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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for SPATA5 |
 Gene summary |
| Gene information | Gene symbol | SPATA5 | Gene ID | 166378 |
| Gene name | spermatogenesis associated 5 | |
| Synonyms | AFG2|EHLMRS|SPAF | |
| Cytomap | 4q28.1 | |
| Type of gene | protein-coding | |
| Description | ATPase family protein 2 homologATPase family gene 2 homologspermatogenesis associated factor SPAFspermatogenesis-associated factor proteinspermatogenesis-associated protein 5 | |
| Modification date | 20200320 | |
| UniProtAcc | Q8NB90, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for SPATA5 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_1104807(123046026, +), ADediting_1104808(123075013, +), ADediting_1104809(123075473, +), ADediting_1104810(123220054, +), ADediting_1104811(123220068, +), ADediting_1104812(123220130, +), ADediting_1104813(123220521, +), ADediting_1104814(123220532, +), ADediting_1104815(123221663, +), ADediting_1104816(123221669, +), ADediting_1104817(123221670, +), ADediting_1104818(123221829, +), ADediting_1104819(123314817, +), ADediting_1104820(123314856, +), ADediting_1104821(123314859, +), ADediting_1104822(123314874, +), ADediting_1104823(123314885, +), ADediting_1104824(123314895, +), ADediting_1104825(123314897, +), ADediting_1104826(123314936, +), ADediting_1104827(123314939, +), ADediting_1104828(123314946, +), ADediting_1104829(123314956, +), ADediting_1104830(123315003, +), ADediting_1104831(123315204, +), ADediting_1104832(123315232, +), ADediting_1104833(123315264, +), ADediting_1104834(123315292, +), ADediting_1104835(123315317, +), ADediting_1104836(123315327, +), ADediting_1104837(123315456, +), ADediting_1104838(123315829, +), ADediting_1104839(123315839, +), ADediting_1104840(123315908, +), ADediting_1104841(123315912, +), ADediting_1104842(123315917, +), ADediting_1104843(123315918, +), ADediting_1104844(123315920, +), ADediting_1104845(123315969, +), ADediting_1104846(123316032, +), ADediting_1104847(123316041, +), ADediting_1104848(123316042, +), ADediting_1104849(123316049, +), ADediting_1104850(123316054, +), ADediting_1104851(123316970, +), ADediting_1104852(123316971, +), ADediting_1104853(123316997, +), ADediting_1104854(123317022, +), ADediting_1104855(123317023, +), ADediting_1104856(123317042, +), ADediting_1104857(123317078, +), ADediting_1104858(123317104, +), ADediting_1104859(123317110, +), ADediting_1104860(123317114, +), ADediting_1104861(123317131, +), ADediting_1104862(123317170, +), ADediting_1104863(123318656, +), ADediting_1104864(123318692, +), ADediting_1104865(123318697, +), ADediting_1104866(123318747, +), ADediting_1104867(123318774, +), ADediting_1576232(123315018, +), ADediting_1576233(123315030, +), ADediting_1576234(123315841, +), ADediting_1576235(123315864, +), ADediting_1576236(123315865, +), ADediting_1576237(123318672, +), ADediting_1576238(123318699, +), ADediting_1576239(123318754, +), |
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RNA editing positional annotations for SPATA5 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1104807 | chr4_123046026_+ | intronic |
| ADediting_1104808 | chr4_123075013_+ | intronic |
| ADediting_1104809 | chr4_123075473_+ | intronic |
| ADediting_1104810 | chr4_123220054_+ | intronic |
| ADediting_1104811 | chr4_123220068_+ | intronic |
| ADediting_1104812 | chr4_123220130_+ | intronic |
| ADediting_1104813 | chr4_123220521_+ | intronic |
| ADediting_1104814 | chr4_123220532_+ | intronic |
| ADediting_1104815 | chr4_123221663_+ | intronic |
| ADediting_1104816 | chr4_123221669_+ | intronic |
| ADediting_1104817 | chr4_123221670_+ | intronic |
| ADediting_1104818 | chr4_123221829_+ | intronic |
| ADediting_1104819 | chr4_123314817_+ | UTR3 |
| ADediting_1104820 | chr4_123314856_+ | UTR3 |
| ADediting_1104821 | chr4_123314859_+ | UTR3 |
| ADediting_1104822 | chr4_123314874_+ | UTR3 |
| ADediting_1104823 | chr4_123314885_+ | UTR3 |
| ADediting_1104824 | chr4_123314895_+ | UTR3 |
| ADediting_1104825 | chr4_123314897_+ | UTR3 |
| ADediting_1104826 | chr4_123314936_+ | UTR3 |
| ADediting_1104827 | chr4_123314939_+ | UTR3 |
| ADediting_1104828 | chr4_123314946_+ | UTR3 |
| ADediting_1104829 | chr4_123314956_+ | UTR3 |
| ADediting_1104830 | chr4_123315003_+ | UTR3 |
| ADediting_1104831 | chr4_123315204_+ | UTR3 |
| ADediting_1104832 | chr4_123315232_+ | UTR3 |
| ADediting_1104833 | chr4_123315264_+ | UTR3 |
| ADediting_1104834 | chr4_123315292_+ | UTR3 |
| ADediting_1104835 | chr4_123315317_+ | UTR3 |
| ADediting_1104836 | chr4_123315327_+ | UTR3 |
| ADediting_1104837 | chr4_123315456_+ | UTR3 |
| ADediting_1104838 | chr4_123315829_+ | UTR3 |
| ADediting_1104839 | chr4_123315839_+ | UTR3 |
| ADediting_1104840 | chr4_123315908_+ | UTR3 |
| ADediting_1104841 | chr4_123315912_+ | UTR3 |
| ADediting_1104842 | chr4_123315917_+ | UTR3 |
| ADediting_1104843 | chr4_123315918_+ | UTR3 |
| ADediting_1104844 | chr4_123315920_+ | UTR3 |
| ADediting_1104845 | chr4_123315969_+ | UTR3 |
| ADediting_1104846 | chr4_123316032_+ | UTR3 |
| ADediting_1104847 | chr4_123316041_+ | UTR3 |
| ADediting_1104848 | chr4_123316042_+ | UTR3 |
| ADediting_1104849 | chr4_123316049_+ | UTR3 |
| ADediting_1104850 | chr4_123316054_+ | UTR3 |
| ADediting_1104851 | chr4_123316970_+ | UTR3 |
| ADediting_1104852 | chr4_123316971_+ | UTR3 |
| ADediting_1104853 | chr4_123316997_+ | UTR3 |
| ADediting_1104854 | chr4_123317022_+ | UTR3 |
| ADediting_1104855 | chr4_123317023_+ | UTR3 |
| ADediting_1104856 | chr4_123317042_+ | UTR3 |
| ADediting_1104857 | chr4_123317078_+ | UTR3 |
| ADediting_1104858 | chr4_123317104_+ | UTR3 |
| ADediting_1104859 | chr4_123317110_+ | UTR3 |
| ADediting_1104860 | chr4_123317114_+ | UTR3 |
| ADediting_1104861 | chr4_123317131_+ | UTR3 |
| ADediting_1104862 | chr4_123317170_+ | UTR3 |
| ADediting_1104863 | chr4_123318656_+ | UTR3 |
| ADediting_1104864 | chr4_123318692_+ | UTR3 |
| ADediting_1104865 | chr4_123318697_+ | UTR3 |
| ADediting_1104866 | chr4_123318747_+ | UTR3 |
| ADediting_1104867 | chr4_123318774_+ | UTR3 |
| ADediting_1576232 | chr4_123315018_+ | UTR3 |
| ADediting_1576233 | chr4_123315030_+ | UTR3 |
| ADediting_1576234 | chr4_123315841_+ | UTR3 |
| ADediting_1576235 | chr4_123315864_+ | UTR3 |
| ADediting_1576236 | chr4_123315865_+ | UTR3 |
| ADediting_1576237 | chr4_123318672_+ | UTR3 |
| ADediting_1576238 | chr4_123318699_+ | UTR3 |
| ADediting_1576239 | chr4_123318754_+ | UTR3 |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1104807 | chr4_123046026_+ | SINE | Alu | Name=AluSx |
| ADediting_1104808 | chr4_123075013_+ | SINE | Alu | Name=AluSg |
| ADediting_1104809 | chr4_123075473_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1104810 | chr4_123220054_+ | SINE | Alu | Name=AluSq4 |
| ADediting_1104811 | chr4_123220068_+ | SINE | Alu | Name=AluSq4 |
| ADediting_1104812 | chr4_123220130_+ | SINE | Alu | Name=AluSq4 |
| ADediting_1104813 | chr4_123220521_+ | SINE | Alu | Name=AluSx4 |
| ADediting_1104814 | chr4_123220532_+ | SINE | Alu | Name=AluSx4 |
| ADediting_1104815 | chr4_123221663_+ | SINE | Alu | Name=AluSq |
| ADediting_1104816 | chr4_123221669_+ | SINE | Alu | Name=AluSq |
| ADediting_1104817 | chr4_123221670_+ | SINE | Alu | Name=AluSq |
| ADediting_1104818 | chr4_123221829_+ | SINE | Alu | Name=AluSq |
| ADediting_1104819 | chr4_123314817_+ | SINE | Alu | Name=AluSx |
| ADediting_1104820 | chr4_123314856_+ | SINE | Alu | Name=AluSx |
| ADediting_1104821 | chr4_123314859_+ | SINE | Alu | Name=AluSx |
| ADediting_1104822 | chr4_123314874_+ | SINE | Alu | Name=AluSx |
| ADediting_1104823 | chr4_123314885_+ | SINE | Alu | Name=AluSx |
| ADediting_1104824 | chr4_123314895_+ | SINE | Alu | Name=AluSx |
| ADediting_1104825 | chr4_123314897_+ | SINE | Alu | Name=AluSx |
| ADediting_1104826 | chr4_123314936_+ | SINE | Alu | Name=AluSx |
| ADediting_1104827 | chr4_123314939_+ | SINE | Alu | Name=AluSx |
| ADediting_1104828 | chr4_123314946_+ | SINE | Alu | Name=AluSx |
| ADediting_1104829 | chr4_123314956_+ | SINE | Alu | Name=AluSx |
| ADediting_1104830 | chr4_123315003_+ | SINE | Alu | Name=AluSx |
| ADediting_1104831 | chr4_123315204_+ | SINE | Alu | Name=AluY |
| ADediting_1104832 | chr4_123315232_+ | SINE | Alu | Name=AluY |
| ADediting_1104833 | chr4_123315264_+ | SINE | Alu | Name=AluY |
| ADediting_1104834 | chr4_123315292_+ | SINE | Alu | Name=AluY |
| ADediting_1104835 | chr4_123315317_+ | SINE | Alu | Name=AluY |
| ADediting_1104836 | chr4_123315327_+ | SINE | Alu | Name=AluY |
| ADediting_1104837 | chr4_123315456_+ | SINE | Alu | Name=AluY |
| ADediting_1104838 | chr4_123315829_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1104839 | chr4_123315839_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1104840 | chr4_123315908_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1104841 | chr4_123315912_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1104842 | chr4_123315917_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1104843 | chr4_123315918_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1104844 | chr4_123315920_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1104845 | chr4_123315969_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1104846 | chr4_123316032_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1104847 | chr4_123316041_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1104848 | chr4_123316042_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1104849 | chr4_123316049_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1104850 | chr4_123316054_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1104851 | chr4_123316970_+ | SINE | Alu | Name=AluY |
| ADediting_1104852 | chr4_123316971_+ | SINE | Alu | Name=AluY |
| ADediting_1104853 | chr4_123316997_+ | SINE | Alu | Name=AluY |
| ADediting_1104854 | chr4_123317022_+ | SINE | Alu | Name=AluY |
| ADediting_1104855 | chr4_123317023_+ | SINE | Alu | Name=AluY |
| ADediting_1104856 | chr4_123317042_+ | SINE | Alu | Name=AluY |
| ADediting_1104857 | chr4_123317078_+ | SINE | Alu | Name=AluY |
| ADediting_1104858 | chr4_123317104_+ | SINE | Alu | Name=AluY |
| ADediting_1104859 | chr4_123317110_+ | SINE | Alu | Name=AluY |
| ADediting_1104860 | chr4_123317114_+ | SINE | Alu | Name=AluY |
| ADediting_1104861 | chr4_123317131_+ | SINE | Alu | Name=AluY |
| ADediting_1104862 | chr4_123317170_+ | SINE | Alu | Name=AluY |
| ADediting_1104863 | chr4_123318656_+ | SINE | Alu | Name=FLAM_A |
| ADediting_1104864 | chr4_123318692_+ | SINE | Alu | Name=FLAM_A |
| ADediting_1104865 | chr4_123318697_+ | SINE | Alu | Name=FLAM_A |
| ADediting_1104866 | chr4_123318747_+ | SINE | Alu | Name=FLAM_A |
| ADediting_1104867 | chr4_123318774_+ | SINE | Alu | Name=FLAM_A |
| ADediting_1576232 | chr4_123315018_+ | SINE | Alu | Name=AluSx |
| ADediting_1576233 | chr4_123315030_+ | SINE | Alu | Name=AluSx |
| ADediting_1576234 | chr4_123315841_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1576235 | chr4_123315864_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1576236 | chr4_123315865_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1576237 | chr4_123318672_+ | SINE | Alu | Name=FLAM_A |
| ADediting_1576238 | chr4_123318699_+ | SINE | Alu | Name=FLAM_A |
| ADediting_1576239 | chr4_123318754_+ | SINE | Alu | Name=FLAM_A |
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RNA A-to-I editing events in the alternative splicing sites for SPATA5 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SPATA5 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
 | |
| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
 |
| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for SPATA5 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for SPATA5 |
| RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1104820 | chr4_123314856_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-12113 | chr4 | 123314849 | 123314855 | 7mer-m8 | 123314832 | 123314856 | 150 | -20.24 |
| ADediting_1104820 | chr4_123314856_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4539 | chr4 | 123314849 | 123314855 | 7mer-m8 | 123314837 | 123314856 | 153 | -20.34 |
| ADediting_1104822 | chr4_123314874_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-3929 | chr4 | 123314870 | 123314876 | 7mer-m8 | 123314856 | 123314877 | 156 | -18.66 |
| ADediting_1104822 | chr4_123314874_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4478 | chr4 | 123314870 | 123314876 | 7mer-m8 | 123314862 | 123314877 | 149 | -25.05 |
| ADediting_1104822 | chr4_123314874_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4649-3p | chr4 | 123314867 | 123314873 | 7mer-m8 | 123314854 | 123314874 | 140 | -14.11 |
| ADediting_1104822 | chr4_123314874_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-485-5p | chr4 | 123314871 | 123314877 | 7mer-m8 | 123314857 | 123314878 | 157 | -19.9 |
| ADediting_1104822 | chr4_123314874_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6884-5p | chr4 | 123314871 | 123314877 | 7mer-m8 | 123314856 | 123314878 | 160 | -27.2 |
| ADediting_1104822 | chr4_123314874_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-7160-5p | chr4 | 123314868 | 123314874 | 7mer-m8 | 123314855 | 123314875 | 147 | -20.02 |
| ADediting_1104823 | chr4_123314885_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4691-3p | chr4 | 123314882 | 123314888 | 7mer-m8 | 123314868 | 123314889 | 146 | -22.65 |
| ADediting_1104824 | chr4_123314895_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-17-3p | chr4 | 123314891 | 123314897 | 7mer-m8 | 123314876 | 123314898 | 150 | -22.27 |
| ADediting_1104825 | chr4_123314897_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-100-5p | chr4 | 123314893 | 123314899 | 7mer-m8 | 123314880 | 123314900 | 160 | -22.54 |
| ADediting_1104825 | chr4_123314897_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-99a-5p | chr4 | 123314893 | 123314899 | 7mer-m8 | 123314880 | 123314900 | 160 | -21.42 |
| ADediting_1104825 | chr4_123314897_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-99b-5p | chr4 | 123314893 | 123314899 | 7mer-m8 | 123314879 | 123314900 | 152 | -26.22 |
| ADediting_1104828 | chr4_123314946_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-10a-5p | chr4 | 123314942 | 123314948 | 7mer-m8 | 123314927 | 123314949 | 145 | -13.67 |
| ADediting_1104828 | chr4_123314946_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-10b-5p | chr4 | 123314942 | 123314948 | 7mer-m8 | 123314927 | 123314949 | 140 | -13.42 |
| ADediting_1104828 | chr4_123314946_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-339-5p | chr4 | 123314941 | 123314947 | 7mer-m8 | 123314925 | 123314948 | 150 | -17.69 |
| ADediting_1104828 | chr4_123314946_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4421 | chr4 | 123314940 | 123314946 | 7mer-m8 | 123314926 | 123314947 | 154 | -16.06 |
| ADediting_1104828 | chr4_123314946_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-5699-3p | chr4 | 123314940 | 123314946 | 7mer-m8 | 123314926 | 123314947 | 153 | -17.34 |
| ADediting_1104828 | chr4_123314946_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6732-3p | chr4 | 123314943 | 123314949 | 7mer-m8 | 123314929 | 123314950 | 158 | -19.01 |
| ADediting_1104829 | chr4_123314956_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-433-5p | chr4 | 123314950 | 123314956 | 7mer-m8 | 123314934 | 123314957 | 162 | -26 |
| ADediting_1104830 | chr4_123315003_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-3937 | chr4 | 123315000 | 123315007 | 8mer-1a | 123314984 | 123315007 | 152 | -27.21 |
| ADediting_1104831 | chr4_123315204_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-340-3p | chr4 | 123315198 | 123315205 | 8mer-1a | 123315184 | 123315205 | 145 | -17.53 |
| ADediting_1104831 | chr4_123315204_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6827-3p | chr4 | 123315198 | 123315205 | 8mer-1a | 123315185 | 123315205 | 142 | -14.67 |
| ADediting_1104832 | chr4_123315232_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-508-5p | chr4 | 123315229 | 123315235 | 7mer-m8 | 123315212 | 123315236 | 156 | -25.92 |
| ADediting_1104832 | chr4_123315232_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6512-3p | chr4 | 123315227 | 123315233 | 7mer-m8 | 123315213 | 123315234 | 140 | -20.03 |
| ADediting_1104832 | chr4_123315232_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6720-5p | chr4 | 123315227 | 123315233 | 7mer-m8 | 123315213 | 123315234 | 152 | -27.21 |
| ADediting_1104832 | chr4_123315232_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6849-3p | chr4 | 123315226 | 123315233 | 8mer-1a | 123315213 | 123315233 | 150 | -17.25 |
| ADediting_1104832 | chr4_123315232_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-766-3p | chr4 | 123315228 | 123315234 | 7mer-m8 | 123315210 | 123315235 | 146 | -25.64 |
| ADediting_1104833 | chr4_123315264_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-17-3p | chr4 | 123315257 | 123315263 | 7mer-m8 | 123315243 | 123315264 | 150 | -18.39 |
| ADediting_1104833 | chr4_123315264_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-596 | chr4 | 123315260 | 123315266 | 7mer-m8 | 123315247 | 123315267 | 147 | -17.7 |
| ADediting_1104835 | chr4_123315317_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4691-3p | chr4 | 123315314 | 123315320 | 7mer-m8 | 123315295 | 123315321 | 152 | -29.86 |
| ADediting_1104836 | chr4_123315327_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-17-3p | chr4 | 123315323 | 123315329 | 7mer-m8 | 123315308 | 123315330 | 150 | -22.27 |
| ADediting_1104837 | chr4_123315456_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-3189-3p | chr4 | 123315450 | 123315456 | 7mer-m8 | 123315435 | 123315457 | 149 | -24.33 |
| ADediting_1104837 | chr4_123315456_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6813-3p | chr4 | 123315451 | 123315457 | 7mer-m8 | 123315438 | 123315458 | 140 | -12.55 |
| ADediting_1104838 | chr4_123315829_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4793-3p | chr4 | 123315827 | 123315833 | 7mer-m8 | 123315812 | 123315834 | 157 | -22.82 |
| ADediting_1104838 | chr4_123315829_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-508-5p | chr4 | 123315823 | 123315829 | 7mer-m8 | 123315808 | 123315830 | 157 | -23.29 |
| ADediting_1104838 | chr4_123315829_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-766-3p | chr4 | 123315822 | 123315828 | 7mer-m8 | 123315808 | 123315829 | 145 | -21.96 |
| ADediting_1104838 | chr4_123315829_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-7703 | chr4 | 123315826 | 123315832 | 7mer-m8 | 123315811 | 123315833 | 162 | -24.47 |
| ADediting_1104841 | chr4_123315912_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4433b-5p | chr4 | 123315910 | 123315917 | 8mer-1a | 123315899 | 123315917 | 146 | -16.32 |
| ADediting_1104841 | chr4_123315912_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-5690 | chr4 | 123315905 | 123315911 | 7mer-m8 | 123315892 | 123315912 | 145 | -17.72 |
| ADediting_1104841 | chr4_123315912_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-7977 | chr4 | 123315908 | 123315914 | 7mer-m8 | 123315899 | 123315915 | 145 | -12.78 |
| ADediting_1104843 | chr4_123315918_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-370-3p | chr4 | 123315915 | 123315921 | 7mer-m8 | 123315901 | 123315922 | 143 | -19.73 |
| ADediting_1104843 | chr4_123315918_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6893-3p | chr4 | 123315915 | 123315921 | 7mer-m8 | 123315902 | 123315922 | 157 | -20.84 |
| ADediting_1104845 | chr4_123315969_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-340-3p | chr4 | 123315963 | 123315970 | 8mer-1a | 123315951 | 123315970 | 149 | -16.23 |
| ADediting_1104845 | chr4_123315969_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6827-3p | chr4 | 123315963 | 123315970 | 8mer-1a | 123315951 | 123315970 | 161 | -21.98 |
| ADediting_1104847 | chr4_123316041_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-204-3p | chr4 | 123316034 | 123316041 | 8mer-1a | 123316022 | 123316041 | 152 | -19.36 |
| ADediting_1104847 | chr4_123316041_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-2276-5p | chr4 | 123316038 | 123316044 | 7mer-m8 | 123316025 | 123316045 | 145 | -19.39 |
| ADediting_1104847 | chr4_123316041_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-3192-5p | chr4 | 123316035 | 123316041 | 7mer-1a | 123316019 | 123316041 | 157 | -31.8 |
| ADediting_1104847 | chr4_123316041_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-326 | chr4 | 123316036 | 123316042 | 7mer-m8 | 123316024 | 123316043 | 140 | -18.81 |
| ADediting_1104847 | chr4_123316041_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-330-5p | chr4 | 123316036 | 123316042 | 7mer-m8 | 123316020 | 123316043 | 143 | -23.23 |
| ADediting_1104847 | chr4_123316041_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4314 | chr4 | 123316035 | 123316041 | 7mer-m8 | 123316024 | 123316042 | 151 | -24.55 |
| ADediting_1104847 | chr4_123316041_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4646-5p | chr4 | 123316034 | 123316041 | 8mer-1a | 123316018 | 123316041 | 159 | -31.84 |
| ADediting_1104848 | chr4_123316042_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-3189-3p | chr4 | 123316036 | 123316042 | 7mer-m8 | 123316024 | 123316043 | 149 | -30.34 |
| ADediting_1104848 | chr4_123316042_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6769a-3p | chr4 | 123316040 | 123316046 | 7mer-m8 | 123316027 | 123316047 | 140 | -14.74 |
| ADediting_1104849 | chr4_123316049_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-7977 | chr4 | 123316044 | 123316050 | 7mer-m8 | 123316034 | 123316051 | 145 | -16.95 |
| ADediting_1104851 | chr4_123316970_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-513a-5p | chr4 | 123316964 | 123316970 | 7mer-m8 | 123316954 | 123316971 | 152 | -17.32 |
| ADediting_1104851 | chr4_123316970_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-638 | chr4 | 123316969 | 123316975 | 7mer-1a | 123316951 | 123316975 | 155 | -34.17 |
| ADediting_1104852 | chr4_123316971_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-8052 | chr4 | 123316969 | 123316975 | 7mer-1a | 123316957 | 123316975 | 148 | -29.06 |
| ADediting_1104853 | chr4_123316997_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4707-3p | chr4 | 123316993 | 123316999 | 7mer-m8 | 123316979 | 123317000 | 154 | -23.87 |
| ADediting_1104858 | chr4_123317104_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-140-3p | chr4 | 123317099 | 123317105 | 7mer-m8 | 123317086 | 123317106 | 155 | -25.24 |
| ADediting_1104862 | chr4_123317170_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-324-3p | chr4 | 123317163 | 123317169 | 7mer-m8 | 123317150 | 123317170 | 144 | -22.15 |
| ADediting_1104862 | chr4_123317170_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4690-3p | chr4 | 123317167 | 123317174 | 8mer-1a | 123317155 | 123317174 | 157 | -26.65 |
| ADediting_1104862 | chr4_123317170_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-5685 | chr4 | 123317167 | 123317174 | 8mer-1a | 123317154 | 123317174 | 145 | -21.27 |
| ADediting_1104864 | chr4_123318692_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6802-3p | chr4 | 123318690 | 123318696 | 7mer-m8 | 123318676 | 123318697 | 149 | -22.28 |
| ADediting_1104865 | chr4_123318697_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-1224-3p | chr4 | 123318691 | 123318698 | 8mer-1a | 123318678 | 123318698 | 156 | -25.05 |
| ADediting_1104865 | chr4_123318697_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-1260a | chr4 | 123318692 | 123318698 | 7mer-m8 | 123318682 | 123318699 | 160 | -26.17 |
| ADediting_1104865 | chr4_123318697_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-1260b | chr4 | 123318692 | 123318698 | 7mer-m8 | 123318681 | 123318699 | 157 | -20.88 |
| ADediting_1104865 | chr4_123318697_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-532-3p | chr4 | 123318693 | 123318699 | 7mer-m8 | 123318680 | 123318700 | 154 | -27.53 |
| ADediting_1104865 | chr4_123318697_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6749-3p | chr4 | 123318695 | 123318701 | 7mer-m8 | 123318683 | 123318702 | 151 | -25.05 |
| ADediting_1104867 | chr4_123318774_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-1248 | chr4 | 123318771 | 123318777 | 7mer-m8 | 123318752 | 123318778 | 144 | -11.42 |
| ADediting_1104867 | chr4_123318774_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-5088-3p | chr4 | 123318772 | 123318778 | 7mer-m8 | 123318759 | 123318779 | 145 | -14.67 |
| ADediting_1576232 | chr4_123315018_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-3189-3p | chr4 | 123315012 | 123315018 | 7mer-m8 | 123314996 | 123315019 | 149 | -21.07 |
| ADediting_1576232 | chr4_123315018_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6813-3p | chr4 | 123315013 | 123315019 | 7mer-m8 | 123315000 | 123315020 | 140 | -12.79 |
| ADediting_1576235 | chr4_123315864_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4294 | chr4 | 123315862 | 123315868 | 7mer-m8 | 123315853 | 123315869 | 144 | -15.46 |
| ADediting_1576236 | chr4_123315865_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-28-5p | chr4 | 123315863 | 123315869 | 7mer-m8 | 123315848 | 123315870 | 147 | -15.06 |
| ADediting_1576236 | chr4_123315865_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-3139 | chr4 | 123315863 | 123315869 | 7mer-m8 | 123315849 | 123315870 | 152 | -16.88 |
| ADediting_1576236 | chr4_123315865_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4635 | chr4 | 123315858 | 123315864 | 7mer-m8 | 123315843 | 123315865 | 142 | -12.06 |
| ADediting_1576236 | chr4_123315865_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-708-5p | chr4 | 123315863 | 123315869 | 7mer-m8 | 123315848 | 123315870 | 146 | -16.18 |
| ADediting_1576238 | chr4_123318699_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6795-3p | chr4 | 123318695 | 123318701 | 7mer-1a | 123318681 | 123318701 | 155 | -33.87 |
| ADediting_1576238 | chr4_123318699_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6826-3p | chr4 | 123318695 | 123318701 | 7mer-m8 | 123318681 | 123318702 | 149 | -22.63 |
| ADediting_1576239 | chr4_123318754_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4524a-3p | chr4 | 123318751 | 123318757 | 7mer-m8 | 123318737 | 123318758 | 167 | -23.01 |
| ADediting_1576239 | chr4_123318754_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4524b-3p | chr4 | 123318750 | 123318756 | 7mer-m8 | 123318738 | 123318757 | 166 | -25.63 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1104819 | chr4_123314817_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-1227-3p | chr4 | 123314811 | 123314817 | 7mer-m8 | 123314799 | 123314818 | 148 | -22.88 |
| ADediting_1104821 | chr4_123314859_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-219b-3p | chr4 | 123314856 | 123314862 | 7mer-m8 | 123314845 | 123314863 | 155 | -18.52 |
| ADediting_1104821 | chr4_123314859_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-302f | chr4 | 123314855 | 123314861 | 7mer-m8 | 123314846 | 123314862 | 145 | -6.24 |
| ADediting_1104822 | chr4_123314874_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-1304-5p | chr4 | 123314867 | 123314873 | 7mer-m8 | 123314855 | 123314874 | 144 | -16.34 |
| ADediting_1104823 | chr4_123314885_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-5690 | chr4 | 123314882 | 123314888 | 7mer-m8 | 123314869 | 123314889 | 145 | -16.91 |
| ADediting_1104824 | chr4_123314895_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-20b-3p | chr4 | 123314891 | 123314897 | 7mer-m8 | 123314876 | 123314898 | 153 | -18.04 |
| ADediting_1104825 | chr4_123314897_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-20b-3p | chr4 | 123314891 | 123314897 | 7mer-m8 | 123314876 | 123314898 | 153 | -18.04 |
| ADediting_1104827 | chr4_123314939_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4684-5p | chr4 | 123314936 | 123314942 | 7mer-m8 | 123314922 | 123314943 | 151 | -12.03 |
| ADediting_1104827 | chr4_123314939_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-593-3p | chr4 | 123314938 | 123314944 | 7mer-1a | 123314926 | 123314944 | 140 | -19.02 |
| ADediting_1104830 | chr4_123315003_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6748-5p | chr4 | 123314997 | 123315003 | 7mer-m8 | 123314983 | 123315004 | 150 | -24.23 |
| ADediting_1104830 | chr4_123315003_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6769b-5p | chr4 | 123314998 | 123315004 | 7mer-m8 | 123314983 | 123315005 | 155 | -28.5 |
| ADediting_1104831 | chr4_123315204_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-3664-5p | chr4 | 123315201 | 123315207 | 7mer-m8 | 123315189 | 123315208 | 152 | -16.77 |
| ADediting_1104831 | chr4_123315204_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4522 | chr4 | 123315202 | 123315208 | 7mer-m8 | 123315188 | 123315209 | 151 | -14.59 |
| ADediting_1104831 | chr4_123315204_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6888-3p | chr4 | 123315199 | 123315205 | 7mer-m8 | 123315186 | 123315206 | 146 | -14.61 |
| ADediting_1104832 | chr4_123315232_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-1251-5p | chr4 | 123315228 | 123315234 | 7mer-m8 | 123315211 | 123315235 | 145 | -20.43 |
| ADediting_1104832 | chr4_123315232_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-1287-3p | chr4 | 123315227 | 123315233 | 7mer-m8 | 123315208 | 123315234 | 153 | -31.04 |
| ADediting_1104833 | chr4_123315264_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4327 | chr4 | 123315259 | 123315265 | 7mer-m8 | 123315249 | 123315266 | 151 | -18.83 |
| ADediting_1104833 | chr4_123315264_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6516-5p | chr4 | 123315257 | 123315263 | 7mer-m8 | 123315243 | 123315264 | 142 | -13.96 |
| ADediting_1104835 | chr4_123315317_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-5690 | chr4 | 123315314 | 123315320 | 7mer-m8 | 123315301 | 123315321 | 145 | -17.72 |
| ADediting_1104836 | chr4_123315327_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-20b-3p | chr4 | 123315323 | 123315329 | 7mer-m8 | 123315308 | 123315330 | 153 | -18.04 |
| ADediting_1104838 | chr4_123315829_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-20a-3p | chr4 | 123315827 | 123315833 | 7mer-m8 | 123315815 | 123315834 | 145 | -14.88 |
| ADediting_1104839 | chr4_123315839_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-1227-3p | chr4 | 123315833 | 123315840 | 8mer-1a | 123315821 | 123315840 | 152 | -17.38 |
| ADediting_1104839 | chr4_123315839_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6529-3p | chr4 | 123315835 | 123315841 | 7mer-m8 | 123315821 | 123315842 | 150 | -14.43 |
| ADediting_1104841 | chr4_123315912_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-676-3p | chr4 | 123315910 | 123315917 | 8mer-1a | 123315899 | 123315917 | 152 | -15.14 |
| ADediting_1104842 | chr4_123315917_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-676-3p | chr4 | 123315910 | 123315917 | 8mer-1a | 123315899 | 123315917 | 152 | -15.14 |
| ADediting_1104844 | chr4_123315920_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6804-3p | chr4 | 123315918 | 123315925 | 8mer-1a | 123315903 | 123315925 | 147 | -14.45 |
| ADediting_1104845 | chr4_123315969_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-3664-5p | chr4 | 123315966 | 123315972 | 7mer-m8 | 123315953 | 123315973 | 154 | -18.43 |
| ADediting_1104845 | chr4_123315969_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4522 | chr4 | 123315967 | 123315973 | 7mer-m8 | 123315954 | 123315974 | 149 | -15.88 |
| ADediting_1104845 | chr4_123315969_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6818-3p | chr4 | 123315962 | 123315968 | 7mer-m8 | 123315947 | 123315969 | 151 | -14.19 |
| ADediting_1104846 | chr4_123316032_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4649-3p | chr4 | 123316026 | 123316032 | 7mer-m8 | 123316013 | 123316033 | 140 | -16.96 |
| ADediting_1104846 | chr4_123316032_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-7160-5p | chr4 | 123316027 | 123316033 | 7mer-m8 | 123316015 | 123316034 | 148 | -18.59 |
| ADediting_1104847 | chr4_123316041_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-450a-1-3p | chr4 | 123316034 | 123316041 | 8mer-1a | 123316020 | 123316041 | 147 | -10.27 |
| ADediting_1104848 | chr4_123316042_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-129-1-3p | chr4 | 123316040 | 123316046 | 7mer-m8 | 123316026 | 123316047 | 140 | -10.75 |
| ADediting_1104848 | chr4_123316042_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-129-2-3p | chr4 | 123316040 | 123316046 | 7mer-m8 | 123316026 | 123316047 | 140 | -12.4 |
| ADediting_1104851 | chr4_123316970_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-10399-5p | chr4 | 123316965 | 123316971 | 7mer-m8 | 123316951 | 123316972 | 144 | -11.88 |
| ADediting_1104851 | chr4_123316970_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-7151-3p | chr4 | 123316963 | 123316970 | 8mer-1a | 123316954 | 123316970 | 146 | -17.62 |
| ADediting_1104852 | chr4_123316971_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-10399-5p | chr4 | 123316965 | 123316971 | 7mer-m8 | 123316951 | 123316972 | 144 | -11.88 |
| ADediting_1104852 | chr4_123316971_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-5089-5p | chr4 | 123316969 | 123316975 | 7mer-m8 | 123316957 | 123316976 | 146 | -13.24 |
| ADediting_1104853 | chr4_123316997_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4485-5p | chr4 | 123316995 | 123317002 | 8mer-1a | 123316987 | 123317002 | 150 | -22.24 |
| ADediting_1104853 | chr4_123316997_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6747-3p | chr4 | 123316992 | 123316998 | 7mer-m8 | 123316978 | 123316999 | 150 | -22.04 |
| ADediting_1104856 | chr4_123317042_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-892a | chr4 | 123317037 | 123317043 | 7mer-m8 | 123317024 | 123317044 | 140 | -15.2 |
| ADediting_1104857 | chr4_123317078_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4735-5p | chr4 | 123317072 | 123317078 | 7mer-m8 | 123317058 | 123317079 | 140 | -4.56 |
| ADediting_1104858 | chr4_123317104_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-7151-3p | chr4 | 123317097 | 123317103 | 7mer-m8 | 123317084 | 123317104 | 140 | -17.98 |
| ADediting_1104861 | chr4_123317131_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-1976 | chr4 | 123317128 | 123317135 | 8mer-1a | 123317115 | 123317135 | 149 | -24.39 |
| ADediting_1104861 | chr4_123317131_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6747-3p | chr4 | 123317126 | 123317133 | 8mer-1a | 123317111 | 123317133 | 149 | -23.68 |
| ADediting_1104863 | chr4_123318656_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-1227-3p | chr4 | 123318650 | 123318657 | 8mer-1a | 123318638 | 123318657 | 151 | -24.3 |
| ADediting_1104863 | chr4_123318656_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4715-3p | chr4 | 123318649 | 123318655 | 7mer-m8 | 123318636 | 123318656 | 148 | -22.42 |
| ADediting_1104863 | chr4_123318656_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6867-5p | chr4 | 123318654 | 123318660 | 7mer-m8 | 123318639 | 123318661 | 141 | -12.54 |
| ADediting_1104865 | chr4_123318697_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-12125 | chr4 | 123318693 | 123318699 | 7mer-m8 | 123318679 | 123318700 | 150 | -19.76 |
| ADediting_1576234 | chr4_123315841_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-6529-3p | chr4 | 123315835 | 123315841 | 7mer-m8 | 123315821 | 123315842 | 150 | -14.43 |
| ADediting_1576238 | chr4_123318699_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-12125 | chr4 | 123318693 | 123318699 | 7mer-m8 | 123318679 | 123318700 | 150 | -19.76 |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337757 | chr7_5495852_- | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-589-3p | chr4 | 123315213 | 123315219 | 7mer-m8 | 123315197 | 123315220 | 140 | -16.89 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-589-3p | chr4 | 123316479 | 123316485 | 7mer-m8 | 123316465 | 123316486 | 143 | -11.89 |
| ADediting_1471003 | chr9_63819626_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4477b | chr4 | 123316120 | 123316127 | 8mer-1a | 123316100 | 123316127 | 150 | -15.28 |
| ADediting_1471003 | chr9_63819626_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4477b | chr4 | 123316138 | 123316145 | 8mer-1a | 123316122 | 123316145 | 147 | -12.57 |
| ADediting_1535951 | chr14_100874558_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-337-3p | chr4 | 123317402 | 123317409 | 8mer-1a | 123317388 | 123317409 | 140 | -11.01 |
| ADediting_1596844 | chr1_162342605_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-556-3p | chr4 | 123317745 | 123317752 | 8mer-1a | 123317729 | 123317752 | 153 | -13.57 |
| ADediting_286380 | chr11_79422188_- | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-5579-3p | chr4 | 123318412 | 123318419 | 8mer-1a | 123318398 | 123318419 | 157 | -15.53 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-4775 | chr4 | 123318156 | 123318162 | 7mer-m8 | 123318142 | 123318163 | 143 | -9.72 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-5688 | chr4 | 123315782 | 123315788 | 7mer-m8 | 123315768 | 123315789 | 145 | -9.66 |
| ADediting_1337758 | chr7_5495892_- | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-589-5p | chr4 | 123316407 | 123316413 | 7mer-m8 | 123316395 | 123316414 | 144 | -17.26 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-641 | chr4 | 123318980 | 123318986 | 7mer-m8 | 123318966 | 123318987 | 145 | -9.92 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-641 | chr4 | 123318980 | 123318986 | 7mer-m8 | 123318966 | 123318987 | 145 | -9.92 |
| ADediting_291761 | chr11_93733708_- | ENSG00000145375.8 | ENST00000274008.5 | SPATA5-201 | hsa-miR-1304-3p | chr4 | 123317625 | 123317632 | 8mer-1a | 123317611 | 123317632 | 148 | -17.14 |
| Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for SPATA5 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000274008.5 | protein_coding |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_1104819 | ENST00000274008.5 | chr4_123314817_+ | 3500 | -2606.40 | -2605.50 | -2683.70 |
| ADediting_1104820 | ENST00000274008.5 | chr4_123314856_+ | 3539 | -2605.20 | -2605.50 | -2683.70 |
| ADediting_1104821 | ENST00000274008.5 | chr4_123314859_+ | 3542 | -2611.50 | -2605.50 | -2683.70 |
| ADediting_1104822 | ENST00000274008.5 | chr4_123314874_+ | 3557 | -2605.50 | -2605.50 | -2683.70 |
| ADediting_1104823 | ENST00000274008.5 | chr4_123314885_+ | 3568 | -2605.20 | -2605.50 | -2683.70 |
| ADediting_1104824 | ENST00000274008.5 | chr4_123314895_+ | 3578 | -2605.50 | -2605.50 | -2683.70 |
| ADediting_1104825 | ENST00000274008.5 | chr4_123314897_+ | 3580 | -2605.90 | -2605.50 | -2683.70 |
| ADediting_1104826 | ENST00000274008.5 | chr4_123314936_+ | 3619 | -2606.60 | -2605.50 | -2683.70 |
| ADediting_1104827 | ENST00000274008.5 | chr4_123314939_+ | 3622 | -2605.80 | -2605.50 | -2683.70 |
| ADediting_1104828 | ENST00000274008.5 | chr4_123314946_+ | 3629 | -2605.70 | -2605.50 | -2683.70 |
| ADediting_1104829 | ENST00000274008.5 | chr4_123314956_+ | 3639 | -2605.50 | -2605.50 | -2683.70 |
| ADediting_1104830 | ENST00000274008.5 | chr4_123315003_+ | 3686 | -2605.10 | -2605.50 | -2683.70 |
| ADediting_1576232 | ENST00000274008.5 | chr4_123315018_+ | 3701 | -2608.90 | -2605.50 | -2683.70 |
| ADediting_1576233 | ENST00000274008.5 | chr4_123315030_+ | 3713 | -2605.10 | -2605.50 | -2683.70 |
| ADediting_1104831 | ENST00000274008.5 | chr4_123315204_+ | 3887 | -2611.70 | -2605.50 | -2683.70 |
| ADediting_1104832 | ENST00000274008.5 | chr4_123315232_+ | 3915 | -2612.10 | -2605.50 | -2683.70 |
| ADediting_1104833 | ENST00000274008.5 | chr4_123315264_+ | 3947 | -2605.20 | -2605.50 | -2683.70 |
| ADediting_1104834 | ENST00000274008.5 | chr4_123315292_+ | 3975 | -2605.10 | -2605.50 | -2683.70 |
| ADediting_1104835 | ENST00000274008.5 | chr4_123315317_+ | 4000 | -2605.10 | -2605.50 | -2683.70 |
| ADediting_1104836 | ENST00000274008.5 | chr4_123315327_+ | 4010 | -2605.50 | -2605.50 | -2683.70 |
| ADediting_1104837 | ENST00000274008.5 | chr4_123315456_+ | 4139 | -2605.20 | -2605.50 | -2683.70 |
| ADediting_1104838 | ENST00000274008.5 | chr4_123315829_+ | 4512 | -2608.80 | -2605.50 | -2683.70 |
| ADediting_1104839 | ENST00000274008.5 | chr4_123315839_+ | 4522 | -2605.10 | -2605.50 | -2683.70 |
| ADediting_1576234 | ENST00000274008.5 | chr4_123315841_+ | 4524 | -2605.50 | -2605.50 | -2683.70 |
| ADediting_1576235 | ENST00000274008.5 | chr4_123315864_+ | 4547 | -2608.40 | -2605.50 | -2683.70 |
| ADediting_1576236 | ENST00000274008.5 | chr4_123315865_+ | 4548 | -2605.90 | -2605.50 | -2683.70 |
| ADediting_1104840 | ENST00000274008.5 | chr4_123315908_+ | 4591 | -2605.60 | -2605.50 | -2683.70 |
| ADediting_1104841 | ENST00000274008.5 | chr4_123315912_+ | 4595 | -2605.20 | -2605.50 | -2683.70 |
| ADediting_1104842 | ENST00000274008.5 | chr4_123315917_+ | 4600 | -2608.20 | -2605.50 | -2683.70 |
| ADediting_1104843 | ENST00000274008.5 | chr4_123315918_+ | 4601 | -2607.80 | -2605.50 | -2683.70 |
| ADediting_1104844 | ENST00000274008.5 | chr4_123315920_+ | 4603 | -2605.50 | -2605.50 | -2683.70 |
| ADediting_1104845 | ENST00000274008.5 | chr4_123315969_+ | 4652 | -2605.50 | -2605.50 | -2683.70 |
| ADediting_1104846 | ENST00000274008.5 | chr4_123316032_+ | 4715 | -2604.80 | -2605.50 | -2683.70 |
| ADediting_1104847 | ENST00000274008.5 | chr4_123316041_+ | 4724 | -2605.50 | -2605.50 | -2683.70 |
| ADediting_1104848 | ENST00000274008.5 | chr4_123316042_+ | 4725 | -2607.60 | -2605.50 | -2683.70 |
| ADediting_1104849 | ENST00000274008.5 | chr4_123316049_+ | 4732 | -2606.30 | -2605.50 | -2683.70 |
| ADediting_1104850 | ENST00000274008.5 | chr4_123316054_+ | 4737 | -2609.50 | -2605.50 | -2683.70 |
| ADediting_1104851 | ENST00000274008.5 | chr4_123316970_+ | 5653 | -2605.60 | -2605.50 | -2683.70 |
| ADediting_1104852 | ENST00000274008.5 | chr4_123316971_+ | 5654 | -2605.50 | -2605.50 | -2683.70 |
| ADediting_1104853 | ENST00000274008.5 | chr4_123316997_+ | 5680 | -2611.70 | -2605.50 | -2683.70 |
| ADediting_1104854 | ENST00000274008.5 | chr4_123317022_+ | 5705 | -2611.50 | -2605.50 | -2683.70 |
| ADediting_1104855 | ENST00000274008.5 | chr4_123317023_+ | 5706 | -2605.40 | -2605.50 | -2683.70 |
| ADediting_1104856 | ENST00000274008.5 | chr4_123317042_+ | 5725 | -2611.70 | -2605.50 | -2683.70 |
| ADediting_1104857 | ENST00000274008.5 | chr4_123317078_+ | 5761 | -2605.20 | -2605.50 | -2683.70 |
| ADediting_1104858 | ENST00000274008.5 | chr4_123317104_+ | 5787 | -2605.20 | -2605.50 | -2683.70 |
| ADediting_1104859 | ENST00000274008.5 | chr4_123317110_+ | 5793 | -2604.80 | -2605.50 | -2683.70 |
| ADediting_1104860 | ENST00000274008.5 | chr4_123317114_+ | 5797 | -2605.50 | -2605.50 | -2683.70 |
| ADediting_1104861 | ENST00000274008.5 | chr4_123317131_+ | 5814 | -2611.70 | -2605.50 | -2683.70 |
| ADediting_1104862 | ENST00000274008.5 | chr4_123317170_+ | 5853 | -2604.60 | -2605.50 | -2683.70 |
| ADediting_1104863 | ENST00000274008.5 | chr4_123318656_+ | 7339 | -2610.30 | -2605.50 | -2683.70 |
| ADediting_1576237 | ENST00000274008.5 | chr4_123318672_+ | 7355 | -2604.80 | -2605.50 | -2683.70 |
| ADediting_1104864 | ENST00000274008.5 | chr4_123318692_+ | 7375 | -2604.60 | -2605.50 | -2683.70 |
| ADediting_1104865 | ENST00000274008.5 | chr4_123318697_+ | 7380 | -2612.10 | -2605.50 | -2683.70 |
| ADediting_1576238 | ENST00000274008.5 | chr4_123318699_+ | 7382 | -2605.40 | -2605.50 | -2683.70 |
| ADediting_1104866 | ENST00000274008.5 | chr4_123318747_+ | 7430 | -2604.60 | -2605.50 | -2683.70 |
| ADediting_1576239 | ENST00000274008.5 | chr4_123318754_+ | 7437 | -2609.80 | -2605.50 | -2683.70 |
| ADediting_1104867 | ENST00000274008.5 | chr4_123318774_+ | 7457 | -2605.60 | -2605.50 | -2683.70 |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for SPATA5 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| CER | ADediting_1104840 | chr4_123315908_+ | 1.1459623656122e-06 | 0.38500619015394 | 1.7015010328428e-05 | 0.343301508660611 | 0.618017247472338 | -0.0410417845607059 |
| CER | ADediting_1104841 | chr4_123315912_+ | 7.83469052783352e-08 | 0.421454698393467 | 1.45691504364064e-06 | 0.381521680905673 | 0.917976275884764 | -0.00847932860195871 |
| CER | ADediting_1104843 | chr4_123315918_+ | 1.23443863951262e-05 | 0.348580492157604 | 2.41006729984658e-05 | 0.337464260292512 | 0.737364404293585 | -0.0276065748194995 |
| CER | ADediting_1104844 | chr4_123315920_+ | 8.32453934359381e-06 | 0.354934951287297 | 0.000101591909205105 | 0.312003299156709 | 0.998594043811742 | 0.000145089067964802 |
| CER | ADediting_1104845 | chr4_123315969_+ | 1.30606676468905e-05 | 0.347659460920989 | 1.73509646712283e-05 | 0.342976760559662 | 0.192282234166018 | 0.107048831017642 |
| CER | ADediting_1104846 | chr4_123316032_+ | 1.39795366447003e-07 | 0.413946619017417 | 7.78377595013204e-06 | 0.356004706814293 | 0.281490161979011 | 0.0885025567501272 |
| DLPFC | ADediting_1104859 | chr4_123317110_+ | 0.245199366857964 | -0.0661972149279623 | 0.0186924301778224 | -0.133503306615925 | 1.29202808228847e-10 | 0.354593080686249 |
| DLPFC | ADediting_1104860 | chr4_123317114_+ | 0.333936110838294 | -0.0550581658173568 | 0.0209679161052469 | -0.131080805103715 | 1.34661408005397e-09 | 0.335603106394272 |
| CER | ADediting_1104863 | chr4_123318656_+ | 0.0120339595656671 | 0.204572460974821 | 0.000166200463725892 | 0.302739422891541 | 0.818926055201222 | 0.0188477791794499 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| CER | 4.36216353799525e-53 | 0.89267655179347 | 8.07731555107495e-33 | 0.786762881706608 | 0.000334062230323233 | 0.289045945071091 |
| TCX | 8.04030102941925e-14 | 0.561186147919292 | 0.240026385655187 | 0.0965151404850375 | 3.88021979257374e-19 | 0.64676487476962 |
| FP | 8.7181537305395e-22 | 0.638672392491101 | 6.2695665360727e-26 | 0.684344741673316 | 0.0507261413326527 | 0.146683033904691 |
| IFG | 3.90764943188756e-06 | 0.781925536776892 | 0.00133094590880123 | 0.605781611763857 | 0.0379138801975197 | 0.41736111643178 |
| PG | 8.53185469474643e-46 | 0.816647472463534 | 3.69552437711959e-24 | 0.65489969467829 | 0.404758827042444 | 0.0614461678371242 |
| STG | 3.29004354486405e-19 | 0.7913718215418 | 4.51154801696713e-13 | 0.688610958020555 | 0.0507074763592198 | 0.213923546822602 |
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Relation with AD stages for SPATA5 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| CER | ADediting_1104823 | chr4_123314885_+ | 0.000742243693281862 | 0.319767427354202 |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| CER | 3.15733596157115e-05 | 0.389098417242273 |
| TCX | 3.2251975987829e-09 | 0.535893395383588 |
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RelatedDrugs for SPATA5 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SPATA5 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
| SPATA5 | C3714756 | Intellectual Disability | 3 | GENOMICS_ENGLAND |
| SPATA5 | C0543888 | Epileptic encephalopathy | 2 | GENOMICS_ENGLAND |
| SPATA5 | C0036341 | Schizophrenia | 1 | CTD_human |
| SPATA5 | C4225276 | EPILEPSY, HEARING LOSS, AND MENTAL RETARDATION SYNDROME | 1 | CTD_human;ORPHANET;UNIPROT |
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