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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for CHTOP |
 Gene summary |
| Gene information | Gene symbol | CHTOP | Gene ID | 26097 |
| Gene name | chromatin target of PRMT1 | |
| Synonyms | C10orf77|C1orf77|FL-SRAG|FOP|SRAG|SRAG-3|SRAG-5|pp7704 | |
| Cytomap | 1q21.3 | |
| Type of gene | protein-coding | |
| Description | chromatin target of PRMT1 proteinfriend of PRMT1 proteinsmall protein rich in arginine and glycine | |
| Modification date | 20200313 | |
| UniProtAcc | Q9Y3Y2, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
| CHTOP | GO:0006406 | mRNA export from nucleus | 23299939 |
| CHTOP | GO:0032781 | positive regulation of ATPase activity | 23299939 |
| CHTOP | GO:0051096 | positive regulation of helicase activity | 23299939 |
Top |
RNA A-to-I events for CHTOP |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_26325(153634931, +), ADediting_26326(153635112, +), ADediting_26327(153635565, +), ADediting_26328(153635566, +), ADediting_26329(153635729, +), ADediting_26330(153637395, +), ADediting_26331(153637525, +), ADediting_26332(153637528, +), ADediting_26333(153638945, +), ADediting_26334(153638955, +), ADediting_26335(153638961, +), ADediting_26336(153638982, +), ADediting_26337(153638985, +), ADediting_26338(153639008, +), ADediting_26339(153639010, +), ADediting_26340(153639020, +), ADediting_26341(153639021, +), ADediting_26342(153639022, +), ADediting_26343(153639038, +), ADediting_26344(153639064, +), ADediting_26345(153639072, +), ADediting_26346(153639085, +), ADediting_26347(153639088, +), ADediting_26348(153639142, +), ADediting_26349(153639143, +), ADediting_26350(153639811, +), ADediting_26351(153639831, +), ADediting_26352(153639856, +), ADediting_26353(153639861, +), ADediting_26354(153639862, +), ADediting_26355(153639871, +), ADediting_26356(153639891, +), ADediting_26357(153639892, +), ADediting_26358(153639913, +), ADediting_26359(153639915, +), ADediting_26360(153639931, +), ADediting_26361(153639954, +), ADediting_26362(153639957, +), ADediting_26363(153639983, +), ADediting_26364(153639985, +), ADediting_26365(153640008, +), ADediting_26366(153640009, +), ADediting_26367(153640026, +), ADediting_26368(153640035, +), ADediting_26369(153640048, +), ADediting_26370(153640121, +), ADediting_26371(153640220, +), ADediting_26372(153640241, +), ADediting_26373(153640242, +), ADediting_26374(153640246, +), ADediting_26375(153640260, +), ADediting_26376(153640265, +), ADediting_26377(153640288, +), ADediting_26378(153640289, +), ADediting_26379(153640297, +), ADediting_26380(153640298, +), ADediting_26381(153640299, +), ADediting_26382(153640304, +), ADediting_26383(153640318, +), ADediting_26384(153640322, +), ADediting_26385(153640323, +), ADediting_26386(153640334, +), ADediting_26387(153640353, +), ADediting_26388(153640366, +), ADediting_26389(153640381, +), ADediting_26390(153640390, +), ADediting_26391(153640394, +), ADediting_26392(153640398, +), ADediting_26393(153640506, +), ADediting_26394(153640518, +), ADediting_26395(153640524, +), ADediting_26396(153640525, +), ADediting_26397(153640551, +), ADediting_26398(153640565, +), ADediting_26399(153640570, +), ADediting_26400(153640578, +), ADediting_26401(153640579, +), ADediting_26402(153640593, +), ADediting_26403(153640594, +), ADediting_26404(153640596, +), ADediting_26405(153640601, +), ADediting_26406(153640602, +), ADediting_26407(153640629, +), ADediting_26408(153640641, +), ADediting_26409(153640650, +), ADediting_26410(153640651, +), ADediting_26411(153640656, +), ADediting_26412(153640660, +), ADediting_26413(153640673, +), ADediting_26414(153640677, +), ADediting_26415(153640683, +), ADediting_26416(153640691, +), ADediting_26417(153640692, +), ADediting_26418(153640699, +), ADediting_26419(153640701, +), ADediting_26420(153640716, +), ADediting_26421(153640720, +), ADediting_26422(153640721, +), ADediting_26423(153640750, +), ADediting_1515045(153637527, +), ADediting_1515046(153637563, +), ADediting_1515047(153638936, +), ADediting_1515048(153639042, +), ADediting_1515049(153639842, +), ADediting_1515050(153639939, +), ADediting_1515051(153639995, +), ADediting_1515052(153640317, +), ADediting_1515053(153640321, +), ADediting_1515054(153640414, +), ADediting_1515055(153640533, +), ADediting_1515056(153640584, +), ADediting_1515057(153640621, +), ADediting_1515058(153640624, +), ADediting_1515059(153640723, +), ADediting_1515060(153640736, +), ADediting_1596513(153637589, +), ADediting_1596514(153637598, +), ADediting_1596515(153639909, +), ADediting_1596516(153640061, +), ADediting_1596517(153640276, +), ADediting_1596518(153640751, +), |
Top |
RNA editing positional annotations for CHTOP using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_26325 | chr1_153634931_+ | intronic |
| ADediting_26326 | chr1_153635112_+ | intronic |
| ADediting_26327 | chr1_153635565_+ | intronic |
| ADediting_26328 | chr1_153635566_+ | intronic |
| ADediting_26329 | chr1_153635729_+ | intronic |
| ADediting_26330 | chr1_153637395_+ | intronic |
| ADediting_26331 | chr1_153637525_+ | intronic |
| ADediting_26332 | chr1_153637528_+ | intronic |
| ADediting_26333 | chr1_153638945_+ | intronic |
| ADediting_26334 | chr1_153638955_+ | intronic |
| ADediting_26335 | chr1_153638961_+ | intronic |
| ADediting_26336 | chr1_153638982_+ | intronic |
| ADediting_26337 | chr1_153638985_+ | intronic |
| ADediting_26338 | chr1_153639008_+ | intronic |
| ADediting_26339 | chr1_153639010_+ | intronic |
| ADediting_26340 | chr1_153639020_+ | intronic |
| ADediting_26341 | chr1_153639021_+ | intronic |
| ADediting_26342 | chr1_153639022_+ | intronic |
| ADediting_26343 | chr1_153639038_+ | intronic |
| ADediting_26344 | chr1_153639064_+ | intronic |
| ADediting_26345 | chr1_153639072_+ | intronic |
| ADediting_26346 | chr1_153639085_+ | intronic |
| ADediting_26347 | chr1_153639088_+ | intronic |
| ADediting_26348 | chr1_153639142_+ | intronic |
| ADediting_26349 | chr1_153639143_+ | intronic |
| ADediting_26350 | chr1_153639811_+ | intronic |
| ADediting_26351 | chr1_153639831_+ | intronic |
| ADediting_26352 | chr1_153639856_+ | intronic |
| ADediting_26353 | chr1_153639861_+ | intronic |
| ADediting_26354 | chr1_153639862_+ | intronic |
| ADediting_26355 | chr1_153639871_+ | intronic |
| ADediting_26356 | chr1_153639891_+ | intronic |
| ADediting_26357 | chr1_153639892_+ | intronic |
| ADediting_26358 | chr1_153639913_+ | intronic |
| ADediting_26359 | chr1_153639915_+ | intronic |
| ADediting_26360 | chr1_153639931_+ | intronic |
| ADediting_26361 | chr1_153639954_+ | intronic |
| ADediting_26362 | chr1_153639957_+ | intronic |
| ADediting_26363 | chr1_153639983_+ | intronic |
| ADediting_26364 | chr1_153639985_+ | intronic |
| ADediting_26365 | chr1_153640008_+ | intronic |
| ADediting_26366 | chr1_153640009_+ | intronic |
| ADediting_26367 | chr1_153640026_+ | intronic |
| ADediting_26368 | chr1_153640035_+ | intronic |
| ADediting_26369 | chr1_153640048_+ | intronic |
| ADediting_26370 | chr1_153640121_+ | intronic |
| ADediting_26371 | chr1_153640220_+ | intronic |
| ADediting_26372 | chr1_153640241_+ | intronic |
| ADediting_26373 | chr1_153640242_+ | intronic |
| ADediting_26374 | chr1_153640246_+ | intronic |
| ADediting_26375 | chr1_153640260_+ | intronic |
| ADediting_26376 | chr1_153640265_+ | intronic |
| ADediting_26377 | chr1_153640288_+ | intronic |
| ADediting_26378 | chr1_153640289_+ | intronic |
| ADediting_26379 | chr1_153640297_+ | intronic |
| ADediting_26380 | chr1_153640298_+ | intronic |
| ADediting_26381 | chr1_153640299_+ | intronic |
| ADediting_26382 | chr1_153640304_+ | intronic |
| ADediting_26383 | chr1_153640318_+ | intronic |
| ADediting_26384 | chr1_153640322_+ | intronic |
| ADediting_26385 | chr1_153640323_+ | intronic |
| ADediting_26386 | chr1_153640334_+ | intronic |
| ADediting_26387 | chr1_153640353_+ | intronic |
| ADediting_26388 | chr1_153640366_+ | intronic |
| ADediting_26389 | chr1_153640381_+ | intronic |
| ADediting_26390 | chr1_153640390_+ | intronic |
| ADediting_26391 | chr1_153640394_+ | intronic |
| ADediting_26392 | chr1_153640398_+ | intronic |
| ADediting_26393 | chr1_153640506_+ | intronic |
| ADediting_26394 | chr1_153640518_+ | intronic |
| ADediting_26395 | chr1_153640524_+ | intronic |
| ADediting_26396 | chr1_153640525_+ | intronic |
| ADediting_26397 | chr1_153640551_+ | intronic |
| ADediting_26398 | chr1_153640565_+ | intronic |
| ADediting_26399 | chr1_153640570_+ | intronic |
| ADediting_26400 | chr1_153640578_+ | intronic |
| ADediting_26401 | chr1_153640579_+ | intronic |
| ADediting_26402 | chr1_153640593_+ | intronic |
| ADediting_26403 | chr1_153640594_+ | intronic |
| ADediting_26404 | chr1_153640596_+ | intronic |
| ADediting_26405 | chr1_153640601_+ | intronic |
| ADediting_26406 | chr1_153640602_+ | intronic |
| ADediting_26407 | chr1_153640629_+ | intronic |
| ADediting_26408 | chr1_153640641_+ | intronic |
| ADediting_26409 | chr1_153640650_+ | intronic |
| ADediting_26410 | chr1_153640651_+ | intronic |
| ADediting_26411 | chr1_153640656_+ | intronic |
| ADediting_26412 | chr1_153640660_+ | intronic |
| ADediting_26413 | chr1_153640673_+ | intronic |
| ADediting_26414 | chr1_153640677_+ | intronic |
| ADediting_26415 | chr1_153640683_+ | intronic |
| ADediting_26416 | chr1_153640691_+ | intronic |
| ADediting_26417 | chr1_153640692_+ | intronic |
| ADediting_26418 | chr1_153640699_+ | intronic |
| ADediting_26419 | chr1_153640701_+ | intronic |
| ADediting_26420 | chr1_153640716_+ | intronic |
| ADediting_26421 | chr1_153640720_+ | intronic |
| ADediting_26422 | chr1_153640721_+ | intronic |
| ADediting_26423 | chr1_153640750_+ | intronic |
| ADediting_1515045 | chr1_153637527_+ | intronic |
| ADediting_1515046 | chr1_153637563_+ | intronic |
| ADediting_1515047 | chr1_153638936_+ | intronic |
| ADediting_1515048 | chr1_153639042_+ | intronic |
| ADediting_1515049 | chr1_153639842_+ | intronic |
| ADediting_1515050 | chr1_153639939_+ | intronic |
| ADediting_1515051 | chr1_153639995_+ | intronic |
| ADediting_1515052 | chr1_153640317_+ | intronic |
| ADediting_1515053 | chr1_153640321_+ | intronic |
| ADediting_1515054 | chr1_153640414_+ | intronic |
| ADediting_1515055 | chr1_153640533_+ | intronic |
| ADediting_1515056 | chr1_153640584_+ | intronic |
| ADediting_1515057 | chr1_153640621_+ | intronic |
| ADediting_1515058 | chr1_153640624_+ | intronic |
| ADediting_1515059 | chr1_153640723_+ | intronic |
| ADediting_1515060 | chr1_153640736_+ | intronic |
| ADediting_1596513 | chr1_153637589_+ | intronic |
| ADediting_1596514 | chr1_153637598_+ | intronic |
| ADediting_1596515 | chr1_153639909_+ | intronic |
| ADediting_1596516 | chr1_153640061_+ | intronic |
| ADediting_1596517 | chr1_153640276_+ | intronic |
| ADediting_1596518 | chr1_153640751_+ | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_26325 | chr1_153634931_+ | SINE | Alu | Name=AluSp |
| ADediting_26326 | chr1_153635112_+ | SINE | Alu | Name=AluSp |
| ADediting_26327 | chr1_153635565_+ | SINE | Alu | Name=AluSx3 |
| ADediting_26328 | chr1_153635566_+ | SINE | Alu | Name=AluSx3 |
| ADediting_26329 | chr1_153635729_+ | SINE | Alu | Name=AluSx3 |
| ADediting_26330 | chr1_153637395_+ | SINE | Alu | Name=AluSg |
| ADediting_26331 | chr1_153637525_+ | SINE | Alu | Name=AluSg |
| ADediting_26332 | chr1_153637528_+ | SINE | Alu | Name=AluSg |
| ADediting_26333 | chr1_153638945_+ | SINE | Alu | Name=AluYm1 |
| ADediting_26334 | chr1_153638955_+ | SINE | Alu | Name=AluYm1 |
| ADediting_26335 | chr1_153638961_+ | SINE | Alu | Name=AluYm1 |
| ADediting_26336 | chr1_153638982_+ | SINE | Alu | Name=AluYm1 |
| ADediting_26337 | chr1_153638985_+ | SINE | Alu | Name=AluYm1 |
| ADediting_26338 | chr1_153639008_+ | SINE | Alu | Name=AluYm1 |
| ADediting_26339 | chr1_153639010_+ | SINE | Alu | Name=AluYm1 |
| ADediting_26340 | chr1_153639020_+ | SINE | Alu | Name=AluYm1 |
| ADediting_26341 | chr1_153639021_+ | SINE | Alu | Name=AluYm1 |
| ADediting_26342 | chr1_153639022_+ | SINE | Alu | Name=AluYm1 |
| ADediting_26343 | chr1_153639038_+ | SINE | Alu | Name=AluYm1 |
| ADediting_26344 | chr1_153639064_+ | SINE | Alu | Name=AluYm1 |
| ADediting_26345 | chr1_153639072_+ | SINE | Alu | Name=AluYm1 |
| ADediting_26346 | chr1_153639085_+ | SINE | Alu | Name=AluYm1 |
| ADediting_26347 | chr1_153639088_+ | SINE | Alu | Name=AluYm1 |
| ADediting_26348 | chr1_153639142_+ | SINE | Alu | Name=AluYm1 |
| ADediting_26349 | chr1_153639143_+ | SINE | Alu | Name=AluYm1 |
| ADediting_26350 | chr1_153639811_+ | SINE | Alu | Name=AluSx1 |
| ADediting_26351 | chr1_153639831_+ | SINE | Alu | Name=AluSx1 |
| ADediting_26352 | chr1_153639856_+ | SINE | Alu | Name=AluSx1 |
| ADediting_26353 | chr1_153639861_+ | SINE | Alu | Name=AluSx1 |
| ADediting_26354 | chr1_153639862_+ | SINE | Alu | Name=AluSx1 |
| ADediting_26355 | chr1_153639871_+ | SINE | Alu | Name=AluSx1 |
| ADediting_26356 | chr1_153639891_+ | SINE | Alu | Name=AluSx1 |
| ADediting_26357 | chr1_153639892_+ | SINE | Alu | Name=AluSx1 |
| ADediting_26358 | chr1_153639913_+ | SINE | Alu | Name=AluSx1 |
| ADediting_26359 | chr1_153639915_+ | SINE | Alu | Name=AluSx1 |
| ADediting_26360 | chr1_153639931_+ | SINE | Alu | Name=AluSx1 |
| ADediting_26361 | chr1_153639954_+ | SINE | Alu | Name=AluSx1 |
| ADediting_26362 | chr1_153639957_+ | SINE | Alu | Name=AluSx1 |
| ADediting_26363 | chr1_153639983_+ | SINE | Alu | Name=AluSx1 |
| ADediting_26364 | chr1_153639985_+ | SINE | Alu | Name=AluSx1 |
| ADediting_26365 | chr1_153640008_+ | SINE | Alu | Name=AluSx1 |
| ADediting_26366 | chr1_153640009_+ | SINE | Alu | Name=AluSx1 |
| ADediting_26367 | chr1_153640026_+ | SINE | Alu | Name=AluSx1 |
| ADediting_26368 | chr1_153640035_+ | SINE | Alu | Name=AluSx1 |
| ADediting_26369 | chr1_153640048_+ | SINE | Alu | Name=AluSx1 |
| ADediting_26370 | chr1_153640121_+ | DNA | hAT-Charlie | Name=MER3 |
| ADediting_26371 | chr1_153640220_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26372 | chr1_153640241_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26373 | chr1_153640242_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26374 | chr1_153640246_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26375 | chr1_153640260_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26376 | chr1_153640265_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26377 | chr1_153640288_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26378 | chr1_153640289_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26379 | chr1_153640297_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26380 | chr1_153640298_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26381 | chr1_153640299_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26382 | chr1_153640304_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26383 | chr1_153640318_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26384 | chr1_153640322_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26385 | chr1_153640323_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26386 | chr1_153640334_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26387 | chr1_153640353_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26388 | chr1_153640366_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26389 | chr1_153640381_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26390 | chr1_153640390_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26391 | chr1_153640394_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26392 | chr1_153640398_+ | SINE | Alu | Name=AluSz6 |
| ADediting_26393 | chr1_153640506_+ | SINE | Alu | Name=AluSx |
| ADediting_26394 | chr1_153640518_+ | SINE | Alu | Name=AluSx |
| ADediting_26395 | chr1_153640524_+ | SINE | Alu | Name=AluSx |
| ADediting_26396 | chr1_153640525_+ | SINE | Alu | Name=AluSx |
| ADediting_26397 | chr1_153640551_+ | SINE | Alu | Name=AluSx |
| ADediting_26398 | chr1_153640565_+ | SINE | Alu | Name=AluSx |
| ADediting_26399 | chr1_153640570_+ | SINE | Alu | Name=AluSx |
| ADediting_26400 | chr1_153640578_+ | SINE | Alu | Name=AluSx |
| ADediting_26401 | chr1_153640579_+ | SINE | Alu | Name=AluSx |
| ADediting_26402 | chr1_153640593_+ | SINE | Alu | Name=AluSx |
| ADediting_26403 | chr1_153640594_+ | SINE | Alu | Name=AluSx |
| ADediting_26404 | chr1_153640596_+ | SINE | Alu | Name=AluSx |
| ADediting_26405 | chr1_153640601_+ | SINE | Alu | Name=AluSx |
| ADediting_26406 | chr1_153640602_+ | SINE | Alu | Name=AluSx |
| ADediting_26407 | chr1_153640629_+ | SINE | Alu | Name=AluSx |
| ADediting_26408 | chr1_153640641_+ | SINE | Alu | Name=AluSx |
| ADediting_26409 | chr1_153640650_+ | SINE | Alu | Name=AluSx |
| ADediting_26410 | chr1_153640651_+ | SINE | Alu | Name=AluSx |
| ADediting_26411 | chr1_153640656_+ | SINE | Alu | Name=AluSx |
| ADediting_26412 | chr1_153640660_+ | SINE | Alu | Name=AluSx |
| ADediting_26413 | chr1_153640673_+ | SINE | Alu | Name=AluSx |
| ADediting_26414 | chr1_153640677_+ | SINE | Alu | Name=AluSx |
| ADediting_26415 | chr1_153640683_+ | SINE | Alu | Name=AluSx |
| ADediting_26416 | chr1_153640691_+ | SINE | Alu | Name=AluSx |
| ADediting_26417 | chr1_153640692_+ | SINE | Alu | Name=AluSx |
| ADediting_26418 | chr1_153640699_+ | SINE | Alu | Name=AluSx |
| ADediting_26419 | chr1_153640701_+ | SINE | Alu | Name=AluSx |
| ADediting_26420 | chr1_153640716_+ | SINE | Alu | Name=AluSx |
| ADediting_26421 | chr1_153640720_+ | SINE | Alu | Name=AluSx |
| ADediting_26422 | chr1_153640721_+ | SINE | Alu | Name=AluSx |
| ADediting_26423 | chr1_153640750_+ | SINE | Alu | Name=AluSx |
| ADediting_1515045 | chr1_153637527_+ | SINE | Alu | Name=AluSg |
| ADediting_1515046 | chr1_153637563_+ | SINE | Alu | Name=AluSg |
| ADediting_1515047 | chr1_153638936_+ | SINE | Alu | Name=AluYm1 |
| ADediting_1515048 | chr1_153639042_+ | SINE | Alu | Name=AluYm1 |
| ADediting_1515049 | chr1_153639842_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1515050 | chr1_153639939_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1515051 | chr1_153639995_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1515052 | chr1_153640317_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1515053 | chr1_153640321_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1515054 | chr1_153640414_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1515055 | chr1_153640533_+ | SINE | Alu | Name=AluSx |
| ADediting_1515056 | chr1_153640584_+ | SINE | Alu | Name=AluSx |
| ADediting_1515057 | chr1_153640621_+ | SINE | Alu | Name=AluSx |
| ADediting_1515058 | chr1_153640624_+ | SINE | Alu | Name=AluSx |
| ADediting_1515059 | chr1_153640723_+ | SINE | Alu | Name=AluSx |
| ADediting_1515060 | chr1_153640736_+ | SINE | Alu | Name=AluSx |
| ADediting_1596513 | chr1_153637589_+ | SINE | Alu | Name=AluSg |
| ADediting_1596514 | chr1_153637598_+ | SINE | Alu | Name=AluSg |
| ADediting_1596515 | chr1_153639909_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1596516 | chr1_153640061_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1596517 | chr1_153640276_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1596518 | chr1_153640751_+ | SINE | Alu | Name=AluSx |
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RNA A-to-I editing events in the alternative splicing sites for CHTOP |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CHTOP |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for CHTOP |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for CHTOP |
| RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1515045 | chr1_153637527_+ | ENSG00000160679.13 | ENST00000495554.1 | CHTOP-206 | hsa-miR-638 | chr1 | 153637527 | 153637533 | 7mer-1a | 153637509 | 153637533 | 147 | -29.64 |
| ADediting_1596514 | chr1_153637598_+ | ENSG00000160679.13 | ENST00000495554.1 | CHTOP-206 | hsa-miR-149-5p | chr1 | 153637592 | 153637598 | 7mer-m8 | 153637574 | 153637599 | 151 | -24.26 |
| ADediting_26330 | chr1_153637395_+ | ENSG00000160679.13 | ENST00000495554.1 | CHTOP-206 | hsa-miR-8052 | chr1 | 153637394 | 153637400 | 7mer-1a | 153637382 | 153637400 | 148 | -29.06 |
| ADediting_26331 | chr1_153637525_+ | ENSG00000160679.13 | ENST00000495554.1 | CHTOP-206 | hsa-miR-10399-5p | chr1 | 153637523 | 153637529 | 7mer-m8 | 153637510 | 153637530 | 140 | -11.08 |
| ADediting_26331 | chr1_153637525_+ | ENSG00000160679.13 | ENST00000495554.1 | CHTOP-206 | hsa-miR-4269 | chr1 | 153637519 | 153637525 | 7mer-m8 | 153637506 | 153637526 | 155 | -21.89 |
| ADediting_26331 | chr1_153637525_+ | ENSG00000160679.13 | ENST00000495554.1 | CHTOP-206 | hsa-miR-6504-3p | chr1 | 153637523 | 153637529 | 7mer-m8 | 153637509 | 153637530 | 164 | -20.45 |
| ADediting_26331 | chr1_153637525_+ | ENSG00000160679.13 | ENST00000495554.1 | CHTOP-206 | hsa-miR-6715b-5p | chr1 | 153637519 | 153637525 | 7mer-m8 | 153637506 | 153637526 | 141 | -18.65 |
| ADediting_26331 | chr1_153637525_+ | ENSG00000160679.13 | ENST00000495554.1 | CHTOP-206 | hsa-miR-7151-3p | chr1 | 153637521 | 153637528 | 8mer-1a | 153637508 | 153637528 | 140 | -13.71 |
| ADediting_26332 | chr1_153637528_+ | ENSG00000160679.13 | ENST00000495554.1 | CHTOP-206 | hsa-miR-625-3p | chr1 | 153637523 | 153637529 | 7mer-m8 | 153637508 | 153637530 | 150 | -16.73 |
| ADediting_26332 | chr1_153637528_+ | ENSG00000160679.13 | ENST00000495554.1 | CHTOP-206 | hsa-miR-8052 | chr1 | 153637527 | 153637533 | 7mer-1a | 153637513 | 153637533 | 149 | -26.39 |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1515046 | chr1_153637563_+ | ENSG00000160679.13 | ENST00000495554.1 | CHTOP-206 | hsa-miR-8062 | chr1 | 153637559 | 153637565 | 7mer-m8 | 153637546 | 153637566 | 141 | -9.55 |
| ADediting_26330 | chr1_153637395_+ | ENSG00000160679.13 | ENST00000495554.1 | CHTOP-206 | hsa-miR-10399-5p | chr1 | 153637390 | 153637396 | 7mer-m8 | 153637376 | 153637397 | 144 | -11.88 |
| ADediting_26330 | chr1_153637395_+ | ENSG00000160679.13 | ENST00000495554.1 | CHTOP-206 | hsa-miR-5089-5p | chr1 | 153637394 | 153637400 | 7mer-m8 | 153637382 | 153637401 | 146 | -13.24 |
| ADediting_26331 | chr1_153637525_+ | ENSG00000160679.13 | ENST00000495554.1 | CHTOP-206 | hsa-miR-4423-3p | chr1 | 153637519 | 153637525 | 7mer-m8 | 153637506 | 153637526 | 140 | -14.3 |
| ADediting_26332 | chr1_153637528_+ | ENSG00000160679.13 | ENST00000495554.1 | CHTOP-206 | hsa-miR-5089-5p | chr1 | 153637527 | 153637533 | 7mer-m8 | 153637516 | 153637534 | 143 | -12.71 |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000160679.13 | ENST00000368686.1 | CHTOP-201 | hsa-miR-5688 | chr1 | 153643468 | 153643474 | 7mer-m8 | 153643454 | 153643475 | 145 | -14.99 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000160679.13 | ENST00000368686.1 | CHTOP-201 | hsa-miR-589-3p | chr1 | 153643817 | 153643823 | 7mer-1a | 153643799 | 153643823 | 153 | -32.94 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000160679.13 | ENST00000368690.7 | CHTOP-203 | hsa-miR-589-3p | chr1 | 153645609 | 153645616 | 8mer-1a | 153645593 | 153645616 | 158 | -17.57 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000160679.13 | ENST00000368694.8 | CHTOP-204 | hsa-miR-589-3p | chr1 | 153645609 | 153645616 | 8mer-1a | 153645593 | 153645616 | 158 | -17.57 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000160679.13 | ENST00000403433.5 | CHTOP-205 | hsa-miR-589-3p | chr1 | 153645609 | 153645616 | 8mer-1a | 153645593 | 153645616 | 158 | -17.57 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000160679.13 | ENST00000614256.4 | CHTOP-207 | hsa-miR-589-3p | chr1 | 153645609 | 153645616 | 8mer-1a | 153645593 | 153645616 | 158 | -17.57 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000160679.13 | ENST00000368686.1 | CHTOP-201 | hsa-miR-381-3p | chr1 | 153642874 | 153642881 | 8mer-1a | 153642860 | 153642881 | 150 | -18.03 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000160679.13 | ENST00000614256.4 | CHTOP-207 | hsa-miR-381-3p | chr1 | 153645146 | 153645152 | 7mer-m8 | 153645126 | 153645153 | 157 | -24.89 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000160679.13 | ENST00000368686.1 | CHTOP-201 | hsa-miR-5688 | chr1 | 153642501 | 153642507 | 7mer-m8 | 153642486 | 153642508 | 147 | -13 |
| ADediting_1337758 | chr7_5495892_- | ENSG00000160679.13 | ENST00000368686.1 | CHTOP-201 | hsa-miR-589-5p | chr1 | 153644129 | 153644135 | 7mer-m8 | 153644115 | 153644136 | 148 | -11.68 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000160679.13 | ENST00000368690.7 | CHTOP-203 | hsa-miR-381-3p | chr1 | 153646262 | 153646268 | 7mer-m8 | 153646248 | 153646269 | 141 | -13.1 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000160679.13 | ENST00000368694.8 | CHTOP-204 | hsa-miR-381-3p | chr1 | 153646262 | 153646268 | 7mer-m8 | 153646248 | 153646269 | 141 | -13.1 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000160679.13 | ENST00000403433.5 | CHTOP-205 | hsa-miR-381-3p | chr1 | 153646262 | 153646268 | 7mer-m8 | 153646248 | 153646269 | 141 | -13.1 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000160679.13 | ENST00000614256.4 | CHTOP-207 | hsa-miR-381-3p | chr1 | 153646262 | 153646268 | 7mer-m8 | 153646248 | 153646269 | 141 | -13.1 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000160679.13 | ENST00000368690.7 | CHTOP-203 | hsa-miR-381-3p | chr1 | 153646262 | 153646268 | 7mer-m8 | 153646248 | 153646269 | 141 | -13.1 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000160679.13 | ENST00000368694.8 | CHTOP-204 | hsa-miR-381-3p | chr1 | 153646262 | 153646268 | 7mer-m8 | 153646248 | 153646269 | 141 | -13.1 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000160679.13 | ENST00000403433.5 | CHTOP-205 | hsa-miR-381-3p | chr1 | 153646262 | 153646268 | 7mer-m8 | 153646248 | 153646269 | 141 | -13.1 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000160679.13 | ENST00000614256.4 | CHTOP-207 | hsa-miR-381-3p | chr1 | 153646262 | 153646268 | 7mer-m8 | 153646248 | 153646269 | 141 | -13.1 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000160679.13 | ENST00000368686.1 | CHTOP-201 | hsa-miR-641 | chr1 | 153642577 | 153642583 | 7mer-m8 | 153642561 | 153642584 | 140 | -10.77 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000160679.13 | ENST00000368686.1 | CHTOP-201 | hsa-miR-641 | chr1 | 153642577 | 153642583 | 7mer-m8 | 153642561 | 153642584 | 140 | -10.77 |
| ADediting_1643790 | chr3_121049689_+ | ENSG00000160679.13 | ENST00000368686.1 | CHTOP-201 | hsa-miR-5682 | chr1 | 153642778 | 153642784 | 7mer-m8 | 153642764 | 153642785 | 148 | -18.27 |
| Differentially expressed gene-miRNA network |
Top |
The effects of the RNA editing to the stability of the RNA structures for CHTOP |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000495554.1 | lncRNA |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_26330 | ENST00000495554.1 | chr1_153637395_+ | 1093 | -778.85 | -778.15 | -780.05 |
| ADediting_26331 | ENST00000495554.1 | chr1_153637525_+ | 1223 | -777.75 | -778.15 | -780.05 |
| ADediting_1515045 | ENST00000495554.1 | chr1_153637527_+ | 1225 | -779.35 | -778.15 | -780.05 |
| ADediting_26332 | ENST00000495554.1 | chr1_153637528_+ | 1226 | -779.95 | -778.15 | -780.05 |
| ADediting_1515046 | ENST00000495554.1 | chr1_153637563_+ | 1261 | -777.75 | -778.15 | -780.05 |
| ADediting_1596513 | ENST00000495554.1 | chr1_153637589_+ | 1287 | -777.45 | -778.15 | -780.05 |
| ADediting_1596514 | ENST00000495554.1 | chr1_153637598_+ | 1296 | -780.05 | -778.15 | -780.05 |
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Relation with ADAR for CHTOP |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | ADediting_26339 | chr1_153639010_+ | 0.0256119727636055 | 0.126771892208893 | 0.415107917502328 | 0.0464480087015618 | 7.26850881365767e-09 | 0.321099634178366 |
| DLPFC | ADediting_26340 | chr1_153639020_+ | 0.0253438493588914 | 0.127001501502559 | 0.837730930236244 | 0.0116784549513305 | 3.2181712669557e-16 | 0.441475652604945 |
| DLPFC | ADediting_26347 | chr1_153639088_+ | 0.0172077358690185 | 0.135226313751992 | 0.831578118944035 | 0.0121278486480965 | 6.54685302469846e-08 | 0.300952286389396 |
| CER | ADediting_26353 | chr1_153639861_+ | 2.33275866767956e-08 | 0.436596825133231 | 0.000548294882016899 | 0.278892538704116 | 0.657860633899317 | -0.0364530099271163 |
| TCX | ADediting_26353 | chr1_153639861_+ | 5.27439679978188e-05 | 0.323885609378028 | 0.113317309701147 | 0.129826997429403 | 0.00179808001855724 | 0.252846383766446 |
| DLPFC | ADediting_26354 | chr1_153639862_+ | 2.7614386802665e-08 | 0.309045797626572 | 0.000165497479244219 | 0.212340726136092 | 0.000107876939071211 | 0.218150436919883 |
| CER | ADediting_26354 | chr1_153639862_+ | 5.75171325536621e-05 | 0.322343425929994 | 0.109942786311039 | 0.131045713031241 | 0.233011601855604 | -0.0979634888646492 |
| CER | ADediting_26360 | chr1_153639931_+ | 0.000133538962365335 | 0.306895233717682 | 0.0963634184273809 | 0.136268491173623 | 0.949707090787846 | -0.00519343139828657 |
| STG | ADediting_26360 | chr1_153639931_+ | 2.35610177572559e-07 | 0.528635355186676 | 0.0157129963570854 | 0.26284072645003 | 0.0404730736825073 | 0.224058482705054 |
| CER | ADediting_26361 | chr1_153639954_+ | 1.78561429889962e-05 | 0.342499427374694 | 0.0169608135408706 | 0.194702488682192 | 0.867819814296258 | 0.0137028157508664 |
| TCX | ADediting_26361 | chr1_153639954_+ | 0.000341719536447379 | 0.288589753832131 | 0.654726727506894 | 0.0368097230613328 | 1.18482868673041e-06 | 0.384524487169126 |
| DLPFC | ADediting_26362 | chr1_153639957_+ | 0.00016695007154149 | 0.21222045791664 | 0.0429540236669863 | 0.11504714727759 | 7.60443553246412e-09 | 0.320700256258928 |
| CER | ADediting_26362 | chr1_153639957_+ | 2.08150020987368e-05 | 0.339935968626788 | 0.00556064394243959 | 0.22534942173908 | 0.198279214905685 | 0.105629324573074 |
| TCX | ADediting_26362 | chr1_153639957_+ | 0.000151960498163295 | 0.304448248880766 | 0.956419427916833 | 0.00449955456849283 | 4.56133399359971e-07 | 0.39801734557518 |
| CER | ADediting_26363 | chr1_153639983_+ | 1.77327149247093e-09 | 0.466536042460391 | 7.98660494234663e-05 | 0.316422875123582 | 0.617933864815756 | 0.0410515164773673 |
| CER | ADediting_26367 | chr1_153640026_+ | 1.59316932612132e-07 | 0.412226041465288 | 0.0016260286816081 | 0.255156068655217 | 0.202052902402699 | 0.104751952023314 |
| TCX | ADediting_26367 | chr1_153640026_+ | 8.90285263636964e-06 | 0.353861343581591 | 0.401620765031088 | 0.0689774424718723 | 0.00137214932247449 | 0.259007988605642 |
| CER | ADediting_26372 | chr1_153640241_+ | 2.70887803464585e-07 | 0.405138366957964 | 0.000645583340831745 | 0.275459547972595 | 0.188252624920828 | 0.108020841837644 |
| TCX | ADediting_26372 | chr1_153640241_+ | 0.000530024804392799 | 0.279599317113071 | 0.547004000402562 | 0.0495583132599023 | 9.79898947997222e-05 | 0.312670804889489 |
| DLPFC | ADediting_26373 | chr1_153640242_+ | 0.0308925646767731 | 0.12262430435298 | 0.508259513775285 | 0.0377125089700404 | 3.59291838915167e-09 | 0.327253764784057 |
| CER | ADediting_26373 | chr1_153640242_+ | 1.41479731893031e-09 | 0.469027509521872 | 0.000106045225155049 | 0.311207951890433 | 0.150908797545941 | 0.117852542116905 |
| CER | ADediting_26374 | chr1_153640246_+ | 2.44718245607121e-06 | 0.373854180751034 | 0.00616427414867967 | 0.222679081729262 | 0.942402901346542 | 0.00594890664036247 |
| CER | ADediting_26376 | chr1_153640265_+ | 4.06184906868377e-06 | 0.366168917668785 | 0.0237994141114197 | 0.184512914093045 | 0.993389767501118 | 0.00068215698955372 |
| CER | ADediting_26379 | chr1_153640297_+ | 6.0721561626263e-06 | 0.359926604921562 | 0.0307991952248697 | 0.176425580016228 | 0.877832352522004 | -0.0126563690397145 |
| DLPFC | ADediting_26386 | chr1_153640334_+ | 0.135841681591264 | 0.0848990033113897 | 0.752896695273858 | -0.0179517762035008 | 2.01843161876644e-08 | 0.311924903163969 |
| CER | ADediting_26386 | chr1_153640334_+ | 0.000166774403778937 | 0.302673446693066 | 0.132043191523694 | 0.123533907230709 | 0.643167693243883 | -0.0381314212480397 |
| CER | ADediting_26391 | chr1_153640394_+ | 3.95040361666397e-13 | 0.547949957690177 | 2.23977892841231e-08 | 0.437092560457817 | 0.843770351851233 | -0.0162256250462675 |
| CER | ADediting_26392 | chr1_153640398_+ | 7.45786763338784e-11 | 0.499787681163658 | 2.6570482095189e-07 | 0.405399214669246 | 0.345264690942151 | -0.0775949458950205 |
| DLPFC | ADediting_26397 | chr1_153640551_+ | 4.14964589259865e-08 | 0.30525790703259 | 0.000970844616933035 | 0.1864689879466 | 1.81953060828214e-08 | 0.312871113344037 |
| CER | ADediting_26397 | chr1_153640551_+ | 1.68083958224707e-11 | 0.514268131694434 | 1.30025969534854e-05 | 0.347732331492131 | 0.695991322681184 | -0.0321643908305574 |
| TCX | ADediting_26397 | chr1_153640551_+ | 0.0014374630668344 | 0.257958578504628 | 0.479963920314628 | -0.0581114662851705 | 1.4975862856339e-08 | 0.441956183704248 |
| CER | ADediting_26398 | chr1_153640565_+ | 5.36743160456328e-05 | 0.323575021220151 | 0.0012333349575383 | 0.261398979847751 | 0.722962397804406 | -0.0291829629414457 |
| CER | ADediting_26399 | chr1_153640570_+ | 0.000149414716762306 | 0.304769383360689 | 0.0117738884642774 | 0.205186590943236 | 0.658026359399351 | 0.0364341653440705 |
| CER | ADediting_26400 | chr1_153640578_+ | 4.42503981513998e-08 | 0.428687373516356 | 0.000996446396909663 | 0.26611532965324 | 0.461162450331927 | -0.0606221758442369 |
| TCX | ADediting_26400 | chr1_153640578_+ | 0.00385903339708745 | 0.234584627007694 | 0.859239655415546 | 0.0146012996895146 | 3.33797583610606e-05 | 0.331894836105236 |
| CER | ADediting_26401 | chr1_153640579_+ | 8.54222538766415e-05 | 0.315194468693621 | 0.0210526794422086 | 0.188256247679995 | 0.397948010319905 | 0.069515763909792 |
| TCX | ADediting_26401 | chr1_153640579_+ | 0.372340324257761 | 0.073354964049756 | 0.0770038106152421 | -0.144833797758612 | 1.75803518969184e-05 | 0.342758414456933 |
| DLPFC | ADediting_26407 | chr1_153640629_+ | 0.276856745548148 | 0.0619515251624965 | 0.133168585221438 | -0.0854812915978646 | 1.10497050274623e-14 | 0.42006812326325 |
| CER | ADediting_26408 | chr1_153640641_+ | 7.27342429363765e-05 | 0.318122518309987 | 0.00353711533420559 | 0.236736275925132 | 0.665868150319346 | -0.0355446165452734 |
| TCX | ADediting_26408 | chr1_153640641_+ | 0.0194816214559588 | 0.19059112400178 | 0.615585015676534 | 0.0413258942417024 | 8.4720756038385e-05 | 0.315345367033516 |
| CER | ADediting_26409 | chr1_153640650_+ | 5.95070285947696e-06 | 0.360243428356308 | 0.0321588358229788 | 0.175040185853444 | 0.868455945360351 | 0.0136362679282746 |
| DLPFC | ADediting_26410 | chr1_153640651_+ | 0.0190211587908839 | 0.133138006397309 | 0.81539714055688 | 0.0133133503460548 | 5.70310147543878e-10 | 0.342713016942638 |
| CER | ADediting_26410 | chr1_153640651_+ | 2.03332449692686e-05 | 0.340328934188221 | 0.0951376660244959 | 0.13676795600926 | 0.978354468728378 | 0.00223400257605116 |
| TCX | ADediting_26410 | chr1_153640651_+ | 0.164366955260515 | 0.114119968948959 | 0.211484779180924 | -0.102609545487012 | 3.56324719807112e-06 | 0.36817430089232 |
| DLPFC | ADediting_26412 | chr1_153640660_+ | 3.98943541268289e-06 | 0.258518300237879 | 0.0409093129198876 | 0.116192655643062 | 1.10817826550696e-12 | 0.389667893207731 |
| CER | ADediting_26412 | chr1_153640660_+ | 1.36446413338547e-05 | 0.346943198743416 | 0.0350540790108681 | 0.172248184843931 | 0.998571000274049 | 0.000147467071592758 |
| TCX | ADediting_26412 | chr1_153640660_+ | 0.906928720343837 | 0.00962624195638081 | 0.0857534175407478 | -0.140771586973832 | 0.000171391265911643 | 0.302150284294309 |
| DLPFC | ADediting_26421 | chr1_153640720_+ | 3.47585707038544e-09 | 0.327539718832047 | 8.91205606848051e-06 | 0.24930194324677 | 3.37316004275594e-09 | 0.327798373862778 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 9.1876507052107e-67 | 0.787702041140714 | 2.93902589099427e-64 | 0.778472797190736 | 1.13123649736556e-09 | 0.337060015138864 |
| AC | 6.38322263378218e-72 | 0.852797176950891 | 1.94939868493899e-43 | 0.733269727210261 | 1.17412290454494e-19 | 0.531838004522323 |
| PCC | 1.42389668159661e-23 | 0.641929617487285 | 3.5773753825768e-24 | 0.648493847530508 | 0.00251320864534484 | 0.217450926381758 |
| CER | 9.59225748382407e-46 | 0.86304695770886 | 1.31755353908582e-25 | 0.723644057878361 | 0.224311439920531 | 0.0998030119365066 |
| TCX | 1.99286271666062e-24 | 0.711310299471348 | 0.00118432770810645 | 0.262302190873871 | 4.51721451834031e-15 | 0.583725171719465 |
| FP | 2.77719767537155e-24 | 0.667143412879334 | 1.99153569994746e-20 | 0.62181529080187 | 7.38008123203498e-05 | 0.292623069757655 |
| IFG | 0.0043888961648651 | 0.550067434349842 | 0.0116858074300296 | 0.495979782058606 | 0.109438977106235 | 0.328007151592724 |
| PG | 1.61666906235036e-45 | 0.815228337445299 | 8.6308749605142e-21 | 0.615682915470482 | 0.0599419491415124 | 0.138206766178523 |
| STG | 1.22974642916201e-12 | 0.679218862814747 | 3.26847057132018e-05 | 0.43678896711661 | 0.0644671275873672 | 0.202673111056756 |
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Relation with AD stages for CHTOP |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| TCX | ADediting_26353 | chr1_153639861_+ | 2.36231499113778e-05 | 0.398222230692458 |
| TCX | ADediting_26361 | chr1_153639954_+ | 0.00042912482914843 | 0.336020222343645 |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| TCX | 2.53627180654354e-07 | 0.475834840928279 |
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RelatedDrugs for CHTOP |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CHTOP |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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