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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for CBX7 |
 Gene summary |
| Gene information | Gene symbol | CBX7 | Gene ID | 23492 |
| Gene name | chromobox 7 | |
| Synonyms | - | |
| Cytomap | 22q13.1 | |
| Type of gene | protein-coding | |
| Description | chromobox protein homolog 7 | |
| Modification date | 20200313 | |
| UniProtAcc | O95931, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for CBX7 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_992354(39121484, -), ADediting_992355(39121624, -), ADediting_992356(39121628, -), ADediting_992357(39121689, -), ADediting_992358(39122861, -), ADediting_992359(39122862, -), ADediting_992360(39122888, -), ADediting_992361(39123456, -), ADediting_992362(39123508, -), ADediting_992363(39123544, -), ADediting_992364(39123559, -), ADediting_992365(39123567, -), ADediting_992366(39123579, -), ADediting_992367(39124964, -), ADediting_992368(39124965, -), ADediting_992369(39124966, -), ADediting_992370(39124977, -), ADediting_992371(39125047, -), ADediting_992372(39125049, -), ADediting_992373(39125057, -), ADediting_992374(39125069, -), ADediting_992375(39125082, -), ADediting_992376(39125086, -), ADediting_992377(39125431, -), ADediting_992378(39125565, -), ADediting_992379(39125566, -), ADediting_992380(39125574, -), ADediting_992381(39125582, -), ADediting_992382(39126039, -), ADediting_992383(39126058, -), ADediting_992384(39126061, -), ADediting_992385(39126144, -), ADediting_992386(39126161, -), ADediting_992387(39126162, -), ADediting_992388(39126191, -), ADediting_992389(39126218, -), ADediting_992390(39126432, -), ADediting_992391(39126437, -), ADediting_992392(39126446, -), ADediting_992393(39126463, -), ADediting_992394(39126472, -), ADediting_992395(39126479, -), ADediting_992396(39126499, -), ADediting_992397(39126528, -), ADediting_992398(39126538, -), ADediting_992399(39126539, -), ADediting_992400(39126548, -), ADediting_992401(39127451, -), ADediting_992402(39127478, -), ADediting_992403(39127540, -), ADediting_992404(39127543, -), ADediting_992405(39127594, -), ADediting_992406(39127622, -), ADediting_992407(39127741, -), ADediting_992408(39127751, -), ADediting_992409(39127752, -), ADediting_992410(39127761, -), ADediting_992411(39127797, -), ADediting_992412(39127802, -), ADediting_992413(39127811, -), ADediting_992414(39127814, -), ADediting_992415(39127828, -), ADediting_992416(39127900, -), ADediting_992417(39127907, -), ADediting_992418(39127923, -), ADediting_992419(39127944, -), ADediting_992420(39127974, -), ADediting_992421(39128027, -), ADediting_992422(39128040, -), ADediting_992423(39128094, -), ADediting_992424(39128174, -), ADediting_992425(39128233, -), ADediting_992426(39129526, -), ADediting_992427(39129543, -), ADediting_992428(39129555, -), ADediting_992429(39129616, -), ADediting_992430(39129678, -), ADediting_992431(39129691, -), ADediting_992432(39137409, -), ADediting_992433(39137411, -), ADediting_992434(39137416, -), ADediting_992435(39137417, -), ADediting_992436(39137425, -), ADediting_992437(39137446, -), ADediting_992438(39137473, -), ADediting_992439(39137477, -), ADediting_992440(39137481, -), ADediting_992441(39137486, -), ADediting_992442(39137487, -), ADediting_992443(39137505, -), ADediting_992444(39137513, -), ADediting_992445(39137516, -), ADediting_992446(39137517, -), ADediting_992447(39137519, -), ADediting_992448(39137522, -), ADediting_992449(39137531, -), ADediting_992450(39137542, -), ADediting_992451(39137552, -), ADediting_992452(39137553, -), ADediting_992453(39137566, -), ADediting_992454(39137568, -), ADediting_992455(39137573, -), ADediting_992456(39137576, -), ADediting_992457(39137605, -), ADediting_992458(39137615, -), ADediting_992459(39137621, -), ADediting_992460(39137622, -), ADediting_992461(39137925, -), ADediting_992462(39137937, -), ADediting_992463(39137938, -), ADediting_992464(39138000, -), ADediting_992465(39138014, -), ADediting_992466(39138017, -), ADediting_992467(39138059, -), ADediting_992468(39138069, -), ADediting_992469(39138081, -), ADediting_992470(39138118, -), ADediting_992471(39139328, -), ADediting_992472(39139350, -), ADediting_992473(39139355, -), ADediting_992474(39139367, -), ADediting_992475(39139446, -), ADediting_992476(39139468, -), ADediting_992477(39139513, -), ADediting_992478(39139619, -), ADediting_992479(39139627, -), ADediting_992480(39139795, -), ADediting_992481(39139808, -), ADediting_992482(39139830, -), ADediting_992483(39139854, -), ADediting_992484(39139870, -), ADediting_992485(39139924, -), ADediting_992486(39140984, -), ADediting_992487(39141000, -), ADediting_992488(39141586, -), ADediting_992489(39141637, -), ADediting_992490(39146796, -), ADediting_992491(39147192, -), ADediting_992492(39147201, -), ADediting_992493(39147202, -), ADediting_992494(39147228, -), ADediting_992495(39147241, -), ADediting_992496(39149254, -), ADediting_992497(39149604, -), ADediting_1570702(39125588, -), ADediting_1570703(39126107, -), ADediting_1570704(39126225, -), ADediting_1570705(39126226, -), ADediting_1570706(39129506, -), ADediting_1570707(39129552, -), ADediting_1570708(39129596, -), ADediting_1570709(39129684, -), ADediting_1570710(39137464, -), ADediting_1570711(39137541, -), ADediting_1570712(39137616, -), ADediting_1570713(39137988, -), ADediting_1570714(39138023, -), ADediting_1570715(39139482, -), ADediting_1570716(39139538, -), ADediting_1570717(39147333, -), |
Top |
RNA editing positional annotations for CBX7 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_992354 | chr22_39121484_- | upstream |
| ADediting_992355 | chr22_39121624_- | intergenic |
| ADediting_992356 | chr22_39121628_- | intergenic |
| ADediting_992357 | chr22_39121689_- | intergenic |
| ADediting_992358 | chr22_39122861_- | intergenic |
| ADediting_992359 | chr22_39122862_- | intergenic |
| ADediting_992360 | chr22_39122888_- | intergenic |
| ADediting_992361 | chr22_39123456_- | intergenic |
| ADediting_992362 | chr22_39123508_- | intergenic |
| ADediting_992363 | chr22_39123544_- | intergenic |
| ADediting_992364 | chr22_39123559_- | intergenic |
| ADediting_992365 | chr22_39123567_- | intergenic |
| ADediting_992366 | chr22_39123579_- | intergenic |
| ADediting_992367 | chr22_39124964_- | intergenic |
| ADediting_992368 | chr22_39124965_- | intergenic |
| ADediting_992369 | chr22_39124966_- | intergenic |
| ADediting_992370 | chr22_39124977_- | intergenic |
| ADediting_992371 | chr22_39125047_- | intergenic |
| ADediting_992372 | chr22_39125049_- | intergenic |
| ADediting_992373 | chr22_39125057_- | intergenic |
| ADediting_992374 | chr22_39125069_- | intergenic |
| ADediting_992375 | chr22_39125082_- | intergenic |
| ADediting_992376 | chr22_39125086_- | intergenic |
| ADediting_992377 | chr22_39125431_- | intergenic |
| ADediting_992378 | chr22_39125565_- | intergenic |
| ADediting_992379 | chr22_39125566_- | intergenic |
| ADediting_992380 | chr22_39125574_- | intergenic |
| ADediting_992381 | chr22_39125582_- | intergenic |
| ADediting_992382 | chr22_39126039_- | intergenic |
| ADediting_992383 | chr22_39126058_- | intergenic |
| ADediting_992384 | chr22_39126061_- | intergenic |
| ADediting_992385 | chr22_39126144_- | intergenic |
| ADediting_992386 | chr22_39126161_- | intergenic |
| ADediting_992387 | chr22_39126162_- | intergenic |
| ADediting_992388 | chr22_39126191_- | intergenic |
| ADediting_992389 | chr22_39126218_- | intergenic |
| ADediting_992390 | chr22_39126432_- | intergenic |
| ADediting_992391 | chr22_39126437_- | intergenic |
| ADediting_992392 | chr22_39126446_- | intergenic |
| ADediting_992393 | chr22_39126463_- | intergenic |
| ADediting_992394 | chr22_39126472_- | intergenic |
| ADediting_992395 | chr22_39126479_- | intergenic |
| ADediting_992396 | chr22_39126499_- | intergenic |
| ADediting_992397 | chr22_39126528_- | intergenic |
| ADediting_992398 | chr22_39126538_- | intergenic |
| ADediting_992399 | chr22_39126539_- | intergenic |
| ADediting_992400 | chr22_39126548_- | intergenic |
| ADediting_992401 | chr22_39127451_- | intergenic |
| ADediting_992402 | chr22_39127478_- | intergenic |
| ADediting_992403 | chr22_39127540_- | intergenic |
| ADediting_992404 | chr22_39127543_- | intergenic |
| ADediting_992405 | chr22_39127594_- | intergenic |
| ADediting_992406 | chr22_39127622_- | intergenic |
| ADediting_992407 | chr22_39127741_- | intergenic |
| ADediting_992408 | chr22_39127751_- | intergenic |
| ADediting_992409 | chr22_39127752_- | intergenic |
| ADediting_992410 | chr22_39127761_- | intergenic |
| ADediting_992411 | chr22_39127797_- | intergenic |
| ADediting_992412 | chr22_39127802_- | intergenic |
| ADediting_992413 | chr22_39127811_- | intergenic |
| ADediting_992414 | chr22_39127814_- | intergenic |
| ADediting_992415 | chr22_39127828_- | intergenic |
| ADediting_992416 | chr22_39127900_- | intergenic |
| ADediting_992417 | chr22_39127907_- | intergenic |
| ADediting_992418 | chr22_39127923_- | intergenic |
| ADediting_992419 | chr22_39127944_- | intergenic |
| ADediting_992420 | chr22_39127974_- | intergenic |
| ADediting_992421 | chr22_39128027_- | intergenic |
| ADediting_992422 | chr22_39128040_- | intergenic |
| ADediting_992423 | chr22_39128094_- | intergenic |
| ADediting_992424 | chr22_39128174_- | intergenic |
| ADediting_992425 | chr22_39128233_- | intergenic |
| ADediting_992426 | chr22_39129526_- | intergenic |
| ADediting_992427 | chr22_39129543_- | intergenic |
| ADediting_992428 | chr22_39129555_- | intergenic |
| ADediting_992429 | chr22_39129616_- | intergenic |
| ADediting_992430 | chr22_39129678_- | intergenic |
| ADediting_992431 | chr22_39129691_- | intergenic |
| ADediting_992432 | chr22_39137409_- | intronic |
| ADediting_992433 | chr22_39137411_- | intronic |
| ADediting_992434 | chr22_39137416_- | intronic |
| ADediting_992435 | chr22_39137417_- | intronic |
| ADediting_992436 | chr22_39137425_- | intronic |
| ADediting_992437 | chr22_39137446_- | intronic |
| ADediting_992438 | chr22_39137473_- | intronic |
| ADediting_992439 | chr22_39137477_- | intronic |
| ADediting_992440 | chr22_39137481_- | intronic |
| ADediting_992441 | chr22_39137486_- | intronic |
| ADediting_992442 | chr22_39137487_- | intronic |
| ADediting_992443 | chr22_39137505_- | intronic |
| ADediting_992444 | chr22_39137513_- | intronic |
| ADediting_992445 | chr22_39137516_- | intronic |
| ADediting_992446 | chr22_39137517_- | intronic |
| ADediting_992447 | chr22_39137519_- | intronic |
| ADediting_992448 | chr22_39137522_- | intronic |
| ADediting_992449 | chr22_39137531_- | intronic |
| ADediting_992450 | chr22_39137542_- | intronic |
| ADediting_992451 | chr22_39137552_- | intronic |
| ADediting_992452 | chr22_39137553_- | intronic |
| ADediting_992453 | chr22_39137566_- | intronic |
| ADediting_992454 | chr22_39137568_- | intronic |
| ADediting_992455 | chr22_39137573_- | intronic |
| ADediting_992456 | chr22_39137576_- | intronic |
| ADediting_992457 | chr22_39137605_- | intronic |
| ADediting_992458 | chr22_39137615_- | intronic |
| ADediting_992459 | chr22_39137621_- | intronic |
| ADediting_992460 | chr22_39137622_- | intronic |
| ADediting_992461 | chr22_39137925_- | intronic |
| ADediting_992462 | chr22_39137937_- | intronic |
| ADediting_992463 | chr22_39137938_- | intronic |
| ADediting_992464 | chr22_39138000_- | intronic |
| ADediting_992465 | chr22_39138014_- | intronic |
| ADediting_992466 | chr22_39138017_- | intronic |
| ADediting_992467 | chr22_39138059_- | intronic |
| ADediting_992468 | chr22_39138069_- | intronic |
| ADediting_992469 | chr22_39138081_- | intronic |
| ADediting_992470 | chr22_39138118_- | intronic |
| ADediting_992471 | chr22_39139328_- | intronic |
| ADediting_992472 | chr22_39139350_- | intronic |
| ADediting_992473 | chr22_39139355_- | intronic |
| ADediting_992474 | chr22_39139367_- | intronic |
| ADediting_992475 | chr22_39139446_- | intronic |
| ADediting_992476 | chr22_39139468_- | intronic |
| ADediting_992477 | chr22_39139513_- | intronic |
| ADediting_992478 | chr22_39139619_- | intronic |
| ADediting_992479 | chr22_39139627_- | intronic |
| ADediting_992480 | chr22_39139795_- | intronic |
| ADediting_992481 | chr22_39139808_- | intronic |
| ADediting_992482 | chr22_39139830_- | intronic |
| ADediting_992483 | chr22_39139854_- | intronic |
| ADediting_992484 | chr22_39139870_- | intronic |
| ADediting_992485 | chr22_39139924_- | intronic |
| ADediting_992486 | chr22_39140984_- | intronic |
| ADediting_992487 | chr22_39141000_- | intronic |
| ADediting_992488 | chr22_39141586_- | intronic |
| ADediting_992489 | chr22_39141637_- | intronic |
| ADediting_992490 | chr22_39146796_- | intronic |
| ADediting_992491 | chr22_39147192_- | intronic |
| ADediting_992492 | chr22_39147201_- | intronic |
| ADediting_992493 | chr22_39147202_- | intronic |
| ADediting_992494 | chr22_39147228_- | intronic |
| ADediting_992495 | chr22_39147241_- | intronic |
| ADediting_992496 | chr22_39149254_- | intronic |
| ADediting_992497 | chr22_39149604_- | intronic |
| ADediting_1570702 | chr22_39125588_- | intergenic |
| ADediting_1570703 | chr22_39126107_- | intergenic |
| ADediting_1570704 | chr22_39126225_- | intergenic |
| ADediting_1570705 | chr22_39126226_- | intergenic |
| ADediting_1570706 | chr22_39129506_- | intergenic |
| ADediting_1570707 | chr22_39129552_- | intergenic |
| ADediting_1570708 | chr22_39129596_- | intergenic |
| ADediting_1570709 | chr22_39129684_- | intergenic |
| ADediting_1570710 | chr22_39137464_- | intronic |
| ADediting_1570711 | chr22_39137541_- | intronic |
| ADediting_1570712 | chr22_39137616_- | intronic |
| ADediting_1570713 | chr22_39137988_- | intronic |
| ADediting_1570714 | chr22_39138023_- | intronic |
| ADediting_1570715 | chr22_39139482_- | intronic |
| ADediting_1570716 | chr22_39139538_- | intronic |
| ADediting_1570717 | chr22_39147333_- | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_992354 | chr22_39121484_- | SINE | Alu | Name=AluSg |
| ADediting_992355 | chr22_39121624_- | SINE | Alu | Name=AluSg |
| ADediting_992356 | chr22_39121628_- | SINE | Alu | Name=AluSg |
| ADediting_992357 | chr22_39121689_- | SINE | Alu | Name=AluSg |
| ADediting_992358 | chr22_39122861_- | SINE | Alu | Name=AluY |
| ADediting_992359 | chr22_39122862_- | SINE | Alu | Name=AluY |
| ADediting_992360 | chr22_39122888_- | SINE | Alu | Name=AluY |
| ADediting_992361 | chr22_39123456_- | SINE | Alu | Name=AluJb |
| ADediting_992362 | chr22_39123508_- | SINE | Alu | Name=AluJb |
| ADediting_992363 | chr22_39123544_- | SINE | Alu | Name=AluJb |
| ADediting_992364 | chr22_39123559_- | SINE | Alu | Name=AluJb |
| ADediting_992365 | chr22_39123567_- | SINE | Alu | Name=AluJb |
| ADediting_992366 | chr22_39123579_- | SINE | Alu | Name=AluJb |
| ADediting_992367 | chr22_39124964_- | SINE | Alu | Name=AluSx1 |
| ADediting_992368 | chr22_39124965_- | SINE | Alu | Name=AluSx1 |
| ADediting_992369 | chr22_39124966_- | SINE | Alu | Name=AluSx1 |
| ADediting_992370 | chr22_39124977_- | SINE | Alu | Name=AluSx1 |
| ADediting_992371 | chr22_39125047_- | SINE | Alu | Name=AluSx1 |
| ADediting_992372 | chr22_39125049_- | SINE | Alu | Name=AluSx1 |
| ADediting_992373 | chr22_39125057_- | SINE | Alu | Name=AluSx1 |
| ADediting_992374 | chr22_39125069_- | SINE | Alu | Name=AluSx1 |
| ADediting_992375 | chr22_39125082_- | SINE | Alu | Name=AluSx1 |
| ADediting_992376 | chr22_39125086_- | SINE | Alu | Name=AluSx1 |
| ADediting_992377 | chr22_39125431_- | SINE | Alu | Name=AluSx1 |
| ADediting_992378 | chr22_39125565_- | SINE | Alu | Name=AluSx1 |
| ADediting_992379 | chr22_39125566_- | SINE | Alu | Name=AluSx1 |
| ADediting_992380 | chr22_39125574_- | SINE | Alu | Name=AluSx1 |
| ADediting_992381 | chr22_39125582_- | SINE | Alu | Name=AluSx1 |
| ADediting_992382 | chr22_39126039_- | SINE | Alu | Name=AluJr |
| ADediting_992383 | chr22_39126058_- | SINE | Alu | Name=AluJr |
| ADediting_992384 | chr22_39126061_- | SINE | Alu | Name=AluJr |
| ADediting_992385 | chr22_39126144_- | SINE | Alu | Name=AluJr |
| ADediting_992386 | chr22_39126161_- | SINE | Alu | Name=AluJr |
| ADediting_992387 | chr22_39126162_- | SINE | Alu | Name=AluJr |
| ADediting_992388 | chr22_39126191_- | SINE | Alu | Name=AluJr |
| ADediting_992389 | chr22_39126218_- | SINE | Alu | Name=AluJr |
| ADediting_992390 | chr22_39126432_- | SINE | Alu | Name=AluSx |
| ADediting_992391 | chr22_39126437_- | SINE | Alu | Name=AluSx |
| ADediting_992392 | chr22_39126446_- | SINE | Alu | Name=AluSx |
| ADediting_992393 | chr22_39126463_- | SINE | Alu | Name=AluSx |
| ADediting_992394 | chr22_39126472_- | SINE | Alu | Name=AluSx |
| ADediting_992395 | chr22_39126479_- | SINE | Alu | Name=AluSx |
| ADediting_992396 | chr22_39126499_- | SINE | Alu | Name=AluSx |
| ADediting_992397 | chr22_39126528_- | SINE | Alu | Name=AluSx |
| ADediting_992398 | chr22_39126538_- | SINE | Alu | Name=AluSx |
| ADediting_992399 | chr22_39126539_- | SINE | Alu | Name=AluSx |
| ADediting_992400 | chr22_39126548_- | SINE | Alu | Name=AluSx |
| ADediting_992401 | chr22_39127451_- | SINE | Alu | Name=AluSg7 |
| ADediting_992402 | chr22_39127478_- | SINE | Alu | Name=AluSg7 |
| ADediting_992403 | chr22_39127540_- | SINE | Alu | Name=AluSg7 |
| ADediting_992404 | chr22_39127543_- | SINE | Alu | Name=AluSg7 |
| ADediting_992405 | chr22_39127594_- | SINE | Alu | Name=AluSg7 |
| ADediting_992406 | chr22_39127622_- | SINE | Alu | Name=AluSg7 |
| ADediting_992407 | chr22_39127741_- | SINE | Alu | Name=AluSg |
| ADediting_992408 | chr22_39127751_- | SINE | Alu | Name=AluSg |
| ADediting_992409 | chr22_39127752_- | SINE | Alu | Name=AluSg |
| ADediting_992410 | chr22_39127761_- | SINE | Alu | Name=AluSg |
| ADediting_992411 | chr22_39127797_- | SINE | Alu | Name=AluSg |
| ADediting_992412 | chr22_39127802_- | SINE | Alu | Name=AluSg |
| ADediting_992413 | chr22_39127811_- | SINE | Alu | Name=AluSg |
| ADediting_992414 | chr22_39127814_- | SINE | Alu | Name=AluSg |
| ADediting_992415 | chr22_39127828_- | SINE | Alu | Name=AluSg |
| ADediting_992416 | chr22_39127900_- | SINE | Alu | Name=AluSg |
| ADediting_992417 | chr22_39127907_- | SINE | Alu | Name=AluSg |
| ADediting_992418 | chr22_39127923_- | SINE | Alu | Name=AluSg |
| ADediting_992419 | chr22_39127944_- | SINE | Alu | Name=AluSg |
| ADediting_992420 | chr22_39127974_- | SINE | Alu | Name=AluSg |
| ADediting_992421 | chr22_39128027_- | SINE | Alu | Name=AluYj4 |
| ADediting_992422 | chr22_39128040_- | SINE | Alu | Name=AluYj4 |
| ADediting_992423 | chr22_39128094_- | SINE | Alu | Name=AluYj4 |
| ADediting_992424 | chr22_39128174_- | SINE | Alu | Name=AluYj4 |
| ADediting_992425 | chr22_39128233_- | SINE | Alu | Name=AluYj4 |
| ADediting_992426 | chr22_39129526_- | SINE | Alu | Name=AluSx1 |
| ADediting_992427 | chr22_39129543_- | SINE | Alu | Name=AluSx1 |
| ADediting_992428 | chr22_39129555_- | SINE | Alu | Name=AluSx1 |
| ADediting_992429 | chr22_39129616_- | SINE | Alu | Name=AluSx1 |
| ADediting_992430 | chr22_39129678_- | SINE | Alu | Name=AluSx1 |
| ADediting_992431 | chr22_39129691_- | SINE | Alu | Name=AluSx1 |
| ADediting_992432 | chr22_39137409_- | SINE | Alu | Name=AluSq2 |
| ADediting_992433 | chr22_39137411_- | SINE | Alu | Name=AluSq2 |
| ADediting_992434 | chr22_39137416_- | SINE | Alu | Name=AluSq2 |
| ADediting_992435 | chr22_39137417_- | SINE | Alu | Name=AluSq2 |
| ADediting_992436 | chr22_39137425_- | SINE | Alu | Name=AluSq2 |
| ADediting_992437 | chr22_39137446_- | SINE | Alu | Name=AluSq2 |
| ADediting_992438 | chr22_39137473_- | SINE | Alu | Name=AluSq2 |
| ADediting_992439 | chr22_39137477_- | SINE | Alu | Name=AluSq2 |
| ADediting_992440 | chr22_39137481_- | SINE | Alu | Name=AluSq2 |
| ADediting_992441 | chr22_39137486_- | SINE | Alu | Name=AluSq2 |
| ADediting_992442 | chr22_39137487_- | SINE | Alu | Name=AluSq2 |
| ADediting_992443 | chr22_39137505_- | SINE | Alu | Name=AluSq2 |
| ADediting_992444 | chr22_39137513_- | SINE | Alu | Name=AluSq2 |
| ADediting_992445 | chr22_39137516_- | SINE | Alu | Name=AluSq2 |
| ADediting_992446 | chr22_39137517_- | SINE | Alu | Name=AluSq2 |
| ADediting_992447 | chr22_39137519_- | SINE | Alu | Name=AluSq2 |
| ADediting_992448 | chr22_39137522_- | SINE | Alu | Name=AluSq2 |
| ADediting_992449 | chr22_39137531_- | SINE | Alu | Name=AluSq2 |
| ADediting_992450 | chr22_39137542_- | SINE | Alu | Name=AluSq2 |
| ADediting_992451 | chr22_39137552_- | SINE | Alu | Name=AluSq2 |
| ADediting_992452 | chr22_39137553_- | SINE | Alu | Name=AluSq2 |
| ADediting_992453 | chr22_39137566_- | SINE | Alu | Name=AluSq2 |
| ADediting_992454 | chr22_39137568_- | SINE | Alu | Name=AluSq2 |
| ADediting_992455 | chr22_39137573_- | SINE | Alu | Name=AluSq2 |
| ADediting_992456 | chr22_39137576_- | SINE | Alu | Name=AluSq2 |
| ADediting_992457 | chr22_39137605_- | SINE | Alu | Name=AluSq2 |
| ADediting_992458 | chr22_39137615_- | SINE | Alu | Name=AluSq2 |
| ADediting_992459 | chr22_39137621_- | SINE | Alu | Name=AluSq2 |
| ADediting_992460 | chr22_39137622_- | SINE | Alu | Name=AluSq2 |
| ADediting_992461 | chr22_39137925_- | SINE | Alu | Name=AluY |
| ADediting_992462 | chr22_39137937_- | SINE | Alu | Name=AluY |
| ADediting_992463 | chr22_39137938_- | SINE | Alu | Name=AluY |
| ADediting_992464 | chr22_39138000_- | SINE | Alu | Name=AluY |
| ADediting_992465 | chr22_39138014_- | SINE | Alu | Name=AluY |
| ADediting_992466 | chr22_39138017_- | SINE | Alu | Name=AluY |
| ADediting_992467 | chr22_39138059_- | SINE | Alu | Name=AluY |
| ADediting_992468 | chr22_39138069_- | SINE | Alu | Name=AluY |
| ADediting_992469 | chr22_39138081_- | SINE | Alu | Name=AluY |
| ADediting_992470 | chr22_39138118_- | SINE | Alu | Name=AluY |
| ADediting_992471 | chr22_39139328_- | SINE | Alu | Name=AluSz6 |
| ADediting_992472 | chr22_39139350_- | SINE | Alu | Name=AluSz6 |
| ADediting_992473 | chr22_39139355_- | SINE | Alu | Name=AluSz6 |
| ADediting_992474 | chr22_39139367_- | SINE | Alu | Name=AluSz6 |
| ADediting_992475 | chr22_39139446_- | SINE | Alu | Name=AluY |
| ADediting_992476 | chr22_39139468_- | SINE | Alu | Name=AluY |
| ADediting_992477 | chr22_39139513_- | SINE | Alu | Name=AluY |
| ADediting_992478 | chr22_39139619_- | SINE | Alu | Name=AluY |
| ADediting_992479 | chr22_39139627_- | SINE | Alu | Name=AluY |
| ADediting_992480 | chr22_39139795_- | SINE | Alu | Name=AluSz6 |
| ADediting_992481 | chr22_39139808_- | SINE | Alu | Name=AluSz6 |
| ADediting_992482 | chr22_39139830_- | SINE | Alu | Name=AluSz6 |
| ADediting_992483 | chr22_39139854_- | SINE | Alu | Name=AluSz6 |
| ADediting_992484 | chr22_39139870_- | SINE | Alu | Name=AluSz6 |
| ADediting_992485 | chr22_39139924_- | SINE | Alu | Name=AluSz6 |
| ADediting_992488 | chr22_39141586_- | SINE | Alu | Name=AluSx |
| ADediting_992489 | chr22_39141637_- | SINE | Alu | Name=AluSx |
| ADediting_992491 | chr22_39147192_- | SINE | Alu | Name=AluSz |
| ADediting_992492 | chr22_39147201_- | SINE | Alu | Name=AluSz |
| ADediting_992493 | chr22_39147202_- | SINE | Alu | Name=AluSz |
| ADediting_992494 | chr22_39147228_- | SINE | Alu | Name=AluSz |
| ADediting_992495 | chr22_39147241_- | SINE | Alu | Name=AluSz |
| ADediting_992496 | chr22_39149254_- | SINE | MIR | Name=MIRc |
| ADediting_992497 | chr22_39149604_- | SINE | MIR | Name=MIR3 |
| ADediting_1570702 | chr22_39125588_- | SINE | Alu | Name=AluSx1 |
| ADediting_1570703 | chr22_39126107_- | SINE | Alu | Name=AluJr |
| ADediting_1570704 | chr22_39126225_- | SINE | Alu | Name=AluJr |
| ADediting_1570705 | chr22_39126226_- | SINE | Alu | Name=AluJr |
| ADediting_1570706 | chr22_39129506_- | SINE | Alu | Name=AluSx1 |
| ADediting_1570707 | chr22_39129552_- | SINE | Alu | Name=AluSx1 |
| ADediting_1570708 | chr22_39129596_- | SINE | Alu | Name=AluSx1 |
| ADediting_1570709 | chr22_39129684_- | SINE | Alu | Name=AluSx1 |
| ADediting_1570710 | chr22_39137464_- | SINE | Alu | Name=AluSq2 |
| ADediting_1570711 | chr22_39137541_- | SINE | Alu | Name=AluSq2 |
| ADediting_1570712 | chr22_39137616_- | SINE | Alu | Name=AluSq2 |
| ADediting_1570713 | chr22_39137988_- | SINE | Alu | Name=AluY |
| ADediting_1570714 | chr22_39138023_- | SINE | Alu | Name=AluY |
| ADediting_1570715 | chr22_39139482_- | SINE | Alu | Name=AluY |
| ADediting_1570716 | chr22_39139538_- | SINE | Alu | Name=AluY |
| ADediting_1570717 | chr22_39147333_- | SINE | Alu | Name=AluSz |
Top |
RNA A-to-I editing events in the alternative splicing sites for CBX7 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CBX7 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
Top |
Protein coding region RNA A-to-I editings for CBX7 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
Top |
The effects of the RNA editing to the miRNA binding sites for CBX7 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337757 | chr7_5495852_- | ENSG00000100307.13 | ENST00000216133.10 | CBX7-201 | hsa-miR-589-3p | chr22 | 39132176 | 39132182 | 7mer-m8 | 39132175 | 39132201 | 143 | -19.09 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000100307.13 | ENST00000216133.10 | CBX7-201 | hsa-miR-589-3p | chr22 | 39132297 | 39132303 | 7mer-m8 | 39132296 | 39132321 | 147 | -15.74 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000100307.13 | ENST00000216133.10 | CBX7-201 | hsa-miR-589-3p | chr22 | 39133678 | 39133684 | 7mer-m8 | 39133677 | 39133702 | 160 | -31.73 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000100307.13 | ENST00000401405.7 | CBX7-202 | hsa-miR-589-3p | chr22 | 39133678 | 39133684 | 7mer-m8 | 39133677 | 39133702 | 160 | -31.73 |
| ADediting_1337758 | chr7_5495892_- | ENSG00000100307.13 | ENST00000216133.10 | CBX7-201 | hsa-miR-589-5p | chr22 | 39132218 | 39132225 | 8mer-1a | 39132218 | 39132239 | 147 | -15.92 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000100307.13 | ENST00000216133.10 | CBX7-201 | hsa-miR-381-3p | chr22 | 39133054 | 39133060 | 7mer-m8 | 39133053 | 39133074 | 145 | -14.25 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_107020 | chr1_37500952_- | ENSG00000100307.13 | ENST00000216133.10 | CBX7-201 | hsa-miR-5581-3p | chr22 | 39132410 | 39132417 | 8mer-1a | 39132410 | 39132432 | 154 | -27.22 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000100307.13 | ENST00000216133.10 | CBX7-201 | hsa-miR-589-3p | chr22 | 39131125 | 39131131 | 7mer-m8 | 39131124 | 39131147 | 145 | -14.8 |
| ADediting_291761 | chr11_93733708_- | ENSG00000100307.13 | ENST00000216133.10 | CBX7-201 | hsa-miR-1304-3p | chr22 | 39132484 | 39132490 | 7mer-m8 | 39132483 | 39132502 | 145 | -17.22 |
| ADediting_527135 | chr16_24203190_+ | ENSG00000100307.13 | ENST00000216133.10 | CBX7-201 | hsa-miR-1273h-3p | chr22 | 39131676 | 39131682 | 7mer-m8 | 39131675 | 39131698 | 143 | -20.29 |
| Differentially expressed gene-miRNA network |
Top |
The effects of the RNA editing to the stability of the RNA structures for CBX7 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for CBX7 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| CER | ADediting_1570713 | chr22_39137988_- | 0.00810243262835598 | 0.215446931075029 | 3.9843587508607e-07 | 0.39988149994314 | 0.00248775687650768 | 0.245244604153575 |
| CER | ADediting_992433 | chr22_39137411_- | 0.0102780644055046 | 0.208969491219835 | 1.6368166734291e-05 | 0.343944178992888 | 0.127649267908453 | 0.124945416245127 |
| CER | ADediting_992438 | chr22_39137473_- | 0.00074884427489618 | 0.272302242737734 | 1.73085642232543e-06 | 0.378995957045788 | 0.00117650747577135 | 0.262449470830948 |
| CER | ADediting_992439 | chr22_39137477_- | 0.152519609232762 | 0.117392930864257 | 2.4321852347504e-05 | 0.337309500370401 | 0.00438067482659401 | 0.231418767143925 |
| DLPFC | ADediting_992441 | chr22_39137486_- | 0.230745666509127 | 0.0682631748415608 | 0.367047884905387 | -0.0514049020713071 | 8.14293670624728e-14 | 0.407269321990369 |
| TCX | ADediting_992441 | chr22_39137486_- | 0.742740192554328 | 0.0270207518055694 | 0.258541358976596 | -0.0928287010025231 | 6.53603519414892e-05 | 0.320052499900263 |
| DLPFC | ADediting_992442 | chr22_39137487_- | 0.600321645269033 | 0.029871712993014 | 0.182065140484856 | -0.0759875072546047 | 2.67659705125929e-08 | 0.309333831595934 |
| CER | ADediting_992442 | chr22_39137487_- | 0.016682020416801 | 0.195189220236553 | 1.96295467148043e-05 | 0.34091900014731 | 0.00557744671080013 | 0.22527166199359 |
| TCX | ADediting_992442 | chr22_39137487_- | 0.678552594940127 | 0.0341143360356582 | 0.0647011889782042 | -0.15122921030216 | 7.25857713338914e-07 | 0.391525417368546 |
| CER | ADediting_992444 | chr22_39137513_- | 0.00774309361981862 | 0.216662286657508 | 4.35152201753099e-05 | 0.32728004502347 | 0.0335389749980454 | 0.173683820840367 |
| CER | ADediting_992453 | chr22_39137566_- | 0.00044542156056406 | 0.283197156952584 | 6.16321911681408e-07 | 0.393827180954929 | 0.024271903309094 | 0.183906833262762 |
| CER | ADediting_992454 | chr22_39137568_- | 8.97368144742475e-05 | 0.314291086679454 | 4.04298644747701e-07 | 0.399680698268968 | 0.0638461122447066 | 0.151709510182518 |
| CER | ADediting_992456 | chr22_39137576_- | 0.000104858154481608 | 0.311416863261825 | 2.93532057092389e-07 | 0.404051985679103 | 0.0174025559494665 | 0.193945316925147 |
| CER | ADediting_992458 | chr22_39137615_- | 3.59597008475563e-09 | 0.458604839679256 | 1.13349319276515e-13 | 0.558379771653848 | 0.0233849505617805 | 0.185053129522304 |
| DLPFC | ADediting_992459 | chr22_39137621_- | 0.00194947507038036 | 0.175288469755233 | 0.245085180312202 | 0.0662131971889958 | 2.42191904357464e-08 | 0.310254647513476 |
| CER | ADediting_992459 | chr22_39137621_- | 0.000359224227086892 | 0.287581454988548 | 1.68280780751078e-05 | 0.343484833911846 | 0.000587916302611793 | 0.277431526891835 |
| CER | ADediting_992460 | chr22_39137622_- | 9.67086028491436e-05 | 0.31291378649593 | 0.000931214684489991 | 0.267594899894536 | 0.123276506716519 | 0.126387767599663 |
| TCX | ADediting_992460 | chr22_39137622_- | 0.235575983089281 | 0.0974305236337381 | 0.938600815295132 | -0.00634235021161251 | 5.53354573714623e-05 | 0.32303281123898 |
| CER | ADediting_992461 | chr22_39137925_- | 7.00462397644195e-05 | 0.318803894852859 | 8.14039752879304e-06 | 0.355291647445151 | 0.0148124783247641 | 0.198649273017477 |
| CER | ADediting_992462 | chr22_39137937_- | 2.72263866495736e-05 | 0.335391575042876 | 0.000598048930447728 | 0.277072484228773 | 0.134332006959082 | 0.12281287728889 |
| DLPFC | ADediting_992465 | chr22_39138014_- | 0.0478571563692614 | 0.11247643217693 | 0.677612360574017 | -0.0237039469816572 | 1.07874791457877e-10 | 0.356003359430606 |
| CER | ADediting_992465 | chr22_39138014_- | 0.00249148053034944 | 0.245209049823891 | 9.47364585286667e-08 | 0.419011775527733 | 0.00119674844777572 | 0.262070086745346 |
| CER | ADediting_992466 | chr22_39138017_- | 0.000920934901471931 | 0.267836685492635 | 3.25121308846755e-07 | 0.402663253244906 | 0.00337902595708178 | 0.237858283549694 |
| CER | ADediting_992467 | chr22_39138059_- | 0.00196869546234045 | 0.250746626324035 | 6.98803686497055e-08 | 0.422916193244217 | 0.0186597411225582 | 0.191878192767409 |
| CER | ADediting_992468 | chr22_39138069_- | 0.000440028338101818 | 0.283447396141592 | 6.8805189366013e-09 | 0.451142913687519 | 0.00352359607299403 | 0.236830440717811 |
| TCX | ADediting_992468 | chr22_39138069_- | 0.236006631500473 | -0.0973414196228786 | 0.342556758969908 | -0.0780302998105502 | 3.70873629091684e-05 | 0.330070607836342 |
| CER | ADediting_992470 | chr22_39138118_- | 0.00889899968946239 | 0.212914481837236 | 1.17218582509348e-05 | 0.349422933823328 | 0.211008465940088 | 0.102716075632272 |
| CER | ADediting_992477 | chr22_39139513_- | 0.00401474609796525 | 0.233601251961309 | 3.61532224198179e-05 | 0.330513498390876 | 0.0253894764910214 | 0.182512584984119 |
| DLPFC | ADediting_992488 | chr22_39141586_- | 0.762881881839027 | -0.017203555550043 | 0.172738628521134 | -0.0776358408303144 | 9.49068656252127e-09 | 0.318733079942398 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 5.50620173237212e-106 | 0.888091658245942 | 4.77561700486426e-106 | 0.888201467390428 | 8.7673437686847e-07 | 0.275000705595944 |
| AC | 3.32334861756494e-94 | 0.905315494573395 | 5.5802861697324e-86 | 0.888739511456566 | 3.42285121167887e-11 | 0.403227157167825 |
| PCC | 4.9294895880459e-67 | 0.891852114442815 | 4.69197233423253e-77 | 0.916341883853986 | 0.00102247447236594 | 0.235828536234287 |
| CER | 8.71680592718313e-28 | 0.744797522746445 | 8.32830853730661e-23 | 0.693238101228439 | 0.010207877371842 | 0.209158640062564 |
| TCX | 3.25514990045006e-39 | 0.82917059857928 | 7.76049001039607e-46 | 0.863468597556452 | 0.750611445649172 | -0.0261654159272492 |
| FP | 3.74417642838161e-21 | 0.630948469616023 | 2.91744370014819e-11 | 0.471982243136973 | 4.61451234435875e-11 | 0.467742983080413 |
| IFG | 2.88014524038238e-08 | 0.862850583095953 | 2.1861705557519e-09 | 0.891793483992207 | 0.161280831613254 | 0.288930419388877 |
| STG | 6.19308075084893e-25 | 0.853550963032927 | 3.82664855129414e-17 | 0.762017987575702 | 0.0268369484365642 | 0.241584111668993 |
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Relation with AD stages for CBX7 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| CER | ADediting_992468 | chr22_39138069_- | 0.000127706044181543 | 0.360351765352368 |
| CER | ADediting_1570713 | chr22_39137988_- | 0.000525376702377598 | 0.328185331297688 |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
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RelatedDrugs for CBX7 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CBX7 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
| CBX7 | C0026764 | Multiple Myeloma | 1 | CTD_human |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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