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![]() | Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for ATAD3C |
Gene summary |
| Gene information | Gene symbol | ATAD3C | Gene ID | 219293 |
| Gene name | ATPase family AAA domain containing 3C | |
| Synonyms | - | |
| Cytomap | 1p36.33 | |
| Type of gene | protein-coding | |
| Description | ATPase family AAA domain-containing protein 3CATPase family, AAA domain containing 3A | |
| Modification date | 20200313 | |
| UniProtAcc | Q5T2N8, | |
| Context |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for ATAD3C |
RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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RNA editing frequencies across three data sets. |
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The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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RNA A-to-I editing events in AD. |
| ADediting_13575(1450073, +), ADediting_13576(1450074, +), ADediting_13577(1450090, +), ADediting_13578(1450140, +), ADediting_13579(1450141, +), ADediting_13581(1450160, +), ADediting_13582(1450163, +), ADediting_13583(1450164, +), ADediting_13584(1450165, +), ADediting_13585(1450169, +), ADediting_13586(1450174, +), ADediting_13587(1450178, +), ADediting_13588(1450204, +), ADediting_13589(1450210, +), ADediting_13590(1450214, +), ADediting_13591(1450240, +), ADediting_13592(1450245, +), ADediting_13593(1450246, +), ADediting_13594(1450257, +), ADediting_13595(1450269, +), ADediting_13596(1450270, +), ADediting_14653(1458494, +), ADediting_15004(1464533, +), ADediting_15005(1464624, +), ADediting_15011(1464691, +), ADediting_15021(1465066, +), ADediting_15022(1465069, +), ADediting_15023(1465083, +), ADediting_15024(1465086, +), ADediting_15025(1465138, +), ADediting_15040(1465460, +), ADediting_15041(1465470, +), ADediting_15042(1465480, +), ADediting_15226(1469028, +), ADediting_15229(1469127, +), ADediting_15234(1469139, +), ADediting_15238(1469156, +), ADediting_15258(1469201, +), ADediting_15259(1469215, +), ADediting_15260(1469266, +), ADediting_15290(1469293, +), ADediting_15291(1469294, +), ADediting_15292(1469296, +), ADediting_15293(1469303, +), ADediting_15294(1469304, +), ADediting_15295(1469384, +), ADediting_15346(1469610, +), ADediting_15347(1469611, +), ADediting_15348(1469614, +), ADediting_15349(1469650, +), ADediting_15363(1469737, +), ADediting_1514317(1450280, +), ADediting_1514318(1450308, +), ADediting_1514394(1463990, +), ADediting_1514395(1464048, +), ADediting_1514396(1466139, +), |
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RNA editing positional annotations for ATAD3C using Annovar |
Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_13575 | chr1_1450073_+ | UTR5 |
| ADediting_13576 | chr1_1450074_+ | UTR5 |
| ADediting_13577 | chr1_1450090_+ | UTR5 |
| ADediting_13578 | chr1_1450140_+ | UTR5 |
| ADediting_13579 | chr1_1450141_+ | UTR5 |
| ADediting_13581 | chr1_1450160_+ | UTR5 |
| ADediting_13582 | chr1_1450163_+ | UTR5 |
| ADediting_13583 | chr1_1450164_+ | UTR5 |
| ADediting_13584 | chr1_1450165_+ | UTR5 |
| ADediting_13585 | chr1_1450169_+ | UTR5 |
| ADediting_13586 | chr1_1450174_+ | UTR5 |
| ADediting_13587 | chr1_1450178_+ | UTR5 |
| ADediting_13588 | chr1_1450204_+ | UTR5 |
| ADediting_13589 | chr1_1450210_+ | UTR5 |
| ADediting_13590 | chr1_1450214_+ | UTR5 |
| ADediting_13591 | chr1_1450240_+ | UTR5 |
| ADediting_13592 | chr1_1450245_+ | UTR5 |
| ADediting_13593 | chr1_1450246_+ | UTR5 |
| ADediting_13594 | chr1_1450257_+ | UTR5 |
| ADediting_13595 | chr1_1450269_+ | UTR5 |
| ADediting_13596 | chr1_1450270_+ | UTR5 |
| ADediting_14653 | chr1_1458494_+ | intronic |
| ADediting_15004 | chr1_1464533_+ | intronic |
| ADediting_15005 | chr1_1464624_+ | intronic |
| ADediting_15011 | chr1_1464691_+ | intronic |
| ADediting_15021 | chr1_1465066_+ | intronic |
| ADediting_15022 | chr1_1465069_+ | intronic |
| ADediting_15023 | chr1_1465083_+ | intronic |
| ADediting_15024 | chr1_1465086_+ | intronic |
| ADediting_15025 | chr1_1465138_+ | intronic |
| ADediting_15040 | chr1_1465460_+ | intronic |
| ADediting_15041 | chr1_1465470_+ | intronic |
| ADediting_15042 | chr1_1465480_+ | intronic |
| ADediting_15226 | chr1_1469028_+ | UTR3 |
| ADediting_15229 | chr1_1469127_+ | UTR3 |
| ADediting_15234 | chr1_1469139_+ | UTR3 |
| ADediting_15238 | chr1_1469156_+ | UTR3 |
| ADediting_15258 | chr1_1469201_+ | UTR3 |
| ADediting_15259 | chr1_1469215_+ | UTR3 |
| ADediting_15260 | chr1_1469266_+ | UTR3 |
| ADediting_15290 | chr1_1469293_+ | UTR3 |
| ADediting_15291 | chr1_1469294_+ | UTR3 |
| ADediting_15292 | chr1_1469296_+ | UTR3 |
| ADediting_15293 | chr1_1469303_+ | UTR3 |
| ADediting_15294 | chr1_1469304_+ | UTR3 |
| ADediting_15295 | chr1_1469384_+ | UTR3 |
| ADediting_15346 | chr1_1469610_+ | UTR3 |
| ADediting_15347 | chr1_1469611_+ | UTR3 |
| ADediting_15348 | chr1_1469614_+ | UTR3 |
| ADediting_15349 | chr1_1469650_+ | UTR3 |
| ADediting_15363 | chr1_1469737_+ | UTR3 |
| ADediting_1514317 | chr1_1450280_+ | UTR5 |
| ADediting_1514318 | chr1_1450308_+ | UTR5 |
| ADediting_1514394 | chr1_1463990_+ | intronic |
| ADediting_1514395 | chr1_1464048_+ | intronic |
| ADediting_1514396 | chr1_1466139_+ | intronic |
Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_13575 | chr1_1450073_+ | SINE | Alu | Name=AluY |
| ADediting_13576 | chr1_1450074_+ | SINE | Alu | Name=AluY |
| ADediting_13577 | chr1_1450090_+ | SINE | Alu | Name=AluY |
| ADediting_13578 | chr1_1450140_+ | SINE | Alu | Name=AluY |
| ADediting_13579 | chr1_1450141_+ | SINE | Alu | Name=AluY |
| ADediting_13581 | chr1_1450160_+ | SINE | Alu | Name=AluY |
| ADediting_13582 | chr1_1450163_+ | SINE | Alu | Name=AluY |
| ADediting_13583 | chr1_1450164_+ | SINE | Alu | Name=AluY |
| ADediting_13584 | chr1_1450165_+ | SINE | Alu | Name=AluY |
| ADediting_13585 | chr1_1450169_+ | SINE | Alu | Name=AluY |
| ADediting_13586 | chr1_1450174_+ | SINE | Alu | Name=AluY |
| ADediting_13587 | chr1_1450178_+ | SINE | Alu | Name=AluY |
| ADediting_13588 | chr1_1450204_+ | SINE | Alu | Name=AluY |
| ADediting_13589 | chr1_1450210_+ | SINE | Alu | Name=AluY |
| ADediting_13590 | chr1_1450214_+ | SINE | Alu | Name=AluY |
| ADediting_13591 | chr1_1450240_+ | SINE | Alu | Name=AluY |
| ADediting_13592 | chr1_1450245_+ | SINE | Alu | Name=AluY |
| ADediting_13593 | chr1_1450246_+ | SINE | Alu | Name=AluY |
| ADediting_13594 | chr1_1450257_+ | SINE | Alu | Name=AluY |
| ADediting_13595 | chr1_1450269_+ | SINE | Alu | Name=AluY |
| ADediting_13596 | chr1_1450270_+ | SINE | Alu | Name=AluY |
| ADediting_14653 | chr1_1458494_+ | SINE | Alu | Name=AluSp |
| ADediting_15004 | chr1_1464533_+ | SINE | Alu | Name=AluSq2 |
| ADediting_15005 | chr1_1464624_+ | SINE | Alu | Name=AluSq2 |
| ADediting_15011 | chr1_1464691_+ | SINE | Alu | Name=AluSq2 |
| ADediting_15021 | chr1_1465066_+ | SINE | Alu | Name=AluSx |
| ADediting_15022 | chr1_1465069_+ | SINE | Alu | Name=AluSx |
| ADediting_15023 | chr1_1465083_+ | SINE | Alu | Name=AluSx |
| ADediting_15024 | chr1_1465086_+ | SINE | Alu | Name=AluSx |
| ADediting_15025 | chr1_1465138_+ | SINE | Alu | Name=AluSx |
| ADediting_15040 | chr1_1465460_+ | SINE | Alu | Name=AluY |
| ADediting_15041 | chr1_1465470_+ | SINE | Alu | Name=AluY |
| ADediting_15042 | chr1_1465480_+ | SINE | Alu | Name=AluY |
| ADediting_15226 | chr1_1469028_+ | SINE | Alu | Name=AluSq2 |
| ADediting_15229 | chr1_1469127_+ | SINE | Alu | Name=AluSq2 |
| ADediting_15234 | chr1_1469139_+ | SINE | Alu | Name=AluSq2 |
| ADediting_15238 | chr1_1469156_+ | SINE | Alu | Name=AluSq2 |
| ADediting_15258 | chr1_1469201_+ | SINE | Alu | Name=AluSq2 |
| ADediting_15259 | chr1_1469215_+ | SINE | Alu | Name=AluSq2 |
| ADediting_15260 | chr1_1469266_+ | SINE | Alu | Name=AluSq2 |
| ADediting_15290 | chr1_1469293_+ | SINE | Alu | Name=AluSq2 |
| ADediting_15291 | chr1_1469294_+ | SINE | Alu | Name=AluSq2 |
| ADediting_15292 | chr1_1469296_+ | SINE | Alu | Name=AluSq2 |
| ADediting_15293 | chr1_1469303_+ | SINE | Alu | Name=AluSq2 |
| ADediting_15294 | chr1_1469304_+ | SINE | Alu | Name=AluSq2 |
| ADediting_15295 | chr1_1469384_+ | SINE | Alu | Name=AluSc8 |
| ADediting_15346 | chr1_1469610_+ | SINE | Alu | Name=AluJo |
| ADediting_15347 | chr1_1469611_+ | SINE | Alu | Name=AluJo |
| ADediting_15348 | chr1_1469614_+ | SINE | Alu | Name=AluJo |
| ADediting_15349 | chr1_1469650_+ | SINE | Alu | Name=AluJo |
| ADediting_15363 | chr1_1469737_+ | SINE | Alu | Name=AluSx |
| ADediting_1514317 | chr1_1450280_+ | SINE | Alu | Name=AluY |
| ADediting_1514318 | chr1_1450308_+ | SINE | Alu | Name=AluY |
| ADediting_1514394 | chr1_1463990_+ | SINE | Alu | Name=AluSz |
| ADediting_1514395 | chr1_1464048_+ | SINE | Alu | Name=AluSz |
| ADediting_1514396 | chr1_1466139_+ | SINE | Alu | Name=AluSp |
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RNA A-to-I editing events in the alternative splicing sites for ATAD3C |
RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ATAD3C |
Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.* The grey color means N/A. |
Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.* Click on the image to enlarge it in a new window. |
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- Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.* Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for ATAD3C |
- Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for ATAD3C |
RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_15238 | chr1_1469156_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-4722-3p | chr1 | 1469150 | 1469156 | 7mer-m8 | 1469136 | 1469157 | 156 | -24.98 |
| ADediting_15238 | chr1_1469156_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-6727-3p | chr1 | 1469150 | 1469156 | 7mer-m8 | 1469138 | 1469157 | 161 | -26.4 |
| ADediting_15238 | chr1_1469156_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-6804-3p | chr1 | 1469153 | 1469159 | 7mer-m8 | 1469140 | 1469160 | 158 | -23.37 |
| ADediting_15259 | chr1_1469215_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-1306-5p | chr1 | 1469211 | 1469217 | 7mer-m8 | 1469197 | 1469218 | 155 | -24.21 |
| ADediting_15293 | chr1_1469303_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-130a-5p | chr1 | 1469298 | 1469304 | 7mer-m8 | 1469284 | 1469305 | 140 | -6.52 |
| ADediting_15294 | chr1_1469304_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-6832-3p | chr1 | 1469299 | 1469305 | 7mer-m8 | 1469287 | 1469306 | 159 | -9.85 |
| ADediting_15295 | chr1_1469384_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-1281 | chr1 | 1469377 | 1469383 | 7mer-m8 | 1469368 | 1469384 | 147 | -20.26 |
| ADediting_15347 | chr1_1469611_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-1199-5p | chr1 | 1469604 | 1469610 | 7mer-m8 | 1469592 | 1469611 | 156 | -28.57 |
| ADediting_15347 | chr1_1469611_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-6751-3p | chr1 | 1469604 | 1469610 | 7mer-m8 | 1469591 | 1469611 | 141 | -13.15 |
| ADediting_15363 | chr1_1469737_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-4786-5p | chr1 | 1469734 | 1469740 | 7mer-m8 | 1469718 | 1469741 | 150 | -22.64 |
RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_15226 | chr1_1469028_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-212-5p | chr1 | 1469024 | 1469031 | 8mer-1a | 1469011 | 1469031 | 149 | -18.61 |
| ADediting_15226 | chr1_1469028_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-6878-3p | chr1 | 1469021 | 1469028 | 8mer-1a | 1469008 | 1469028 | 140 | -14.39 |
| ADediting_15234 | chr1_1469139_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-4735-5p | chr1 | 1469133 | 1469139 | 7mer-m8 | 1469119 | 1469140 | 140 | -4.28 |
| ADediting_15258 | chr1_1469201_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-8062 | chr1 | 1469196 | 1469202 | 7mer-m8 | 1469183 | 1469203 | 141 | -10.43 |
| ADediting_15259 | chr1_1469215_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-4436b-5p | chr1 | 1469213 | 1469219 | 7mer-m8 | 1469200 | 1469220 | 148 | -16.92 |
| ADediting_15260 | chr1_1469266_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-744-3p | chr1 | 1469261 | 1469268 | 8mer-1a | 1469247 | 1469268 | 140 | -10.72 |
| ADediting_15294 | chr1_1469304_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-6832-3p | chr1 | 1469300 | 1469306 | 7mer-m8 | 1469288 | 1469307 | 159 | -9.6 |
| ADediting_15294 | chr1_1469304_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-6851-3p | chr1 | 1469302 | 1469309 | 8mer-1a | 1469289 | 1469309 | 147 | -15.93 |
| ADediting_15295 | chr1_1469384_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-6836-3p | chr1 | 1469377 | 1469383 | 7mer-m8 | 1469364 | 1469384 | 147 | -20.83 |
RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1471004 | chr9_63819627_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-4477b | chr1 | 1470033 | 1470039 | 7mer-m8 | 1470021 | 1470040 | 156 | -17.93 |
| ADediting_1596844 | chr1_162342605_+ | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-556-3p | chr1 | 1469693 | 1469699 | 7mer-m8 | 1469679 | 1469700 | 145 | -10 |
| ADediting_286380 | chr11_79422188_- | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-5579-3p | chr1 | 1469790 | 1469796 | 7mer-m8 | 1469775 | 1469797 | 145 | -18.31 |
| ADediting_291761 | chr11_93733708_- | ENSG00000215915.10 | ENST00000378785.7 | ATAD3C-201 | hsa-miR-1304-3p | chr1 | 1469017 | 1469023 | 7mer-m8 | 1469004 | 1469024 | 147 | -19.77 |
RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for ATAD3C |
- RNA A-to-I editing in mRNA.* Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000378785.7 | protein_coding | ![]() | ![]() |
RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_13575 | ENST00000378785.7 | chr1_1450073_+ | 385 | -1623.05 | -1622.85 | -1675.85 |
| ADediting_13576 | ENST00000378785.7 | chr1_1450074_+ | 386 | -1622.85 | -1622.85 | -1675.85 |
| ADediting_13577 | ENST00000378785.7 | chr1_1450090_+ | 402 | -1624.85 | -1622.85 | -1675.85 |
| ADediting_13578 | ENST00000378785.7 | chr1_1450140_+ | 452 | -1622.95 | -1622.85 | -1675.85 |
| ADediting_13579 | ENST00000378785.7 | chr1_1450141_+ | 453 | -1622.55 | -1622.85 | -1675.85 |
| ADediting_13581 | ENST00000378785.7 | chr1_1450160_+ | 472 | -1622.85 | -1622.85 | -1675.85 |
| ADediting_13582 | ENST00000378785.7 | chr1_1450163_+ | 475 | -1623.55 | -1622.85 | -1675.85 |
| ADediting_13583 | ENST00000378785.7 | chr1_1450164_+ | 476 | -1623.25 | -1622.85 | -1675.85 |
| ADediting_13584 | ENST00000378785.7 | chr1_1450165_+ | 477 | -1623.85 | -1622.85 | -1675.85 |
| ADediting_13585 | ENST00000378785.7 | chr1_1450169_+ | 481 | -1622.85 | -1622.85 | -1675.85 |
| ADediting_13586 | ENST00000378785.7 | chr1_1450174_+ | 486 | -1622.95 | -1622.85 | -1675.85 |
| ADediting_13587 | ENST00000378785.7 | chr1_1450178_+ | 490 | -1622.55 | -1622.85 | -1675.85 |
| ADediting_13588 | ENST00000378785.7 | chr1_1450204_+ | 516 | -1622.55 | -1622.85 | -1675.85 |
| ADediting_13589 | ENST00000378785.7 | chr1_1450210_+ | 522 | -1624.75 | -1622.85 | -1675.85 |
| ADediting_13590 | ENST00000378785.7 | chr1_1450214_+ | 526 | -1622.85 | -1622.85 | -1675.85 |
| ADediting_13591 | ENST00000378785.7 | chr1_1450240_+ | 552 | -1623.75 | -1622.85 | -1675.85 |
| ADediting_13592 | ENST00000378785.7 | chr1_1450245_+ | 557 | -1626.15 | -1622.85 | -1675.85 |
| ADediting_13593 | ENST00000378785.7 | chr1_1450246_+ | 558 | -1622.55 | -1622.85 | -1675.85 |
| ADediting_13594 | ENST00000378785.7 | chr1_1450257_+ | 569 | -1629.45 | -1622.85 | -1675.85 |
| ADediting_13595 | ENST00000378785.7 | chr1_1450269_+ | 581 | -1629.25 | -1622.85 | -1675.85 |
| ADediting_13596 | ENST00000378785.7 | chr1_1450270_+ | 582 | -1622.85 | -1622.85 | -1675.85 |
| ADediting_1514317 | ENST00000378785.7 | chr1_1450280_+ | 592 | -1619.45 | -1622.85 | -1675.85 |
| ADediting_1514318 | ENST00000378785.7 | chr1_1450308_+ | 620 | -1628.85 | -1622.85 | -1675.85 |
| ADediting_15226 | ENST00000378785.7 | chr1_1469028_+ | 2729 | -1622.95 | -1622.85 | -1675.85 |
| ADediting_15229 | ENST00000378785.7 | chr1_1469127_+ | 2828 | -1622.85 | -1622.85 | -1675.85 |
| ADediting_15234 | ENST00000378785.7 | chr1_1469139_+ | 2840 | -1623.85 | -1622.85 | -1675.85 |
| ADediting_15238 | ENST00000378785.7 | chr1_1469156_+ | 2857 | -1622.85 | -1622.85 | -1675.85 |
| ADediting_15258 | ENST00000378785.7 | chr1_1469201_+ | 2902 | -1626.45 | -1622.85 | -1675.85 |
| ADediting_15259 | ENST00000378785.7 | chr1_1469215_+ | 2916 | -1625.85 | -1622.85 | -1675.85 |
| ADediting_15260 | ENST00000378785.7 | chr1_1469266_+ | 2967 | -1622.85 | -1622.85 | -1675.85 |
| ADediting_15290 | ENST00000378785.7 | chr1_1469293_+ | 2994 | -1622.85 | -1622.85 | -1675.85 |
| ADediting_15291 | ENST00000378785.7 | chr1_1469294_+ | 2995 | -1622.85 | -1622.85 | -1675.85 |
| ADediting_15292 | ENST00000378785.7 | chr1_1469296_+ | 2997 | -1622.85 | -1622.85 | -1675.85 |
| ADediting_15293 | ENST00000378785.7 | chr1_1469303_+ | 3004 | -1627.45 | -1622.85 | -1675.85 |
| ADediting_15294 | ENST00000378785.7 | chr1_1469304_+ | 3005 | -1625.05 | -1622.85 | -1675.85 |
| ADediting_15295 | ENST00000378785.7 | chr1_1469384_+ | 3085 | -1624.75 | -1622.85 | -1675.85 |
| ADediting_15346 | ENST00000378785.7 | chr1_1469610_+ | 3311 | -1622.55 | -1622.85 | -1675.85 |
| ADediting_15347 | ENST00000378785.7 | chr1_1469611_+ | 3312 | -1623.75 | -1622.85 | -1675.85 |
| ADediting_15348 | ENST00000378785.7 | chr1_1469614_+ | 3315 | -1627.05 | -1622.85 | -1675.85 |
| ADediting_15349 | ENST00000378785.7 | chr1_1469650_+ | 3351 | -1624.85 | -1622.85 | -1675.85 |
| ADediting_15363 | ENST00000378785.7 | chr1_1469737_+ | 3438 | -1622.25 | -1622.85 | -1675.85 |
RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for ATAD3C |
Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | ADediting_13587 | chr1_1450178_+ | 0.329128450400993 | 0.055607485872162 | 0.247293249009894 | -0.0659050584993496 | 2.46667912153073e-15 | 0.429331644233996 |
Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 0.000107388906462231 | 0.218211169144724 | 9.57009028001669e-06 | 0.248467720639097 | 2.6238167005642e-15 | 0.428955688081543 |
| AC | 7.60949027148032e-26 | 0.600079164089889 | 3.9942537585405e-15 | 0.469732282952709 | 4.08716740008535e-21 | 0.549393253997466 |
| PCC | 1.93457519949322e-06 | 0.336540604449977 | 5.44077144668789e-05 | 0.287712835083399 | 0.00204992876448242 | 0.22174280957849 |
| CER | 0.000130017760298014 | 0.307398568919266 | 3.21623435504239e-05 | 0.332535579542583 | 6.23714243315617e-05 | 0.32089350802011 |
| TCX | 0.728935565733215 | -0.0285279092793947 | 6.53258776674203e-06 | -0.358777665161422 | 5.42474399701371e-16 | 0.599274936616471 |
| FP | 0.000137772367360651 | 0.281900701711744 | 0.000201353990272341 | 0.275164849786746 | 2.38933696011376e-08 | 0.403264820908624 |
| IFG | 0.0174136462252645 | 0.471243394120847 | 0.0345172705285157 | 0.424307457231032 | 0.000366307659458404 | 0.656374668847756 |
| PG | 0.553932157140221 | -0.0436723096994138 | 0.541047419048624 | 0.0450987604480549 | 2.44420956005295e-05 | 0.304107176378957 |
| STG | 0.0283667661482442 | 0.239285187588776 | 0.383670712686956 | 0.0962720511655511 | 1.33211238638825e-05 | 0.455601507361456 |
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Relation with AD stages for ATAD3C |
Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
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RelatedDrugs for ATAD3C |
Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ATAD3C |
Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |