|
||||||
|
 | |
| |
| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
| |
| |
| The effects of the RNA editing to the stability of the RNA structures |
| |
| |
| |
|
Gene summary for CC2D1B |
 Gene summary |
| Gene information | Gene symbol | CC2D1B | Gene ID | 200014 |
| Gene name | coiled-coil and C2 domain containing 1B | |
| Synonyms | - | |
| Cytomap | 1p32.3 | |
| Type of gene | protein-coding | |
| Description | coiled-coil and C2 domain-containing protein 1BFRE under dual repression-binding protein 2five prime repressor element under dual repression-binding protein 2freud-2 | |
| Modification date | 20200313 | |
| UniProtAcc | Q5T0F9, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for CC2D1B |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_125770(52349986, -), ADediting_125771(52350015, -), ADediting_125772(52350016, -), ADediting_125773(52350021, -), ADediting_125774(52350024, -), ADediting_125775(52350034, -), ADediting_125776(52350056, -), ADediting_125777(52350083, -), ADediting_125778(52350095, -), ADediting_125779(52350166, -), ADediting_125780(52350779, -), ADediting_125781(52350806, -), ADediting_125782(52350831, -), ADediting_125783(52350834, -), ADediting_125784(52350838, -), ADediting_125785(52350843, -), ADediting_125786(52350851, -), ADediting_125787(52350871, -), ADediting_125788(52350874, -), ADediting_125789(52350878, -), ADediting_125790(52350883, -), ADediting_125791(52350884, -), ADediting_125792(52350910, -), ADediting_125793(52350919, -), ADediting_125794(52350920, -), ADediting_125795(52350923, -), ADediting_125796(52350924, -), ADediting_125797(52350925, -), ADediting_125798(52350926, -), ADediting_125799(52350929, -), ADediting_125800(52350940, -), ADediting_125801(52350942, -), ADediting_125802(52350950, -), ADediting_125803(52350951, -), ADediting_125804(52350960, -), ADediting_125805(52350965, -), ADediting_125806(52350966, -), ADediting_125807(52350970, -), ADediting_125808(52350974, -), ADediting_125809(52350993, -), ADediting_125810(52351002, -), ADediting_125811(52351003, -), ADediting_125812(52351019, -), ADediting_125813(52351020, -), ADediting_125814(52351028, -), ADediting_125815(52351036, -), ADediting_125816(52351629, -), ADediting_125817(52351641, -), ADediting_125818(52351642, -), ADediting_125819(52351651, -), ADediting_125820(52351656, -), ADediting_125821(52351660, -), ADediting_125822(52351692, -), ADediting_125823(52351701, -), ADediting_125824(52351704, -), ADediting_125825(52351718, -), ADediting_125826(52351721, -), ADediting_125827(52351727, -), ADediting_125828(52351735, -), ADediting_125829(52351736, -), ADediting_125830(52351756, -), ADediting_125831(52351760, -), ADediting_125832(52351762, -), ADediting_125833(52351772, -), ADediting_125834(52351775, -), ADediting_125835(52351784, -), ADediting_125836(52351801, -), ADediting_125837(52351808, -), ADediting_125838(52351815, -), ADediting_125839(52351821, -), ADediting_125840(52351822, -), ADediting_125841(52351832, -), ADediting_125842(52351837, -), ADediting_125843(52351862, -), ADediting_125844(52351873, -), ADediting_125845(52351878, -), ADediting_125846(52351882, -), ADediting_125847(52363151, -), ADediting_125848(52363205, -), ADediting_125849(52363295, -), ADediting_125850(52363348, -), ADediting_1520481(52347413, -), ADediting_1520482(52347485, -), ADediting_1520483(52347517, -), ADediting_1520484(52349995, -), ADediting_1520485(52350096, -), ADediting_1520486(52350187, -), ADediting_1520487(52350188, -), ADediting_1520488(52350210, -), ADediting_1520489(52350918, -), ADediting_1520490(52350941, -), ADediting_1520491(52350948, -), ADediting_1520492(52351679, -), ADediting_1520493(52351740, -), ADediting_1520494(52351752, -), ADediting_1520495(52351880, -), |
Top |
RNA editing positional annotations for CC2D1B using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_125770 | chr1_52349986_- | downstream |
| ADediting_125771 | chr1_52350015_- | downstream |
| ADediting_125772 | chr1_52350016_- | downstream |
| ADediting_125773 | chr1_52350021_- | downstream |
| ADediting_125774 | chr1_52350024_- | downstream |
| ADediting_125775 | chr1_52350034_- | downstream |
| ADediting_125776 | chr1_52350056_- | downstream |
| ADediting_125777 | chr1_52350083_- | downstream |
| ADediting_125778 | chr1_52350095_- | downstream |
| ADediting_125779 | chr1_52350166_- | downstream |
| ADediting_125780 | chr1_52350779_- | UTR3 |
| ADediting_125781 | chr1_52350806_- | UTR3 |
| ADediting_125782 | chr1_52350831_- | UTR3 |
| ADediting_125783 | chr1_52350834_- | UTR3 |
| ADediting_125784 | chr1_52350838_- | UTR3 |
| ADediting_125785 | chr1_52350843_- | UTR3 |
| ADediting_125786 | chr1_52350851_- | UTR3 |
| ADediting_125787 | chr1_52350871_- | UTR3 |
| ADediting_125788 | chr1_52350874_- | UTR3 |
| ADediting_125789 | chr1_52350878_- | UTR3 |
| ADediting_125790 | chr1_52350883_- | UTR3 |
| ADediting_125791 | chr1_52350884_- | UTR3 |
| ADediting_125792 | chr1_52350910_- | UTR3 |
| ADediting_125793 | chr1_52350919_- | UTR3 |
| ADediting_125794 | chr1_52350920_- | UTR3 |
| ADediting_125795 | chr1_52350923_- | UTR3 |
| ADediting_125796 | chr1_52350924_- | UTR3 |
| ADediting_125797 | chr1_52350925_- | UTR3 |
| ADediting_125798 | chr1_52350926_- | UTR3 |
| ADediting_125799 | chr1_52350929_- | UTR3 |
| ADediting_125800 | chr1_52350940_- | UTR3 |
| ADediting_125801 | chr1_52350942_- | UTR3 |
| ADediting_125802 | chr1_52350950_- | UTR3 |
| ADediting_125803 | chr1_52350951_- | UTR3 |
| ADediting_125804 | chr1_52350960_- | UTR3 |
| ADediting_125805 | chr1_52350965_- | UTR3 |
| ADediting_125806 | chr1_52350966_- | UTR3 |
| ADediting_125807 | chr1_52350970_- | UTR3 |
| ADediting_125808 | chr1_52350974_- | UTR3 |
| ADediting_125809 | chr1_52350993_- | UTR3 |
| ADediting_125810 | chr1_52351002_- | UTR3 |
| ADediting_125811 | chr1_52351003_- | UTR3 |
| ADediting_125812 | chr1_52351019_- | UTR3 |
| ADediting_125813 | chr1_52351020_- | UTR3 |
| ADediting_125814 | chr1_52351028_- | UTR3 |
| ADediting_125815 | chr1_52351036_- | UTR3 |
| ADediting_125816 | chr1_52351629_- | UTR3 |
| ADediting_125817 | chr1_52351641_- | UTR3 |
| ADediting_125818 | chr1_52351642_- | UTR3 |
| ADediting_125819 | chr1_52351651_- | UTR3 |
| ADediting_125820 | chr1_52351656_- | UTR3 |
| ADediting_125821 | chr1_52351660_- | UTR3 |
| ADediting_125822 | chr1_52351692_- | UTR3 |
| ADediting_125823 | chr1_52351701_- | UTR3 |
| ADediting_125824 | chr1_52351704_- | UTR3 |
| ADediting_125825 | chr1_52351718_- | UTR3 |
| ADediting_125826 | chr1_52351721_- | UTR3 |
| ADediting_125827 | chr1_52351727_- | UTR3 |
| ADediting_125828 | chr1_52351735_- | UTR3 |
| ADediting_125829 | chr1_52351736_- | UTR3 |
| ADediting_125830 | chr1_52351756_- | UTR3 |
| ADediting_125831 | chr1_52351760_- | UTR3 |
| ADediting_125832 | chr1_52351762_- | UTR3 |
| ADediting_125833 | chr1_52351772_- | UTR3 |
| ADediting_125834 | chr1_52351775_- | UTR3 |
| ADediting_125835 | chr1_52351784_- | UTR3 |
| ADediting_125836 | chr1_52351801_- | UTR3 |
| ADediting_125837 | chr1_52351808_- | UTR3 |
| ADediting_125838 | chr1_52351815_- | UTR3 |
| ADediting_125839 | chr1_52351821_- | UTR3 |
| ADediting_125840 | chr1_52351822_- | UTR3 |
| ADediting_125841 | chr1_52351832_- | UTR3 |
| ADediting_125842 | chr1_52351837_- | UTR3 |
| ADediting_125843 | chr1_52351862_- | UTR3 |
| ADediting_125844 | chr1_52351873_- | UTR3 |
| ADediting_125845 | chr1_52351878_- | UTR3 |
| ADediting_125846 | chr1_52351882_- | UTR3 |
| ADediting_125847 | chr1_52363151_- | intronic |
| ADediting_125848 | chr1_52363205_- | intronic |
| ADediting_125849 | chr1_52363295_- | intronic |
| ADediting_125850 | chr1_52363348_- | intronic |
| ADediting_1520481 | chr1_52347413_- | downstream |
| ADediting_1520482 | chr1_52347485_- | downstream |
| ADediting_1520483 | chr1_52347517_- | downstream |
| ADediting_1520484 | chr1_52349995_- | downstream |
| ADediting_1520485 | chr1_52350096_- | downstream |
| ADediting_1520486 | chr1_52350187_- | downstream |
| ADediting_1520487 | chr1_52350188_- | downstream |
| ADediting_1520488 | chr1_52350210_- | downstream |
| ADediting_1520489 | chr1_52350918_- | UTR3 |
| ADediting_1520490 | chr1_52350941_- | UTR3 |
| ADediting_1520491 | chr1_52350948_- | UTR3 |
| ADediting_1520492 | chr1_52351679_- | UTR3 |
| ADediting_1520493 | chr1_52351740_- | UTR3 |
| ADediting_1520494 | chr1_52351752_- | UTR3 |
| ADediting_1520495 | chr1_52351880_- | UTR3 |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_125770 | chr1_52349986_- | SINE | Alu | Name=AluSp |
| ADediting_125771 | chr1_52350015_- | SINE | Alu | Name=AluSp |
| ADediting_125772 | chr1_52350016_- | SINE | Alu | Name=AluSp |
| ADediting_125773 | chr1_52350021_- | SINE | Alu | Name=AluSp |
| ADediting_125774 | chr1_52350024_- | SINE | Alu | Name=AluSp |
| ADediting_125775 | chr1_52350034_- | SINE | Alu | Name=AluSp |
| ADediting_125776 | chr1_52350056_- | SINE | Alu | Name=AluSp |
| ADediting_125777 | chr1_52350083_- | SINE | Alu | Name=AluSp |
| ADediting_125778 | chr1_52350095_- | SINE | Alu | Name=AluSp |
| ADediting_125779 | chr1_52350166_- | SINE | Alu | Name=AluSp |
| ADediting_125780 | chr1_52350779_- | SINE | Alu | Name=AluSx1 |
| ADediting_125781 | chr1_52350806_- | SINE | Alu | Name=AluSx1 |
| ADediting_125782 | chr1_52350831_- | SINE | Alu | Name=AluSx1 |
| ADediting_125783 | chr1_52350834_- | SINE | Alu | Name=AluSx1 |
| ADediting_125784 | chr1_52350838_- | SINE | Alu | Name=AluSx1 |
| ADediting_125785 | chr1_52350843_- | SINE | Alu | Name=AluSx1 |
| ADediting_125786 | chr1_52350851_- | SINE | Alu | Name=AluSx1 |
| ADediting_125787 | chr1_52350871_- | SINE | Alu | Name=AluSx1 |
| ADediting_125788 | chr1_52350874_- | SINE | Alu | Name=AluSx1 |
| ADediting_125789 | chr1_52350878_- | SINE | Alu | Name=AluSx1 |
| ADediting_125790 | chr1_52350883_- | SINE | Alu | Name=AluSx1 |
| ADediting_125791 | chr1_52350884_- | SINE | Alu | Name=AluSx1 |
| ADediting_125792 | chr1_52350910_- | SINE | Alu | Name=AluSx1 |
| ADediting_125793 | chr1_52350919_- | SINE | Alu | Name=AluSx1 |
| ADediting_125794 | chr1_52350920_- | SINE | Alu | Name=AluSx1 |
| ADediting_125795 | chr1_52350923_- | SINE | Alu | Name=AluSx1 |
| ADediting_125796 | chr1_52350924_- | SINE | Alu | Name=AluSx1 |
| ADediting_125797 | chr1_52350925_- | SINE | Alu | Name=AluSx1 |
| ADediting_125798 | chr1_52350926_- | SINE | Alu | Name=AluSx1 |
| ADediting_125799 | chr1_52350929_- | SINE | Alu | Name=AluSx1 |
| ADediting_125800 | chr1_52350940_- | SINE | Alu | Name=AluSx1 |
| ADediting_125801 | chr1_52350942_- | SINE | Alu | Name=AluSx1 |
| ADediting_125802 | chr1_52350950_- | SINE | Alu | Name=AluSx1 |
| ADediting_125803 | chr1_52350951_- | SINE | Alu | Name=AluSx1 |
| ADediting_125804 | chr1_52350960_- | SINE | Alu | Name=AluSx1 |
| ADediting_125805 | chr1_52350965_- | SINE | Alu | Name=AluSx1 |
| ADediting_125806 | chr1_52350966_- | SINE | Alu | Name=AluSx1 |
| ADediting_125807 | chr1_52350970_- | SINE | Alu | Name=AluSx1 |
| ADediting_125808 | chr1_52350974_- | SINE | Alu | Name=AluSx1 |
| ADediting_125809 | chr1_52350993_- | SINE | Alu | Name=AluSx1 |
| ADediting_125810 | chr1_52351002_- | SINE | Alu | Name=AluSx1 |
| ADediting_125811 | chr1_52351003_- | SINE | Alu | Name=AluSx1 |
| ADediting_125812 | chr1_52351019_- | SINE | Alu | Name=AluSx1 |
| ADediting_125813 | chr1_52351020_- | SINE | Alu | Name=AluSx1 |
| ADediting_125814 | chr1_52351028_- | SINE | Alu | Name=AluSx1 |
| ADediting_125815 | chr1_52351036_- | SINE | Alu | Name=AluSx1 |
| ADediting_125816 | chr1_52351629_- | SINE | Alu | Name=AluSx1 |
| ADediting_125817 | chr1_52351641_- | SINE | Alu | Name=AluSx1 |
| ADediting_125818 | chr1_52351642_- | SINE | Alu | Name=AluSx1 |
| ADediting_125819 | chr1_52351651_- | SINE | Alu | Name=AluSx1 |
| ADediting_125820 | chr1_52351656_- | SINE | Alu | Name=AluSx1 |
| ADediting_125821 | chr1_52351660_- | SINE | Alu | Name=AluSx1 |
| ADediting_125822 | chr1_52351692_- | SINE | Alu | Name=AluSx1 |
| ADediting_125823 | chr1_52351701_- | SINE | Alu | Name=AluSx1 |
| ADediting_125824 | chr1_52351704_- | SINE | Alu | Name=AluSx1 |
| ADediting_125825 | chr1_52351718_- | SINE | Alu | Name=AluSx1 |
| ADediting_125826 | chr1_52351721_- | SINE | Alu | Name=AluSx1 |
| ADediting_125827 | chr1_52351727_- | SINE | Alu | Name=AluSx1 |
| ADediting_125828 | chr1_52351735_- | SINE | Alu | Name=AluSx1 |
| ADediting_125829 | chr1_52351736_- | SINE | Alu | Name=AluSx1 |
| ADediting_125830 | chr1_52351756_- | SINE | Alu | Name=AluSx1 |
| ADediting_125831 | chr1_52351760_- | SINE | Alu | Name=AluSx1 |
| ADediting_125832 | chr1_52351762_- | SINE | Alu | Name=AluSx1 |
| ADediting_125833 | chr1_52351772_- | SINE | Alu | Name=AluSx1 |
| ADediting_125834 | chr1_52351775_- | SINE | Alu | Name=AluSx1 |
| ADediting_125835 | chr1_52351784_- | SINE | Alu | Name=AluSx1 |
| ADediting_125836 | chr1_52351801_- | SINE | Alu | Name=AluSx1 |
| ADediting_125837 | chr1_52351808_- | SINE | Alu | Name=AluSx1 |
| ADediting_125838 | chr1_52351815_- | SINE | Alu | Name=AluSx1 |
| ADediting_125839 | chr1_52351821_- | SINE | Alu | Name=AluSx1 |
| ADediting_125840 | chr1_52351822_- | SINE | Alu | Name=AluSx1 |
| ADediting_125841 | chr1_52351832_- | SINE | Alu | Name=AluSx1 |
| ADediting_125842 | chr1_52351837_- | SINE | Alu | Name=AluSx1 |
| ADediting_125843 | chr1_52351862_- | SINE | Alu | Name=AluSx1 |
| ADediting_125844 | chr1_52351873_- | SINE | Alu | Name=AluSx1 |
| ADediting_125845 | chr1_52351878_- | SINE | Alu | Name=AluSx1 |
| ADediting_125846 | chr1_52351882_- | SINE | Alu | Name=AluSx1 |
| ADediting_125847 | chr1_52363151_- | SINE | Alu | Name=AluY |
| ADediting_125848 | chr1_52363205_- | SINE | Alu | Name=AluY |
| ADediting_125849 | chr1_52363295_- | SINE | Alu | Name=AluY |
| ADediting_125850 | chr1_52363348_- | SINE | Alu | Name=AluY |
| ADediting_1520481 | chr1_52347413_- | SINE | Alu | Name=AluSx1 |
| ADediting_1520482 | chr1_52347485_- | SINE | Alu | Name=AluSx1 |
| ADediting_1520483 | chr1_52347517_- | SINE | Alu | Name=AluSx1 |
| ADediting_1520484 | chr1_52349995_- | SINE | Alu | Name=AluSp |
| ADediting_1520485 | chr1_52350096_- | SINE | Alu | Name=AluSp |
| ADediting_1520486 | chr1_52350187_- | SINE | Alu | Name=AluSp |
| ADediting_1520487 | chr1_52350188_- | SINE | Alu | Name=AluSp |
| ADediting_1520488 | chr1_52350210_- | SINE | Alu | Name=AluSp |
| ADediting_1520489 | chr1_52350918_- | SINE | Alu | Name=AluSx1 |
| ADediting_1520490 | chr1_52350941_- | SINE | Alu | Name=AluSx1 |
| ADediting_1520491 | chr1_52350948_- | SINE | Alu | Name=AluSx1 |
| ADediting_1520492 | chr1_52351679_- | SINE | Alu | Name=AluSx1 |
| ADediting_1520493 | chr1_52351740_- | SINE | Alu | Name=AluSx1 |
| ADediting_1520494 | chr1_52351752_- | SINE | Alu | Name=AluSx1 |
| ADediting_1520495 | chr1_52351880_- | SINE | Alu | Name=AluSx1 |
Top |
RNA A-to-I editing events in the alternative splicing sites for CC2D1B |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for CC2D1B |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
 | |
| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
 |
| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
 |
 |
 |
 |
 |
 |
 |
 |
| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |