|
||||||
|
 | |
| |
| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
| |
| |
| The effects of the RNA editing to the stability of the RNA structures |
| |
| |
| |
|
Gene summary for LINC00957 |
 Gene summary |
| Gene information | Gene symbol | LINC00957 | Gene ID | 255031 |
| Gene name | long intergenic non-protein coding RNA 957 | |
| Synonyms | - | |
| Cytomap | 7p13 | |
| Type of gene | ncRNA | |
| Description | - | |
| Modification date | 20200313 | |
| UniProtAcc | ||
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for LINC00957 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_1332825(44042047, +), ADediting_1332826(44042053, +), ADediting_1332827(44042054, +), ADediting_1332828(44042059, +), ADediting_1332829(44042075, +), ADediting_1332830(44042076, +), ADediting_1332831(44042084, +), ADediting_1332832(44042097, +), ADediting_1332833(44042098, +), ADediting_1332834(44042121, +), ADediting_1332835(44042130, +), ADediting_1332836(44042131, +), ADediting_1332837(44042142, +), ADediting_1332838(44042145, +), ADediting_1332839(44042151, +), ADediting_1332840(44042154, +), ADediting_1332841(44042156, +), ADediting_1332842(44042168, +), ADediting_1332843(44042186, +), ADediting_1332844(44042192, +), ADediting_1332845(44042196, +), ADediting_1332846(44042200, +), ADediting_1332847(44042209, +), ADediting_1332848(44042213, +), ADediting_1332849(44042222, +), ADediting_1332850(44042227, +), ADediting_1332851(44042228, +), ADediting_1332852(44042302, +), ADediting_1587511(44042092, +), ADediting_1587512(44042239, +), |
Top |
RNA editing positional annotations for LINC00957 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1332825 | chr7_44042047_+ | ncRNA_exonic |
| ADediting_1332826 | chr7_44042053_+ | ncRNA_exonic |
| ADediting_1332827 | chr7_44042054_+ | ncRNA_exonic |
| ADediting_1332828 | chr7_44042059_+ | ncRNA_exonic |
| ADediting_1332829 | chr7_44042075_+ | ncRNA_exonic |
| ADediting_1332830 | chr7_44042076_+ | ncRNA_exonic |
| ADediting_1332831 | chr7_44042084_+ | ncRNA_exonic |
| ADediting_1332832 | chr7_44042097_+ | ncRNA_exonic |
| ADediting_1332833 | chr7_44042098_+ | ncRNA_exonic |
| ADediting_1332834 | chr7_44042121_+ | ncRNA_exonic |
| ADediting_1332835 | chr7_44042130_+ | ncRNA_exonic |
| ADediting_1332836 | chr7_44042131_+ | ncRNA_exonic |
| ADediting_1332837 | chr7_44042142_+ | ncRNA_exonic |
| ADediting_1332838 | chr7_44042145_+ | ncRNA_exonic |
| ADediting_1332839 | chr7_44042151_+ | ncRNA_exonic |
| ADediting_1332840 | chr7_44042154_+ | ncRNA_exonic |
| ADediting_1332841 | chr7_44042156_+ | ncRNA_exonic |
| ADediting_1332842 | chr7_44042168_+ | ncRNA_exonic |
| ADediting_1332843 | chr7_44042186_+ | ncRNA_exonic |
| ADediting_1332844 | chr7_44042192_+ | ncRNA_exonic |
| ADediting_1332845 | chr7_44042196_+ | ncRNA_exonic |
| ADediting_1332846 | chr7_44042200_+ | ncRNA_exonic |
| ADediting_1332847 | chr7_44042209_+ | ncRNA_exonic |
| ADediting_1332848 | chr7_44042213_+ | ncRNA_exonic |
| ADediting_1332849 | chr7_44042222_+ | ncRNA_exonic |
| ADediting_1332850 | chr7_44042227_+ | ncRNA_exonic |
| ADediting_1332851 | chr7_44042228_+ | ncRNA_exonic |
| ADediting_1332852 | chr7_44042302_+ | ncRNA_exonic |
| ADediting_1587511 | chr7_44042092_+ | ncRNA_exonic |
| ADediting_1587512 | chr7_44042239_+ | ncRNA_exonic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1332825 | chr7_44042047_+ | SINE | Alu | Name=AluSc |
| ADediting_1332826 | chr7_44042053_+ | SINE | Alu | Name=AluSc |
| ADediting_1332827 | chr7_44042054_+ | SINE | Alu | Name=AluSc |
| ADediting_1332828 | chr7_44042059_+ | SINE | Alu | Name=AluSc |
| ADediting_1332829 | chr7_44042075_+ | SINE | Alu | Name=AluSc |
| ADediting_1332830 | chr7_44042076_+ | SINE | Alu | Name=AluSc |
| ADediting_1332831 | chr7_44042084_+ | SINE | Alu | Name=AluSc |
| ADediting_1332832 | chr7_44042097_+ | SINE | Alu | Name=AluSc |
| ADediting_1332833 | chr7_44042098_+ | SINE | Alu | Name=AluSc |
| ADediting_1332834 | chr7_44042121_+ | SINE | Alu | Name=AluSc |
| ADediting_1332835 | chr7_44042130_+ | SINE | Alu | Name=AluSc |
| ADediting_1332836 | chr7_44042131_+ | SINE | Alu | Name=AluSc |
| ADediting_1332837 | chr7_44042142_+ | SINE | Alu | Name=AluSc |
| ADediting_1332838 | chr7_44042145_+ | SINE | Alu | Name=AluSc |
| ADediting_1332839 | chr7_44042151_+ | SINE | Alu | Name=AluSc |
| ADediting_1332840 | chr7_44042154_+ | SINE | Alu | Name=AluSc |
| ADediting_1332841 | chr7_44042156_+ | SINE | Alu | Name=AluSc |
| ADediting_1332842 | chr7_44042168_+ | SINE | Alu | Name=AluSc |
| ADediting_1332843 | chr7_44042186_+ | SINE | Alu | Name=AluSc |
| ADediting_1332844 | chr7_44042192_+ | SINE | Alu | Name=AluSc |
| ADediting_1332845 | chr7_44042196_+ | SINE | Alu | Name=AluSc |
| ADediting_1332846 | chr7_44042200_+ | SINE | Alu | Name=AluSc |
| ADediting_1332847 | chr7_44042209_+ | SINE | Alu | Name=AluSc |
| ADediting_1332848 | chr7_44042213_+ | SINE | Alu | Name=AluSc |
| ADediting_1332849 | chr7_44042222_+ | SINE | Alu | Name=AluSc |
| ADediting_1332850 | chr7_44042227_+ | SINE | Alu | Name=AluSc |
| ADediting_1332851 | chr7_44042228_+ | SINE | Alu | Name=AluSc |
| ADediting_1332852 | chr7_44042302_+ | SINE | Alu | Name=AluSc |
| ADediting_1587511 | chr7_44042092_+ | SINE | Alu | Name=AluSc |
| ADediting_1587512 | chr7_44042239_+ | SINE | Alu | Name=AluSc |
Top |
RNA A-to-I editing events in the alternative splicing sites for LINC00957 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for LINC00957 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
 | |
| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
 |
 |
 |
 |
 |
 |
 |
| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
 |
 |
 |
 |
 |
 |
 |
| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |