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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for SERBP1 |
 Gene summary |
| Gene information | Gene symbol | SERBP1 | Gene ID | 26135 |
| Gene name | SERPINE1 mRNA binding protein 1 | |
| Synonyms | CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 | |
| Cytomap | 1p31.3 | |
| Type of gene | protein-coding | |
| Description | plasminogen activator inhibitor 1 RNA-binding proteinPAI-1 mRNA binding proteinPAI1 RNA-binding protein 1chromodomain helicase DNA binding protein 3 interacting protein | |
| Modification date | 20200313 | |
| UniProtAcc | Q8NC51, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
| SERBP1 | GO:0030578 | PML body organization | 28695742 |
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RNA A-to-I events for SERBP1 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_136137(67409006, -), ADediting_136138(67409008, -), ADediting_136139(67409013, -), ADediting_136140(67409014, -), ADediting_136141(67409018, -), ADediting_136142(67409022, -), ADediting_136143(67409042, -), ADediting_136144(67409043, -), ADediting_136145(67409048, -), ADediting_136146(67409051, -), ADediting_136147(67409142, -), ADediting_136148(67409159, -), ADediting_136149(67409166, -), ADediting_136150(67409171, -), ADediting_136151(67409176, -), ADediting_136152(67409181, -), ADediting_136153(67409184, -), ADediting_136154(67413446, -), ADediting_136155(67413457, -), ADediting_136156(67413528, -), ADediting_136157(67413537, -), ADediting_136158(67413566, -), ADediting_136159(67413573, -), ADediting_136160(67413837, -), ADediting_136161(67413869, -), ADediting_136162(67413878, -), ADediting_136163(67413899, -), ADediting_136164(67413904, -), ADediting_136165(67413909, -), ADediting_136166(67413935, -), ADediting_136167(67413943, -), ADediting_136168(67413944, -), ADediting_136169(67413966, -), ADediting_136170(67413970, -), ADediting_136171(67414003, -), ADediting_136172(67414006, -), ADediting_136173(67414008, -), ADediting_136174(67414013, -), ADediting_136175(67414032, -), ADediting_136176(67414062, -), ADediting_136177(67414071, -), ADediting_136178(67417002, -), ADediting_136179(67417019, -), ADediting_136180(67417125, -), ADediting_136181(67417126, -), ADediting_136182(67417187, -), ADediting_136183(67417192, -), ADediting_136184(67417553, -), ADediting_136185(67417557, -), ADediting_136186(67417574, -), ADediting_136187(67417596, -), ADediting_136188(67417603, -), ADediting_136189(67417608, -), ADediting_136190(67417613, -), ADediting_136191(67417790, -), ADediting_136192(67418036, -), ADediting_136193(67418043, -), ADediting_136194(67418052, -), ADediting_136195(67418061, -), ADediting_136196(67418068, -), ADediting_136197(67418108, -), ADediting_136198(67418113, -), ADediting_136199(67418114, -), ADediting_136200(67418143, -), ADediting_136201(67418152, -), ADediting_136202(67418153, -), ADediting_136203(67418168, -), ADediting_136204(67418178, -), ADediting_136205(67418194, -), ADediting_136206(67418207, -), ADediting_136207(67418229, -), ADediting_136208(67418231, -), ADediting_136209(67418248, -), ADediting_136210(67418255, -), ADediting_136211(67418555, -), ADediting_136212(67418556, -), ADediting_136213(67418567, -), ADediting_136214(67418586, -), ADediting_136215(67418591, -), ADediting_136216(67418593, -), ADediting_136217(67418596, -), ADediting_136218(67418637, -), ADediting_136219(67418647, -), ADediting_136220(67418658, -), ADediting_136221(67418659, -), ADediting_136222(67418673, -), ADediting_136223(67418675, -), ADediting_136224(67418690, -), ADediting_136225(67418696, -), ADediting_136226(67418712, -), ADediting_136227(67418715, -), ADediting_136228(67418725, -), ADediting_1521425(67409206, -), ADediting_1521426(67413586, -), ADediting_1521427(67413912, -), ADediting_1521428(67413915, -), ADediting_1521429(67413916, -), ADediting_1521430(67413922, -), ADediting_1521431(67414022, -), ADediting_1521432(67417098, -), ADediting_1521433(67417110, -), ADediting_1521434(67417153, -), ADediting_1601973(67413567, -), ADediting_1601974(67413903, -), ADediting_1601975(67416286, -), ADediting_1601976(67418157, -), |
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RNA editing positional annotations for SERBP1 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_136137 | chr1_67409006_- | UTR3 |
| ADediting_136138 | chr1_67409008_- | UTR3 |
| ADediting_136139 | chr1_67409013_- | UTR3 |
| ADediting_136140 | chr1_67409014_- | UTR3 |
| ADediting_136141 | chr1_67409018_- | UTR3 |
| ADediting_136142 | chr1_67409022_- | UTR3 |
| ADediting_136143 | chr1_67409042_- | UTR3 |
| ADediting_136144 | chr1_67409043_- | UTR3 |
| ADediting_136145 | chr1_67409048_- | UTR3 |
| ADediting_136146 | chr1_67409051_- | UTR3 |
| ADediting_136147 | chr1_67409142_- | UTR3 |
| ADediting_136148 | chr1_67409159_- | UTR3 |
| ADediting_136149 | chr1_67409166_- | UTR3 |
| ADediting_136150 | chr1_67409171_- | UTR3 |
| ADediting_136151 | chr1_67409176_- | UTR3 |
| ADediting_136152 | chr1_67409181_- | UTR3 |
| ADediting_136153 | chr1_67409184_- | UTR3 |
| ADediting_136154 | chr1_67413446_- | intronic |
| ADediting_136155 | chr1_67413457_- | intronic |
| ADediting_136156 | chr1_67413528_- | intronic |
| ADediting_136157 | chr1_67413537_- | intronic |
| ADediting_136158 | chr1_67413566_- | intronic |
| ADediting_136159 | chr1_67413573_- | intronic |
| ADediting_136160 | chr1_67413837_- | intronic |
| ADediting_136161 | chr1_67413869_- | intronic |
| ADediting_136162 | chr1_67413878_- | intronic |
| ADediting_136163 | chr1_67413899_- | intronic |
| ADediting_136164 | chr1_67413904_- | intronic |
| ADediting_136165 | chr1_67413909_- | intronic |
| ADediting_136166 | chr1_67413935_- | intronic |
| ADediting_136167 | chr1_67413943_- | intronic |
| ADediting_136168 | chr1_67413944_- | intronic |
| ADediting_136169 | chr1_67413966_- | intronic |
| ADediting_136170 | chr1_67413970_- | intronic |
| ADediting_136171 | chr1_67414003_- | intronic |
| ADediting_136172 | chr1_67414006_- | intronic |
| ADediting_136173 | chr1_67414008_- | intronic |
| ADediting_136174 | chr1_67414013_- | intronic |
| ADediting_136175 | chr1_67414032_- | intronic |
| ADediting_136176 | chr1_67414062_- | intronic |
| ADediting_136177 | chr1_67414071_- | intronic |
| ADediting_136178 | chr1_67417002_- | intronic |
| ADediting_136179 | chr1_67417019_- | intronic |
| ADediting_136180 | chr1_67417125_- | intronic |
| ADediting_136181 | chr1_67417126_- | intronic |
| ADediting_136182 | chr1_67417187_- | intronic |
| ADediting_136183 | chr1_67417192_- | intronic |
| ADediting_136184 | chr1_67417553_- | intronic |
| ADediting_136185 | chr1_67417557_- | intronic |
| ADediting_136186 | chr1_67417574_- | intronic |
| ADediting_136187 | chr1_67417596_- | intronic |
| ADediting_136188 | chr1_67417603_- | intronic |
| ADediting_136189 | chr1_67417608_- | intronic |
| ADediting_136190 | chr1_67417613_- | intronic |
| ADediting_136191 | chr1_67417790_- | intronic |
| ADediting_136192 | chr1_67418036_- | intronic |
| ADediting_136193 | chr1_67418043_- | intronic |
| ADediting_136194 | chr1_67418052_- | intronic |
| ADediting_136195 | chr1_67418061_- | intronic |
| ADediting_136196 | chr1_67418068_- | intronic |
| ADediting_136197 | chr1_67418108_- | intronic |
| ADediting_136198 | chr1_67418113_- | intronic |
| ADediting_136199 | chr1_67418114_- | intronic |
| ADediting_136200 | chr1_67418143_- | intronic |
| ADediting_136201 | chr1_67418152_- | intronic |
| ADediting_136202 | chr1_67418153_- | intronic |
| ADediting_136203 | chr1_67418168_- | intronic |
| ADediting_136204 | chr1_67418178_- | intronic |
| ADediting_136205 | chr1_67418194_- | intronic |
| ADediting_136206 | chr1_67418207_- | intronic |
| ADediting_136207 | chr1_67418229_- | intronic |
| ADediting_136208 | chr1_67418231_- | intronic |
| ADediting_136209 | chr1_67418248_- | intronic |
| ADediting_136210 | chr1_67418255_- | intronic |
| ADediting_136211 | chr1_67418555_- | intronic |
| ADediting_136212 | chr1_67418556_- | intronic |
| ADediting_136213 | chr1_67418567_- | intronic |
| ADediting_136214 | chr1_67418586_- | intronic |
| ADediting_136215 | chr1_67418591_- | intronic |
| ADediting_136216 | chr1_67418593_- | intronic |
| ADediting_136217 | chr1_67418596_- | intronic |
| ADediting_136218 | chr1_67418637_- | intronic |
| ADediting_136219 | chr1_67418647_- | intronic |
| ADediting_136220 | chr1_67418658_- | intronic |
| ADediting_136221 | chr1_67418659_- | intronic |
| ADediting_136222 | chr1_67418673_- | intronic |
| ADediting_136223 | chr1_67418675_- | intronic |
| ADediting_136224 | chr1_67418690_- | intronic |
| ADediting_136225 | chr1_67418696_- | intronic |
| ADediting_136226 | chr1_67418712_- | intronic |
| ADediting_136227 | chr1_67418715_- | intronic |
| ADediting_136228 | chr1_67418725_- | intronic |
| ADediting_1521425 | chr1_67409206_- | UTR3 |
| ADediting_1521426 | chr1_67413586_- | intronic |
| ADediting_1521427 | chr1_67413912_- | intronic |
| ADediting_1521428 | chr1_67413915_- | intronic |
| ADediting_1521429 | chr1_67413916_- | intronic |
| ADediting_1521430 | chr1_67413922_- | intronic |
| ADediting_1521431 | chr1_67414022_- | intronic |
| ADediting_1521432 | chr1_67417098_- | intronic |
| ADediting_1521433 | chr1_67417110_- | intronic |
| ADediting_1521434 | chr1_67417153_- | intronic |
| ADediting_1601973 | chr1_67413567_- | intronic |
| ADediting_1601974 | chr1_67413903_- | intronic |
| ADediting_1601975 | chr1_67416286_- | intronic |
| ADediting_1601976 | chr1_67418157_- | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_136137 | chr1_67409006_- | SINE | Alu | Name=AluSz6 |
| ADediting_136138 | chr1_67409008_- | SINE | Alu | Name=AluSz6 |
| ADediting_136139 | chr1_67409013_- | SINE | Alu | Name=AluSz6 |
| ADediting_136140 | chr1_67409014_- | SINE | Alu | Name=AluSz6 |
| ADediting_136141 | chr1_67409018_- | SINE | Alu | Name=AluSz6 |
| ADediting_136142 | chr1_67409022_- | SINE | Alu | Name=AluSz6 |
| ADediting_136143 | chr1_67409042_- | SINE | Alu | Name=AluSz6 |
| ADediting_136144 | chr1_67409043_- | SINE | Alu | Name=AluSz6 |
| ADediting_136145 | chr1_67409048_- | SINE | Alu | Name=AluSz6 |
| ADediting_136146 | chr1_67409051_- | SINE | Alu | Name=AluSz6 |
| ADediting_136147 | chr1_67409142_- | SINE | Alu | Name=AluSz6 |
| ADediting_136148 | chr1_67409159_- | SINE | Alu | Name=AluSz6 |
| ADediting_136149 | chr1_67409166_- | SINE | Alu | Name=AluSz6 |
| ADediting_136150 | chr1_67409171_- | SINE | Alu | Name=AluSz6 |
| ADediting_136151 | chr1_67409176_- | SINE | Alu | Name=AluSz6 |
| ADediting_136152 | chr1_67409181_- | SINE | Alu | Name=AluSz6 |
| ADediting_136153 | chr1_67409184_- | SINE | Alu | Name=AluSz6 |
| ADediting_136154 | chr1_67413446_- | SINE | Alu | Name=AluSx1 |
| ADediting_136155 | chr1_67413457_- | SINE | Alu | Name=AluSx1 |
| ADediting_136156 | chr1_67413528_- | SINE | Alu | Name=AluSx1 |
| ADediting_136157 | chr1_67413537_- | SINE | Alu | Name=AluSx1 |
| ADediting_136158 | chr1_67413566_- | SINE | Alu | Name=AluSx1 |
| ADediting_136159 | chr1_67413573_- | SINE | Alu | Name=AluSx1 |
| ADediting_136160 | chr1_67413837_- | SINE | Alu | Name=AluSx |
| ADediting_136161 | chr1_67413869_- | SINE | Alu | Name=AluSx |
| ADediting_136162 | chr1_67413878_- | SINE | Alu | Name=AluSx |
| ADediting_136163 | chr1_67413899_- | SINE | Alu | Name=AluSx |
| ADediting_136164 | chr1_67413904_- | SINE | Alu | Name=AluSx |
| ADediting_136165 | chr1_67413909_- | SINE | Alu | Name=AluSx |
| ADediting_136166 | chr1_67413935_- | SINE | Alu | Name=AluSx |
| ADediting_136167 | chr1_67413943_- | SINE | Alu | Name=AluSx |
| ADediting_136168 | chr1_67413944_- | SINE | Alu | Name=AluSx |
| ADediting_136169 | chr1_67413966_- | SINE | Alu | Name=AluSx |
| ADediting_136170 | chr1_67413970_- | SINE | Alu | Name=AluSx |
| ADediting_136171 | chr1_67414003_- | SINE | Alu | Name=AluSx |
| ADediting_136172 | chr1_67414006_- | SINE | Alu | Name=AluSx |
| ADediting_136173 | chr1_67414008_- | SINE | Alu | Name=AluSx |
| ADediting_136174 | chr1_67414013_- | SINE | Alu | Name=AluSx |
| ADediting_136175 | chr1_67414032_- | SINE | Alu | Name=AluSx |
| ADediting_136176 | chr1_67414062_- | SINE | Alu | Name=AluSx |
| ADediting_136177 | chr1_67414071_- | SINE | Alu | Name=AluSx |
| ADediting_136178 | chr1_67417002_- | SINE | Alu | Name=AluJb |
| ADediting_136179 | chr1_67417019_- | SINE | Alu | Name=AluJb |
| ADediting_136180 | chr1_67417125_- | SINE | Alu | Name=AluJb |
| ADediting_136181 | chr1_67417126_- | SINE | Alu | Name=AluJb |
| ADediting_136182 | chr1_67417187_- | SINE | Alu | Name=AluJb |
| ADediting_136183 | chr1_67417192_- | SINE | Alu | Name=AluJb |
| ADediting_136184 | chr1_67417553_- | SINE | Alu | Name=AluSz |
| ADediting_136185 | chr1_67417557_- | SINE | Alu | Name=AluSz |
| ADediting_136186 | chr1_67417574_- | SINE | Alu | Name=AluSz |
| ADediting_136187 | chr1_67417596_- | SINE | Alu | Name=AluSz |
| ADediting_136188 | chr1_67417603_- | SINE | Alu | Name=AluSz |
| ADediting_136189 | chr1_67417608_- | SINE | Alu | Name=AluSz |
| ADediting_136190 | chr1_67417613_- | SINE | Alu | Name=AluSz |
| ADediting_136191 | chr1_67417790_- | SINE | Alu | Name=AluSz |
| ADediting_136192 | chr1_67418036_- | SINE | Alu | Name=AluSx |
| ADediting_136193 | chr1_67418043_- | SINE | Alu | Name=AluSx |
| ADediting_136194 | chr1_67418052_- | SINE | Alu | Name=AluSx |
| ADediting_136195 | chr1_67418061_- | SINE | Alu | Name=AluSx |
| ADediting_136196 | chr1_67418068_- | SINE | Alu | Name=AluSx |
| ADediting_136197 | chr1_67418108_- | SINE | Alu | Name=AluSx |
| ADediting_136198 | chr1_67418113_- | SINE | Alu | Name=AluSx |
| ADediting_136199 | chr1_67418114_- | SINE | Alu | Name=AluSx |
| ADediting_136200 | chr1_67418143_- | SINE | Alu | Name=AluSx |
| ADediting_136201 | chr1_67418152_- | SINE | Alu | Name=AluSx |
| ADediting_136202 | chr1_67418153_- | SINE | Alu | Name=AluSx |
| ADediting_136203 | chr1_67418168_- | SINE | Alu | Name=AluSx |
| ADediting_136204 | chr1_67418178_- | SINE | Alu | Name=AluSx |
| ADediting_136205 | chr1_67418194_- | SINE | Alu | Name=AluSx |
| ADediting_136206 | chr1_67418207_- | SINE | Alu | Name=AluSx |
| ADediting_136207 | chr1_67418229_- | SINE | Alu | Name=AluSx |
| ADediting_136208 | chr1_67418231_- | SINE | Alu | Name=AluSx |
| ADediting_136209 | chr1_67418248_- | SINE | Alu | Name=AluSx |
| ADediting_136210 | chr1_67418255_- | SINE | Alu | Name=AluSx |
| ADediting_136211 | chr1_67418555_- | SINE | Alu | Name=AluSz6 |
| ADediting_136212 | chr1_67418556_- | SINE | Alu | Name=AluSz6 |
| ADediting_136213 | chr1_67418567_- | SINE | Alu | Name=AluSz6 |
| ADediting_136214 | chr1_67418586_- | SINE | Alu | Name=AluSz6 |
| ADediting_136215 | chr1_67418591_- | SINE | Alu | Name=AluSz6 |
| ADediting_136216 | chr1_67418593_- | SINE | Alu | Name=AluSz6 |
| ADediting_136217 | chr1_67418596_- | SINE | Alu | Name=AluSz6 |
| ADediting_136218 | chr1_67418637_- | SINE | Alu | Name=AluSz6 |
| ADediting_136219 | chr1_67418647_- | SINE | Alu | Name=AluSz6 |
| ADediting_136220 | chr1_67418658_- | SINE | Alu | Name=AluSz6 |
| ADediting_136221 | chr1_67418659_- | SINE | Alu | Name=AluSz6 |
| ADediting_136222 | chr1_67418673_- | SINE | Alu | Name=AluSz6 |
| ADediting_136223 | chr1_67418675_- | SINE | Alu | Name=AluSz6 |
| ADediting_136224 | chr1_67418690_- | SINE | Alu | Name=AluSz6 |
| ADediting_136225 | chr1_67418696_- | SINE | Alu | Name=AluSz6 |
| ADediting_136226 | chr1_67418712_- | SINE | Alu | Name=AluSz6 |
| ADediting_136227 | chr1_67418715_- | SINE | Alu | Name=AluSz6 |
| ADediting_136228 | chr1_67418725_- | SINE | Alu | Name=AluSz6 |
| ADediting_1521425 | chr1_67409206_- | SINE | Alu | Name=AluSz6 |
| ADediting_1521426 | chr1_67413586_- | SINE | Alu | Name=AluSx1 |
| ADediting_1521427 | chr1_67413912_- | SINE | Alu | Name=AluSx |
| ADediting_1521428 | chr1_67413915_- | SINE | Alu | Name=AluSx |
| ADediting_1521429 | chr1_67413916_- | SINE | Alu | Name=AluSx |
| ADediting_1521430 | chr1_67413922_- | SINE | Alu | Name=AluSx |
| ADediting_1521431 | chr1_67414022_- | SINE | Alu | Name=AluSx |
| ADediting_1521432 | chr1_67417098_- | SINE | Alu | Name=AluJb |
| ADediting_1521433 | chr1_67417110_- | SINE | Alu | Name=AluJb |
| ADediting_1521434 | chr1_67417153_- | SINE | Alu | Name=AluJb |
| ADediting_1601973 | chr1_67413567_- | SINE | Alu | Name=AluSx1 |
| ADediting_1601974 | chr1_67413903_- | SINE | Alu | Name=AluSx |
| ADediting_1601975 | chr1_67416286_- | SINE | Alu | Name=AluJb |
| ADediting_1601976 | chr1_67418157_- | SINE | Alu | Name=AluSx |
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RNA A-to-I editing events in the alternative splicing sites for SERBP1 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SERBP1 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for SERBP1 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for SERBP1 |
| RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_136137 | chr1_67409006_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-4659a-5p | chr1 | 67409003 | 67409009 | 7mer-m8 | 67409002 | 67409024 | 146 | -12.86 |
| ADediting_136137 | chr1_67409006_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-4659b-5p | chr1 | 67409003 | 67409009 | 7mer-m8 | 67409002 | 67409021 | 146 | -12.77 |
| ADediting_136139 | chr1_67409013_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-149-5p | chr1 | 67409013 | 67409019 | 7mer-m8 | 67409012 | 67409037 | 151 | -28.43 |
| ADediting_136140 | chr1_67409014_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-4638-5p | chr1 | 67409011 | 67409018 | 8mer-1a | 67409011 | 67409030 | 146 | -20.28 |
| ADediting_136141 | chr1_67409018_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-324-3p | chr1 | 67409018 | 67409024 | 7mer-m8 | 67409017 | 67409043 | 146 | -31.42 |
| ADediting_136143 | chr1_67409042_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-4437 | chr1 | 67409039 | 67409045 | 7mer-m8 | 67409038 | 67409058 | 146 | -20.13 |
| ADediting_136148 | chr1_67409159_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-25-5p | chr1 | 67409157 | 67409163 | 7mer-m8 | 67409156 | 67409176 | 147 | -20.74 |
| ADediting_136148 | chr1_67409159_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-658 | chr1 | 67409158 | 67409164 | 7mer-m8 | 67409157 | 67409182 | 149 | -28.56 |
| ADediting_136149 | chr1_67409166_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-6089 | chr1 | 67409161 | 67409167 | 7mer-m8 | 67409160 | 67409183 | 157 | -31.67 |
| ADediting_136150 | chr1_67409171_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-4670-5p | chr1 | 67409169 | 67409175 | 7mer-m8 | 67409168 | 67409193 | 154 | -18.32 |
| ADediting_136151 | chr1_67409176_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-4740-3p | chr1 | 67409174 | 67409180 | 7mer-m8 | 67409173 | 67409192 | 149 | -24.22 |
| ADediting_136152 | chr1_67409181_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-4786-5p | chr1 | 67409176 | 67409183 | 8mer-1a | 67409176 | 67409199 | 154 | -22.44 |
| ADediting_136152 | chr1_67409181_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-591 | chr1 | 67409179 | 67409185 | 7mer-m8 | 67409178 | 67409197 | 143 | -18.78 |
| ADediting_136152 | chr1_67409181_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-6502-3p | chr1 | 67409178 | 67409184 | 7mer-m8 | 67409177 | 67409197 | 147 | -12.61 |
| ADediting_136152 | chr1_67409181_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-6872-3p | chr1 | 67409181 | 67409187 | 7mer-m8 | 67409180 | 67409199 | 148 | -20.99 |
| ADediting_1521425 | chr1_67409206_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-4486 | chr1 | 67409201 | 67409207 | 7mer-m8 | 67409200 | 67409219 | 146 | -22.51 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_136142 | chr1_67409022_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-4772-3p | chr1 | 67409021 | 67409027 | 7mer-m8 | 67409020 | 67409042 | 150 | -17.58 |
| ADediting_136145 | chr1_67409048_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-8062 | chr1 | 67409046 | 67409052 | 7mer-m8 | 67409045 | 67409065 | 147 | -10.78 |
| ADediting_136146 | chr1_67409051_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-8062 | chr1 | 67409046 | 67409052 | 7mer-m8 | 67409045 | 67409065 | 147 | -10.78 |
| ADediting_136147 | chr1_67409142_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-219b-3p | chr1 | 67409138 | 67409144 | 7mer-m8 | 67409137 | 67409157 | 153 | -15.53 |
| ADediting_136147 | chr1_67409142_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-302f | chr1 | 67409139 | 67409145 | 7mer-m8 | 67409138 | 67409154 | 145 | -8.09 |
| ADediting_136148 | chr1_67409159_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-12114 | chr1 | 67409156 | 67409162 | 7mer-m8 | 67409155 | 67409172 | 155 | -22.4 |
| ADediting_136148 | chr1_67409159_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-3689d | chr1 | 67409154 | 67409160 | 7mer-m8 | 67409153 | 67409175 | 143 | -18.85 |
| ADediting_136148 | chr1_67409159_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-4443 | chr1 | 67409159 | 67409165 | 7mer-m8 | 67409158 | 67409175 | 143 | -15.73 |
| ADediting_136148 | chr1_67409159_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-6851-5p | chr1 | 67409154 | 67409160 | 7mer-m8 | 67409153 | 67409178 | 150 | -24.97 |
| ADediting_136148 | chr1_67409159_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-6880-5p | chr1 | 67409157 | 67409163 | 7mer-m8 | 67409156 | 67409177 | 148 | -23.56 |
| ADediting_136148 | chr1_67409159_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-7847-3p | chr1 | 67409158 | 67409164 | 7mer-m8 | 67409157 | 67409177 | 145 | -18.48 |
| ADediting_136149 | chr1_67409166_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-17-3p | chr1 | 67409165 | 67409171 | 7mer-m8 | 67409164 | 67409185 | 150 | -18.74 |
| ADediting_136149 | chr1_67409166_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-6884-5p | chr1 | 67409161 | 67409167 | 7mer-m8 | 67409160 | 67409183 | 146 | -22.15 |
| ADediting_136151 | chr1_67409176_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-4324 | chr1 | 67409174 | 67409180 | 7mer-m8 | 67409173 | 67409192 | 146 | -12.25 |
| ADediting_1521425 | chr1_67409206_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-1262 | chr1 | 67409202 | 67409208 | 7mer-m8 | 67409201 | 67409222 | 140 | -17.58 |
| ADediting_1521425 | chr1_67409206_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-4701-3p | chr1 | 67409202 | 67409208 | 7mer-m8 | 67409201 | 67409220 | 149 | -18.27 |
| ADediting_1521425 | chr1_67409206_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-542-3p | chr1 | 67409205 | 67409211 | 7mer-m8 | 67409204 | 67409224 | 153 | -16.7 |
| ADediting_1521425 | chr1_67409206_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-6736-5p | chr1 | 67409202 | 67409208 | 7mer-m8 | 67409201 | 67409225 | 147 | -25.77 |
| ADediting_1521425 | chr1_67409206_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-6776-5p | chr1 | 67409201 | 67409207 | 7mer-m8 | 67409200 | 67409219 | 148 | -20.27 |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1391023 | chr8_140732605_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-151a-3p | chr1 | 67410085 | 67410092 | 8mer-1a | 67410085 | 67410106 | 162 | -18.2 |
| ADediting_1471004 | chr9_63819627_+ | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-4477b | chr1 | 67410693 | 67410700 | 8mer-1a | 67410693 | 67410714 | 149 | -12.07 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000142864.14 | ENST00000361219.10 | SERBP1-201 | hsa-miR-381-3p | chr1 | 67412525 | 67412531 | 7mer-m8 | 67412524 | 67412546 | 161 | -21.87 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-381-3p | chr1 | 67412525 | 67412531 | 7mer-m8 | 67412524 | 67412546 | 161 | -21.87 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000142864.14 | ENST00000370995.6 | SERBP1-204 | hsa-miR-381-3p | chr1 | 67412525 | 67412531 | 7mer-m8 | 67412524 | 67412546 | 161 | -21.87 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-381-3p | chr1 | 67411751 | 67411758 | 8mer-1a | 67411751 | 67411772 | 156 | -15.39 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000142864.14 | ENST00000370995.6 | SERBP1-204 | hsa-miR-381-3p | chr1 | 67411751 | 67411758 | 8mer-1a | 67411751 | 67411772 | 156 | -15.39 |
| ADediting_286380 | chr11_79422188_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-5579-3p | chr1 | 67409462 | 67409468 | 7mer-m8 | 67409461 | 67409481 | 144 | -17.05 |
| ADediting_291761 | chr11_93733708_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-1304-3p | chr1 | 67409935 | 67409942 | 8mer-1a | 67409935 | 67409956 | 142 | -15.74 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-4775 | chr1 | 67412221 | 67412228 | 8mer-1a | 67412221 | 67412245 | 147 | -13.84 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000142864.14 | ENST00000370995.6 | SERBP1-204 | hsa-miR-4775 | chr1 | 67412221 | 67412228 | 8mer-1a | 67412221 | 67412245 | 147 | -13.84 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-5585-3p | chr1 | 67411282 | 67411289 | 8mer-1a | 67411282 | 67411303 | 152 | -16.37 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000142864.14 | ENST00000370995.6 | SERBP1-204 | hsa-miR-5585-3p | chr1 | 67411282 | 67411289 | 8mer-1a | 67411282 | 67411303 | 152 | -16.37 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000142864.14 | ENST00000361219.10 | SERBP1-201 | hsa-miR-5585-3p | chr1 | 67413086 | 67413092 | 7mer-m8 | 67413085 | 67413106 | 157 | -16.53 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000142864.14 | ENST00000370990.5 | SERBP1-202 | hsa-miR-5585-3p | chr1 | 67413086 | 67413092 | 7mer-m8 | 67413085 | 67413106 | 157 | -16.53 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-5585-3p | chr1 | 67413086 | 67413092 | 7mer-m8 | 67413085 | 67413106 | 157 | -16.53 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000142864.14 | ENST00000370995.6 | SERBP1-204 | hsa-miR-5585-3p | chr1 | 67413086 | 67413092 | 7mer-m8 | 67413085 | 67413106 | 157 | -16.53 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_107020 | chr1_37500952_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-5581-3p | chr1 | 67408126 | 67408133 | 8mer-1a | 67408126 | 67408147 | 155 | -20.32 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-589-3p | chr1 | 67411513 | 67411519 | 7mer-m8 | 67411512 | 67411535 | 146 | -16.37 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-589-3p | chr1 | 67412279 | 67412285 | 7mer-m8 | 67412278 | 67412301 | 140 | -8.76 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000142864.14 | ENST00000370995.6 | SERBP1-204 | hsa-miR-589-3p | chr1 | 67411513 | 67411519 | 7mer-m8 | 67411512 | 67411535 | 146 | -16.37 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000142864.14 | ENST00000370995.6 | SERBP1-204 | hsa-miR-589-3p | chr1 | 67412279 | 67412285 | 7mer-m8 | 67412278 | 67412301 | 140 | -8.76 |
| ADediting_1471003 | chr9_63819626_+ | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-4477b | chr1 | 67408162 | 67408169 | 8mer-1a | 67408162 | 67408183 | 140 | -6.84 |
| ADediting_1471004 | chr9_63819627_+ | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-4477b | chr1 | 67408162 | 67408169 | 8mer-1a | 67408162 | 67408183 | 140 | -6.84 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-381-3p | chr1 | 67408305 | 67408312 | 8mer-1a | 67408305 | 67408327 | 145 | -15.46 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-381-3p | chr1 | 67409348 | 67409355 | 8mer-1a | 67409348 | 67409369 | 144 | -9.69 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-381-3p | chr1 | 67410574 | 67410580 | 7mer-m8 | 67410573 | 67410596 | 147 | -8.8 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-381-3p | chr1 | 67408305 | 67408312 | 8mer-1a | 67408305 | 67408327 | 145 | -15.46 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-381-3p | chr1 | 67409348 | 67409355 | 8mer-1a | 67409348 | 67409369 | 144 | -9.69 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-381-3p | chr1 | 67410574 | 67410580 | 7mer-m8 | 67410573 | 67410596 | 147 | -8.8 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-641 | chr1 | 67410225 | 67410231 | 7mer-m8 | 67410224 | 67410244 | 145 | -13.38 |
| ADediting_1596844 | chr1_162342605_+ | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-556-3p | chr1 | 67411082 | 67411089 | 8mer-1a | 67411082 | 67411104 | 144 | -9.46 |
| ADediting_1596844 | chr1_162342605_+ | ENSG00000142864.14 | ENST00000370995.6 | SERBP1-204 | hsa-miR-556-3p | chr1 | 67411082 | 67411089 | 8mer-1a | 67411082 | 67411104 | 144 | -9.46 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-641 | chr1 | 67410225 | 67410231 | 7mer-m8 | 67410224 | 67410244 | 145 | -13.38 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000142864.14 | ENST00000361219.10 | SERBP1-201 | hsa-miR-4775 | chr1 | 67413116 | 67413122 | 7mer-1a | 67413116 | 67413136 | 140 | -11.17 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000142864.14 | ENST00000370990.5 | SERBP1-202 | hsa-miR-4775 | chr1 | 67413116 | 67413122 | 7mer-1a | 67413116 | 67413136 | 140 | -11.17 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-4775 | chr1 | 67408607 | 67408613 | 7mer-1a | 67408607 | 67408628 | 145 | -15.74 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-4775 | chr1 | 67411938 | 67411944 | 7mer-m8 | 67411937 | 67411958 | 149 | -9.09 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000142864.14 | ENST00000370994.8 | SERBP1-203 | hsa-miR-4775 | chr1 | 67413116 | 67413122 | 7mer-1a | 67413116 | 67413136 | 140 | -11.17 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000142864.14 | ENST00000370995.6 | SERBP1-204 | hsa-miR-4775 | chr1 | 67411938 | 67411944 | 7mer-m8 | 67411937 | 67411958 | 149 | -9.09 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000142864.14 | ENST00000370995.6 | SERBP1-204 | hsa-miR-4775 | chr1 | 67413116 | 67413122 | 7mer-1a | 67413116 | 67413136 | 140 | -11.17 |
| Differentially expressed gene-miRNA network |
Top |
The effects of the RNA editing to the stability of the RNA structures for SERBP1 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000370994.8 | protein_coding |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_136137 | ENST00000370994.8 | chr1_67409006_- | 5480 | -1899.90 | -1895.00 | -1909.20 |
| ADediting_136138 | ENST00000370994.8 | chr1_67409008_- | 5478 | -1894.60 | -1895.00 | -1909.20 |
| ADediting_136139 | ENST00000370994.8 | chr1_67409013_- | 5473 | -1894.60 | -1895.00 | -1909.20 |
| ADediting_136140 | ENST00000370994.8 | chr1_67409014_- | 5472 | -1898.40 | -1895.00 | -1909.20 |
| ADediting_136141 | ENST00000370994.8 | chr1_67409018_- | 5468 | -1894.10 | -1895.00 | -1909.20 |
| ADediting_136142 | ENST00000370994.8 | chr1_67409022_- | 5464 | -1894.30 | -1895.00 | -1909.20 |
| ADediting_136143 | ENST00000370994.8 | chr1_67409042_- | 5444 | -1895.00 | -1895.00 | -1909.20 |
| ADediting_136144 | ENST00000370994.8 | chr1_67409043_- | 5443 | -1894.50 | -1895.00 | -1909.20 |
| ADediting_136145 | ENST00000370994.8 | chr1_67409048_- | 5438 | -1898.60 | -1895.00 | -1909.20 |
| ADediting_136146 | ENST00000370994.8 | chr1_67409051_- | 5435 | -1895.00 | -1895.00 | -1909.20 |
| ADediting_136147 | ENST00000370994.8 | chr1_67409142_- | 5344 | -1899.20 | -1895.00 | -1909.20 |
| ADediting_136148 | ENST00000370994.8 | chr1_67409159_- | 5327 | -1894.60 | -1895.00 | -1909.20 |
| ADediting_136149 | ENST00000370994.8 | chr1_67409166_- | 5320 | -1894.20 | -1895.00 | -1909.20 |
| ADediting_136150 | ENST00000370994.8 | chr1_67409171_- | 5315 | -1894.60 | -1895.00 | -1909.20 |
| ADediting_136151 | ENST00000370994.8 | chr1_67409176_- | 5310 | -1898.60 | -1895.00 | -1909.20 |
| ADediting_136152 | ENST00000370994.8 | chr1_67409181_- | 5305 | -1894.40 | -1895.00 | -1909.20 |
| ADediting_136153 | ENST00000370994.8 | chr1_67409184_- | 5302 | -1895.30 | -1895.00 | -1909.20 |
| ADediting_1521425 | ENST00000370994.8 | chr1_67409206_- | 5280 | -1894.60 | -1895.00 | -1909.20 |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for SERBP1 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| CER | ADediting_136139 | chr1_67409013_- | 4.63680435871161e-05 | 0.326163828369797 | 4.27976337714478e-06 | 0.365364934944119 | 0.317711994649972 | 0.0821310880696842 |
| TCX | ADediting_136139 | chr1_67409013_- | 8.00637058733136e-05 | 0.31637782285731 | 5.10409959407429e-08 | 0.426895720977611 | 0.0606368330114908 | -0.153560473648642 |
| TCX | ADediting_136145 | chr1_67409048_- | 0.000156153376247915 | 0.303930111451505 | 0.648745494171276 | 0.0374924419177954 | 0.0378736564858056 | 0.16971058048461 |
| DLPFC | ADediting_136161 | chr1_67413869_- | 0.324159310713642 | -0.0561807225365393 | 0.00373291743334513 | -0.164246328344152 | 6.40489126059707e-09 | 0.322214655631602 |
| DLPFC | ADediting_136163 | chr1_67413899_- | 0.245559868691223 | 0.066146790913919 | 0.0772239436657322 | -0.100512057341929 | 3.65263774970725e-17 | 0.453935367047686 |
| DLPFC | ADediting_136174 | chr1_67414013_- | 0.205719694989114 | 0.0720688537326012 | 0.834257782185981 | -0.0119320388602058 | 1.24665342170776e-09 | 0.336248816707851 |
| DLPFC | ADediting_136195 | chr1_67418061_- | 0.849539636938277 | 0.0108179548534398 | 0.149669400678266 | -0.0820196880241395 | 3.58740499128042e-09 | 0.327267028871981 |
| DLPFC | ADediting_136212 | chr1_67418556_- | 0.557766737604537 | -0.0334174560852494 | 0.065161662358735 | -0.104875191686236 | 1.78992052240101e-08 | 0.313020457679799 |
| DLPFC | ADediting_136216 | chr1_67418593_- | 0.646501975439713 | -0.0261494512132938 | 0.105903959818847 | -0.0920094762140362 | 1.57790041583052e-08 | 0.314165291861193 |
| DLPFC | ADediting_136217 | chr1_67418596_- | 0.995860015419812 | 0.000295895086946427 | 0.199469301861951 | -0.0730709323255968 | 1.71186491334522e-10 | 0.352379618398651 |
| DLPFC | ADediting_136218 | chr1_67418637_- | 0.499841004600659 | 0.0384638539634155 | 0.135302812864755 | -0.0850156728155703 | 2.00988224370932e-13 | 0.401294995126324 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 1.36158722513241e-76 | 0.819915682760107 | 9.29491226682262e-50 | 0.714776811700515 | 3.87462903872536e-05 | 0.231460379662928 |
| AC | 2.83454825559996e-87 | 0.891539489012271 | 3.39750900310685e-46 | 0.748797893182426 | 9.65140199868279e-19 | 0.520278735567856 |
| PCC | 2.03165003213803e-40 | 0.780519732177424 | 1.23706518082729e-35 | 0.749051925593028 | 0.000701973145857975 | 0.243112090376432 |
| CER | 5.07166585409116e-53 | 0.892444975662487 | 2.45220131037751e-27 | 0.740600812490236 | 0.0343029008443042 | 0.172953258483214 |
| TCX | 3.0290700068352e-36 | 0.810793029649173 | 2.67178552743248e-05 | 0.335713008198753 | 3.12110055434331e-08 | 0.433025155778841 |
| FP | 4.15395355642954e-20 | 0.617700766319746 | 5.29621812778343e-05 | 0.29815302889622 | 0.000199145281216638 | 0.275363094820824 |
| IFG | 9.07059255222627e-07 | 0.810436949061409 | 0.00217147984887822 | 0.58409912481926 | 0.207768006361873 | 0.260911610816274 |
| PG | 5.69321298425453e-50 | 0.836593731600558 | 8.73844281254853e-17 | 0.560597749853438 | 0.105048314847293 | 0.119226435921549 |
| STG | 5.71293276663039e-06 | 0.472383562218452 | 0.0529644886929341 | 0.211919241211497 | 0.621290851981613 | 0.054681165441237 |
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Relation with AD stages for SERBP1 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| TCX | 2.01015061127439e-07 | 0.479341985233444 |
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RelatedDrugs for SERBP1 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SERBP1 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
| SERBP1 | C0024623 | Malignant neoplasm of stomach | 1 | CTD_human |
| SERBP1 | C0038356 | Stomach Neoplasms | 1 | CTD_human |
| SERBP1 | C0235874 | Disease Exacerbation | 1 | CTD_human |
| SERBP1 | C1708349 | Hereditary Diffuse Gastric Cancer | 1 | CTD_human |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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