ADeditome: functional annotation of RNA A-to-I editing in AD

Gene summary for GBGT1

Gene summary

Gene information	Gene symbol	GBGT1
	Gene ID	26301
	Gene name	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)
	Synonyms	A3GALNT\|FS\|UNQ2513
	Cytomap	9q34.2
	Type of gene	protein-coding
	Description	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1Forssman blood groupForssman glycolipid synthetase (FS)forssman glycolipid synthase-like protein
	Modification date	20200313
	UniProtAcc	Q8N5D6,
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for GBGT1

RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).

RNA editing frequencies across three data sets.

The number of RNA A-to-I editing events in different types of transcripts (# event, percentage).

RNA A-to-I editing events in AD.

ADediting_1454316(133156417, -), ADediting_1454317(133156573, -), ADediting_1454318(133156574, -), ADediting_1454319(133156577, -), ADediting_1454320(133156621, -), ADediting_1454321(133156782, -), ADediting_1454322(133156855, -), ADediting_1454323(133156858, -), ADediting_1454324(133157014, -), ADediting_1454325(133157149, -), ADediting_1454326(133157172, -), ADediting_1454327(133157175, -), ADediting_1454328(133157176, -), ADediting_1454329(133157201, -), ADediting_1454330(133157224, -), ADediting_1454331(133157243, -), ADediting_1454332(133157877, -), ADediting_1454333(133157890, -), ADediting_1454334(133157902, -), ADediting_1454335(133157903, -), ADediting_1454336(133157904, -), ADediting_1454337(133157965, -), ADediting_1454338(133157976, -), ADediting_1454339(133158021, -), ADediting_1454340(133158036, -), ADediting_1454341(133158037, -), ADediting_1454342(133158045, -), ADediting_1454343(133158062, -), ADediting_1454344(133158077, -), ADediting_1454345(133158220, -), ADediting_1454346(133158262, -), ADediting_1454347(133158316, -), ADediting_1454348(133158317, -), ADediting_1454349(133158351, -), ADediting_1454350(133158363, -), ADediting_1454351(133158371, -), ADediting_1454352(133158376, -), ADediting_1454353(133158403, -), ADediting_1454354(133158446, -), ADediting_1454355(133158447, -), ADediting_1454356(133158502, -), ADediting_1454357(133158503, -), ADediting_1454358(133158511, -), ADediting_1454359(133158526, -), ADediting_1454360(133158530, -), ADediting_1454361(133158539, -), ADediting_1454362(133158548, -), ADediting_1454363(133158556, -), ADediting_1454364(133158570, -), ADediting_1454365(133158574, -), ADediting_1454366(133158575, -), ADediting_1454367(133158579, -), ADediting_1454368(133159013, -), ADediting_1454369(133159021, -), ADediting_1454370(133159023, -), ADediting_1454371(133159028, -), ADediting_1454372(133159029, -), ADediting_1454373(133159033, -), ADediting_1454374(133159037, -), ADediting_1454375(133159039, -), ADediting_1454376(133159044, -), ADediting_1454377(133159045, -), ADediting_1454378(133159053, -), ADediting_1454379(133159063, -), ADediting_1454380(133159066, -), ADediting_1454381(133159067, -), ADediting_1454382(133159072, -), ADediting_1454383(133159076, -), ADediting_1454384(133159082, -), ADediting_1454385(133159089, -), ADediting_1454386(133159093, -), ADediting_1454387(133159099, -), ADediting_1454388(133159129, -), ADediting_1454389(133159131, -), ADediting_1454390(133159134, -), ADediting_1454391(133159136, -), ADediting_1454392(133159137, -), ADediting_1454393(133159142, -), ADediting_1454394(133159143, -), ADediting_1454395(133159149, -), ADediting_1454396(133159154, -), ADediting_1454397(133159155, -), ADediting_1454398(133159156, -), ADediting_1454399(133159174, -), ADediting_1454400(133159177, -), ADediting_1454401(133159179, -), ADediting_1454402(133159180, -), ADediting_1454403(133159185, -), ADediting_1454404(133159188, -), ADediting_1454405(133159193, -), ADediting_1454406(133159217, -), ADediting_1454407(133159225, -), ADediting_1454408(133159233, -), ADediting_1454409(133159234, -), ADediting_1454410(133159250, -), ADediting_1454411(133159619, -), ADediting_1454412(133159675, -), ADediting_1454413(133159681, -), ADediting_1454414(133159685, -), ADediting_1454415(133159714, -), ADediting_1454416(133159735, -), ADediting_1454417(133159737, -), ADediting_1454418(133159740, -), ADediting_1454419(133159745, -), ADediting_1454420(133160031, -), ADediting_1454421(133160032, -), ADediting_1454422(133160033, -), ADediting_1454423(133160110, -), ADediting_1454424(133160115, -), ADediting_1454425(133160118, -), ADediting_1454426(133160120, -), ADediting_1454427(133160121, -), ADediting_1454428(133160124, -), ADediting_1454429(133160127, -), ADediting_1454430(133160133, -), ADediting_1454431(133160157, -), ADediting_1454432(133160175, -), ADediting_1454433(133160179, -), ADediting_1454434(133160186, -), ADediting_1454435(133160192, -), ADediting_1454436(133160193, -), ADediting_1454437(133160196, -), ADediting_1454438(133160197, -), ADediting_1454439(133160210, -), ADediting_1454440(133160216, -), ADediting_1454441(133160217, -), ADediting_1454442(133160227, -), ADediting_1454443(133160243, -), ADediting_1454444(133160246, -), ADediting_1454445(133160775, -), ADediting_1454446(133160807, -), ADediting_1454447(133160901, -), ADediting_1593020(133156774, -), ADediting_1593021(133156786, -), ADediting_1593022(133156790, -), ADediting_1593023(133156809, -), ADediting_1593024(133156810, -), ADediting_1593025(133156823, -), ADediting_1593026(133156826, -), ADediting_1593027(133156827, -), ADediting_1593028(133156854, -), ADediting_1593029(133156872, -), ADediting_1593030(133157101, -), ADediting_1593031(133157111, -), ADediting_1593032(133157118, -), ADediting_1593033(133157136, -), ADediting_1593034(133157160, -), ADediting_1593035(133157232, -), ADediting_1593036(133158497, -), ADediting_1593037(133158534, -), ADediting_1593038(133159162, -), ADediting_1593039(133159528, -), ADediting_1593040(133159586, -), ADediting_1593041(133159625, -), ADediting_1593042(133159688, -), ADediting_1593043(133159702, -), ADediting_1593044(133159791, -), ADediting_1593045(133160020, -), ADediting_1593046(133160167, -), ADediting_1593047(133160222, -), ADediting_1593048(133160753, -),

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RNA editing positional annotations for GBGT1 using Annovar

Protein coding RNA editing(s).

ADeditome ID	Position	Variant type	ENST	NTchange	AAchange	SIFT_score	Polyphen2_HVAR_score	PROVEAN_pred
ADediting_1454432	chr9_133160175_-	nonsynonymous SNV	ENST00000644196.1	c.A214G	p.T72A	0.0	.	-0.37
ADediting_1454432	chr9_133160175_-	nonsynonymous SNV	ENST00000372036.4	c.A214G	p.T72A	0.0	.	-0.37
ADediting_1454433	chr9_133160179_-	synonymous SNV	ENST00000644196.1	c.A210G	p.S70S	.	.	.
ADediting_1454433	chr9_133160179_-	synonymous SNV	ENST00000372036.4	c.A210G	p.S70S	.	.	.
ADediting_1454434	chr9_133160186_-	nonsynonymous SNV	ENST00000644196.1	c.A203G	p.H68R	0.0	.	-1.04
ADediting_1454434	chr9_133160186_-	nonsynonymous SNV	ENST00000372036.4	c.A203G	p.H68R	0.0	.	-1.04
ADediting_1454435	chr9_133160192_-	nonsynonymous SNV	ENST00000644196.1	c.A197G	p.N66S	0.0	.	-1.75
ADediting_1454435	chr9_133160192_-	nonsynonymous SNV	ENST00000372036.4	c.A197G	p.N66S	0.0	.	-1.75
ADediting_1454436	chr9_133160193_-	nonsynonymous SNV	ENST00000644196.1	c.A196G	p.N66D	0.0	.	0.88
ADediting_1454436	chr9_133160193_-	nonsynonymous SNV	ENST00000372036.4	c.A196G	p.N66D	0.0	.	0.88
ADediting_1454437	chr9_133160196_-	nonsynonymous SNV	ENST00000644196.1	c.A193G	p.S65G	0.0	.	-3.18
ADediting_1454437	chr9_133160196_-	nonsynonymous SNV	ENST00000372036.4	c.A193G	p.S65G	0.0	.	-3.18
ADediting_1454438	chr9_133160197_-	synonymous SNV	ENST00000644196.1	c.A192G	p.S64S	.	.	.
ADediting_1454438	chr9_133160197_-	synonymous SNV	ENST00000372036.4	c.A192G	p.S64S	.	.	.
ADediting_1454439	chr9_133160210_-	nonsynonymous SNV	ENST00000644196.1	c.A179G	p.H60R	0.0	.	-3.0
ADediting_1454439	chr9_133160210_-	nonsynonymous SNV	ENST00000372036.4	c.A179G	p.H60R	0.0	.	-3.0
ADediting_1454440	chr9_133160216_-	nonsynonymous SNV	ENST00000644196.1	c.A173G	p.N58S	0.0	.	-2.73
ADediting_1454440	chr9_133160216_-	nonsynonymous SNV	ENST00000372036.4	c.A173G	p.N58S	0.0	.	-2.73
ADediting_1454441	chr9_133160217_-	nonsynonymous SNV	ENST00000644196.1	c.A172G	p.N58D	0.0	.	-3.46
ADediting_1454441	chr9_133160217_-	nonsynonymous SNV	ENST00000372036.4	c.A172G	p.N58D	0.0	.	-3.46
ADediting_1454442	chr9_133160227_-	synonymous SNV	ENST00000644196.1	c.A162G	p.S54S	.	.	.
ADediting_1454442	chr9_133160227_-	synonymous SNV	ENST00000372036.4	c.A162G	p.S54S	.	.	.
ADediting_1454443	chr9_133160243_-	nonsynonymous SNV	ENST00000644196.1	c.A146G	p.Y49C	0.0	.	-0.16
ADediting_1454443	chr9_133160243_-	nonsynonymous SNV	ENST00000372036.4	c.A146G	p.Y49C	0.0	.	-0.16
ADediting_1454444	chr9_133160246_-	nonsynonymous SNV	ENST00000644196.1	c.A143G	p.E48G	0.013	.	-4.23
ADediting_1454444	chr9_133160246_-	nonsynonymous SNV	ENST00000372036.4	c.A143G	p.E48G	0.013	.	-4.23
ADediting_1593047	chr9_133160222_-	nonsynonymous SNV	ENST00000644196.1	c.A167G	p.H56R	0.0	.	-6.03
ADediting_1593047	chr9_133160222_-	nonsynonymous SNV	ENST00000372036.4	c.A167G	p.H56R	0.0	.	-6.03

Gene structure information of RNA editing(s).

ADeditome ID	Position	Variant type
ADediting_1454316	chr9_133156417_-	intronic
ADediting_1454317	chr9_133156573_-	intronic
ADediting_1454318	chr9_133156574_-	intronic
ADediting_1454319	chr9_133156577_-	intronic
ADediting_1454320	chr9_133156621_-	intronic
ADediting_1454321	chr9_133156782_-	intronic
ADediting_1454322	chr9_133156855_-	intronic
ADediting_1454323	chr9_133156858_-	intronic
ADediting_1454324	chr9_133157014_-	intronic
ADediting_1454325	chr9_133157149_-	intronic
ADediting_1454326	chr9_133157172_-	intronic
ADediting_1454327	chr9_133157175_-	intronic
ADediting_1454328	chr9_133157176_-	intronic
ADediting_1454329	chr9_133157201_-	intronic
ADediting_1454330	chr9_133157224_-	intronic
ADediting_1454331	chr9_133157243_-	intronic
ADediting_1454332	chr9_133157877_-	intronic
ADediting_1454333	chr9_133157890_-	intronic
ADediting_1454334	chr9_133157902_-	intronic
ADediting_1454335	chr9_133157903_-	intronic
ADediting_1454336	chr9_133157904_-	intronic
ADediting_1454337	chr9_133157965_-	intronic
ADediting_1454338	chr9_133157976_-	intronic
ADediting_1454339	chr9_133158021_-	intronic
ADediting_1454340	chr9_133158036_-	intronic
ADediting_1454341	chr9_133158037_-	intronic
ADediting_1454342	chr9_133158045_-	intronic
ADediting_1454343	chr9_133158062_-	intronic
ADediting_1454344	chr9_133158077_-	intronic
ADediting_1454345	chr9_133158220_-	intronic
ADediting_1454346	chr9_133158262_-	intronic
ADediting_1454347	chr9_133158316_-	intronic
ADediting_1454348	chr9_133158317_-	intronic
ADediting_1454349	chr9_133158351_-	intronic
ADediting_1454350	chr9_133158363_-	intronic
ADediting_1454351	chr9_133158371_-	intronic
ADediting_1454352	chr9_133158376_-	intronic
ADediting_1454353	chr9_133158403_-	intronic
ADediting_1454354	chr9_133158446_-	intronic
ADediting_1454355	chr9_133158447_-	intronic
ADediting_1454356	chr9_133158502_-	intronic
ADediting_1454357	chr9_133158503_-	intronic
ADediting_1454358	chr9_133158511_-	intronic
ADediting_1454359	chr9_133158526_-	intronic
ADediting_1454360	chr9_133158530_-	intronic
ADediting_1454361	chr9_133158539_-	intronic
ADediting_1454362	chr9_133158548_-	intronic
ADediting_1454363	chr9_133158556_-	intronic
ADediting_1454364	chr9_133158570_-	intronic
ADediting_1454365	chr9_133158574_-	intronic
ADediting_1454366	chr9_133158575_-	intronic
ADediting_1454367	chr9_133158579_-	intronic
ADediting_1454368	chr9_133159013_-	intronic
ADediting_1454369	chr9_133159021_-	intronic
ADediting_1454370	chr9_133159023_-	intronic
ADediting_1454371	chr9_133159028_-	intronic
ADediting_1454372	chr9_133159029_-	intronic
ADediting_1454373	chr9_133159033_-	intronic
ADediting_1454374	chr9_133159037_-	intronic
ADediting_1454375	chr9_133159039_-	intronic
ADediting_1454376	chr9_133159044_-	intronic
ADediting_1454377	chr9_133159045_-	intronic
ADediting_1454378	chr9_133159053_-	intronic
ADediting_1454379	chr9_133159063_-	intronic
ADediting_1454380	chr9_133159066_-	intronic
ADediting_1454381	chr9_133159067_-	intronic
ADediting_1454382	chr9_133159072_-	intronic
ADediting_1454383	chr9_133159076_-	intronic
ADediting_1454384	chr9_133159082_-	intronic
ADediting_1454385	chr9_133159089_-	intronic
ADediting_1454386	chr9_133159093_-	intronic
ADediting_1454387	chr9_133159099_-	intronic
ADediting_1454388	chr9_133159129_-	intronic
ADediting_1454389	chr9_133159131_-	intronic
ADediting_1454390	chr9_133159134_-	intronic
ADediting_1454391	chr9_133159136_-	intronic
ADediting_1454392	chr9_133159137_-	intronic
ADediting_1454393	chr9_133159142_-	intronic
ADediting_1454394	chr9_133159143_-	intronic
ADediting_1454395	chr9_133159149_-	intronic
ADediting_1454396	chr9_133159154_-	intronic
ADediting_1454397	chr9_133159155_-	intronic
ADediting_1454398	chr9_133159156_-	intronic
ADediting_1454399	chr9_133159174_-	intronic
ADediting_1454400	chr9_133159177_-	intronic
ADediting_1454401	chr9_133159179_-	intronic
ADediting_1454402	chr9_133159180_-	intronic
ADediting_1454403	chr9_133159185_-	intronic
ADediting_1454404	chr9_133159188_-	intronic
ADediting_1454405	chr9_133159193_-	intronic
ADediting_1454406	chr9_133159217_-	intronic
ADediting_1454407	chr9_133159225_-	intronic
ADediting_1454408	chr9_133159233_-	intronic
ADediting_1454409	chr9_133159234_-	intronic
ADediting_1454410	chr9_133159250_-	intronic
ADediting_1454411	chr9_133159619_-	intronic
ADediting_1454412	chr9_133159675_-	intronic
ADediting_1454413	chr9_133159681_-	intronic
ADediting_1454414	chr9_133159685_-	intronic
ADediting_1454415	chr9_133159714_-	intronic
ADediting_1454416	chr9_133159735_-	intronic
ADediting_1454417	chr9_133159737_-	intronic
ADediting_1454418	chr9_133159740_-	intronic
ADediting_1454419	chr9_133159745_-	intronic
ADediting_1454420	chr9_133160031_-	UTR3
ADediting_1454421	chr9_133160032_-	UTR3
ADediting_1454422	chr9_133160033_-	UTR3
ADediting_1454423	chr9_133160110_-	UTR3
ADediting_1454424	chr9_133160115_-	UTR3
ADediting_1454425	chr9_133160118_-	UTR3
ADediting_1454426	chr9_133160120_-	UTR3
ADediting_1454427	chr9_133160121_-	UTR3
ADediting_1454428	chr9_133160124_-	UTR3
ADediting_1454429	chr9_133160127_-	UTR3
ADediting_1454430	chr9_133160133_-	UTR3
ADediting_1454431	chr9_133160157_-	UTR3
ADediting_1454432	chr9_133160175_-	exonic
ADediting_1454433	chr9_133160179_-	exonic
ADediting_1454434	chr9_133160186_-	exonic
ADediting_1454435	chr9_133160192_-	exonic
ADediting_1454436	chr9_133160193_-	exonic
ADediting_1454437	chr9_133160196_-	exonic
ADediting_1454438	chr9_133160197_-	exonic
ADediting_1454439	chr9_133160210_-	exonic
ADediting_1454440	chr9_133160216_-	exonic
ADediting_1454441	chr9_133160217_-	exonic
ADediting_1454442	chr9_133160227_-	exonic
ADediting_1454443	chr9_133160243_-	exonic
ADediting_1454444	chr9_133160246_-	exonic
ADediting_1454445	chr9_133160775_-	intronic
ADediting_1454446	chr9_133160807_-	intronic
ADediting_1454447	chr9_133160901_-	intronic
ADediting_1593020	chr9_133156774_-	intronic
ADediting_1593021	chr9_133156786_-	intronic
ADediting_1593022	chr9_133156790_-	intronic
ADediting_1593023	chr9_133156809_-	intronic
ADediting_1593024	chr9_133156810_-	intronic
ADediting_1593025	chr9_133156823_-	intronic
ADediting_1593026	chr9_133156826_-	intronic
ADediting_1593027	chr9_133156827_-	intronic
ADediting_1593028	chr9_133156854_-	intronic
ADediting_1593029	chr9_133156872_-	intronic
ADediting_1593030	chr9_133157101_-	intronic
ADediting_1593031	chr9_133157111_-	intronic
ADediting_1593032	chr9_133157118_-	intronic
ADediting_1593033	chr9_133157136_-	intronic
ADediting_1593034	chr9_133157160_-	intronic
ADediting_1593035	chr9_133157232_-	intronic
ADediting_1593036	chr9_133158497_-	intronic
ADediting_1593037	chr9_133158534_-	intronic
ADediting_1593038	chr9_133159162_-	intronic
ADediting_1593039	chr9_133159528_-	intronic
ADediting_1593040	chr9_133159586_-	intronic
ADediting_1593041	chr9_133159625_-	intronic
ADediting_1593042	chr9_133159688_-	intronic
ADediting_1593043	chr9_133159702_-	intronic
ADediting_1593044	chr9_133159791_-	intronic
ADediting_1593045	chr9_133160020_-	UTR3
ADediting_1593046	chr9_133160167_-	UTR3
ADediting_1593047	chr9_133160222_-	exonic
ADediting_1593048	chr9_133160753_-	intronic

Repat-regional RNA editing(s).

ADeditome ID	Position	Repeat family	Repeat sub family	Repeat name
ADediting_1454316	chr9_133156417_-	SINE	Alu	Name=AluSg7
ADediting_1454317	chr9_133156573_-	SINE	Alu	Name=AluSg7
ADediting_1454318	chr9_133156574_-	SINE	Alu	Name=AluSg7
ADediting_1454319	chr9_133156577_-	SINE	Alu	Name=AluSg7
ADediting_1454320	chr9_133156621_-	SINE	Alu	Name=AluSg7
ADediting_1454321	chr9_133156782_-	SINE	Alu	Name=AluJo
ADediting_1454322	chr9_133156855_-	SINE	Alu	Name=AluJo
ADediting_1454323	chr9_133156858_-	SINE	Alu	Name=AluJo
ADediting_1454324	chr9_133157014_-	SINE	Alu	Name=AluJo
ADediting_1454325	chr9_133157149_-	SINE	Alu	Name=AluJo
ADediting_1454326	chr9_133157172_-	SINE	Alu	Name=AluJo
ADediting_1454327	chr9_133157175_-	SINE	Alu	Name=AluJo
ADediting_1454328	chr9_133157176_-	SINE	Alu	Name=AluJo
ADediting_1454329	chr9_133157201_-	SINE	Alu	Name=AluJo
ADediting_1454330	chr9_133157224_-	SINE	Alu	Name=AluJo
ADediting_1454331	chr9_133157243_-	SINE	Alu	Name=AluJo
ADediting_1454332	chr9_133157877_-	SINE	Alu	Name=AluSc
ADediting_1454333	chr9_133157890_-	SINE	Alu	Name=AluSc
ADediting_1454334	chr9_133157902_-	SINE	Alu	Name=AluSc
ADediting_1454335	chr9_133157903_-	SINE	Alu	Name=AluSc
ADediting_1454336	chr9_133157904_-	SINE	Alu	Name=AluSc
ADediting_1454337	chr9_133157965_-	SINE	Alu	Name=AluSc
ADediting_1454338	chr9_133157976_-	SINE	Alu	Name=AluSc
ADediting_1454339	chr9_133158021_-	SINE	Alu	Name=AluSc
ADediting_1454340	chr9_133158036_-	SINE	Alu	Name=AluSc
ADediting_1454341	chr9_133158037_-	SINE	Alu	Name=AluSc
ADediting_1454342	chr9_133158045_-	SINE	Alu	Name=AluSc
ADediting_1454343	chr9_133158062_-	SINE	Alu	Name=AluSc
ADediting_1454344	chr9_133158077_-	SINE	Alu	Name=AluSc
ADediting_1454347	chr9_133158316_-	SINE	Alu	Name=AluJb
ADediting_1454348	chr9_133158317_-	SINE	Alu	Name=AluJb
ADediting_1454349	chr9_133158351_-	SINE	Alu	Name=AluJb
ADediting_1454350	chr9_133158363_-	SINE	Alu	Name=AluJb
ADediting_1454351	chr9_133158371_-	SINE	Alu	Name=AluJb
ADediting_1454352	chr9_133158376_-	SINE	Alu	Name=AluJb
ADediting_1454353	chr9_133158403_-	SINE	Alu	Name=AluJb
ADediting_1454354	chr9_133158446_-	SINE	Alu	Name=AluJb
ADediting_1454355	chr9_133158447_-	SINE	Alu	Name=AluJb
ADediting_1454356	chr9_133158502_-	SINE	Alu	Name=AluJb
ADediting_1454357	chr9_133158503_-	SINE	Alu	Name=AluJb
ADediting_1454358	chr9_133158511_-	SINE	Alu	Name=AluJb
ADediting_1454359	chr9_133158526_-	SINE	Alu	Name=AluJb
ADediting_1454360	chr9_133158530_-	SINE	Alu	Name=AluJb
ADediting_1454361	chr9_133158539_-	SINE	Alu	Name=AluJb
ADediting_1454362	chr9_133158548_-	SINE	Alu	Name=AluJb
ADediting_1454363	chr9_133158556_-	SINE	Alu	Name=AluJb
ADediting_1454364	chr9_133158570_-	SINE	Alu	Name=AluJb
ADediting_1454365	chr9_133158574_-	SINE	Alu	Name=AluJb
ADediting_1454366	chr9_133158575_-	SINE	Alu	Name=AluJb
ADediting_1454367	chr9_133158579_-	SINE	Alu	Name=AluJb
ADediting_1454368	chr9_133159013_-	SINE	Alu	Name=AluSz
ADediting_1454369	chr9_133159021_-	SINE	Alu	Name=AluSz
ADediting_1454370	chr9_133159023_-	SINE	Alu	Name=AluSz
ADediting_1454371	chr9_133159028_-	SINE	Alu	Name=AluSz
ADediting_1454372	chr9_133159029_-	SINE	Alu	Name=AluSz
ADediting_1454373	chr9_133159033_-	SINE	Alu	Name=AluSz
ADediting_1454374	chr9_133159037_-	SINE	Alu	Name=AluSz
ADediting_1454375	chr9_133159039_-	SINE	Alu	Name=AluSz
ADediting_1454376	chr9_133159044_-	SINE	Alu	Name=AluSz
ADediting_1454377	chr9_133159045_-	SINE	Alu	Name=AluSz
ADediting_1454378	chr9_133159053_-	SINE	Alu	Name=AluSz
ADediting_1454379	chr9_133159063_-	SINE	Alu	Name=AluSz
ADediting_1454380	chr9_133159066_-	SINE	Alu	Name=AluSz
ADediting_1454381	chr9_133159067_-	SINE	Alu	Name=AluSz
ADediting_1454382	chr9_133159072_-	SINE	Alu	Name=AluSz
ADediting_1454383	chr9_133159076_-	SINE	Alu	Name=AluSz
ADediting_1454384	chr9_133159082_-	SINE	Alu	Name=AluSz
ADediting_1454385	chr9_133159089_-	SINE	Alu	Name=AluSz
ADediting_1454386	chr9_133159093_-	SINE	Alu	Name=AluSz
ADediting_1454387	chr9_133159099_-	SINE	Alu	Name=AluSz
ADediting_1454388	chr9_133159129_-	SINE	Alu	Name=AluSz
ADediting_1454389	chr9_133159131_-	SINE	Alu	Name=AluSz
ADediting_1454390	chr9_133159134_-	SINE	Alu	Name=AluSz
ADediting_1454391	chr9_133159136_-	SINE	Alu	Name=AluSz
ADediting_1454392	chr9_133159137_-	SINE	Alu	Name=AluSz
ADediting_1454393	chr9_133159142_-	SINE	Alu	Name=AluSz
ADediting_1454394	chr9_133159143_-	SINE	Alu	Name=AluSz
ADediting_1454395	chr9_133159149_-	SINE	Alu	Name=AluSz
ADediting_1454396	chr9_133159154_-	SINE	Alu	Name=AluSz
ADediting_1454397	chr9_133159155_-	SINE	Alu	Name=AluSz
ADediting_1454398	chr9_133159156_-	SINE	Alu	Name=AluSz
ADediting_1454399	chr9_133159174_-	SINE	Alu	Name=AluSz
ADediting_1454400	chr9_133159177_-	SINE	Alu	Name=AluSz
ADediting_1454401	chr9_133159179_-	SINE	Alu	Name=AluSz
ADediting_1454402	chr9_133159180_-	SINE	Alu	Name=AluSz
ADediting_1454403	chr9_133159185_-	SINE	Alu	Name=AluSz
ADediting_1454404	chr9_133159188_-	SINE	Alu	Name=AluSz
ADediting_1454405	chr9_133159193_-	SINE	Alu	Name=AluSz
ADediting_1454406	chr9_133159217_-	SINE	Alu	Name=AluSz
ADediting_1454407	chr9_133159225_-	SINE	Alu	Name=AluSz
ADediting_1454408	chr9_133159233_-	SINE	Alu	Name=AluSz
ADediting_1454409	chr9_133159234_-	SINE	Alu	Name=AluSz
ADediting_1454410	chr9_133159250_-	SINE	Alu	Name=AluSz
ADediting_1454411	chr9_133159619_-	SINE	Alu	Name=AluJr
ADediting_1454412	chr9_133159675_-	SINE	Alu	Name=AluJr
ADediting_1454413	chr9_133159681_-	SINE	Alu	Name=AluJr
ADediting_1454414	chr9_133159685_-	SINE	Alu	Name=AluJr
ADediting_1454415	chr9_133159714_-	SINE	Alu	Name=AluJr
ADediting_1454416	chr9_133159735_-	SINE	Alu	Name=AluJr
ADediting_1454417	chr9_133159737_-	SINE	Alu	Name=AluJr
ADediting_1454418	chr9_133159740_-	SINE	Alu	Name=AluJr
ADediting_1454419	chr9_133159745_-	SINE	Alu	Name=AluJr
ADediting_1454420	chr9_133160031_-	SINE	Alu	Name=AluSz6
ADediting_1454421	chr9_133160032_-	SINE	Alu	Name=AluSz6
ADediting_1454422	chr9_133160033_-	SINE	Alu	Name=AluSz6
ADediting_1454423	chr9_133160110_-	SINE	Alu	Name=AluSz6
ADediting_1454424	chr9_133160115_-	SINE	Alu	Name=AluSz6
ADediting_1454425	chr9_133160118_-	SINE	Alu	Name=AluSz6
ADediting_1454426	chr9_133160120_-	SINE	Alu	Name=AluSz6
ADediting_1454427	chr9_133160121_-	SINE	Alu	Name=AluSz6
ADediting_1454428	chr9_133160124_-	SINE	Alu	Name=AluSz6
ADediting_1454429	chr9_133160127_-	SINE	Alu	Name=AluSz6
ADediting_1454430	chr9_133160133_-	SINE	Alu	Name=AluSz6
ADediting_1454431	chr9_133160157_-	SINE	Alu	Name=AluSz6
ADediting_1454432	chr9_133160175_-	SINE	Alu	Name=AluSz6
ADediting_1454433	chr9_133160179_-	SINE	Alu	Name=AluSz6
ADediting_1454434	chr9_133160186_-	SINE	Alu	Name=AluSz6
ADediting_1454435	chr9_133160192_-	SINE	Alu	Name=AluSz6
ADediting_1454436	chr9_133160193_-	SINE	Alu	Name=AluSz6
ADediting_1454437	chr9_133160196_-	SINE	Alu	Name=AluSz6
ADediting_1454438	chr9_133160197_-	SINE	Alu	Name=AluSz6
ADediting_1454439	chr9_133160210_-	SINE	Alu	Name=AluSz6
ADediting_1454440	chr9_133160216_-	SINE	Alu	Name=AluSz6
ADediting_1454441	chr9_133160217_-	SINE	Alu	Name=AluSz6
ADediting_1454442	chr9_133160227_-	SINE	Alu	Name=AluSz6
ADediting_1454443	chr9_133160243_-	SINE	Alu	Name=AluSz6
ADediting_1454444	chr9_133160246_-	SINE	Alu	Name=AluSz6
ADediting_1454445	chr9_133160775_-	SINE	Alu	Name=AluSx1
ADediting_1454446	chr9_133160807_-	SINE	Alu	Name=AluSx1
ADediting_1454447	chr9_133160901_-	SINE	Alu	Name=AluSx1
ADediting_1593020	chr9_133156774_-	SINE	Alu	Name=AluJo
ADediting_1593021	chr9_133156786_-	SINE	Alu	Name=AluJo
ADediting_1593022	chr9_133156790_-	SINE	Alu	Name=AluJo
ADediting_1593023	chr9_133156809_-	SINE	Alu	Name=AluJo
ADediting_1593024	chr9_133156810_-	SINE	Alu	Name=AluJo
ADediting_1593025	chr9_133156823_-	SINE	Alu	Name=AluJo
ADediting_1593026	chr9_133156826_-	SINE	Alu	Name=AluJo
ADediting_1593027	chr9_133156827_-	SINE	Alu	Name=AluJo
ADediting_1593028	chr9_133156854_-	SINE	Alu	Name=AluJo
ADediting_1593029	chr9_133156872_-	SINE	Alu	Name=AluJo
ADediting_1593030	chr9_133157101_-	SINE	Alu	Name=AluJo
ADediting_1593031	chr9_133157111_-	SINE	Alu	Name=AluJo
ADediting_1593032	chr9_133157118_-	SINE	Alu	Name=AluJo
ADediting_1593033	chr9_133157136_-	SINE	Alu	Name=AluJo
ADediting_1593034	chr9_133157160_-	SINE	Alu	Name=AluJo
ADediting_1593035	chr9_133157232_-	SINE	Alu	Name=AluJo
ADediting_1593036	chr9_133158497_-	SINE	Alu	Name=AluJb
ADediting_1593037	chr9_133158534_-	SINE	Alu	Name=AluJb
ADediting_1593038	chr9_133159162_-	SINE	Alu	Name=AluSz
ADediting_1593039	chr9_133159528_-	SINE	Alu	Name=AluJr
ADediting_1593040	chr9_133159586_-	SINE	Alu	Name=AluJr
ADediting_1593041	chr9_133159625_-	SINE	Alu	Name=AluJr
ADediting_1593042	chr9_133159688_-	SINE	Alu	Name=AluJr
ADediting_1593043	chr9_133159702_-	SINE	Alu	Name=AluJr
ADediting_1593044	chr9_133159791_-	SINE	Alu	Name=AluJr
ADediting_1593045	chr9_133160020_-	SINE	Alu	Name=AluSz6
ADediting_1593046	chr9_133160167_-	SINE	Alu	Name=AluSz6
ADediting_1593047	chr9_133160222_-	SINE	Alu	Name=AluSz6
ADediting_1593048	chr9_133160753_-	SINE	Alu	Name=AluSx1

Top

RNA A-to-I editing events in the alternative splicing sites for GBGT1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

ADeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for GBGT1

Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

- Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

ADeditome ID

Chr

Positoing

Skipped exon

ENSG

ENSTs

Top

Protein coding region RNA A-to-I editings for GBGT1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

Top

The effects of the RNA editing to the miRNA binding sites for GBGT1

RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

ADeditom_ID	Position	ENSG	ENST	Transcript name	miRNA ID	Chromosome	Targt	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
ADediting_1454420	chr9_133160031_-	ENSG00000148288.13	ENST00000372036.4	GBGT1-201	hsa-miR-1249-3p	chr9	133160027	133160033	7mer-m8	133160026	133160048	147	-21.74
ADediting_1454420	chr9_133160031_-	ENSG00000148288.13	ENST00000372036.4	GBGT1-201	hsa-miR-938	chr9	133160028	133160034	7mer-m8	133160027	133160048	145	-21.47
ADediting_1454420	chr9_133160031_-	ENSG00000148288.13	ENST00000644196.1	GBGT1-210	hsa-miR-1249-3p	chr9	133160027	133160033	7mer-m8	133160026	133160048	147	-21.74
ADediting_1454420	chr9_133160031_-	ENSG00000148288.13	ENST00000644196.1	GBGT1-210	hsa-miR-938	chr9	133160028	133160034	7mer-m8	133160027	133160048	145	-21.47
ADediting_1454427	chr9_133160121_-	ENSG00000148288.13	ENST00000372036.4	GBGT1-201	hsa-miR-4684-5p	chr9	133160120	133160126	7mer-m8	133160119	133160141	159	-15.66
ADediting_1454427	chr9_133160121_-	ENSG00000148288.13	ENST00000372036.4	GBGT1-201	hsa-miR-593-3p	chr9	133160118	133160124	7mer-1a	133160118	133160136	140	-19.02
ADediting_1454427	chr9_133160121_-	ENSG00000148288.13	ENST00000372036.4	GBGT1-201	hsa-miR-626	chr9	133160115	133160122	8mer-1a	133160115	133160138	143	-12.02
ADediting_1454427	chr9_133160121_-	ENSG00000148288.13	ENST00000372036.4	GBGT1-201	hsa-miR-6818-3p	chr9	133160118	133160124	7mer-m8	133160117	133160138	140	-12.56
ADediting_1454427	chr9_133160121_-	ENSG00000148288.13	ENST00000372036.4	GBGT1-201	hsa-miR-6876-3p	chr9	133160115	133160122	8mer-1a	133160115	133160138	149	-14.38
ADediting_1454427	chr9_133160121_-	ENSG00000148288.13	ENST00000644196.1	GBGT1-210	hsa-miR-4684-5p	chr9	133160120	133160126	7mer-m8	133160119	133160141	159	-15.66
ADediting_1454427	chr9_133160121_-	ENSG00000148288.13	ENST00000644196.1	GBGT1-210	hsa-miR-593-3p	chr9	133160118	133160124	7mer-1a	133160118	133160136	140	-19.02
ADediting_1454427	chr9_133160121_-	ENSG00000148288.13	ENST00000644196.1	GBGT1-210	hsa-miR-626	chr9	133160115	133160122	8mer-1a	133160115	133160138	143	-12.02
ADediting_1454427	chr9_133160121_-	ENSG00000148288.13	ENST00000644196.1	GBGT1-210	hsa-miR-6818-3p	chr9	133160118	133160124	7mer-m8	133160117	133160138	140	-12.56
ADediting_1454427	chr9_133160121_-	ENSG00000148288.13	ENST00000644196.1	GBGT1-210	hsa-miR-6876-3p	chr9	133160115	133160122	8mer-1a	133160115	133160138	149	-14.38

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

ADediting_1454423

chr9_133160110_-

ENSG00000148288.13

ENST00000372036.4

GBGT1-201

hsa-miR-1272

chr9

133160106

133160112

7mer-m8

133160105

133160131

147

-12.38

ADediting_1454423

chr9_133160110_-

ENSG00000148288.13

ENST00000372036.4

GBGT1-201

hsa-miR-203a-3p

chr9

133160110

133160116

7mer-m8

133160109

133160130

146

-12.57

ADediting_1454423

chr9_133160110_-

ENSG00000148288.13

ENST00000644196.1

GBGT1-210

hsa-miR-1272

chr9

133160106

133160112

7mer-m8

133160105

133160131

147

-12.38

ADediting_1454423

chr9_133160110_-

ENSG00000148288.13

ENST00000644196.1

GBGT1-210

hsa-miR-203a-3p

chr9

133160110

133160116

7mer-m8

133160109

133160130

146

-12.57

ADediting_1454424

chr9_133160115_-

ENSG00000148288.13

ENST00000372036.4

GBGT1-201

hsa-miR-203a-3p

chr9

133160110

133160116

7mer-m8

133160109

133160130

146

-12.57

ADediting_1454424

chr9_133160115_-

ENSG00000148288.13

ENST00000644196.1

GBGT1-210

hsa-miR-203a-3p

chr9

133160110

133160116

7mer-m8

133160109

133160130

146

-12.57

ADediting_1593045

chr9_133160020_-

ENSG00000148288.13

ENST00000372036.4

GBGT1-201

hsa-miR-203a-5p

chr9

133160019

133160025

7mer-m8

133160018

133160040

141

-13.05

ADediting_1593045

chr9_133160020_-

ENSG00000148288.13

ENST00000372036.4

GBGT1-201

hsa-miR-876-3p

chr9

133160018

133160024

7mer-m8

133160018

133160038

151

-19.03

ADediting_1593045

chr9_133160020_-

ENSG00000148288.13

ENST00000644196.1

GBGT1-210

hsa-miR-203a-5p

chr9

133160019

133160025

7mer-m8

133160018

133160040

141

-13.05

ADediting_1593045

chr9_133160020_-

ENSG00000148288.13

ENST00000644196.1

GBGT1-210

hsa-miR-876-3p

chr9

133160017

133160024

8mer-1a

133160017

133160038

151

-22.11

RNA A-to-I editing in lncRNA gained miRNA binding sites.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

ADediting_1471003

chr9_63819626_+

ENSG00000148288.13

ENST00000470431.5

GBGT1-205

hsa-miR-4477b

chr9

133154590

133154596

7mer-m8

133154589

133154611

142

-13.33

ADediting_1556067

chr19_40282625_-

ENSG00000148288.13

ENST00000372040.9

GBGT1-203

hsa-miR-641

chr9

133153128

133153134

7mer-m8

133153127

133153152

151

-23.27

ADediting_1556067

chr19_40282625_-

ENSG00000148288.13

ENST00000372043.7

GBGT1-204

hsa-miR-641

chr9

133153128

133153134

7mer-m8

133153127

133153152

151

-23.27

ADediting_1556067

chr19_40282625_-

ENSG00000148288.13

ENST00000470431.5

GBGT1-205

hsa-miR-641

chr9

133153128

133153134

7mer-m8

133153127

133153152

151

-23.27

ADediting_496066

chr15_66496985_-

ENSG00000148288.13

ENST00000372040.9

GBGT1-203

hsa-miR-4512

chr9

133153093

133153099

7mer-m8

133153092

133153113

149

-14.38

ADediting_496066

chr15_66496985_-

ENSG00000148288.13

ENST00000372043.7

GBGT1-204

hsa-miR-4512

chr9

133153093

133153099

7mer-m8

133153092

133153113

149

-14.38

ADediting_496066

chr15_66496985_-

ENSG00000148288.13

ENST00000470431.5

GBGT1-205

hsa-miR-4512

chr9

133153093

133153099

7mer-m8

133153092

133153113

149

-14.38

ADediting_496066

chr15_66496985_-

ENSG00000148288.13

ENST00000470431.5

GBGT1-205

hsa-miR-4512

chr9

133154918

133154924

7mer-m8

133154917

133154937

151

-22.67

ADediting_98289

chr1_32086992_+

ENSG00000148288.13

ENST00000470431.5

GBGT1-205

hsa-miR-5585-3p

chr9

133153938

133153944

7mer-m8

133153937

133153958

157

-20.65

ADediting_98289

chr1_32086992_+

ENSG00000148288.13

ENST00000646215.1

GBGT1-212

hsa-miR-5585-3p

chr9

133153938

133153944

7mer-m8

133153937

133153958

157

-20.65

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

ADediting_291761

chr11_93733708_-

ENSG00000148288.13

ENST00000372040.9

GBGT1-203

hsa-miR-1304-3p

chr9

133153367

133153374

8mer-1a

133153367

133153388

149

-21.1

ADediting_291761

chr11_93733708_-

ENSG00000148288.13

ENST00000372043.7

GBGT1-204

hsa-miR-1304-3p

chr9

133153367

133153374

8mer-1a

133153367

133153388

149

-21.1

ADediting_291761

chr11_93733708_-

ENSG00000148288.13

ENST00000470431.5

GBGT1-205

hsa-miR-1304-3p

chr9

133153367

133153374

8mer-1a

133153367

133153388

149

-21.1

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for GBGT1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000644196.1	protein_coding
ENST00000372036.4	protein_coding

RNA A-to-I editing in miRNA.

ADeditom_ID

ENST

mir_ID

Editing_Information

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

RNA A-to-I editing in mRNA.

ADeditom_ID	ENST	Editing_Information	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
ADediting_1593045	ENST00000644196.1	chr9_133160020_-	533	-210.60	-210.50	-248.90
ADediting_1454420	ENST00000644196.1	chr9_133160031_-	522	-213.80	-210.50	-248.90
ADediting_1454421	ENST00000644196.1	chr9_133160032_-	521	-210.60	-210.50	-248.90
ADediting_1454422	ENST00000644196.1	chr9_133160033_-	520	-210.50	-210.50	-248.90
ADediting_1454423	ENST00000644196.1	chr9_133160110_-	443	-210.50	-210.50	-248.90
ADediting_1454424	ENST00000644196.1	chr9_133160115_-	438	-210.40	-210.50	-248.90
ADediting_1454425	ENST00000644196.1	chr9_133160118_-	435	-209.70	-210.50	-248.90
ADediting_1454426	ENST00000644196.1	chr9_133160120_-	433	-210.60	-210.50	-248.90
ADediting_1454427	ENST00000644196.1	chr9_133160121_-	432	-210.50	-210.50	-248.90
ADediting_1454428	ENST00000644196.1	chr9_133160124_-	429	-213.20	-210.50	-248.90
ADediting_1454429	ENST00000644196.1	chr9_133160127_-	426	-210.20	-210.50	-248.90
ADediting_1454430	ENST00000644196.1	chr9_133160133_-	420	-211.60	-210.50	-248.90
ADediting_1454431	ENST00000644196.1	chr9_133160157_-	396	-211.30	-210.50	-248.90
ADediting_1593046	ENST00000644196.1	chr9_133160167_-	386	-213.00	-210.50	-248.90
ADediting_1454432	ENST00000644196.1	chr9_133160175_-	378	-210.50	-210.50	-248.90
ADediting_1454433	ENST00000644196.1	chr9_133160179_-	374	-213.10	-210.50	-248.90
ADediting_1454434	ENST00000644196.1	chr9_133160186_-	367	-211.30	-210.50	-248.90
ADediting_1454435	ENST00000644196.1	chr9_133160192_-	361	-213.20	-210.50	-248.90
ADediting_1454436	ENST00000644196.1	chr9_133160193_-	360	-211.50	-210.50	-248.90
ADediting_1454437	ENST00000644196.1	chr9_133160196_-	357	-212.60	-210.50	-248.90
ADediting_1454438	ENST00000644196.1	chr9_133160197_-	356	-211.80	-210.50	-248.90
ADediting_1454439	ENST00000644196.1	chr9_133160210_-	343	-210.50	-210.50	-248.90
ADediting_1454440	ENST00000644196.1	chr9_133160216_-	337	-210.50	-210.50	-248.90
ADediting_1454441	ENST00000644196.1	chr9_133160217_-	336	-210.00	-210.50	-248.90
ADediting_1593047	ENST00000644196.1	chr9_133160222_-	331	-210.50	-210.50	-248.90
ADediting_1454442	ENST00000644196.1	chr9_133160227_-	326	-211.30	-210.50	-248.90
ADediting_1454443	ENST00000644196.1	chr9_133160243_-	310	-210.80	-210.50	-248.90
ADediting_1454444	ENST00000644196.1	chr9_133160246_-	307	-212.90	-210.50	-248.90
ADediting_1593045	ENST00000372036.4	chr9_133160020_-	631	-244.50	-243.00	-289.40
ADediting_1454420	ENST00000372036.4	chr9_133160031_-	620	-247.70	-243.00	-289.40
ADediting_1454421	ENST00000372036.4	chr9_133160032_-	619	-245.40	-243.00	-289.40
ADediting_1454422	ENST00000372036.4	chr9_133160033_-	618	-245.70	-243.00	-289.40
ADediting_1454423	ENST00000372036.4	chr9_133160110_-	541	-243.00	-243.00	-289.40
ADediting_1454424	ENST00000372036.4	chr9_133160115_-	536	-242.60	-243.00	-289.40
ADediting_1454425	ENST00000372036.4	chr9_133160118_-	533	-242.20	-243.00	-289.40
ADediting_1454426	ENST00000372036.4	chr9_133160120_-	531	-242.80	-243.00	-289.40
ADediting_1454427	ENST00000372036.4	chr9_133160121_-	530	-243.00	-243.00	-289.40
ADediting_1454428	ENST00000372036.4	chr9_133160124_-	527	-245.70	-243.00	-289.40
ADediting_1454429	ENST00000372036.4	chr9_133160127_-	524	-242.70	-243.00	-289.40
ADediting_1454430	ENST00000372036.4	chr9_133160133_-	518	-244.10	-243.00	-289.40
ADediting_1454431	ENST00000372036.4	chr9_133160157_-	494	-243.80	-243.00	-289.40
ADediting_1593046	ENST00000372036.4	chr9_133160167_-	484	-243.90	-243.00	-289.40
ADediting_1454432	ENST00000372036.4	chr9_133160175_-	476	-243.00	-243.00	-289.40
ADediting_1454433	ENST00000372036.4	chr9_133160179_-	472	-245.60	-243.00	-289.40
ADediting_1454434	ENST00000372036.4	chr9_133160186_-	465	-239.80	-243.00	-289.40
ADediting_1454435	ENST00000372036.4	chr9_133160192_-	459	-245.70	-243.00	-289.40
ADediting_1454436	ENST00000372036.4	chr9_133160193_-	458	-244.00	-243.00	-289.40
ADediting_1454437	ENST00000372036.4	chr9_133160196_-	455	-243.00	-243.00	-289.40
ADediting_1454438	ENST00000372036.4	chr9_133160197_-	454	-244.30	-243.00	-289.40
ADediting_1454439	ENST00000372036.4	chr9_133160210_-	441	-243.00	-243.00	-289.40
ADediting_1454440	ENST00000372036.4	chr9_133160216_-	435	-243.00	-243.00	-289.40
ADediting_1454441	ENST00000372036.4	chr9_133160217_-	434	-243.10	-243.00	-289.40
ADediting_1593047	ENST00000372036.4	chr9_133160222_-	429	-243.00	-243.00	-289.40
ADediting_1454442	ENST00000372036.4	chr9_133160227_-	424	-243.80	-243.00	-289.40
ADediting_1454443	ENST00000372036.4	chr9_133160243_-	408	-242.10	-243.00	-289.40
ADediting_1454444	ENST00000372036.4	chr9_133160246_-	405	-245.10	-243.00	-289.40

RNA A-to-I editing in lncRNA.

ADeditom_ID

ENST

Editing_Information

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

Top

Relation with ADAR for GBGT1

Correlation between ADAR gene expression and RNA editing frequency

Tissue

ADeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

Correlation between ADAR gene expression and this gene's expression

Tissue	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
DLPFC	1.80141667132089e-08	0.312962193057959	9.03880833631136e-12	0.374716228661823	3.09283855730163e-05	0.234287115842176
AC	1.1208716696563e-20	0.544225960026088	5.79628750045261e-10	0.379041195152373	6.22353082984915e-22	0.558800553856793
PCC	0.00553782611990658	0.199997695097098	0.0216109953838966	0.166148609015835	7.03573808501485e-13	0.489072394479509
CER	4.52099261861457e-14	0.565832507351697	7.01243706667493e-11	0.500399852012307	0.000403032098655393	0.285244597062718
TCX	3.80141093868401e-07	0.400526757281084	0.0104747442543373	0.208445451157968	3.43573795141314e-05	0.331396012033737
FP	5.37422737337875e-07	0.365212386212193	0.000113860288788976	0.285220990185042	4.46011877379689e-13	0.508166429509696
IFG	0.0320053849775594	0.429803609854366	0.0246674670030239	0.448127165081562	0.000103021972660022	0.698505651356779
STG	0.158930906275969	0.155091323055881	0.98716312483614	0.00178219309917439	7.56890767708642e-09	0.579677355240201

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Relation with AD stages for GBGT1

Correlation between AD stages and RNA editing frequency

Tissue

ADeditomID

position

P-val

Coeff.

Correlation between AD stages and this gene's expression

Tissue	P-val	Coeff.
CER	2.09094733302756e-05	0.397088162953432
TCX	2.2740377046135e-07	0.477486110491159

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RelatedDrugs for GBGT1

Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for GBGT1

Diseases associated with this gene.
(DisGeNet 4.0)

Gene

Disease ID

Disease name

# pubmeds

Source

Home

Download

Statistics

Landscape

Help

Contact

Gene summary for GBGT1

RNA A-to-I events for GBGT1

RNA editing positional annotations for GBGT1 using Annovar

RNA A-to-I editing events in the alternative splicing sites for GBGT1

Differntial gene expression between RNA A-to-I edited versus non-edited samples for GBGT1

Protein coding region RNA A-to-I editings for GBGT1

The effects of the RNA editing to the miRNA binding sites for GBGT1

The effects of the RNA editing to the stability of the RNA structures for GBGT1

Relation with ADAR for GBGT1

Relation with AD stages for GBGT1

RelatedDrugs for GBGT1

RelatedDiseases for GBGT1

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited versus non-edited samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with AD stages
	Related drugs with this gene
	Related diseases with this gene