|
||||||
|
 | |
| |
| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
| |
| |
| The effects of the RNA editing to the stability of the RNA structures |
| |
| |
| |
|
Gene summary for SVIP |
 Gene summary |
| Gene information | Gene symbol | SVIP | Gene ID | 258010 |
| Gene name | small VCP interacting protein | |
| Synonyms | - | |
| Cytomap | 11p14.3 | |
| Type of gene | protein-coding | |
| Description | small VCP/p97-interacting protein | |
| Modification date | 20200313 | |
| UniProtAcc | Q8NHG7, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for SVIP |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_247125(22816307, -), ADediting_247126(22816416, -), ADediting_247127(22816487, -), ADediting_247128(22816488, -), ADediting_247129(22816504, -), ADediting_247130(22819515, -), ADediting_247131(22819624, -), ADediting_247132(22819660, -), ADediting_247133(22819689, -), ADediting_247134(22819690, -), ADediting_247135(22819696, -), ADediting_247136(22819720, -), ADediting_1526609(22819623, -), |
Top |
RNA editing positional annotations for SVIP using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_247125 | chr11_22816307_- | intergenic |
| ADediting_247126 | chr11_22816416_- | intergenic |
| ADediting_247127 | chr11_22816487_- | intergenic |
| ADediting_247128 | chr11_22816488_- | intergenic |
| ADediting_247129 | chr11_22816504_- | intergenic |
| ADediting_247130 | chr11_22819515_- | UTR3 |
| ADediting_247131 | chr11_22819624_- | UTR3 |
| ADediting_247132 | chr11_22819660_- | UTR3 |
| ADediting_247133 | chr11_22819689_- | UTR3 |
| ADediting_247134 | chr11_22819690_- | UTR3 |
| ADediting_247135 | chr11_22819696_- | UTR3 |
| ADediting_247136 | chr11_22819720_- | UTR3 |
| ADediting_1526609 | chr11_22819623_- | UTR3 |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_247125 | chr11_22816307_- | SINE | Alu | Name=AluSz |
| ADediting_247126 | chr11_22816416_- | SINE | Alu | Name=AluSz |
| ADediting_247127 | chr11_22816487_- | SINE | Alu | Name=AluSz |
| ADediting_247128 | chr11_22816488_- | SINE | Alu | Name=AluSz |
| ADediting_247129 | chr11_22816504_- | SINE | Alu | Name=AluSz |
| ADediting_247130 | chr11_22819515_- | SINE | Alu | Name=AluSp |
| ADediting_247131 | chr11_22819624_- | SINE | Alu | Name=AluSp |
| ADediting_247132 | chr11_22819660_- | SINE | Alu | Name=AluSp |
| ADediting_247133 | chr11_22819689_- | SINE | Alu | Name=AluSp |
| ADediting_247134 | chr11_22819690_- | SINE | Alu | Name=AluSp |
| ADediting_247135 | chr11_22819696_- | SINE | Alu | Name=AluSp |
| ADediting_247136 | chr11_22819720_- | SINE | Alu | Name=AluSp |
| ADediting_1526609 | chr11_22819623_- | SINE | Alu | Name=AluSp |
Top |
RNA A-to-I editing events in the alternative splicing sites for SVIP |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for SVIP |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
 | |
| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
 |
 |
 |
 |
| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |