ADeditome Logo

Home

Download

Statistics

Landscape

Help

Contact

Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited versus non-edited samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with AD stages

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene


Gene summary for DIO2

check button Gene summary
Gene informationGene symbol

DIO2

Gene ID

1734

Gene nameiodothyronine deiodinase 2
Synonyms5DII|D2|DIOII|SelY|TXDI2
Cytomap

14q31.1

Type of geneprotein-coding
Descriptiontype II iodothyronine deiodinasedeiodinase, iodothyronine type IIdeiodinase-2deiodonase-2thyroxine deiodinase, type IItype 2 DItype 2 iodothyronine deiodinasetype-II 5'-deiodinasetype-II 5'deiodinase
Modification date20200313
UniProtAcc

Q92813,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
DIO2

GO:0042403

thyroid hormone metabolic process

19651899


Top

RNA A-to-I events for DIO2

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_455673(80197776, -),

Top

RNA editing positional annotations for DIO2 using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_455673chr14_80197776_-UTR3

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name

Top

RNA A-to-I editing events in the alternative splicing sites for DIO2

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for DIO2

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
boxplot
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
Soverview

check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Soverview
Soverview
ADeditome IDChrPositoingSkipped exonENSGENSTs

Top

Protein coding region RNA A-to-I editings for DIO2

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


Top

The effects of the RNA editing to the miRNA binding sites for DIO2

check buttonRNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
all structure

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_455673chr14_80197776_-ENSG00000211448.12ENST00000422005.7DIO2-201hsa-miR-6715a-3pchr1480197771801977777mer-m88019777080197789161-18.59
ADediting_455673chr14_80197776_-ENSG00000211448.12ENST00000438257.8DIO2-202hsa-miR-6715a-3pchr1480197771801977777mer-m88019777080197789161-18.59
ADediting_455673chr14_80197776_-ENSG00000211448.12ENST00000557010.5DIO2-210hsa-miR-6715a-3pchr1480197771801977777mer-m88019777080197789161-18.59

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_455673chr14_80197776_-ENSG00000211448.12ENST00000422005.7DIO2-201hsa-miR-3129-3pchr1480197773801977797mer-m88019777280197795154-11.76
ADediting_455673chr14_80197776_-ENSG00000211448.12ENST00000438257.8DIO2-202hsa-miR-3129-3pchr1480197773801977797mer-m88019777280197795154-11.76
ADediting_455673chr14_80197776_-ENSG00000211448.12ENST00000557010.5DIO2-210hsa-miR-3129-3pchr1480197773801977797mer-m88019777280197795154-11.76

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1471004chr9_63819627_+ENSG00000211448.12ENST00000422005.7DIO2-201hsa-miR-4477bchr1480198765801987728mer-1a8019876580198786142-8.45
ADediting_1471004chr9_63819627_+ENSG00000211448.12ENST00000422005.7DIO2-201hsa-miR-4477bchr1480199806801998127mer-m88019980580199826145-14.34
ADediting_1471004chr9_63819627_+ENSG00000211448.12ENST00000438257.8DIO2-202hsa-miR-4477bchr1480198765801987728mer-1a8019876580198786142-8.45
ADediting_1471004chr9_63819627_+ENSG00000211448.12ENST00000438257.8DIO2-202hsa-miR-4477bchr1480199806801998127mer-m88019980580199826145-14.34
ADediting_1471004chr9_63819627_+ENSG00000211448.12ENST00000557010.5DIO2-210hsa-miR-4477bchr1480198765801987728mer-1a8019876580198786142-8.45
ADediting_1471004chr9_63819627_+ENSG00000211448.12ENST00000557010.5DIO2-210hsa-miR-4477bchr1480199806801998127mer-m88019980580199826145-14.34
ADediting_1535951chr14_100874558_+ENSG00000211448.12ENST00000422005.7DIO2-201hsa-miR-337-3pchr1480199046801990527mer-m88019904580199068147-15.44
ADediting_1535951chr14_100874558_+ENSG00000211448.12ENST00000438257.8DIO2-202hsa-miR-337-3pchr1480199046801990527mer-m88019904580199068147-15.44
ADediting_1535951chr14_100874558_+ENSG00000211448.12ENST00000557010.5DIO2-210hsa-miR-337-3pchr1480199046801990527mer-m88019904580199068147-15.44
ADediting_1556067chr19_40282625_-ENSG00000211448.12ENST00000422005.7DIO2-201hsa-miR-641chr1480198832801988387mer-1a8019883280198855149-18.1
ADediting_1556067chr19_40282625_-ENSG00000211448.12ENST00000422005.7DIO2-201hsa-miR-641chr1480203242802032487mer-m88020324180203264142-13.37
ADediting_1556067chr19_40282625_-ENSG00000211448.12ENST00000438257.8DIO2-202hsa-miR-641chr1480198832801988387mer-1a8019883280198855149-18.1
ADediting_1556067chr19_40282625_-ENSG00000211448.12ENST00000556811.5DIO2-209hsa-miR-641chr1480203242802032487mer-m88020324180203264142-13.37
ADediting_1556067chr19_40282625_-ENSG00000211448.12ENST00000557010.5DIO2-210hsa-miR-641chr1480198832801988387mer-1a8019883280198855149-18.1
ADediting_1631458chr19_40282624_-ENSG00000211448.12ENST00000422005.7DIO2-201hsa-miR-641chr1480198605801986117mer-m88019860480198631150-16.27
ADediting_1631458chr19_40282624_-ENSG00000211448.12ENST00000438257.8DIO2-202hsa-miR-641chr1480198605801986117mer-m88019860480198631150-16.27
ADediting_1631458chr19_40282624_-ENSG00000211448.12ENST00000557010.5DIO2-210hsa-miR-641chr1480198605801986117mer-m88019860480198631150-16.27
ADediting_843620chr2_207754818_+ENSG00000211448.12ENST00000422005.7DIO2-201hsa-miR-4775chr1480200005802000128mer-1a8020000580200025150-12.73
ADediting_843620chr2_207754818_+ENSG00000211448.12ENST00000422005.7DIO2-201hsa-miR-4775chr1480200368802003747mer-m88020036780200387149-9.56
ADediting_843620chr2_207754818_+ENSG00000211448.12ENST00000422005.7DIO2-201hsa-miR-4775chr1480200652802006587mer-m88020065180200672143-10.69
ADediting_843620chr2_207754818_+ENSG00000211448.12ENST00000438257.8DIO2-202hsa-miR-4775chr1480200005802000128mer-1a8020000580200025150-12.73
ADediting_843620chr2_207754818_+ENSG00000211448.12ENST00000438257.8DIO2-202hsa-miR-4775chr1480200368802003747mer-m88020036780200387149-9.56
ADediting_843620chr2_207754818_+ENSG00000211448.12ENST00000438257.8DIO2-202hsa-miR-4775chr1480200652802006587mer-m88020065180200672143-10.69
ADediting_843620chr2_207754818_+ENSG00000211448.12ENST00000557010.5DIO2-210hsa-miR-4775chr1480200005802000128mer-1a8020000580200025150-12.73
ADediting_843620chr2_207754818_+ENSG00000211448.12ENST00000557010.5DIO2-210hsa-miR-4775chr1480200368802003747mer-m88020036780200387149-9.56
ADediting_843620chr2_207754818_+ENSG00000211448.12ENST00000557010.5DIO2-210hsa-miR-4775chr1480200652802006587mer-m88020065180200672143-10.69
ADediting_98288chr1_32086990_+ENSG00000211448.12ENST00000422005.7DIO2-201hsa-miR-5585-3pchr1480199676801996838mer-1a8019967680199698145-14.13
ADediting_98288chr1_32086990_+ENSG00000211448.12ENST00000422005.7DIO2-201hsa-miR-5585-3pchr1480202521802025288mer-1a8020252180202541148-13.48
ADediting_98288chr1_32086990_+ENSG00000211448.12ENST00000438257.8DIO2-202hsa-miR-5585-3pchr1480199676801996838mer-1a8019967680199698145-14.13
ADediting_98288chr1_32086990_+ENSG00000211448.12ENST00000438257.8DIO2-202hsa-miR-5585-3pchr1480202521802025288mer-1a8020252180202541148-13.48
ADediting_98288chr1_32086990_+ENSG00000211448.12ENST00000556811.5DIO2-209hsa-miR-5585-3pchr1480202521802025288mer-1a8020252180202541148-13.48
ADediting_98288chr1_32086990_+ENSG00000211448.12ENST00000557010.5DIO2-210hsa-miR-5585-3pchr1480199676801996838mer-1a8019967680199698145-14.13
ADediting_98288chr1_32086990_+ENSG00000211448.12ENST00000557010.5DIO2-210hsa-miR-5585-3pchr1480202521802025288mer-1a8020252180202541148-13.48
ADediting_98289chr1_32086992_+ENSG00000211448.12ENST00000422005.7DIO2-201hsa-miR-5585-3pchr1480201437802014437mer-m88020143680201460160-25.47
ADediting_98289chr1_32086992_+ENSG00000211448.12ENST00000438257.8DIO2-202hsa-miR-5585-3pchr1480201437802014437mer-m88020143680201460160-25.47
ADediting_98289chr1_32086992_+ENSG00000211448.12ENST00000557010.5DIO2-210hsa-miR-5585-3pchr1480201437802014437mer-m88020143680201460160-25.47

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_107020chr1_37500952_-ENSG00000211448.12ENST00000422005.7DIO2-201hsa-miR-5581-3pchr1480202864802028707mer-m88020286380202887146-14.1
ADediting_107020chr1_37500952_-ENSG00000211448.12ENST00000556811.5DIO2-209hsa-miR-5581-3pchr1480202864802028707mer-m88020286380202887146-14.1
ADediting_107020chr1_37500952_-ENSG00000211448.12ENST00000557125.1DIO2-211hsa-miR-5581-3pchr1480202864802028707mer-m88020286380202887146-14.1
ADediting_1556067chr19_40282625_-ENSG00000211448.12ENST00000422005.7DIO2-201hsa-miR-641chr1480199647801996537mer-m88019964680199669151-14.39
ADediting_1556067chr19_40282625_-ENSG00000211448.12ENST00000422005.7DIO2-201hsa-miR-641chr1480200133802001397mer-m88020013280200155150-12.35
ADediting_1556067chr19_40282625_-ENSG00000211448.12ENST00000438257.8DIO2-202hsa-miR-641chr1480199647801996537mer-m88019964680199669151-14.39
ADediting_1556067chr19_40282625_-ENSG00000211448.12ENST00000438257.8DIO2-202hsa-miR-641chr1480200133802001397mer-m88020013280200155150-12.35
ADediting_1556067chr19_40282625_-ENSG00000211448.12ENST00000557010.5DIO2-210hsa-miR-641chr1480199647801996537mer-m88019964680199669151-14.39
ADediting_1556067chr19_40282625_-ENSG00000211448.12ENST00000557010.5DIO2-210hsa-miR-641chr1480200133802001397mer-m88020013280200155150-12.35
ADediting_1631458chr19_40282624_-ENSG00000211448.12ENST00000422005.7DIO2-201hsa-miR-641chr1480199647801996537mer-m88019964680199669151-14.39
ADediting_1631458chr19_40282624_-ENSG00000211448.12ENST00000422005.7DIO2-201hsa-miR-641chr1480200133802001397mer-m88020013280200155150-12.35
ADediting_1631458chr19_40282624_-ENSG00000211448.12ENST00000438257.8DIO2-202hsa-miR-641chr1480199647801996537mer-m88019964680199669151-14.39
ADediting_1631458chr19_40282624_-ENSG00000211448.12ENST00000438257.8DIO2-202hsa-miR-641chr1480200133802001397mer-m88020013280200155150-12.35
ADediting_1631458chr19_40282624_-ENSG00000211448.12ENST00000557010.5DIO2-210hsa-miR-641chr1480199647801996537mer-m88019964680199669151-14.39
ADediting_1631458chr19_40282624_-ENSG00000211448.12ENST00000557010.5DIO2-210hsa-miR-641chr1480200133802001397mer-m88020013280200155150-12.35
ADediting_496066chr15_66496985_-ENSG00000211448.12ENST00000422005.7DIO2-201hsa-miR-4512chr1480198532801985387mer-m88019853180198552141-24.86
ADediting_496066chr15_66496985_-ENSG00000211448.12ENST00000438257.8DIO2-202hsa-miR-4512chr1480198532801985387mer-m88019853180198552141-24.86
ADediting_496066chr15_66496985_-ENSG00000211448.12ENST00000557010.5DIO2-210hsa-miR-4512chr1480198532801985387mer-m88019853180198552141-24.86

check button Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for DIO2

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000422005.7protein_codingSoverviewSoverview
ENST00000438257.8protein_codingSoverviewSoverview
ENST00000557010.5protein_codingSoverviewSoverview

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
ADediting_455673ENST00000422005.7chr14_80197776_-6023-1772.67-1766.07-1772.67
ADediting_455673ENST00000438257.8chr14_80197776_-5890-1748.67-1742.07-1748.67
ADediting_455673ENST00000557010.5chr14_80197776_-6121-1844.47-1837.87-1844.47

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

Top

Relation with ADAR for DIO2

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
AC1.21082655007848e-120.4294895684669255.33783647437069e-120.4181113264351913.86635333426443e-060.287352124919884
PCC3.01074127572852e-110.4570378555124154.08180089868039e-080.3842209488426640.2516317326283280.083352953381316
TCX0.6307969644876780.03955681420829860.3189219576762260.0819266883652642.03232653829783e-06-0.376622991705551
PG1.76611559697842e-090.4232011341411793.92039543694849e-070.3617205118966550.0564103297243635-0.14014409706595
STG0.0001815905930874420.3974286108283370.008448317444305760.2856175036321750.2942051932278590.115798424476311

Top

Relation with AD stages for DIO2

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.

Top

RelatedDrugs for DIO2

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for DIO2

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
DIO2C0005586Bipolar Disorder1PSYGENET
DIO2C0014175Endometriosis1CTD_human
DIO2C0025500Mesothelioma1CTD_human
DIO2C0040128Thyroid Diseases1CTD_human
DIO2C0269102Endometrioma1CTD_human
DIO2C1510586Autism Spectrum Disorders1CTD_human