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Center for Computational Systems Medicine
Soverview

Gene summary

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RNA A-to-I events

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Differntial gene expression between RNA A-to-I edited versus non-edited samples

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Protein coding region RNA A-to-I editings

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The effects of the RNA editing to the miRNA binding sites

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The effects of the RNA editing to the stability of the RNA structures

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Relation with ADAR

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Relation with AD stages

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Related drugs with this gene

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Related diseases with this gene


Gene summary for POLM

check button Gene summary
Gene informationGene symbol

POLM

Gene ID

27434

Gene nameDNA polymerase mu
SynonymsPol Mu|Tdt-N
Cytomap

7p13

Type of geneprotein-coding
DescriptionDNA-directed DNA/RNA polymerase muPol iotapolymerase (DNA) mupolymerase (DNA-directed), muterminal transferase
Modification date20200313
UniProtAcc

Q9NP87,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for POLM

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
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check button RNA A-to-I editing events in AD.
ADediting_1332873(44075124, -), ADediting_1332874(44075153, -), ADediting_1332875(44075162, -), ADediting_1332876(44075179, -), ADediting_1332877(44075188, -), ADediting_1332878(44075189, -), ADediting_1332879(44075199, -), ADediting_1332880(44075215, -), ADediting_1332881(44075269, -), ADediting_1332882(44075772, -), ADediting_1332883(44075787, -), ADediting_1332884(44075847, -), ADediting_1332885(44075848, -), ADediting_1332886(44075850, -), ADediting_1332887(44075867, -), ADediting_1332888(44075877, -), ADediting_1332889(44075892, -), ADediting_1332890(44075903, -), ADediting_1332891(44075921, -), ADediting_1332892(44075957, -), ADediting_1332893(44075958, -), ADediting_1332894(44075966, -), ADediting_1332895(44075971, -), ADediting_1332896(44075990, -), ADediting_1332897(44076018, -), ADediting_1332898(44078201, -), ADediting_1332899(44078218, -), ADediting_1332900(44078219, -), ADediting_1332901(44078244, -), ADediting_1332902(44078245, -), ADediting_1332903(44078252, -), ADediting_1332904(44078260, -), ADediting_1332905(44078270, -), ADediting_1332906(44078297, -), ADediting_1332907(44078298, -), ADediting_1332908(44078326, -), ADediting_1332909(44078338, -), ADediting_1332910(44078342, -), ADediting_1332911(44078344, -), ADediting_1332912(44078347, -), ADediting_1332913(44078354, -), ADediting_1332914(44078366, -), ADediting_1332915(44078371, -), ADediting_1332916(44078382, -), ADediting_1332917(44078383, -), ADediting_1332918(44078384, -), ADediting_1332919(44078409, -), ADediting_1332920(44078430, -), ADediting_1332921(44078460, -), ADediting_1332922(44078464, -), ADediting_1587519(44075072, -), ADediting_1587520(44075089, -), ADediting_1587521(44075123, -), ADediting_1587522(44075147, -), ADediting_1587523(44075277, -), ADediting_1587524(44075750, -), ADediting_1587525(44075854, -), ADediting_1587526(44075885, -), ADediting_1587527(44075932, -), ADediting_1587528(44075989, -), ADediting_1587529(44076003, -), ADediting_1587530(44078259, -), ADediting_1587531(44078440, -),

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RNA editing positional annotations for POLM using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_1332873chr7_44075124_-intronic
ADediting_1332874chr7_44075153_-intronic
ADediting_1332875chr7_44075162_-intronic
ADediting_1332876chr7_44075179_-intronic
ADediting_1332877chr7_44075188_-intronic
ADediting_1332878chr7_44075189_-intronic
ADediting_1332879chr7_44075199_-intronic
ADediting_1332880chr7_44075215_-intronic
ADediting_1332881chr7_44075269_-intronic
ADediting_1332882chr7_44075772_-intronic
ADediting_1332883chr7_44075787_-intronic
ADediting_1332884chr7_44075847_-intronic
ADediting_1332885chr7_44075848_-intronic
ADediting_1332886chr7_44075850_-intronic
ADediting_1332887chr7_44075867_-intronic
ADediting_1332888chr7_44075877_-intronic
ADediting_1332889chr7_44075892_-intronic
ADediting_1332890chr7_44075903_-intronic
ADediting_1332891chr7_44075921_-intronic
ADediting_1332892chr7_44075957_-intronic
ADediting_1332893chr7_44075958_-intronic
ADediting_1332894chr7_44075966_-intronic
ADediting_1332895chr7_44075971_-intronic
ADediting_1332896chr7_44075990_-intronic
ADediting_1332897chr7_44076018_-intronic
ADediting_1332898chr7_44078201_-intronic
ADediting_1332899chr7_44078218_-intronic
ADediting_1332900chr7_44078219_-intronic
ADediting_1332901chr7_44078244_-intronic
ADediting_1332902chr7_44078245_-intronic
ADediting_1332903chr7_44078252_-intronic
ADediting_1332904chr7_44078260_-intronic
ADediting_1332905chr7_44078270_-intronic
ADediting_1332906chr7_44078297_-intronic
ADediting_1332907chr7_44078298_-intronic
ADediting_1332908chr7_44078326_-UTR3
ADediting_1332909chr7_44078338_-UTR3
ADediting_1332910chr7_44078342_-UTR3
ADediting_1332911chr7_44078344_-UTR3
ADediting_1332912chr7_44078347_-UTR3
ADediting_1332913chr7_44078354_-UTR3
ADediting_1332914chr7_44078366_-UTR3
ADediting_1332915chr7_44078371_-UTR3
ADediting_1332916chr7_44078382_-UTR3
ADediting_1332917chr7_44078383_-UTR3
ADediting_1332918chr7_44078384_-UTR3
ADediting_1332919chr7_44078409_-UTR3
ADediting_1332920chr7_44078430_-UTR3
ADediting_1332921chr7_44078460_-intronic
ADediting_1332922chr7_44078464_-intronic
ADediting_1587519chr7_44075072_-intronic
ADediting_1587520chr7_44075089_-intronic
ADediting_1587521chr7_44075123_-intronic
ADediting_1587522chr7_44075147_-intronic
ADediting_1587523chr7_44075277_-intronic
ADediting_1587524chr7_44075750_-intronic
ADediting_1587525chr7_44075854_-intronic
ADediting_1587526chr7_44075885_-intronic
ADediting_1587527chr7_44075932_-intronic
ADediting_1587528chr7_44075989_-intronic
ADediting_1587529chr7_44076003_-intronic
ADediting_1587530chr7_44078259_-intronic
ADediting_1587531chr7_44078440_-splicing

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_1332873chr7_44075124_-SINEAluName=AluSq
ADediting_1332874chr7_44075153_-SINEAluName=AluSq
ADediting_1332875chr7_44075162_-SINEAluName=AluSq
ADediting_1332876chr7_44075179_-SINEAluName=AluSq
ADediting_1332877chr7_44075188_-SINEAluName=AluSq
ADediting_1332878chr7_44075189_-SINEAluName=AluSq
ADediting_1332879chr7_44075199_-SINEAluName=AluSq
ADediting_1332880chr7_44075215_-SINEAluName=AluSq
ADediting_1332881chr7_44075269_-SINEAluName=AluSq
ADediting_1332882chr7_44075772_-SINEAluName=AluJb
ADediting_1332883chr7_44075787_-SINEAluName=AluJb
ADediting_1332884chr7_44075847_-SINEAluName=AluJb
ADediting_1332885chr7_44075848_-SINEAluName=AluJb
ADediting_1332886chr7_44075850_-SINEAluName=AluJb
ADediting_1332887chr7_44075867_-SINEAluName=AluJb
ADediting_1332888chr7_44075877_-SINEAluName=AluJb
ADediting_1332889chr7_44075892_-SINEAluName=AluJb
ADediting_1332890chr7_44075903_-SINEAluName=AluJb
ADediting_1332891chr7_44075921_-SINEAluName=AluJb
ADediting_1332892chr7_44075957_-SINEAluName=AluJb
ADediting_1332893chr7_44075958_-SINEAluName=AluJb
ADediting_1332894chr7_44075966_-SINEAluName=AluJb
ADediting_1332895chr7_44075971_-SINEAluName=AluJb
ADediting_1332896chr7_44075990_-SINEAluName=AluJb
ADediting_1332897chr7_44076018_-SINEAluName=AluJb
ADediting_1332898chr7_44078201_-SINEAluName=AluJr
ADediting_1332899chr7_44078218_-SINEAluName=AluJr
ADediting_1332900chr7_44078219_-SINEAluName=AluJr
ADediting_1332901chr7_44078244_-SINEAluName=AluJr
ADediting_1332902chr7_44078245_-SINEAluName=AluJr
ADediting_1332903chr7_44078252_-SINEAluName=AluJr
ADediting_1332904chr7_44078260_-SINEAluName=AluJr
ADediting_1332905chr7_44078270_-SINEAluName=AluJr
ADediting_1332906chr7_44078297_-SINEAluName=AluJr
ADediting_1332907chr7_44078298_-SINEAluName=AluJr
ADediting_1332908chr7_44078326_-SINEAluName=AluJr
ADediting_1332909chr7_44078338_-SINEAluName=AluJr
ADediting_1332910chr7_44078342_-SINEAluName=AluJr
ADediting_1332911chr7_44078344_-SINEAluName=AluJr
ADediting_1332912chr7_44078347_-SINEAluName=AluJr
ADediting_1332913chr7_44078354_-SINEAluName=AluJr
ADediting_1332914chr7_44078366_-SINEAluName=AluJr
ADediting_1332915chr7_44078371_-SINEAluName=AluJr
ADediting_1332916chr7_44078382_-SINEAluName=AluJr
ADediting_1332917chr7_44078383_-SINEAluName=AluJr
ADediting_1332918chr7_44078384_-SINEAluName=AluJr
ADediting_1332919chr7_44078409_-SINEAluName=AluJr
ADediting_1332920chr7_44078430_-SINEAluName=AluJr
ADediting_1332921chr7_44078460_-SINEAluName=AluJr
ADediting_1332922chr7_44078464_-SINEAluName=AluJr
ADediting_1587519chr7_44075072_-SINEAluName=AluSq
ADediting_1587520chr7_44075089_-SINEAluName=AluSq
ADediting_1587521chr7_44075123_-SINEAluName=AluSq
ADediting_1587522chr7_44075147_-SINEAluName=AluSq
ADediting_1587523chr7_44075277_-SINEAluName=AluSq
ADediting_1587524chr7_44075750_-SINEAluName=AluJb
ADediting_1587525chr7_44075854_-SINEAluName=AluJb
ADediting_1587526chr7_44075885_-SINEAluName=AluJb
ADediting_1587527chr7_44075932_-SINEAluName=AluJb
ADediting_1587528chr7_44075989_-SINEAluName=AluJb
ADediting_1587529chr7_44076003_-SINEAluName=AluJb
ADediting_1587530chr7_44078259_-SINEAluName=AluJr
ADediting_1587531chr7_44078440_-SINEAluName=AluJr

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RNA A-to-I editing events in the alternative splicing sites for POLM

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for POLM

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
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check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
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check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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ADeditome IDChrPositoingSkipped exonENSGENSTs

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Protein coding region RNA A-to-I editings for POLM

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for POLM


check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1556067chr19_40282625_-ENSG00000122678.17ENST00000242248.10POLM-201hsa-miR-641chr744072642440726498mer-1a4407264244072665149-15.32
ADediting_1556067chr19_40282625_-ENSG00000122678.17ENST00000242248.10POLM-201hsa-miR-641chr744072928440729347mer-1a4407292844072952141-16.28
ADediting_1556067chr19_40282625_-ENSG00000122678.17ENST00000242248.10POLM-201hsa-miR-641chr744073224440732307mer-m84407322344073246140-13.48
ADediting_1556067chr19_40282625_-ENSG00000122678.17ENST00000335195.10POLM-202hsa-miR-641chr744072642440726498mer-1a4407264244072665149-15.32
ADediting_1556067chr19_40282625_-ENSG00000122678.17ENST00000335195.10POLM-202hsa-miR-641chr744072928440729347mer-1a4407292844072952141-16.28
ADediting_1556067chr19_40282625_-ENSG00000122678.17ENST00000335195.10POLM-202hsa-miR-641chr744073224440732307mer-m84407322344073246140-13.48
ADediting_1556067chr19_40282625_-ENSG00000122678.17ENST00000395831.7POLM-203hsa-miR-641chr744072642440726498mer-1a4407264244072665149-15.32
ADediting_1556067chr19_40282625_-ENSG00000122678.17ENST00000395831.7POLM-203hsa-miR-641chr744072928440729347mer-1a4407292844072952141-16.28
ADediting_496066chr15_66496985_-ENSG00000122678.17ENST00000242248.10POLM-201hsa-miR-4512chr744072489440724957mer-m84407248844072509158-22.47
ADediting_496066chr15_66496985_-ENSG00000122678.17ENST00000335195.10POLM-202hsa-miR-4512chr744072489440724957mer-m84407248844072509158-22.47
ADediting_496066chr15_66496985_-ENSG00000122678.17ENST00000395831.7POLM-203hsa-miR-4512chr744072489440724957mer-m84407248844072509158-22.47

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1643790chr3_121049689_+ENSG00000122678.17ENST00000242248.10POLM-201hsa-miR-5682chr744072126440721327mer-m84407212544072146142-17.75

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for POLM

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for POLM

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
CERADediting_1332893chr7_44075958_-4.21763755577825e-060.3655901135987755.71865159732625e-060.3608661706942160.1255867830999270.125620896082518
CERADediting_1332894chr7_44075966_-8.6104147819046e-060.3543957135859421.50717695488311e-060.3810261479056690.7682269272095710.0242611546317877
DLPFCADediting_1332910chr7_44078342_-0.2316322577232020.0681338657083210.389797646016617-0.04901246804916916.37347269653634e-150.423500520473283
TCXADediting_1332910chr7_44078342_-0.632902642519460.03931337187874960.575441188459842-0.04608963657208731.68130823885489e-050.34349962335534
DLPFCADediting_1332911chr7_44078344_-0.2433502858413660.06645666623555490.507963332538081-0.03773883171572645.82289423229426e-130.39410418361936
TCXADediting_1332911chr7_44078344_-0.856301157195814-0.01490939962225230.147480530020738-0.1188431910180242.78166595813466e-060.371929603883341
CERADediting_1332913chr7_44078354_-0.004540273225565140.2305177698435913.63252049652012e-050.3304311571995710.6311533601853060.039515586423768
TCXADediting_1332913chr7_44078354_-0.3436059973951370.07786135664294480.127488929810218-0.1249976255742432.90215691111322e-070.404205977143898
DLPFCADediting_1332914chr7_44078366_-0.1008359927299380.0933654925762910.9744016748725010.001829880808639019.98957325999988e-120.373984326362208
TCXADediting_1332914chr7_44078366_-0.1498665929145960.1181518883975440.136326380486219-0.1221922306231372.76192473427732e-070.404876289253356
TCXADediting_1332915chr7_44078371_-0.09552264910986430.136610538015860.271167823466107-0.09041763482406799.78547745403887e-070.387276739329457
CERADediting_1332919chr7_44078409_-0.006750471321821350.2203003207551920.0001521075046571750.304429858383470.1697545776290850.112689668662901
DLPFCADediting_1332920chr7_44078430_-0.0144919491476770.1387454114906320.936497162297591-0.004543465748486917.18939527661615e-170.450112269919777
CERADediting_1332920chr7_44078430_-1.84907658529842e-050.3419175148864097.60078202006666e-060.3563826911097380.467213986356680.0598080519775658
TCXADediting_1332920chr7_44078430_-0.3808437297807690.07206283938242920.579337586041227-0.04562075900731333.71106565322131e-060.367553346340671
CERADediting_1587528chr7_44075989_-4.34363476716425e-060.3651366383716791.85976113285885e-070.4101769396967440.1025115044312230.133836510848094

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFC1.08680999700055e-190.4849435425438061.03111456462969e-190.4852100621676083.76726336458905e-280.570397633360184
AC9.09478535523853e-180.5074658384896771.87681154123941e-100.388917536291877.36385755849429e-310.645485207653211
PCC3.90536546025112e-080.3847247367827535.820278373344e-060.3213510000420536.0644392203332e-100.428795590843578
CER5.34355060503124e-080.4263181544385170.01094105590675310.2072367941378150.639225661882495-0.0385843853656674
TCX1.26749820474534e-050.3481492911504780.479733823977463-0.05814186608023387.39772248593082e-180.628404957986143
FP4.64915280925147e-090.4215042145945060.01038831503024330.1916435732876474.67563529387492e-160.559590131737003
IFG0.01364135646492920.4865913111886780.02050544030093110.4605817120229880.007648433713379220.520460260138465
PG0.884487217249870.01072467879972120.693240528589161-0.02911343229098029.40881399471163e-140.510810142223488
STG0.08404176563520110.1896345630933160.745293915063566-0.03597166015279047.94415750931777e-070.50835859022822

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Relation with AD stages for POLM

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.
CERADediting_1332877chr7_44075188_-0.0009776369390340070.312879218276371

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.
TCX2.76984514798375e-070.474495586602943

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RelatedDrugs for POLM

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for POLM

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource