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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for SHPK |
 Gene summary |
| Gene information | Gene symbol | SHPK | Gene ID | 23729 |
| Gene name | sedoheptulokinase | |
| Synonyms | CARKL|SHK | |
| Cytomap | 17p13.2 | |
| Type of gene | protein-coding | |
| Description | sedoheptulokinasecarbohydrate kinase-like protein | |
| Modification date | 20200313 | |
| UniProtAcc | Q9UHJ6, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
| SHPK | GO:0005975 | carbohydrate metabolic process | 19413330 |
| SHPK | GO:0016310 | phosphorylation | 19413330 |
| SHPK | GO:0071222 | cellular response to lipopolysaccharide | 22682222 |
Top |
RNA A-to-I events for SHPK |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_614291(3608922, -), ADediting_614292(3608944, -), ADediting_614293(3608957, -), ADediting_614294(3608964, -), ADediting_614295(3608977, -), ADediting_614296(3608988, -), ADediting_614297(3608994, -), ADediting_614298(3608997, -), ADediting_614299(3608998, -), ADediting_614300(3608999, -), ADediting_614301(3609003, -), ADediting_614302(3609016, -), ADediting_614303(3609020, -), ADediting_614304(3609024, -), ADediting_614305(3609029, -), ADediting_614306(3609030, -), ADediting_614307(3609089, -), ADediting_614308(3609090, -), ADediting_614309(3609093, -), ADediting_614310(3609099, -), ADediting_614311(3609104, -), ADediting_614312(3609105, -), ADediting_614313(3609113, -), ADediting_614314(3609118, -), ADediting_614315(3609123, -), ADediting_614316(3609127, -), ADediting_614317(3609135, -), ADediting_614318(3609141, -), ADediting_614319(3609150, -), ADediting_614320(3609177, -), ADediting_614321(3609910, -), ADediting_614322(3611312, -), ADediting_614323(3611469, -), ADediting_614324(3611900, -), ADediting_614325(3611932, -), ADediting_614326(3611941, -), ADediting_614327(3611942, -), ADediting_614328(3611968, -), ADediting_614329(3612000, -), ADediting_614330(3612003, -), ADediting_614331(3612017, -), ADediting_614332(3612060, -), ADediting_614333(3612182, -), ADediting_614334(3612208, -), ADediting_614335(3612246, -), ADediting_614336(3612304, -), ADediting_614337(3612317, -), ADediting_614338(3612326, -), ADediting_614339(3612343, -), ADediting_614340(3612374, -), ADediting_614341(3612382, -), ADediting_614342(3612849, -), ADediting_614343(3612890, -), ADediting_614344(3615922, -), ADediting_614345(3615992, -), ADediting_614346(3616005, -), ADediting_614347(3616018, -), ADediting_614348(3616057, -), ADediting_614349(3616058, -), ADediting_614350(3616072, -), ADediting_614351(3616124, -), ADediting_614352(3616125, -), ADediting_614353(3616823, -), ADediting_614354(3616840, -), ADediting_614355(3616875, -), ADediting_614356(3616955, -), ADediting_614357(3616974, -), ADediting_614358(3616983, -), ADediting_614359(3617036, -), ADediting_614360(3618174, -), ADediting_614361(3618189, -), ADediting_614362(3618192, -), ADediting_614363(3618212, -), ADediting_614364(3618217, -), ADediting_614365(3618234, -), ADediting_614366(3618238, -), ADediting_614367(3618243, -), ADediting_614368(3618244, -), ADediting_614369(3618250, -), ADediting_614370(3618266, -), ADediting_614371(3618295, -), ADediting_614372(3618310, -), ADediting_614373(3618320, -), ADediting_614374(3618325, -), ADediting_614375(3618326, -), ADediting_614376(3618334, -), ADediting_614377(3618384, -), ADediting_614378(3618525, -), ADediting_614379(3618537, -), ADediting_614380(3618636, -), ADediting_614381(3618663, -), ADediting_614382(3618668, -), ADediting_614383(3618672, -), ADediting_614384(3618680, -), ADediting_614385(3618697, -), ADediting_614386(3618728, -), ADediting_614387(3618733, -), ADediting_614388(3618734, -), ADediting_614389(3618736, -), ADediting_614390(3619478, -), ADediting_614391(3619490, -), ADediting_614392(3619491, -), ADediting_614393(3619530, -), ADediting_614394(3619550, -), ADediting_614395(3619553, -), ADediting_614396(3619567, -), ADediting_614397(3619570, -), ADediting_614398(3619611, -), ADediting_614399(3619621, -), ADediting_614400(3619624, -), ADediting_614401(3619676, -), ADediting_614402(3619719, -), ADediting_614403(3620291, -), ADediting_614404(3620389, -), ADediting_614405(3620393, -), ADediting_614406(3620415, -), ADediting_614407(3620624, -), ADediting_614408(3620627, -), ADediting_614409(3620629, -), ADediting_614410(3620634, -), ADediting_614411(3620638, -), ADediting_614412(3620685, -), ADediting_614413(3620698, -), ADediting_614414(3620725, -), ADediting_614415(3620734, -), ADediting_614416(3620764, -), ADediting_614417(3620780, -), ADediting_614418(3624730, -), ADediting_614419(3624750, -), ADediting_614420(3624751, -), ADediting_614421(3624768, -), ADediting_614422(3625941, -), ADediting_614423(3625970, -), ADediting_614424(3626646, -), ADediting_614425(3626819, -), ADediting_614426(3626832, -), ADediting_614427(3626856, -), ADediting_614428(3626859, -), ADediting_614429(3628369, -), ADediting_614430(3628430, -), ADediting_614431(3628848, -), ADediting_614432(3628868, -), ADediting_614433(3629486, -), ADediting_614434(3629536, -), ADediting_614435(3629628, -), ADediting_614436(3629645, -), ADediting_614437(3629676, -), ADediting_614438(3630706, -), ADediting_614439(3630715, -), ADediting_614440(3630716, -), ADediting_614441(3630740, -), ADediting_614442(3630742, -), ADediting_614443(3630752, -), ADediting_614444(3630788, -), ADediting_614445(3631639, -), ADediting_614446(3632095, -), ADediting_614447(3632097, -), ADediting_614448(3633064, -), ADediting_614449(3633117, -), ADediting_614450(3633163, -), ADediting_614451(3634313, -), ADediting_614452(3634378, -), ADediting_614453(3634472, -), ADediting_614454(3634921, -), ADediting_614455(3634927, -), ADediting_614456(3634989, -), ADediting_614457(3635072, -), ADediting_614458(3635288, -), ADediting_614459(3635508, -), ADediting_1546171(3608927, -), ADediting_1546172(3609087, -), ADediting_1546173(3609136, -), ADediting_1546174(3620693, -), ADediting_1627120(3618179, -), ADediting_1627121(3620672, -), |
Top |
RNA editing positional annotations for SHPK using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_614291 | chr17_3608922_- | UTR3 |
| ADediting_614292 | chr17_3608944_- | UTR3 |
| ADediting_614293 | chr17_3608957_- | UTR3 |
| ADediting_614294 | chr17_3608964_- | UTR3 |
| ADediting_614295 | chr17_3608977_- | UTR3 |
| ADediting_614296 | chr17_3608988_- | UTR3 |
| ADediting_614297 | chr17_3608994_- | UTR3 |
| ADediting_614298 | chr17_3608997_- | UTR3 |
| ADediting_614299 | chr17_3608998_- | UTR3 |
| ADediting_614300 | chr17_3608999_- | UTR3 |
| ADediting_614301 | chr17_3609003_- | UTR3 |
| ADediting_614302 | chr17_3609016_- | UTR3 |
| ADediting_614303 | chr17_3609020_- | UTR3 |
| ADediting_614304 | chr17_3609024_- | UTR3 |
| ADediting_614305 | chr17_3609029_- | UTR3 |
| ADediting_614306 | chr17_3609030_- | UTR3 |
| ADediting_614307 | chr17_3609089_- | UTR3 |
| ADediting_614308 | chr17_3609090_- | UTR3 |
| ADediting_614309 | chr17_3609093_- | UTR3 |
| ADediting_614310 | chr17_3609099_- | UTR3 |
| ADediting_614311 | chr17_3609104_- | UTR3 |
| ADediting_614312 | chr17_3609105_- | UTR3 |
| ADediting_614313 | chr17_3609113_- | UTR3 |
| ADediting_614314 | chr17_3609118_- | UTR3 |
| ADediting_614315 | chr17_3609123_- | UTR3 |
| ADediting_614316 | chr17_3609127_- | UTR3 |
| ADediting_614317 | chr17_3609135_- | UTR3 |
| ADediting_614318 | chr17_3609141_- | UTR3 |
| ADediting_614319 | chr17_3609150_- | UTR3 |
| ADediting_614320 | chr17_3609177_- | UTR3 |
| ADediting_614321 | chr17_3609910_- | UTR3 |
| ADediting_614322 | chr17_3611312_- | intronic |
| ADediting_614323 | chr17_3611469_- | intronic |
| ADediting_614324 | chr17_3611900_- | intronic |
| ADediting_614325 | chr17_3611932_- | intronic |
| ADediting_614326 | chr17_3611941_- | intronic |
| ADediting_614327 | chr17_3611942_- | intronic |
| ADediting_614328 | chr17_3611968_- | intronic |
| ADediting_614329 | chr17_3612000_- | intronic |
| ADediting_614330 | chr17_3612003_- | intronic |
| ADediting_614331 | chr17_3612017_- | intronic |
| ADediting_614332 | chr17_3612060_- | intronic |
| ADediting_614333 | chr17_3612182_- | intronic |
| ADediting_614334 | chr17_3612208_- | intronic |
| ADediting_614335 | chr17_3612246_- | intronic |
| ADediting_614336 | chr17_3612304_- | intronic |
| ADediting_614337 | chr17_3612317_- | intronic |
| ADediting_614338 | chr17_3612326_- | intronic |
| ADediting_614339 | chr17_3612343_- | intronic |
| ADediting_614340 | chr17_3612374_- | intronic |
| ADediting_614341 | chr17_3612382_- | intronic |
| ADediting_614342 | chr17_3612849_- | intronic |
| ADediting_614343 | chr17_3612890_- | intronic |
| ADediting_614344 | chr17_3615922_- | intronic |
| ADediting_614345 | chr17_3615992_- | intronic |
| ADediting_614346 | chr17_3616005_- | intronic |
| ADediting_614347 | chr17_3616018_- | intronic |
| ADediting_614348 | chr17_3616057_- | intronic |
| ADediting_614349 | chr17_3616058_- | intronic |
| ADediting_614350 | chr17_3616072_- | intronic |
| ADediting_614351 | chr17_3616124_- | intronic |
| ADediting_614352 | chr17_3616125_- | intronic |
| ADediting_614353 | chr17_3616823_- | intronic |
| ADediting_614354 | chr17_3616840_- | intronic |
| ADediting_614355 | chr17_3616875_- | intronic |
| ADediting_614356 | chr17_3616955_- | intronic |
| ADediting_614357 | chr17_3616974_- | intronic |
| ADediting_614358 | chr17_3616983_- | intronic |
| ADediting_614359 | chr17_3617036_- | intronic |
| ADediting_614360 | chr17_3618174_- | intronic |
| ADediting_614361 | chr17_3618189_- | intronic |
| ADediting_614362 | chr17_3618192_- | intronic |
| ADediting_614363 | chr17_3618212_- | intronic |
| ADediting_614364 | chr17_3618217_- | intronic |
| ADediting_614365 | chr17_3618234_- | intronic |
| ADediting_614366 | chr17_3618238_- | intronic |
| ADediting_614367 | chr17_3618243_- | intronic |
| ADediting_614368 | chr17_3618244_- | intronic |
| ADediting_614369 | chr17_3618250_- | intronic |
| ADediting_614370 | chr17_3618266_- | intronic |
| ADediting_614371 | chr17_3618295_- | intronic |
| ADediting_614372 | chr17_3618310_- | intronic |
| ADediting_614373 | chr17_3618320_- | intronic |
| ADediting_614374 | chr17_3618325_- | intronic |
| ADediting_614375 | chr17_3618326_- | intronic |
| ADediting_614376 | chr17_3618334_- | intronic |
| ADediting_614377 | chr17_3618384_- | intronic |
| ADediting_614378 | chr17_3618525_- | intronic |
| ADediting_614379 | chr17_3618537_- | intronic |
| ADediting_614380 | chr17_3618636_- | intronic |
| ADediting_614381 | chr17_3618663_- | intronic |
| ADediting_614382 | chr17_3618668_- | intronic |
| ADediting_614383 | chr17_3618672_- | intronic |
| ADediting_614384 | chr17_3618680_- | intronic |
| ADediting_614385 | chr17_3618697_- | intronic |
| ADediting_614386 | chr17_3618728_- | intronic |
| ADediting_614387 | chr17_3618733_- | intronic |
| ADediting_614388 | chr17_3618734_- | intronic |
| ADediting_614389 | chr17_3618736_- | intronic |
| ADediting_614390 | chr17_3619478_- | ncRNA_intronic |
| ADediting_614391 | chr17_3619490_- | ncRNA_intronic |
| ADediting_614392 | chr17_3619491_- | ncRNA_intronic |
| ADediting_614393 | chr17_3619530_- | ncRNA_intronic |
| ADediting_614394 | chr17_3619550_- | ncRNA_intronic |
| ADediting_614395 | chr17_3619553_- | ncRNA_intronic |
| ADediting_614396 | chr17_3619567_- | ncRNA_intronic |
| ADediting_614397 | chr17_3619570_- | ncRNA_intronic |
| ADediting_614398 | chr17_3619611_- | ncRNA_intronic |
| ADediting_614399 | chr17_3619621_- | ncRNA_intronic |
| ADediting_614400 | chr17_3619624_- | ncRNA_intronic |
| ADediting_614401 | chr17_3619676_- | ncRNA_intronic |
| ADediting_614402 | chr17_3619719_- | ncRNA_intronic |
| ADediting_614403 | chr17_3620291_- | intronic |
| ADediting_614404 | chr17_3620389_- | intronic |
| ADediting_614405 | chr17_3620393_- | intronic |
| ADediting_614406 | chr17_3620415_- | intronic |
| ADediting_614407 | chr17_3620624_- | intronic |
| ADediting_614408 | chr17_3620627_- | intronic |
| ADediting_614409 | chr17_3620629_- | intronic |
| ADediting_614410 | chr17_3620634_- | intronic |
| ADediting_614411 | chr17_3620638_- | intronic |
| ADediting_614412 | chr17_3620685_- | intronic |
| ADediting_614413 | chr17_3620698_- | intronic |
| ADediting_614414 | chr17_3620725_- | intronic |
| ADediting_614415 | chr17_3620734_- | intronic |
| ADediting_614416 | chr17_3620764_- | intronic |
| ADediting_614417 | chr17_3620780_- | intronic |
| ADediting_614418 | chr17_3624730_- | intronic |
| ADediting_614419 | chr17_3624750_- | intronic |
| ADediting_614420 | chr17_3624751_- | intronic |
| ADediting_614421 | chr17_3624768_- | intronic |
| ADediting_614422 | chr17_3625941_- | intronic |
| ADediting_614423 | chr17_3625970_- | intronic |
| ADediting_614424 | chr17_3626646_- | intronic |
| ADediting_614425 | chr17_3626819_- | intronic |
| ADediting_614426 | chr17_3626832_- | intronic |
| ADediting_614427 | chr17_3626856_- | intronic |
| ADediting_614428 | chr17_3626859_- | intronic |
| ADediting_614429 | chr17_3628369_- | intronic |
| ADediting_614430 | chr17_3628430_- | intronic |
| ADediting_614431 | chr17_3628848_- | intronic |
| ADediting_614432 | chr17_3628868_- | intronic |
| ADediting_614433 | chr17_3629486_- | intronic |
| ADediting_614434 | chr17_3629536_- | intronic |
| ADediting_614435 | chr17_3629628_- | intronic |
| ADediting_614436 | chr17_3629645_- | intronic |
| ADediting_614437 | chr17_3629676_- | intronic |
| ADediting_614438 | chr17_3630706_- | intronic |
| ADediting_614439 | chr17_3630715_- | intronic |
| ADediting_614440 | chr17_3630716_- | intronic |
| ADediting_614441 | chr17_3630740_- | intronic |
| ADediting_614442 | chr17_3630742_- | intronic |
| ADediting_614443 | chr17_3630752_- | intronic |
| ADediting_614444 | chr17_3630788_- | intronic |
| ADediting_614445 | chr17_3631639_- | intronic |
| ADediting_614446 | chr17_3632095_- | intronic |
| ADediting_614447 | chr17_3632097_- | intronic |
| ADediting_614448 | chr17_3633064_- | intronic |
| ADediting_614449 | chr17_3633117_- | intronic |
| ADediting_614450 | chr17_3633163_- | intronic |
| ADediting_614451 | chr17_3634313_- | intronic |
| ADediting_614452 | chr17_3634378_- | intronic |
| ADediting_614453 | chr17_3634472_- | intronic |
| ADediting_614454 | chr17_3634921_- | intronic |
| ADediting_614455 | chr17_3634927_- | intronic |
| ADediting_614456 | chr17_3634989_- | intronic |
| ADediting_614457 | chr17_3635072_- | intronic |
| ADediting_614458 | chr17_3635288_- | intronic |
| ADediting_614459 | chr17_3635508_- | intronic |
| ADediting_1546171 | chr17_3608927_- | UTR3 |
| ADediting_1546172 | chr17_3609087_- | UTR3 |
| ADediting_1546173 | chr17_3609136_- | UTR3 |
| ADediting_1546174 | chr17_3620693_- | intronic |
| ADediting_1627120 | chr17_3618179_- | intronic |
| ADediting_1627121 | chr17_3620672_- | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_614291 | chr17_3608922_- | SINE | Alu | Name=AluSx |
| ADediting_614292 | chr17_3608944_- | SINE | Alu | Name=AluSx |
| ADediting_614293 | chr17_3608957_- | SINE | Alu | Name=AluSx |
| ADediting_614294 | chr17_3608964_- | SINE | Alu | Name=AluSx |
| ADediting_614295 | chr17_3608977_- | SINE | Alu | Name=AluSx |
| ADediting_614296 | chr17_3608988_- | SINE | Alu | Name=AluSx |
| ADediting_614297 | chr17_3608994_- | SINE | Alu | Name=AluSx |
| ADediting_614298 | chr17_3608997_- | SINE | Alu | Name=AluSx |
| ADediting_614299 | chr17_3608998_- | SINE | Alu | Name=AluSx |
| ADediting_614300 | chr17_3608999_- | SINE | Alu | Name=AluSx |
| ADediting_614301 | chr17_3609003_- | SINE | Alu | Name=AluSx |
| ADediting_614302 | chr17_3609016_- | SINE | Alu | Name=AluSx |
| ADediting_614303 | chr17_3609020_- | SINE | Alu | Name=AluSx |
| ADediting_614304 | chr17_3609024_- | SINE | Alu | Name=AluSx |
| ADediting_614305 | chr17_3609029_- | SINE | Alu | Name=AluSx |
| ADediting_614306 | chr17_3609030_- | SINE | Alu | Name=AluSx |
| ADediting_614307 | chr17_3609089_- | SINE | Alu | Name=AluSx |
| ADediting_614308 | chr17_3609090_- | SINE | Alu | Name=AluSx |
| ADediting_614309 | chr17_3609093_- | SINE | Alu | Name=AluSx |
| ADediting_614310 | chr17_3609099_- | SINE | Alu | Name=AluSx |
| ADediting_614311 | chr17_3609104_- | SINE | Alu | Name=AluSx |
| ADediting_614312 | chr17_3609105_- | SINE | Alu | Name=AluSx |
| ADediting_614313 | chr17_3609113_- | SINE | Alu | Name=AluSx |
| ADediting_614314 | chr17_3609118_- | SINE | Alu | Name=AluSx |
| ADediting_614315 | chr17_3609123_- | SINE | Alu | Name=AluSx |
| ADediting_614316 | chr17_3609127_- | SINE | Alu | Name=AluSx |
| ADediting_614317 | chr17_3609135_- | SINE | Alu | Name=AluSx |
| ADediting_614318 | chr17_3609141_- | SINE | Alu | Name=AluSx |
| ADediting_614319 | chr17_3609150_- | SINE | Alu | Name=AluSx |
| ADediting_614320 | chr17_3609177_- | SINE | Alu | Name=AluSx |
| ADediting_614322 | chr17_3611312_- | SINE | Alu | Name=AluSq |
| ADediting_614323 | chr17_3611469_- | SINE | Alu | Name=AluSq |
| ADediting_614324 | chr17_3611900_- | SINE | Alu | Name=AluSz |
| ADediting_614325 | chr17_3611932_- | SINE | Alu | Name=AluSz |
| ADediting_614326 | chr17_3611941_- | SINE | Alu | Name=AluSz |
| ADediting_614327 | chr17_3611942_- | SINE | Alu | Name=AluSz |
| ADediting_614328 | chr17_3611968_- | SINE | Alu | Name=AluSz |
| ADediting_614329 | chr17_3612000_- | SINE | Alu | Name=AluSz |
| ADediting_614330 | chr17_3612003_- | SINE | Alu | Name=AluSz |
| ADediting_614331 | chr17_3612017_- | SINE | Alu | Name=AluSz |
| ADediting_614332 | chr17_3612060_- | SINE | Alu | Name=AluSz |
| ADediting_614333 | chr17_3612182_- | SINE | Alu | Name=AluSz |
| ADediting_614334 | chr17_3612208_- | SINE | Alu | Name=AluSz |
| ADediting_614335 | chr17_3612246_- | SINE | Alu | Name=AluSz |
| ADediting_614336 | chr17_3612304_- | SINE | Alu | Name=AluSz |
| ADediting_614337 | chr17_3612317_- | SINE | Alu | Name=AluSz |
| ADediting_614338 | chr17_3612326_- | SINE | Alu | Name=AluSz |
| ADediting_614339 | chr17_3612343_- | SINE | Alu | Name=AluSz |
| ADediting_614340 | chr17_3612374_- | SINE | Alu | Name=AluSz |
| ADediting_614341 | chr17_3612382_- | SINE | Alu | Name=AluSz |
| ADediting_614342 | chr17_3612849_- | SINE | Alu | Name=AluSx4 |
| ADediting_614343 | chr17_3612890_- | SINE | Alu | Name=AluSx4 |
| ADediting_614344 | chr17_3615922_- | SINE | Alu | Name=AluSg7 |
| ADediting_614345 | chr17_3615992_- | SINE | Alu | Name=AluSg7 |
| ADediting_614346 | chr17_3616005_- | SINE | Alu | Name=AluSg7 |
| ADediting_614347 | chr17_3616018_- | SINE | Alu | Name=AluSg7 |
| ADediting_614348 | chr17_3616057_- | SINE | Alu | Name=AluSg7 |
| ADediting_614349 | chr17_3616058_- | SINE | Alu | Name=AluSg7 |
| ADediting_614350 | chr17_3616072_- | SINE | Alu | Name=AluSg7 |
| ADediting_614351 | chr17_3616124_- | SINE | Alu | Name=AluSg7 |
| ADediting_614352 | chr17_3616125_- | SINE | Alu | Name=AluSg7 |
| ADediting_614353 | chr17_3616823_- | SINE | Alu | Name=AluSx3 |
| ADediting_614354 | chr17_3616840_- | SINE | Alu | Name=AluSx3 |
| ADediting_614355 | chr17_3616875_- | SINE | Alu | Name=AluSx3 |
| ADediting_614356 | chr17_3616955_- | SINE | Alu | Name=AluSx3 |
| ADediting_614357 | chr17_3616974_- | SINE | Alu | Name=AluSx3 |
| ADediting_614358 | chr17_3616983_- | SINE | Alu | Name=AluSx3 |
| ADediting_614359 | chr17_3617036_- | SINE | Alu | Name=AluSz |
| ADediting_614360 | chr17_3618174_- | SINE | Alu | Name=AluSg7 |
| ADediting_614361 | chr17_3618189_- | SINE | Alu | Name=AluSg7 |
| ADediting_614362 | chr17_3618192_- | SINE | Alu | Name=AluSg7 |
| ADediting_614363 | chr17_3618212_- | SINE | Alu | Name=AluSg7 |
| ADediting_614364 | chr17_3618217_- | SINE | Alu | Name=AluSg7 |
| ADediting_614365 | chr17_3618234_- | SINE | Alu | Name=AluSg7 |
| ADediting_614366 | chr17_3618238_- | SINE | Alu | Name=AluSg7 |
| ADediting_614367 | chr17_3618243_- | SINE | Alu | Name=AluSg7 |
| ADediting_614368 | chr17_3618244_- | SINE | Alu | Name=AluSg7 |
| ADediting_614369 | chr17_3618250_- | SINE | Alu | Name=AluSg7 |
| ADediting_614370 | chr17_3618266_- | SINE | Alu | Name=AluSg7 |
| ADediting_614371 | chr17_3618295_- | SINE | Alu | Name=AluSg7 |
| ADediting_614372 | chr17_3618310_- | SINE | Alu | Name=AluSg7 |
| ADediting_614373 | chr17_3618320_- | SINE | Alu | Name=AluSg7 |
| ADediting_614374 | chr17_3618325_- | SINE | Alu | Name=AluSg7 |
| ADediting_614375 | chr17_3618326_- | SINE | Alu | Name=AluSg7 |
| ADediting_614376 | chr17_3618334_- | SINE | Alu | Name=AluSg7 |
| ADediting_614377 | chr17_3618384_- | SINE | Alu | Name=AluSg7 |
| ADediting_614378 | chr17_3618525_- | SINE | Alu | Name=AluSc |
| ADediting_614379 | chr17_3618537_- | SINE | Alu | Name=AluSc |
| ADediting_614380 | chr17_3618636_- | SINE | Alu | Name=AluSc |
| ADediting_614381 | chr17_3618663_- | SINE | Alu | Name=AluSc |
| ADediting_614382 | chr17_3618668_- | SINE | Alu | Name=AluSc |
| ADediting_614383 | chr17_3618672_- | SINE | Alu | Name=AluSc |
| ADediting_614384 | chr17_3618680_- | SINE | Alu | Name=AluSc |
| ADediting_614385 | chr17_3618697_- | SINE | Alu | Name=AluSc |
| ADediting_614386 | chr17_3618728_- | SINE | Alu | Name=AluSc |
| ADediting_614387 | chr17_3618733_- | SINE | Alu | Name=AluSc |
| ADediting_614388 | chr17_3618734_- | SINE | Alu | Name=AluSc |
| ADediting_614389 | chr17_3618736_- | SINE | Alu | Name=AluSc |
| ADediting_614390 | chr17_3619478_- | SINE | Alu | Name=AluSc |
| ADediting_614391 | chr17_3619490_- | SINE | Alu | Name=AluSc |
| ADediting_614392 | chr17_3619491_- | SINE | Alu | Name=AluSc |
| ADediting_614393 | chr17_3619530_- | SINE | Alu | Name=AluSc |
| ADediting_614394 | chr17_3619550_- | SINE | Alu | Name=AluSc |
| ADediting_614395 | chr17_3619553_- | SINE | Alu | Name=AluSc |
| ADediting_614396 | chr17_3619567_- | SINE | Alu | Name=AluSc |
| ADediting_614397 | chr17_3619570_- | SINE | Alu | Name=AluSc |
| ADediting_614398 | chr17_3619611_- | SINE | Alu | Name=AluSc |
| ADediting_614399 | chr17_3619621_- | SINE | Alu | Name=AluSc |
| ADediting_614400 | chr17_3619624_- | SINE | Alu | Name=AluSc |
| ADediting_614401 | chr17_3619676_- | SINE | Alu | Name=AluSc |
| ADediting_614402 | chr17_3619719_- | SINE | Alu | Name=AluSc |
| ADediting_614403 | chr17_3620291_- | SINE | Alu | Name=AluY |
| ADediting_614404 | chr17_3620389_- | SINE | Alu | Name=AluY |
| ADediting_614405 | chr17_3620393_- | SINE | Alu | Name=AluY |
| ADediting_614406 | chr17_3620415_- | SINE | Alu | Name=AluY |
| ADediting_614407 | chr17_3620624_- | SINE | Alu | Name=AluSg7 |
| ADediting_614408 | chr17_3620627_- | SINE | Alu | Name=AluSg7 |
| ADediting_614409 | chr17_3620629_- | SINE | Alu | Name=AluSg7 |
| ADediting_614410 | chr17_3620634_- | SINE | Alu | Name=AluSg7 |
| ADediting_614411 | chr17_3620638_- | SINE | Alu | Name=AluSg7 |
| ADediting_614412 | chr17_3620685_- | SINE | Alu | Name=AluSg7 |
| ADediting_614413 | chr17_3620698_- | SINE | Alu | Name=AluSg7 |
| ADediting_614414 | chr17_3620725_- | SINE | Alu | Name=AluSg7 |
| ADediting_614415 | chr17_3620734_- | SINE | Alu | Name=AluSg7 |
| ADediting_614416 | chr17_3620764_- | SINE | Alu | Name=AluSg7 |
| ADediting_614417 | chr17_3620780_- | SINE | Alu | Name=AluSg7 |
| ADediting_614418 | chr17_3624730_- | SINE | Alu | Name=AluSx3 |
| ADediting_614419 | chr17_3624750_- | SINE | Alu | Name=AluSx3 |
| ADediting_614420 | chr17_3624751_- | SINE | Alu | Name=AluSx3 |
| ADediting_614421 | chr17_3624768_- | SINE | Alu | Name=AluSx3 |
| ADediting_614422 | chr17_3625941_- | SINE | Alu | Name=AluSx1 |
| ADediting_614423 | chr17_3625970_- | SINE | Alu | Name=AluSx1 |
| ADediting_614424 | chr17_3626646_- | SINE | Alu | Name=AluSx1 |
| ADediting_614425 | chr17_3626819_- | SINE | Alu | Name=AluSq2 |
| ADediting_614426 | chr17_3626832_- | SINE | Alu | Name=AluSq2 |
| ADediting_614427 | chr17_3626856_- | SINE | Alu | Name=AluSq2 |
| ADediting_614428 | chr17_3626859_- | SINE | Alu | Name=AluSq2 |
| ADediting_614429 | chr17_3628369_- | SINE | Alu | Name=AluSg |
| ADediting_614430 | chr17_3628430_- | SINE | Alu | Name=AluSg |
| ADediting_614431 | chr17_3628848_- | SINE | Alu | Name=AluJr |
| ADediting_614432 | chr17_3628868_- | SINE | Alu | Name=AluJr |
| ADediting_614433 | chr17_3629486_- | SINE | Alu | Name=AluSq |
| ADediting_614434 | chr17_3629536_- | SINE | Alu | Name=AluSq |
| ADediting_614435 | chr17_3629628_- | SINE | Alu | Name=AluSq |
| ADediting_614436 | chr17_3629645_- | SINE | Alu | Name=AluSq |
| ADediting_614437 | chr17_3629676_- | SINE | Alu | Name=AluSq |
| ADediting_614438 | chr17_3630706_- | SINE | Alu | Name=AluSx |
| ADediting_614439 | chr17_3630715_- | SINE | Alu | Name=AluSx |
| ADediting_614440 | chr17_3630716_- | SINE | Alu | Name=AluSx |
| ADediting_614441 | chr17_3630740_- | SINE | Alu | Name=AluSx |
| ADediting_614442 | chr17_3630742_- | SINE | Alu | Name=AluSx |
| ADediting_614443 | chr17_3630752_- | SINE | Alu | Name=AluSx |
| ADediting_614444 | chr17_3630788_- | SINE | Alu | Name=AluSx |
| ADediting_614445 | chr17_3631639_- | SINE | Alu | Name=AluSx |
| ADediting_614446 | chr17_3632095_- | SINE | Alu | Name=AluSc |
| ADediting_614447 | chr17_3632097_- | SINE | Alu | Name=AluSc |
| ADediting_614448 | chr17_3633064_- | SINE | Alu | Name=AluSz |
| ADediting_614449 | chr17_3633117_- | SINE | Alu | Name=AluSz |
| ADediting_614450 | chr17_3633163_- | SINE | Alu | Name=AluSz |
| ADediting_614451 | chr17_3634313_- | SINE | Alu | Name=AluSz |
| ADediting_614452 | chr17_3634378_- | SINE | Alu | Name=AluSz |
| ADediting_614453 | chr17_3634472_- | SINE | Alu | Name=AluSz |
| ADediting_614454 | chr17_3634921_- | SINE | Alu | Name=AluSz |
| ADediting_614455 | chr17_3634927_- | SINE | Alu | Name=AluSz |
| ADediting_614456 | chr17_3634989_- | SINE | Alu | Name=AluSz |
| ADediting_614457 | chr17_3635072_- | SINE | Alu | Name=AluSz |
| ADediting_614458 | chr17_3635288_- | SINE | Alu | Name=AluY |
| ADediting_614459 | chr17_3635508_- | SINE | Alu | Name=AluY |
| ADediting_1546171 | chr17_3608927_- | SINE | Alu | Name=AluSx |
| ADediting_1546172 | chr17_3609087_- | SINE | Alu | Name=AluSx |
| ADediting_1546173 | chr17_3609136_- | SINE | Alu | Name=AluSx |
| ADediting_1546174 | chr17_3620693_- | SINE | Alu | Name=AluSg7 |
| ADediting_1627120 | chr17_3618179_- | SINE | Alu | Name=AluSg7 |
| ADediting_1627121 | chr17_3620672_- | SINE | Alu | Name=AluSg7 |
Top |
RNA A-to-I editing events in the alternative splicing sites for SHPK |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for SHPK |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
 | |
| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
 |
| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
 |
| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
Top |
Protein coding region RNA A-to-I editings for SHPK |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
Top |
The effects of the RNA editing to the miRNA binding sites for SHPK |
| RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1546172 | chr17_3609087_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-662 | chr17 | 3609083 | 3609089 | 7mer-m8 | 3609082 | 3609102 | 150 | -23.46 |
| ADediting_1546173 | chr17_3609136_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-3944-3p | chr17 | 3609135 | 3609141 | 7mer-m8 | 3609134 | 3609157 | 150 | -25.18 |
| ADediting_614294 | chr17_3608964_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-324-3p | chr17 | 3608964 | 3608970 | 7mer-m8 | 3608963 | 3608985 | 149 | -24.32 |
| ADediting_614294 | chr17_3608964_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-4690-3p | chr17 | 3608959 | 3608966 | 8mer-1a | 3608959 | 3608978 | 165 | -31.39 |
| ADediting_614294 | chr17_3608964_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-5685 | chr17 | 3608959 | 3608966 | 8mer-1a | 3608959 | 3608979 | 149 | -19.15 |
| ADediting_614295 | chr17_3608977_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-1281 | chr17 | 3608977 | 3608983 | 7mer-m8 | 3608976 | 3608992 | 141 | -16.88 |
| ADediting_614296 | chr17_3608988_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-3670 | chr17 | 3608985 | 3608991 | 7mer-m8 | 3608984 | 3609006 | 151 | -15.7 |
| ADediting_614298 | chr17_3608997_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-3124-3p | chr17 | 3608997 | 3609003 | 7mer-m8 | 3608996 | 3609017 | 149 | -16.39 |
| ADediting_614298 | chr17_3608997_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-3164 | chr17 | 3608993 | 3608999 | 7mer-m8 | 3608992 | 3609013 | 145 | -12.57 |
| ADediting_614298 | chr17_3608997_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-6820-3p | chr17 | 3608993 | 3608999 | 7mer-m8 | 3608992 | 3609010 | 155 | -23.88 |
| ADediting_614299 | chr17_3608998_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-141-5p | chr17 | 3608996 | 3609002 | 7mer-m8 | 3608995 | 3609017 | 150 | -14.56 |
| ADediting_614300 | chr17_3608999_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-1976 | chr17 | 3608998 | 3609005 | 8mer-1a | 3608998 | 3609018 | 153 | -25.04 |
| ADediting_614303 | chr17_3609020_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-1207-3p | chr17 | 3609020 | 3609026 | 7mer-m8 | 3609019 | 3609036 | 140 | -12.56 |
| ADediting_614303 | chr17_3609020_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-646 | chr17 | 3609018 | 3609024 | 7mer-m8 | 3609017 | 3609035 | 145 | -14.99 |
| ADediting_614305 | chr17_3609029_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-8052 | chr17 | 3609024 | 3609030 | 7mer-1a | 3609024 | 3609042 | 143 | -24.25 |
| ADediting_614306 | chr17_3609030_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-513a-5p | chr17 | 3609029 | 3609035 | 7mer-m8 | 3609028 | 3609045 | 156 | -21.01 |
| ADediting_614306 | chr17_3609030_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-638 | chr17 | 3609024 | 3609030 | 7mer-1a | 3609024 | 3609048 | 159 | -35.15 |
| ADediting_614307 | chr17_3609089_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-6131 | chr17 | 3609087 | 3609094 | 8mer-1a | 3609087 | 3609105 | 155 | -22.81 |
| ADediting_614309 | chr17_3609093_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-4435 | chr17 | 3609089 | 3609096 | 8mer-1a | 3609089 | 3609109 | 146 | -17.76 |
| ADediting_614309 | chr17_3609093_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-4755-3p | chr17 | 3609092 | 3609098 | 7mer-m8 | 3609091 | 3609112 | 145 | -16.93 |
| ADediting_614311 | chr17_3609104_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-12113 | chr17 | 3609104 | 3609110 | 7mer-m8 | 3609103 | 3609129 | 149 | -20.37 |
| ADediting_614311 | chr17_3609104_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-4539 | chr17 | 3609104 | 3609110 | 7mer-m8 | 3609103 | 3609122 | 151 | -20 |
| ADediting_614314 | chr17_3609118_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-4726-3p | chr17 | 3609117 | 3609123 | 7mer-m8 | 3609116 | 3609140 | 141 | -22.2 |
| ADediting_614315 | chr17_3609123_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-8053 | chr17 | 3609121 | 3609127 | 7mer-m8 | 3609120 | 3609139 | 145 | -19.43 |
| ADediting_614316 | chr17_3609127_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-640 | chr17 | 3609123 | 3609129 | 7mer-m8 | 3609122 | 3609142 | 148 | -16.42 |
| ADediting_614317 | chr17_3609135_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-1224-3p | chr17 | 3609130 | 3609136 | 7mer-m8 | 3609129 | 3609149 | 149 | -19.38 |
| ADediting_614317 | chr17_3609135_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-6765-3p | chr17 | 3609132 | 3609138 | 7mer-m8 | 3609131 | 3609151 | 148 | -24.88 |
| ADediting_614317 | chr17_3609135_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-7851-3p | chr17 | 3609133 | 3609139 | 7mer-m8 | 3609132 | 3609153 | 148 | -22.6 |
| ADediting_614317 | chr17_3609135_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-939-3p | chr17 | 3609134 | 3609140 | 7mer-m8 | 3609133 | 3609153 | 148 | -18.94 |
| ADediting_614318 | chr17_3609141_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-150-5p | chr17 | 3609141 | 3609147 | 7mer-m8 | 3609140 | 3609161 | 140 | -15.8 |
| ADediting_614318 | chr17_3609141_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-6778-3p | chr17 | 3609139 | 3609145 | 7mer-m8 | 3609138 | 3609158 | 143 | -13.97 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-518a-3p | chr17 | 3609146 | 3609152 | 7mer-m8 | 3609145 | 3609166 | 145 | -17.15 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-518b | chr17 | 3609146 | 3609152 | 7mer-m8 | 3609145 | 3609165 | 146 | -21.79 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-518c-3p | chr17 | 3609146 | 3609152 | 7mer-m8 | 3609145 | 3609166 | 146 | -18.98 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-518d-3p | chr17 | 3609146 | 3609152 | 7mer-m8 | 3609145 | 3609165 | 145 | -17.84 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-518e-3p | chr17 | 3609147 | 3609153 | 7mer-m8 | 3609146 | 3609167 | 144 | -17.66 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-518f-3p | chr17 | 3609146 | 3609152 | 7mer-m8 | 3609145 | 3609165 | 145 | -17.48 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-526a-3p | chr17 | 3609146 | 3609152 | 7mer-m8 | 3609145 | 3609165 | 146 | -17.71 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1546171 | chr17_3608927_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-5691 | chr17 | 3608921 | 3608928 | 8mer-1a | 3608921 | 3608941 | 147 | -19.02 |
| ADediting_1546171 | chr17_3608927_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-6773-3p | chr17 | 3608925 | 3608932 | 8mer-1a | 3608925 | 3608946 | 142 | -15.63 |
| ADediting_1546171 | chr17_3608927_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-6805-3p | chr17 | 3608921 | 3608928 | 8mer-1a | 3608921 | 3608943 | 154 | -21.46 |
| ADediting_1546172 | chr17_3609087_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-4716-5p | chr17 | 3609084 | 3609090 | 7mer-m8 | 3609083 | 3609104 | 140 | -10.33 |
| ADediting_1546172 | chr17_3609087_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-4781-3p | chr17 | 3609086 | 3609092 | 7mer-m8 | 3609085 | 3609108 | 142 | -11.02 |
| ADediting_1546173 | chr17_3609136_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-12126 | chr17 | 3609133 | 3609139 | 7mer-m8 | 3609132 | 3609157 | 142 | -19.16 |
| ADediting_1546173 | chr17_3609136_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-3614-5p | chr17 | 3609132 | 3609138 | 7mer-m8 | 3609131 | 3609157 | 154 | -27.07 |
| ADediting_1546173 | chr17_3609136_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-635 | chr17 | 3609134 | 3609140 | 7mer-m8 | 3609133 | 3609156 | 146 | -20.26 |
| ADediting_1546173 | chr17_3609136_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-6774-5p | chr17 | 3609134 | 3609140 | 7mer-m8 | 3609133 | 3609157 | 140 | -23.91 |
| ADediting_614291 | chr17_3608922_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-431-5p | chr17 | 3608918 | 3608924 | 7mer-m8 | 3608917 | 3608935 | 147 | -17.87 |
| ADediting_614291 | chr17_3608922_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-5691 | chr17 | 3608921 | 3608928 | 8mer-1a | 3608921 | 3608941 | 147 | -19.02 |
| ADediting_614291 | chr17_3608922_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-6805-3p | chr17 | 3608921 | 3608928 | 8mer-1a | 3608921 | 3608943 | 154 | -21.46 |
| ADediting_614292 | chr17_3608944_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-106a-3p | chr17 | 3608944 | 3608950 | 7mer-m8 | 3608943 | 3608964 | 140 | -12.83 |
| ADediting_614292 | chr17_3608944_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-130a-3p | chr17 | 3608942 | 3608948 | 7mer-m8 | 3608941 | 3608962 | 150 | -12.8 |
| ADediting_614292 | chr17_3608944_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-130b-3p | chr17 | 3608942 | 3608948 | 7mer-m8 | 3608941 | 3608962 | 153 | -16.79 |
| ADediting_614292 | chr17_3608944_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-301a-3p | chr17 | 3608942 | 3608948 | 7mer-m8 | 3608941 | 3608963 | 154 | -13.98 |
| ADediting_614292 | chr17_3608944_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-301b-3p | chr17 | 3608942 | 3608948 | 7mer-m8 | 3608941 | 3608963 | 154 | -16.2 |
| ADediting_614292 | chr17_3608944_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-3666 | chr17 | 3608942 | 3608948 | 7mer-m8 | 3608941 | 3608962 | 145 | -14.22 |
| ADediting_614292 | chr17_3608944_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-4295 | chr17 | 3608942 | 3608948 | 7mer-m8 | 3608941 | 3608958 | 150 | -12.01 |
| ADediting_614292 | chr17_3608944_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-454-3p | chr17 | 3608942 | 3608948 | 7mer-m8 | 3608941 | 3608965 | 151 | -14.37 |
| ADediting_614295 | chr17_3608977_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-6836-3p | chr17 | 3608977 | 3608983 | 7mer-m8 | 3608976 | 3608996 | 145 | -17.69 |
| ADediting_614297 | chr17_3608994_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-8062 | chr17 | 3608992 | 3608998 | 7mer-m8 | 3608991 | 3609011 | 145 | -10.81 |
| ADediting_614298 | chr17_3608997_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-8062 | chr17 | 3608992 | 3608998 | 7mer-m8 | 3608991 | 3609011 | 145 | -10.81 |
| ADediting_614300 | chr17_3608999_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-3074-5p | chr17 | 3608998 | 3609005 | 8mer-1a | 3608998 | 3609014 | 146 | -19.63 |
| ADediting_614301 | chr17_3609003_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-3074-5p | chr17 | 3608998 | 3609005 | 8mer-1a | 3608998 | 3609014 | 146 | -19.63 |
| ADediting_614301 | chr17_3609003_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-6747-3p | chr17 | 3609000 | 3609007 | 8mer-1a | 3609000 | 3609022 | 149 | -23.42 |
| ADediting_614302 | chr17_3609016_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-1200 | chr17 | 3609013 | 3609019 | 7mer-m8 | 3609012 | 3609033 | 141 | -17.86 |
| ADediting_614302 | chr17_3609016_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-6869-5p | chr17 | 3609016 | 3609022 | 7mer-m8 | 3609015 | 3609037 | 146 | -19.73 |
| ADediting_614303 | chr17_3609020_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-6869-5p | chr17 | 3609016 | 3609022 | 7mer-m8 | 3609015 | 3609037 | 146 | -19.73 |
| ADediting_614304 | chr17_3609024_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-5089-5p | chr17 | 3609024 | 3609030 | 7mer-m8 | 3609023 | 3609043 | 147 | -14.68 |
| ADediting_614304 | chr17_3609024_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-6506-5p | chr17 | 3609023 | 3609029 | 7mer-m8 | 3609022 | 3609043 | 147 | -16.07 |
| ADediting_614305 | chr17_3609029_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-10399-5p | chr17 | 3609028 | 3609034 | 7mer-m8 | 3609027 | 3609048 | 148 | -11.23 |
| ADediting_614305 | chr17_3609029_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-5089-5p | chr17 | 3609024 | 3609030 | 7mer-m8 | 3609023 | 3609043 | 147 | -14.68 |
| ADediting_614305 | chr17_3609029_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-6504-3p | chr17 | 3609028 | 3609034 | 7mer-m8 | 3609027 | 3609048 | 148 | -15.29 |
| ADediting_614306 | chr17_3609030_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-10399-5p | chr17 | 3609028 | 3609034 | 7mer-m8 | 3609027 | 3609048 | 148 | -11.23 |
| ADediting_614306 | chr17_3609030_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-6504-3p | chr17 | 3609028 | 3609034 | 7mer-m8 | 3609027 | 3609048 | 148 | -15.29 |
| ADediting_614306 | chr17_3609030_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-7151-3p | chr17 | 3609029 | 3609036 | 8mer-1a | 3609029 | 3609045 | 142 | -15.31 |
| ADediting_614307 | chr17_3609089_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-4716-5p | chr17 | 3609084 | 3609090 | 7mer-m8 | 3609083 | 3609104 | 140 | -10.33 |
| ADediting_614307 | chr17_3609089_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-4781-3p | chr17 | 3609086 | 3609092 | 7mer-m8 | 3609085 | 3609108 | 142 | -11.02 |
| ADediting_614308 | chr17_3609090_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-4781-3p | chr17 | 3609086 | 3609092 | 7mer-m8 | 3609085 | 3609108 | 142 | -11.02 |
| ADediting_614310 | chr17_3609099_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-3663-5p | chr17 | 3609098 | 3609104 | 7mer-m8 | 3609097 | 3609113 | 141 | -19.69 |
| ADediting_614310 | chr17_3609099_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-6131 | chr17 | 3609097 | 3609103 | 7mer-m8 | 3609096 | 3609114 | 140 | -17.94 |
| ADediting_614315 | chr17_3609123_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-125a-3p | chr17 | 3609118 | 3609125 | 8mer-1a | 3609118 | 3609143 | 144 | -23.1 |
| ADediting_614317 | chr17_3609135_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-12126 | chr17 | 3609133 | 3609139 | 7mer-m8 | 3609132 | 3609157 | 142 | -19.16 |
| ADediting_614317 | chr17_3609135_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-3614-5p | chr17 | 3609132 | 3609138 | 7mer-m8 | 3609131 | 3609157 | 154 | -27.07 |
| ADediting_614317 | chr17_3609135_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-635 | chr17 | 3609134 | 3609140 | 7mer-m8 | 3609133 | 3609156 | 146 | -20.26 |
| ADediting_614317 | chr17_3609135_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-6774-5p | chr17 | 3609134 | 3609140 | 7mer-m8 | 3609133 | 3609157 | 140 | -23.91 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-302a-3p | chr17 | 3609147 | 3609153 | 7mer-m8 | 3609146 | 3609167 | 143 | -13.99 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-302b-3p | chr17 | 3609147 | 3609153 | 7mer-m8 | 3609146 | 3609168 | 141 | -9.54 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-302c-3p | chr17 | 3609147 | 3609153 | 7mer-m8 | 3609146 | 3609166 | 145 | -11.96 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-302d-3p | chr17 | 3609147 | 3609153 | 7mer-m8 | 3609146 | 3609168 | 141 | -10.95 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-302e | chr17 | 3609147 | 3609153 | 7mer-m8 | 3609146 | 3609162 | 141 | -8.62 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-372-3p | chr17 | 3609147 | 3609153 | 7mer-m8 | 3609146 | 3609166 | 153 | -17.34 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-512-3p | chr17 | 3609148 | 3609154 | 7mer-m8 | 3609147 | 3609168 | 149 | -16.75 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-519d-3p | chr17 | 3609146 | 3609152 | 7mer-m8 | 3609145 | 3609165 | 146 | -14.53 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-520a-3p | chr17 | 3609147 | 3609153 | 7mer-m8 | 3609146 | 3609167 | 140 | -11.03 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-520b-3p | chr17 | 3609147 | 3609153 | 7mer-m8 | 3609146 | 3609165 | 141 | -16.52 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-520c-3p | chr17 | 3609147 | 3609153 | 7mer-m8 | 3609146 | 3609166 | 146 | -16.52 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-520d-3p | chr17 | 3609147 | 3609153 | 7mer-m8 | 3609146 | 3609169 | 143 | -21.54 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-520e-3p | chr17 | 3609147 | 3609153 | 7mer-m8 | 3609146 | 3609166 | 140 | -13.32 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-520g-3p | chr17 | 3609145 | 3609151 | 7mer-m8 | 3609144 | 3609166 | 151 | -16.77 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-520h | chr17 | 3609145 | 3609151 | 7mer-m8 | 3609144 | 3609165 | 150 | -15.08 |
| ADediting_614319 | chr17_3609150_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-526b-3p | chr17 | 3609146 | 3609152 | 7mer-m8 | 3609145 | 3609165 | 146 | -16.66 |
| ADediting_614321 | chr17_3609910_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-1200 | chr17 | 3609907 | 3609913 | 7mer-m8 | 3609906 | 3609927 | 142 | -22.79 |
| ADediting_614321 | chr17_3609910_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-4649-3p | chr17 | 3609909 | 3609915 | 7mer-m8 | 3609908 | 3609927 | 141 | -16 |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337757 | chr7_5495852_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-589-3p | chr17 | 3608786 | 3608792 | 7mer-m8 | 3608785 | 3608807 | 156 | -25.37 |
| ADediting_496066 | chr15_66496985_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-4512 | chr17 | 3610045 | 3610051 | 7mer-m8 | 3610044 | 3610064 | 148 | -20.36 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-4775 | chr17 | 3608994 | 3609000 | 7mer-m8 | 3608993 | 3609015 | 166 | -20.04 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337757 | chr7_5495852_- | ENSG00000197417.8 | ENST00000225519.4 | SHPK-201 | hsa-miR-589-3p | chr17 | 3608570 | 3608577 | 8mer-1a | 3608570 | 3608592 | 151 | -17.24 |
| Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for SHPK |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000225519.4 | protein_coding |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_614291 | ENST00000225519.4 | chr17_3608922_- | 3106 | -1455.30 | -1455.60 | -1493.70 |
| ADediting_1546171 | ENST00000225519.4 | chr17_3608927_- | 3101 | -1459.00 | -1455.60 | -1493.70 |
| ADediting_614292 | ENST00000225519.4 | chr17_3608944_- | 3084 | -1459.20 | -1455.60 | -1493.70 |
| ADediting_614293 | ENST00000225519.4 | chr17_3608957_- | 3071 | -1457.10 | -1455.60 | -1493.70 |
| ADediting_614294 | ENST00000225519.4 | chr17_3608964_- | 3064 | -1458.40 | -1455.60 | -1493.70 |
| ADediting_614295 | ENST00000225519.4 | chr17_3608977_- | 3051 | -1458.00 | -1455.60 | -1493.70 |
| ADediting_614296 | ENST00000225519.4 | chr17_3608988_- | 3040 | -1456.10 | -1455.60 | -1493.70 |
| ADediting_614297 | ENST00000225519.4 | chr17_3608994_- | 3034 | -1457.20 | -1455.60 | -1493.70 |
| ADediting_614298 | ENST00000225519.4 | chr17_3608997_- | 3031 | -1456.70 | -1455.60 | -1493.70 |
| ADediting_614299 | ENST00000225519.4 | chr17_3608998_- | 3030 | -1455.60 | -1455.60 | -1493.70 |
| ADediting_614300 | ENST00000225519.4 | chr17_3608999_- | 3029 | -1455.60 | -1455.60 | -1493.70 |
| ADediting_614301 | ENST00000225519.4 | chr17_3609003_- | 3025 | -1458.00 | -1455.60 | -1493.70 |
| ADediting_614302 | ENST00000225519.4 | chr17_3609016_- | 3012 | -1455.90 | -1455.60 | -1493.70 |
| ADediting_614303 | ENST00000225519.4 | chr17_3609020_- | 3008 | -1456.00 | -1455.60 | -1493.70 |
| ADediting_614304 | ENST00000225519.4 | chr17_3609024_- | 3004 | -1459.40 | -1455.60 | -1493.70 |
| ADediting_614305 | ENST00000225519.4 | chr17_3609029_- | 2999 | -1455.80 | -1455.60 | -1493.70 |
| ADediting_614306 | ENST00000225519.4 | chr17_3609030_- | 2998 | -1456.40 | -1455.60 | -1493.70 |
| ADediting_1546172 | ENST00000225519.4 | chr17_3609087_- | 2941 | -1456.90 | -1455.60 | -1493.70 |
| ADediting_614307 | ENST00000225519.4 | chr17_3609089_- | 2939 | -1456.30 | -1455.60 | -1493.70 |
| ADediting_614308 | ENST00000225519.4 | chr17_3609090_- | 2938 | -1457.30 | -1455.60 | -1493.70 |
| ADediting_614309 | ENST00000225519.4 | chr17_3609093_- | 2935 | -1458.80 | -1455.60 | -1493.70 |
| ADediting_614310 | ENST00000225519.4 | chr17_3609099_- | 2929 | -1455.60 | -1455.60 | -1493.70 |
| ADediting_614311 | ENST00000225519.4 | chr17_3609104_- | 2924 | -1455.60 | -1455.60 | -1493.70 |
| ADediting_614312 | ENST00000225519.4 | chr17_3609105_- | 2923 | -1455.30 | -1455.60 | -1493.70 |
| ADediting_614313 | ENST00000225519.4 | chr17_3609113_- | 2915 | -1454.90 | -1455.60 | -1493.70 |
| ADediting_614314 | ENST00000225519.4 | chr17_3609118_- | 2910 | -1457.00 | -1455.60 | -1493.70 |
| ADediting_614315 | ENST00000225519.4 | chr17_3609123_- | 2905 | -1455.80 | -1455.60 | -1493.70 |
| ADediting_614316 | ENST00000225519.4 | chr17_3609127_- | 2901 | -1457.00 | -1455.60 | -1493.70 |
| ADediting_614317 | ENST00000225519.4 | chr17_3609135_- | 2893 | -1460.80 | -1455.60 | -1493.70 |
| ADediting_1546173 | ENST00000225519.4 | chr17_3609136_- | 2892 | -1457.40 | -1455.60 | -1493.70 |
| ADediting_614318 | ENST00000225519.4 | chr17_3609141_- | 2887 | -1458.50 | -1455.60 | -1493.70 |
| ADediting_614319 | ENST00000225519.4 | chr17_3609150_- | 2878 | -1458.60 | -1455.60 | -1493.70 |
| ADediting_614320 | ENST00000225519.4 | chr17_3609177_- | 2851 | -1454.90 | -1455.60 | -1493.70 |
| ADediting_614321 | ENST00000225519.4 | chr17_3609910_- | 2118 | -1456.90 | -1455.60 | -1493.70 |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
Top |
Relation with ADAR for SHPK |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | ADediting_614390 | chr17_3619478_- | 0.0610736454991253 | 0.106504590185342 | 0.775796060585273 | 0.0162401898488294 | 1.9768568054683e-09 | 0.332366665065181 |
| DLPFC | ADediting_614391 | chr17_3619490_- | 0.320541863772291 | 0.0566016189462763 | 0.595276794201088 | -0.0302858367689417 | 8.05129506444126e-11 | 0.358275575114724 |
| DLPFC | ADediting_614393 | chr17_3619530_- | 0.166117906778693 | 0.0788465883311076 | 0.394158431627321 | -0.0485636679206705 | 1.7089006299683e-21 | 0.505296256951654 |
| DLPFC | ADediting_614399 | chr17_3619621_- | 0.557857355573995 | 0.0334097722334375 | 0.0473621790254204 | -0.112725656134539 | 1.97443340847896e-14 | 0.416404425775209 |
| DLPFC | ADediting_614406 | chr17_3620415_- | 0.212638440832655 | -0.0709849690220496 | 0.00334015761509061 | -0.166182963215989 | 2.77979213100331e-11 | 0.366387187320367 |
| DLPFC | ADediting_614412 | chr17_3620685_- | 0.64051318136652 | 0.0266256198611681 | 0.109198617110809 | -0.0911551883725539 | 1.30378771290582e-14 | 0.419028359518324 |
| DLPFC | ADediting_614413 | chr17_3620698_- | 0.143688124312598 | 0.0832391066921462 | 0.13886478896719 | -0.0842509854072983 | 4.60343286235174e-19 | 0.477537769994106 |
| DLPFC | ADediting_614445 | chr17_3631639_- | 0.706340286424922 | 0.0214837418380301 | 0.033376281824243 | -0.120880338222248 | 2.3078894099025e-14 | 0.415411817106821 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 5.20914817969236e-20 | 0.488648417589233 | 7.316089214156e-09 | 0.321041993873114 | 4.24450445233738e-62 | 0.770141956695553 |
| AC | 7.46683534605698e-40 | 0.71133372766211 | 5.25250538448676e-24 | 0.581403937490903 | 5.26874611882597e-22 | 0.559618836651607 |
| PCC | 3.47471409981613e-17 | 0.560379819933876 | 3.64739833632988e-12 | 0.475446215994474 | 6.73768770263379e-07 | 0.35036597537775 |
| CER | 6.9939609770509e-24 | 0.705382459517205 | 1.83357760251908e-17 | 0.622495403650148 | 1.27195580726482e-05 | 0.348091964525041 |
| TCX | 1.1787763082698e-05 | 0.349331772596273 | 0.335953936818199 | -0.0791010569602164 | 8.76433118146182e-16 | 0.595827909545619 |
| FP | 3.24206605898912e-21 | 0.631721381502444 | 7.27581468863571e-15 | 0.540051897457876 | 2.75028263928673e-14 | 0.530110836813448 |
| IFG | 0.000256653097006775 | 0.668875888409209 | 0.00481953251228644 | 0.545259216409335 | 0.00172192656994264 | 0.594563211620127 |
| PG | 0.000884767692614151 | 0.241789879001307 | 0.000825911149856451 | 0.24314029440442 | 2.2833049422393e-06 | 0.338562106672956 |
| STG | 7.34334034960434e-09 | 0.580090362533432 | 0.000585635618958537 | 0.367429111198956 | 9.61975011618174e-05 | 0.412585942956496 |
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Relation with AD stages for SHPK |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| CER | 0.000142685311986673 | 0.357950023778275 |
| TCX | 1.50871040136811e-05 | 0.406811337102211 |
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RelatedDrugs for SHPK |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SHPK |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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