268058 | 143 | -23.56 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-589-3p | chr5 | 151270067 | 151270073 | 7mer-m8 | 151270051 | 151270074 | 144 | -11.7 |
| ADediting_1471004 | chr9_63819627_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-4477b | chr5 | 151269771 | 151269777 | 7mer-m8 | 151269757 | 151269778 | 168 | -16.81 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000196743.9 | ENST00000523004.1 | GM2A-202 | hsa-miR-641 | chr5 | 151267006 | 151267012 | 7mer-m8 | 151266989 | 151267013 | 144 | -16.78 |
| ADediting_1596844 | chr1_162342605_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-556-3p | chr5 | 151268641 | 151268647 | 7mer-m8 | 151268627 | 151268648 | 159 | -10 |
| ADediting_286380 | chr11_79422188_- | ENSG00000196743.9 | ENST00000523004.1 | GM2A-202 | hsa-miR-5579-3p | chr5 | 151267021 | 151267027 | 7mer-m8 | 151267009 | 151267028 | 156 | -20.17 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-4775 | chr5 | 151267586 | 151267592 | 7mer-m8 | 151267572 | 151267593 | 154 | -9.04 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-4775 | chr5 | 151269480 | 151269486 | 7mer-m8 | 151269463 | 151269487 | 159 | -14.73 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-4775 | chr5 | 151270390 | 151270397 | 8mer-1a | 151270375 | 151270397 | 153 | -8.98 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_291761 | chr11_93733708_- | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-1304-3p | chr5 | 151267563 | 151267569 | 7mer-m8 | 151267549 | 151267570 | 155 | -18.28 |
| ADediting_496066 | chr15_66496985_- | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-4512 | chr5 | 151268296 | 151268302 | 7mer-m8 | 151268282 | 151268303 | 140 | -19.14 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000196743.9 | ENST00000357164.4 | GM2A-201 | hsa-miR-4775 | chr5 | 151269605 | 151269612 | 8mer-1a | 151269591 | 151269612 | 142 | -6.56 |
| Differentially expressed gene-miRNA network |
| Differentially expressed mRNA-miRNA network |
 |
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The effects of the RNA editing to the stability of the RNA structures for GM2A |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000357164.4 | protein_coding |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_1181227 | ENST00000357164.4 | chr5_151268176_+ | 1339 | -1157.10 | -1158.00 | -1203.40 |
| ADediting_1181228 | ENST00000357164.4 | chr5_151268178_+ | 1341 | -1157.40 | -1158.00 | -1203.40 |
| ADediting_1181229 | ENST00000357164.4 | chr5_151268180_+ | 1343 | -1157.30 | -1158.00 | -1203.40 |
| ADediting_1181230 | ENST00000357164.4 | chr5_151268183_+ | 1346 | -1164.20 | -1158.00 | -1203.40 |
| ADediting_1181231 | ENST00000357164.4 | chr5_151268188_+ | 1351 | -1157.60 | -1158.00 | -1203.40 |
| ADediting_1181232 | ENST00000357164.4 | chr5_151268220_+ | 1383 | -1158.90 | -1158.00 | -1203.40 |
| ADediting_1181233 | ENST00000357164.4 | chr5_151268236_+ | 1399 | -1158.40 | -1158.00 | -1203.40 |
| ADediting_1181234 | ENST00000357164.4 | chr5_151268255_+ | 1418 | -1158.00 | -1158.00 | -1203.40 |
| ADediting_1181235 | ENST00000357164.4 | chr5_151268256_+ | 1419 | -1159.90 | -1158.00 | -1203.40 |
| ADediting_1181236 | ENST00000357164.4 | chr5_151268259_+ | 1422 | -1158.00 | -1158.00 | -1203.40 |
| ADediting_1181237 | ENST00000357164.4 | chr5_151268260_+ | 1423 | -1158.00 | -1158.00 | -1203.40 |
| ADediting_1181238 | ENST00000357164.4 | chr5_151268273_+ | 1436 | -1157.60 | -1158.00 | -1203.40 |
| ADediting_1655541 | ENST00000357164.4 | chr5_151268281_+ | 1444 | -1158.80 | -1158.00 | -1203.40 |
| ADediting_1181239 | ENST00000357164.4 | chr5_151268282_+ | 1445 | -1159.40 | -1158.00 | -1203.40 |
| ADediting_1181240 | ENST00000357164.4 | chr5_151268285_+ | 1448 | -1159.80 | -1158.00 | -1203.40 |
| ADediting_1181241 | ENST00000357164.4 | chr5_151268295_+ | 1458 | -1159.80 | -1158.00 | -1203.40 |
| ADediting_1181242 | ENST00000357164.4 | chr5_151268320_+ | 1483 | -1158.00 | -1158.00 | -1203.40 |
| ADediting_1181243 | ENST00000357164.4 | chr5_151268329_+ | 1492 | -1158.00 | -1158.00 | -1203.40 |
| ADediting_1181244 | ENST00000357164.4 | chr5_151268335_+ | 1498 | -1158.20 | -1158.00 | -1203.40 |
| ADediting_1181245 | ENST00000357164.4 | chr5_151268338_+ | 1501 | -1161.80 | -1158.00 | -1203.40 |
| ADediting_1181246 | ENST00000357164.4 | chr5_151268352_+ | 1515 | -1160.40 | -1158.00 | -1203.40 |
| ADediting_1181247 | ENST00000357164.4 | chr5_151268355_+ | 1518 | -1158.00 | -1158.00 | -1203.40 |
| ADediting_1181248 | ENST00000357164.4 | chr5_151268364_+ | 1527 | -1157.20 | -1158.00 | -1203.40 |
| ADediting_1181249 | ENST00000357164.4 | chr5_151268400_+ | 1563 | -1157.30 | -1158.00 | -1203.40 |
| ADediting_1181250 | ENST00000357164.4 | chr5_151268414_+ | 1577 | -1158.40 | -1158.00 | -1203.40 |
| ADediting_1181251 | ENST00000357164.4 | chr5_151268415_+ | 1578 | -1160.60 | -1158.00 | -1203.40 |
| ADediting_1181252 | ENST00000357164.4 | chr5_151268426_+ | 1589 | -1158.00 | -1158.00 | -1203.40 |
| ADediting_1181253 | ENST00000357164.4 | chr5_151268432_+ | 1595 | -1158.80 | -1158.00 | -1203.40 |
| ADediting_1181254 | ENST00000357164.4 | chr5_151268435_+ | 1598 | -1159.50 | -1158.00 | -1203.40 |
| ADediting_1181255 | ENST00000357164.4 | chr5_151268442_+ | 1605 | -1158.00 | -1158.00 | -1203.40 |
| ADediting_1181256 | ENST00000357164.4 | chr5_151268584_+ | 1747 | -1162.10 | -1158.00 | -1203.40 |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for GM2A |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| STG | ADediting_1181227 | chr5_151268176_+ | 0.0241765045781221 | 0.245861065813447 | 0.974793670553569 | 0.00349991569418141 | 0.00135216090536833 | 0.344072588388025 |
| STG | ADediting_1181231 | chr5_151268188_+ | 0.518398403131052 | -0.0714447117664709 | 0.346236640432203 | -0.10405102413537 | 0.000113101957577192 | 0.408792142979477 |
| IFG | ADediting_1181232 | chr5_151268220_+ | 0.725489821457745 | 0.0739142288104368 | 0.84525808925268 | 0.0411233868486525 | 0.0325373323967055 | 0.428611654269673 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 2.01529591677307e-16 | 0.444199150493958 | 5.85216379433173e-05 | 0.22619513140727 | 4.20754147663056e-57 | 0.74942395880562 |
| AC | 2.26415781070147e-56 | 0.797594248829348 | 1.32751608240128e-29 | 0.63479559016246 | 1.2260971188117e-27 | 0.617179352017548 |
| PCC | 9.4056745542301e-14 | 0.504954586814306 | 5.61952842590629e-09 | 0.406036481753283 | 3.42558597616477e-10 | 0.434371173466035 |
| CER | 5.36836304236492e-33 | 0.78808947842151 | 7.67871814669844e-12 | 0.521617082397865 | 8.40855886288638e-07 | 0.389441099479298 |
| TCX | 2.58738073065071e-05 | 0.33625944813093 | 0.00184514886481962 | -0.252249601152107 | 4.60274381295482e-26 | 0.72824684135003 |
| FP | 2.14803173924532e-07 | 0.376932496541266 | 0.202304783025932 | 0.0960217510458716 | 4.79239811495367e-17 | 0.574886300435194 |
| IFG | 0.17246853116849 | 0.281721539766319 | 0.809153325912806 | 0.0508771880349108 | 0.00651808853550284 | 0.52925703104243 |
| PG | 4.61332232315071e-32 | 0.728603197467334 | 5.90426689510875e-08 | 0.384722355964776 | 0.000101815377476362 | 0.281080324798495 |
| STG | 3.17510878870104e-07 | 0.52377886729775 | 0.154961295678065 | 0.156564501206501 | 1.63148883041686e-09 | 0.599929328406058 |
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Relation with AD stages for GM2A |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| IFG | ADediting_1181240 | chr5_151268285_+ | 0.0101710240935886 | 0.504192037998449 |
| IFG | ADediting_1181241 | chr5_151268295_+ | 0.0369228251309597 | 0.419335013487521 |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| CER | 0.0013421617306009 | 0.3047468976491 |
| TCX | 5.7075667682216e-06 | 0.424658645283389 |
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RelatedDrugs for GM2A |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
| GM2A | P17900 | DB02325 | Isopropyl alcohol | Ganglioside GM2 activator | small molecule | approved|investigational |
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RelatedDiseases for GM2A |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
| GM2A | C0268275 | Tay-Sachs Disease, AB Variant | 3 | CTD_human;ORPHANET;UNIPROT |
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