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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for PTCHD1 |
 Gene summary |
| Gene information | Gene symbol | PTCHD1 | Gene ID | 139411 |
| Gene name | patched domain containing 1 | |
| Synonyms | AUTSX4 | |
| Cytomap | Xp22.11 | |
| Type of gene | protein-coding | |
| Description | patched domain-containing protein 1PTCHD1 isoform | |
| Modification date | 20200313 | |
| UniProtAcc | Q96NR3, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
| PTCHD1 | GO:0007224 | smoothened signaling pathway | 20844286 |
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RNA A-to-I events for PTCHD1 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_1497503(23353332, +), ADediting_1497504(23353514, +), ADediting_1497505(23354666, +), ADediting_1497506(23354673, +), ADediting_1497507(23354674, +), ADediting_1497508(23400211, +), ADediting_1497509(23400220, +), ADediting_1497510(23400227, +), ADediting_1497511(23400228, +), ADediting_1497512(23400233, +), ADediting_1497513(23400258, +), ADediting_1497514(23400263, +), ADediting_1497515(23400271, +), ADediting_1497516(23400272, +), ADediting_1497517(23400285, +), ADediting_1497518(23400294, +), ADediting_1497519(23400305, +), ADediting_1497520(23400337, +), ADediting_1497521(23400353, +), ADediting_1497522(23400363, +), ADediting_1497523(23400373, +), ADediting_1497524(23400390, +), ADediting_1497525(23400398, +), ADediting_1497526(23400399, +), ADediting_1497527(23400410, +), ADediting_1497528(23400413, +), ADediting_1497529(23400419, +), ADediting_1497530(23400423, +), ADediting_1497531(23400428, +), ADediting_1497532(23400435, +), ADediting_1497533(23400459, +), ADediting_1497534(23400461, +), ADediting_1497535(23400887, +), ADediting_1497536(23400925, +), ADediting_1497537(23400930, +), ADediting_1497538(23400935, +), ADediting_1497539(23400936, +), ADediting_1497540(23400949, +), ADediting_1497541(23400985, +), ADediting_1497542(23400995, +), ADediting_1497543(23400997, +), ADediting_1497544(23401008, +), ADediting_1497545(23401064, +), ADediting_1497546(23401086, +), ADediting_1497547(23401095, +), ADediting_1497548(23401110, +), ADediting_1497549(23401118, +), ADediting_1497550(23401122, +), ADediting_1497551(23401141, +), ADediting_1497552(23401153, +), ADediting_1497553(23401726, +), ADediting_1595132(23400266, +), ADediting_1595133(23400377, +), ADediting_1595134(23400875, +), ADediting_1595135(23400899, +), ADediting_1595136(23401078, +), ADediting_1595137(23401139, +), |
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RNA editing positional annotations for PTCHD1 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1497503 | chrX_23353332_+ | intronic |
| ADediting_1497504 | chrX_23353514_+ | intronic |
| ADediting_1497505 | chrX_23354666_+ | intronic |
| ADediting_1497506 | chrX_23354673_+ | intronic |
| ADediting_1497507 | chrX_23354674_+ | intronic |
| ADediting_1497508 | chrX_23400211_+ | UTR3 |
| ADediting_1497509 | chrX_23400220_+ | UTR3 |
| ADediting_1497510 | chrX_23400227_+ | UTR3 |
| ADediting_1497511 | chrX_23400228_+ | UTR3 |
| ADediting_1497512 | chrX_23400233_+ | UTR3 |
| ADediting_1497513 | chrX_23400258_+ | UTR3 |
| ADediting_1497514 | chrX_23400263_+ | UTR3 |
| ADediting_1497515 | chrX_23400271_+ | UTR3 |
| ADediting_1497516 | chrX_23400272_+ | UTR3 |
| ADediting_1497517 | chrX_23400285_+ | UTR3 |
| ADediting_1497518 | chrX_23400294_+ | UTR3 |
| ADediting_1497519 | chrX_23400305_+ | UTR3 |
| ADediting_1497520 | chrX_23400337_+ | UTR3 |
| ADediting_1497521 | chrX_23400353_+ | UTR3 |
| ADediting_1497522 | chrX_23400363_+ | UTR3 |
| ADediting_1497523 | chrX_23400373_+ | UTR3 |
| ADediting_1497524 | chrX_23400390_+ | UTR3 |
| ADediting_1497525 | chrX_23400398_+ | UTR3 |
| ADediting_1497526 | chrX_23400399_+ | UTR3 |
| ADediting_1497527 | chrX_23400410_+ | UTR3 |
| ADediting_1497528 | chrX_23400413_+ | UTR3 |
| ADediting_1497529 | chrX_23400419_+ | UTR3 |
| ADediting_1497530 | chrX_23400423_+ | UTR3 |
| ADediting_1497531 | chrX_23400428_+ | UTR3 |
| ADediting_1497532 | chrX_23400435_+ | UTR3 |
| ADediting_1497533 | chrX_23400459_+ | UTR3 |
| ADediting_1497534 | chrX_23400461_+ | UTR3 |
| ADediting_1497535 | chrX_23400887_+ | UTR3 |
| ADediting_1497536 | chrX_23400925_+ | UTR3 |
| ADediting_1497537 | chrX_23400930_+ | UTR3 |
| ADediting_1497538 | chrX_23400935_+ | UTR3 |
| ADediting_1497539 | chrX_23400936_+ | UTR3 |
| ADediting_1497540 | chrX_23400949_+ | UTR3 |
| ADediting_1497541 | chrX_23400985_+ | UTR3 |
| ADediting_1497542 | chrX_23400995_+ | UTR3 |
| ADediting_1497543 | chrX_23400997_+ | UTR3 |
| ADediting_1497544 | chrX_23401008_+ | UTR3 |
| ADediting_1497545 | chrX_23401064_+ | UTR3 |
| ADediting_1497546 | chrX_23401086_+ | UTR3 |
| ADediting_1497547 | chrX_23401095_+ | UTR3 |
| ADediting_1497548 | chrX_23401110_+ | UTR3 |
| ADediting_1497549 | chrX_23401118_+ | UTR3 |
| ADediting_1497550 | chrX_23401122_+ | UTR3 |
| ADediting_1497551 | chrX_23401141_+ | UTR3 |
| ADediting_1497552 | chrX_23401153_+ | UTR3 |
| ADediting_1497553 | chrX_23401726_+ | UTR3 |
| ADediting_1595132 | chrX_23400266_+ | UTR3 |
| ADediting_1595133 | chrX_23400377_+ | UTR3 |
| ADediting_1595134 | chrX_23400875_+ | UTR3 |
| ADediting_1595135 | chrX_23400899_+ | UTR3 |
| ADediting_1595136 | chrX_23401078_+ | UTR3 |
| ADediting_1595137 | chrX_23401139_+ | UTR3 |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1497503 | chrX_23353332_+ | SINE | Alu | Name=AluSp |
| ADediting_1497504 | chrX_23353514_+ | SINE | Alu | Name=AluSp |
| ADediting_1497505 | chrX_23354666_+ | SINE | Alu | Name=AluSc |
| ADediting_1497506 | chrX_23354673_+ | SINE | Alu | Name=AluSc |
| ADediting_1497507 | chrX_23354674_+ | SINE | Alu | Name=AluSc |
| ADediting_1497508 | chrX_23400211_+ | SINE | Alu | Name=AluSc |
| ADediting_1497509 | chrX_23400220_+ | SINE | Alu | Name=AluSc |
| ADediting_1497510 | chrX_23400227_+ | SINE | Alu | Name=AluSc |
| ADediting_1497511 | chrX_23400228_+ | SINE | Alu | Name=AluSc |
| ADediting_1497512 | chrX_23400233_+ | SINE | Alu | Name=AluSc |
| ADediting_1497513 | chrX_23400258_+ | SINE | Alu | Name=AluSc |
| ADediting_1497514 | chrX_23400263_+ | SINE | Alu | Name=AluSc |
| ADediting_1497515 | chrX_23400271_+ | SINE | Alu | Name=AluSc |
| ADediting_1497516 | chrX_23400272_+ | SINE | Alu | Name=AluSc |
| ADediting_1497517 | chrX_23400285_+ | SINE | Alu | Name=AluSc |
| ADediting_1497518 | chrX_23400294_+ | SINE | Alu | Name=AluSc |
| ADediting_1497519 | chrX_23400305_+ | SINE | Alu | Name=AluSc |
| ADediting_1497520 | chrX_23400337_+ | SINE | Alu | Name=AluSc |
| ADediting_1497521 | chrX_23400353_+ | SINE | Alu | Name=AluSc |
| ADediting_1497522 | chrX_23400363_+ | SINE | Alu | Name=AluSc |
| ADediting_1497523 | chrX_23400373_+ | SINE | Alu | Name=AluSc |
| ADediting_1497524 | chrX_23400390_+ | SINE | Alu | Name=AluSc |
| ADediting_1497525 | chrX_23400398_+ | SINE | Alu | Name=AluSc |
| ADediting_1497526 | chrX_23400399_+ | SINE | Alu | Name=AluSc |
| ADediting_1497527 | chrX_23400410_+ | SINE | Alu | Name=AluSc |
| ADediting_1497528 | chrX_23400413_+ | SINE | Alu | Name=AluSc |
| ADediting_1497529 | chrX_23400419_+ | SINE | Alu | Name=AluSc |
| ADediting_1497530 | chrX_23400423_+ | SINE | Alu | Name=AluSc |
| ADediting_1497531 | chrX_23400428_+ | SINE | Alu | Name=AluSc |
| ADediting_1497532 | chrX_23400435_+ | SINE | Alu | Name=AluSc |
| ADediting_1497533 | chrX_23400459_+ | SINE | Alu | Name=AluSc |
| ADediting_1497534 | chrX_23400461_+ | SINE | Alu | Name=AluSc |
| ADediting_1497535 | chrX_23400887_+ | SINE | Alu | Name=AluY |
| ADediting_1497536 | chrX_23400925_+ | SINE | Alu | Name=AluY |
| ADediting_1497537 | chrX_23400930_+ | SINE | Alu | Name=AluY |
| ADediting_1497538 | chrX_23400935_+ | SINE | Alu | Name=AluY |
| ADediting_1497539 | chrX_23400936_+ | SINE | Alu | Name=AluY |
| ADediting_1497540 | chrX_23400949_+ | SINE | Alu | Name=AluY |
| ADediting_1497541 | chrX_23400985_+ | SINE | Alu | Name=AluY |
| ADediting_1497542 | chrX_23400995_+ | SINE | Alu | Name=AluY |
| ADediting_1497543 | chrX_23400997_+ | SINE | Alu | Name=AluY |
| ADediting_1497544 | chrX_23401008_+ | SINE | Alu | Name=AluY |
| ADediting_1497545 | chrX_23401064_+ | SINE | Alu | Name=AluY |
| ADediting_1497546 | chrX_23401086_+ | SINE | Alu | Name=AluY |
| ADediting_1497547 | chrX_23401095_+ | SINE | Alu | Name=AluY |
| ADediting_1497548 | chrX_23401110_+ | SINE | Alu | Name=AluY |
| ADediting_1497549 | chrX_23401118_+ | SINE | Alu | Name=AluY |
| ADediting_1497550 | chrX_23401122_+ | SINE | Alu | Name=AluY |
| ADediting_1497551 | chrX_23401141_+ | SINE | Alu | Name=AluY |
| ADediting_1497552 | chrX_23401153_+ | SINE | Alu | Name=AluY |
| ADediting_1595132 | chrX_23400266_+ | SINE | Alu | Name=AluSc |
| ADediting_1595133 | chrX_23400377_+ | SINE | Alu | Name=AluSc |
| ADediting_1595134 | chrX_23400875_+ | SINE | Alu | Name=AluY |
| ADediting_1595135 | chrX_23400899_+ | SINE | Alu | Name=AluY |
| ADediting_1595136 | chrX_23401078_+ | SINE | Alu | Name=AluY |
| ADediting_1595137 | chrX_23401139_+ | SINE | Alu | Name=AluY |
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RNA A-to-I editing events in the alternative splicing sites for PTCHD1 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PTCHD1 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for PTCHD1 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for PTCHD1 |
| RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1497509 | chrX_23400220_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-1199-5p | chrX | 23400213 | 23400219 | 7mer-m8 | 23400199 | 23400220 | 148 | -28.04 |
| ADediting_1497509 | chrX_23400220_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4650-5p | chrX | 23400218 | 23400224 | 7mer-m8 | 23400207 | 23400225 | 140 | -16.99 |
| ADediting_1497509 | chrX_23400220_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6751-3p | chrX | 23400213 | 23400219 | 7mer-m8 | 23400200 | 23400220 | 153 | -17.72 |
| ADediting_1497510 | chrX_23400227_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-513a-5p | chrX | 23400221 | 23400227 | 7mer-m8 | 23400211 | 23400228 | 144 | -16.68 |
| ADediting_1497510 | chrX_23400227_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-638 | chrX | 23400226 | 23400232 | 7mer-1a | 23400208 | 23400232 | 149 | -31.55 |
| ADediting_1497511 | chrX_23400228_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-8052 | chrX | 23400226 | 23400232 | 7mer-1a | 23400214 | 23400232 | 140 | -24.15 |
| ADediting_1497512 | chrX_23400233_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-371a-3p | chrX | 23400231 | 23400237 | 7mer-m8 | 23400212 | 23400238 | 147 | -19.81 |
| ADediting_1497519 | chrX_23400305_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-412-3p | chrX | 23400298 | 23400304 | 7mer-m8 | 23400283 | 23400305 | 147 | -17.11 |
| ADediting_1497519 | chrX_23400305_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4508 | chrX | 23400303 | 23400309 | 7mer-m8 | 23400294 | 23400310 | 140 | -24 |
| ADediting_1497519 | chrX_23400305_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6754-3p | chrX | 23400298 | 23400304 | 7mer-m8 | 23400285 | 23400305 | 147 | -18.61 |
| ADediting_1497522 | chrX_23400363_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-140-3p | chrX | 23400358 | 23400364 | 7mer-m8 | 23400345 | 23400365 | 155 | -21.26 |
| ADediting_1497523 | chrX_23400373_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-1207-3p | chrX | 23400366 | 23400372 | 7mer-m8 | 23400355 | 23400373 | 145 | -13.53 |
| ADediting_1497523 | chrX_23400373_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-646 | chrX | 23400368 | 23400374 | 7mer-m8 | 23400356 | 23400375 | 148 | -21.05 |
| ADediting_1497524 | chrX_23400390_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6845-3p | chrX | 23400383 | 23400389 | 7mer-m8 | 23400370 | 23400390 | 152 | -18.86 |
| ADediting_1497526 | chrX_23400399_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4437 | chrX | 23400395 | 23400401 | 7mer-m8 | 23400382 | 23400402 | 153 | -21.97 |
| ADediting_1497527 | chrX_23400410_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-1306-5p | chrX | 23400403 | 23400409 | 7mer-m8 | 23400387 | 23400410 | 146 | -21.98 |
| ADediting_1497530 | chrX_23400423_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-324-3p | chrX | 23400416 | 23400422 | 7mer-m8 | 23400401 | 23400423 | 145 | -21.9 |
| ADediting_1497530 | chrX_23400423_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6075 | chrX | 23400420 | 23400427 | 8mer-1a | 23400406 | 23400427 | 148 | -22.79 |
| ADediting_1497531 | chrX_23400428_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-605-5p | chrX | 23400426 | 23400432 | 7mer-m8 | 23400406 | 23400433 | 147 | -16.33 |
| ADediting_1497534 | chrX_23400461_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-10a-5p | chrX | 23400456 | 23400462 | 7mer-m8 | 23400444 | 23400463 | 148 | -18.12 |
| ADediting_1497534 | chrX_23400461_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-10b-5p | chrX | 23400456 | 23400462 | 7mer-m8 | 23400444 | 23400463 | 148 | -18.17 |
| ADediting_1497534 | chrX_23400461_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-3620-3p | chrX | 23400457 | 23400464 | 8mer-1a | 23400443 | 23400464 | 143 | -19.14 |
| ADediting_1497534 | chrX_23400461_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6784-3p | chrX | 23400459 | 23400466 | 8mer-1a | 23400445 | 23400466 | 140 | -20.1 |
| ADediting_1497534 | chrX_23400461_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6862-3p | chrX | 23400459 | 23400466 | 8mer-1a | 23400443 | 23400466 | 151 | -22.02 |
| ADediting_1497536 | chrX_23400925_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4537 | chrX | 23400922 | 23400929 | 8mer-1a | 23400909 | 23400929 | 154 | -25.95 |
| ADediting_1497539 | chrX_23400936_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-17-3p | chrX | 23400929 | 23400935 | 7mer-m8 | 23400915 | 23400936 | 150 | -16.31 |
| ADediting_1497539 | chrX_23400936_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-596 | chrX | 23400932 | 23400938 | 7mer-m8 | 23400919 | 23400939 | 140 | -18.42 |
| ADediting_1497540 | chrX_23400949_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-1247-3p | chrX | 23400944 | 23400950 | 7mer-m8 | 23400929 | 23400951 | 156 | -25.89 |
| ADediting_1497541 | chrX_23400985_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4691-3p | chrX | 23400982 | 23400988 | 7mer-m8 | 23400962 | 23400989 | 150 | -26.36 |
| ADediting_1497542 | chrX_23400995_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-17-3p | chrX | 23400991 | 23400997 | 7mer-m8 | 23400976 | 23400998 | 150 | -22.27 |
| ADediting_1497543 | chrX_23400997_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-100-5p | chrX | 23400993 | 23400999 | 7mer-m8 | 23400980 | 23401000 | 160 | -22.54 |
| ADediting_1497543 | chrX_23400997_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-99a-5p | chrX | 23400993 | 23400999 | 7mer-m8 | 23400980 | 23401000 | 160 | -21.42 |
| ADediting_1497543 | chrX_23400997_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-99b-5p | chrX | 23400993 | 23400999 | 7mer-m8 | 23400979 | 23401000 | 152 | -26.22 |
| ADediting_1497544 | chrX_23401008_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-10400-5p | chrX | 23401003 | 23401009 | 7mer-m8 | 23400989 | 23401010 | 157 | -31.37 |
| ADediting_1497544 | chrX_23401008_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-3960 | chrX | 23401002 | 23401008 | 7mer-m8 | 23400993 | 23401012 | 155 | -28.22 |
| ADediting_1497544 | chrX_23401008_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-3960 | chrX | 23401005 | 23401011 | 7mer-m8 | 23400993 | 23401012 | 155 | -28.22 |
| ADediting_1497544 | chrX_23401008_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4467 | chrX | 23401003 | 23401009 | 7mer-m8 | 23400988 | 23401010 | 155 | -25.27 |
| ADediting_1497544 | chrX_23401008_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-8072 | chrX | 23401002 | 23401008 | 7mer-m8 | 23400988 | 23401009 | 153 | -29.52 |
| ADediting_1497546 | chrX_23401086_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-196a-3p | chrX | 23401081 | 23401087 | 7mer-m8 | 23401064 | 23401088 | 150 | -17.28 |
| ADediting_1497547 | chrX_23401095_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4786-5p | chrX | 23401093 | 23401099 | 7mer-m8 | 23401079 | 23401100 | 149 | -20.86 |
| ADediting_1497547 | chrX_23401095_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6502-3p | chrX | 23401092 | 23401098 | 7mer-m8 | 23401079 | 23401099 | 147 | -13.17 |
| ADediting_1497548 | chrX_23401110_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-3975 | chrX | 23401107 | 23401113 | 7mer-m8 | 23401093 | 23401114 | 140 | -12.94 |
| ADediting_1497548 | chrX_23401110_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6069 | chrX | 23401105 | 23401111 | 7mer-m8 | 23401092 | 23401112 | 141 | -15.79 |
| ADediting_1497549 | chrX_23401118_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4776-5p | chrX | 23401115 | 23401121 | 7mer-m8 | 23401102 | 23401122 | 158 | -26.42 |
| ADediting_1497549 | chrX_23401118_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4800-5p | chrX | 23401116 | 23401122 | 7mer-m8 | 23401100 | 23401123 | 155 | -24.97 |
| ADediting_1497550 | chrX_23401122_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4767 | chrX | 23401120 | 23401126 | 7mer-m8 | 23401104 | 23401127 | 142 | -17.9 |
| ADediting_1497551 | chrX_23401141_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-3189-3p | chrX | 23401135 | 23401141 | 7mer-m8 | 23401119 | 23401142 | 153 | -24.71 |
| ADediting_1497551 | chrX_23401141_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6813-3p | chrX | 23401136 | 23401142 | 7mer-m8 | 23401123 | 23401143 | 140 | -12.55 |
| ADediting_1497553 | chrX_23401726_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-652-5p | chrX | 23401723 | 23401729 | 7mer-m8 | 23401703 | 23401730 | 145 | -22.98 |
| ADediting_1595134 | chrX_23400875_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4733-5p | chrX | 23400871 | 23400877 | 7mer-m8 | 23400857 | 23400878 | 148 | -11.57 |
| ADediting_1595135 | chrX_23400899_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-3940-3p | chrX | 23400896 | 23400902 | 7mer-m8 | 23400882 | 23400903 | 151 | -22.47 |
| ADediting_1595137 | chrX_23401139_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6771-5p | chrX | 23401133 | 23401140 | 8mer-1a | 23401119 | 23401140 | 151 | -26.02 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1497508 | chrX_23400211_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4252 | chrX | 23400209 | 23400215 | 7mer-m8 | 23400196 | 23400216 | 152 | -20.59 |
| ADediting_1497508 | chrX_23400211_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6529-3p | chrX | 23400205 | 23400211 | 7mer-m8 | 23400190 | 23400212 | 151 | -17.4 |
| ADediting_1497508 | chrX_23400211_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6889-3p | chrX | 23400205 | 23400211 | 7mer-m8 | 23400191 | 23400212 | 151 | -22.09 |
| ADediting_1497510 | chrX_23400227_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-10399-5p | chrX | 23400222 | 23400228 | 7mer-m8 | 23400208 | 23400229 | 148 | -11.63 |
| ADediting_1497510 | chrX_23400227_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6504-3p | chrX | 23400222 | 23400228 | 7mer-m8 | 23400208 | 23400229 | 152 | -15.11 |
| ADediting_1497510 | chrX_23400227_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-7151-3p | chrX | 23400220 | 23400227 | 8mer-1a | 23400207 | 23400227 | 152 | -18.3 |
| ADediting_1497511 | chrX_23400228_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-10399-5p | chrX | 23400222 | 23400228 | 7mer-m8 | 23400208 | 23400229 | 148 | -11.63 |
| ADediting_1497511 | chrX_23400228_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-5089-5p | chrX | 23400226 | 23400232 | 7mer-m8 | 23400213 | 23400233 | 145 | -13.6 |
| ADediting_1497511 | chrX_23400228_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6504-3p | chrX | 23400222 | 23400228 | 7mer-m8 | 23400208 | 23400229 | 152 | -15.11 |
| ADediting_1497512 | chrX_23400233_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-5089-5p | chrX | 23400226 | 23400232 | 7mer-m8 | 23400213 | 23400233 | 145 | -13.6 |
| ADediting_1497512 | chrX_23400233_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-512-3p | chrX | 23400231 | 23400237 | 7mer-m8 | 23400217 | 23400238 | 149 | -15.03 |
| ADediting_1497512 | chrX_23400233_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6506-5p | chrX | 23400227 | 23400233 | 7mer-m8 | 23400212 | 23400234 | 144 | -15.46 |
| ADediting_1497517 | chrX_23400285_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-1193 | chrX | 23400281 | 23400287 | 7mer-m8 | 23400266 | 23400288 | 140 | -15.22 |
| ADediting_1497517 | chrX_23400285_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-2392 | chrX | 23400282 | 23400288 | 7mer-m8 | 23400270 | 23400289 | 140 | -14.04 |
| ADediting_1497517 | chrX_23400285_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6843-3p | chrX | 23400278 | 23400284 | 7mer-m8 | 23400267 | 23400285 | 150 | -19.03 |
| ADediting_1497517 | chrX_23400285_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6848-3p | chrX | 23400278 | 23400284 | 7mer-m8 | 23400267 | 23400285 | 140 | -13.25 |
| ADediting_1497518 | chrX_23400294_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-3190-5p | chrX | 23400288 | 23400294 | 7mer-m8 | 23400276 | 23400295 | 150 | -18.87 |
| ADediting_1497518 | chrX_23400294_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4435 | chrX | 23400287 | 23400293 | 7mer-m8 | 23400271 | 23400294 | 146 | -16 |
| ADediting_1497519 | chrX_23400305_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-193b-5p | chrX | 23400302 | 23400308 | 7mer-m8 | 23400288 | 23400309 | 142 | -21.77 |
| ADediting_1497520 | chrX_23400337_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4735-5p | chrX | 23400331 | 23400337 | 7mer-m8 | 23400317 | 23400338 | 140 | -4.28 |
| ADediting_1497520 | chrX_23400337_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4775 | chrX | 23400330 | 23400336 | 7mer-m8 | 23400315 | 23400337 | 153 | -6.63 |
| ADediting_1497521 | chrX_23400353_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-1227-3p | chrX | 23400347 | 23400353 | 7mer-m8 | 23400335 | 23400354 | 147 | -29.47 |
| ADediting_1497521 | chrX_23400353_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4715-3p | chrX | 23400346 | 23400352 | 7mer-m8 | 23400333 | 23400353 | 146 | -22.42 |
| ADediting_1497521 | chrX_23400353_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6767-3p | chrX | 23400350 | 23400356 | 7mer-m8 | 23400336 | 23400357 | 151 | -20.96 |
| ADediting_1497522 | chrX_23400363_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-7151-3p | chrX | 23400356 | 23400362 | 7mer-m8 | 23400343 | 23400363 | 140 | -18.72 |
| ADediting_1497522 | chrX_23400363_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-8052 | chrX | 23400362 | 23400368 | 7mer-1a | 23400348 | 23400368 | 141 | -25.19 |
| ADediting_1497523 | chrX_23400373_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6869-5p | chrX | 23400370 | 23400376 | 7mer-m8 | 23400353 | 23400377 | 153 | -22.99 |
| ADediting_1497528 | chrX_23400413_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-891b | chrX | 23400411 | 23400418 | 8mer-1a | 23400395 | 23400418 | 147 | -16.14 |
| ADediting_1497530 | chrX_23400423_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4284 | chrX | 23400419 | 23400425 | 7mer-m8 | 23400409 | 23400426 | 146 | -12.71 |
| ADediting_1497531 | chrX_23400428_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4638-5p | chrX | 23400422 | 23400429 | 8mer-1a | 23400410 | 23400429 | 146 | -20.11 |
| ADediting_1497533 | chrX_23400459_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-744-3p | chrX | 23400452 | 23400458 | 7mer-m8 | 23400438 | 23400459 | 147 | -15.85 |
| ADediting_1497534 | chrX_23400461_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6794-3p | chrX | 23400458 | 23400464 | 7mer-m8 | 23400446 | 23400465 | 140 | -19.74 |
| ADediting_1497535 | chrX_23400887_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-5586-3p | chrX | 23400884 | 23400890 | 7mer-m8 | 23400870 | 23400891 | 148 | -14.57 |
| ADediting_1497535 | chrX_23400887_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-759 | chrX | 23400885 | 23400891 | 7mer-m8 | 23400870 | 23400892 | 147 | -13.06 |
| ADediting_1497536 | chrX_23400925_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-3160-3p | chrX | 23400922 | 23400929 | 8mer-1a | 23400908 | 23400929 | 150 | -19.59 |
| ADediting_1497538 | chrX_23400935_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4327 | chrX | 23400931 | 23400937 | 7mer-m8 | 23400919 | 23400938 | 147 | -18.29 |
| ADediting_1497538 | chrX_23400935_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6516-5p | chrX | 23400929 | 23400935 | 7mer-m8 | 23400914 | 23400936 | 149 | -16.06 |
| ADediting_1497539 | chrX_23400936_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4327 | chrX | 23400931 | 23400937 | 7mer-m8 | 23400919 | 23400938 | 147 | -18.29 |
| ADediting_1497539 | chrX_23400936_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6516-5p | chrX | 23400929 | 23400935 | 7mer-m8 | 23400914 | 23400936 | 149 | -16.06 |
| ADediting_1497540 | chrX_23400949_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-3689a-3p | chrX | 23400942 | 23400948 | 7mer-m8 | 23400929 | 23400949 | 154 | -25.44 |
| ADediting_1497540 | chrX_23400949_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-490-3p | chrX | 23400946 | 23400952 | 7mer-m8 | 23400931 | 23400953 | 146 | -16.92 |
| ADediting_1497540 | chrX_23400949_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6780a-5p | chrX | 23400942 | 23400948 | 7mer-m8 | 23400925 | 23400949 | 147 | -25 |
| ADediting_1497541 | chrX_23400985_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-5690 | chrX | 23400982 | 23400988 | 7mer-m8 | 23400969 | 23400989 | 145 | -17.72 |
| ADediting_1497542 | chrX_23400995_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-20b-3p | chrX | 23400991 | 23400997 | 7mer-m8 | 23400976 | 23400998 | 153 | -18.04 |
| ADediting_1497543 | chrX_23400997_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-20b-3p | chrX | 23400991 | 23400997 | 7mer-m8 | 23400976 | 23400998 | 153 | -18.04 |
| ADediting_1497543 | chrX_23400997_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6804-3p | chrX | 23400995 | 23401001 | 7mer-m8 | 23400980 | 23401002 | 155 | -18.29 |
| ADediting_1497548 | chrX_23401110_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-1258 | chrX | 23401104 | 23401110 | 7mer-m8 | 23401094 | 23401111 | 147 | -17.72 |
| ADediting_1497548 | chrX_23401110_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-655-5p | chrX | 23401107 | 23401113 | 7mer-m8 | 23401093 | 23401114 | 140 | -8.74 |
| ADediting_1497550 | chrX_23401122_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-3165 | chrX | 23401117 | 23401123 | 7mer-m8 | 23401102 | 23401124 | 148 | -13.47 |
| ADediting_1497550 | chrX_23401122_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6745 | chrX | 23401118 | 23401124 | 7mer-m8 | 23401103 | 23401125 | 150 | -23.54 |
| ADediting_1497553 | chrX_23401726_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-600 | chrX | 23401720 | 23401726 | 7mer-m8 | 23401704 | 23401727 | 155 | -13.36 |
| ADediting_1595133 | chrX_23400377_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-1200 | chrX | 23400373 | 23400379 | 7mer-m8 | 23400359 | 23400380 | 141 | -18.61 |
| ADediting_1595133 | chrX_23400377_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6869-5p | chrX | 23400370 | 23400376 | 7mer-m8 | 23400353 | 23400377 | 153 | -22.99 |
| ADediting_1595134 | chrX_23400875_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-371b-5p | chrX | 23400869 | 23400876 | 8mer-1a | 23400854 | 23400876 | 153 | -12.22 |
| ADediting_1595134 | chrX_23400875_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-373-5p | chrX | 23400869 | 23400876 | 8mer-1a | 23400856 | 23400876 | 142 | -10.98 |
| ADediting_1595134 | chrX_23400875_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-616-5p | chrX | 23400869 | 23400876 | 8mer-1a | 23400855 | 23400876 | 140 | -8.14 |
| ADediting_1595135 | chrX_23400899_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-1262 | chrX | 23400892 | 23400898 | 7mer-m8 | 23400877 | 23400899 | 144 | -15.28 |
| ADediting_1595135 | chrX_23400899_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-661 | chrX | 23400895 | 23400901 | 7mer-m8 | 23400879 | 23400902 | 147 | -18.48 |
| ADediting_1595135 | chrX_23400899_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6736-5p | chrX | 23400892 | 23400898 | 7mer-m8 | 23400879 | 23400899 | 143 | -20.94 |
| ADediting_1595135 | chrX_23400899_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6742-3p | chrX | 23400894 | 23400900 | 7mer-m8 | 23400882 | 23400901 | 140 | -13.49 |
| ADediting_1595137 | chrX_23401139_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-30b-3p | chrX | 23401132 | 23401139 | 8mer-1a | 23401118 | 23401139 | 151 | -17.42 |
| ADediting_1595137 | chrX_23401139_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-3689a-3p | chrX | 23401132 | 23401139 | 8mer-1a | 23401119 | 23401139 | 143 | -22.02 |
| ADediting_1595137 | chrX_23401139_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-3689b-3p | chrX | 23401132 | 23401139 | 8mer-1a | 23401119 | 23401139 | 143 | -20.35 |
| ADediting_1595137 | chrX_23401139_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-3689c | chrX | 23401132 | 23401139 | 8mer-1a | 23401119 | 23401139 | 143 | -20.35 |
| ADediting_1595137 | chrX_23401139_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-6779-5p | chrX | 23401132 | 23401139 | 8mer-1a | 23401116 | 23401139 | 147 | -25.77 |
| ADediting_1595137 | chrX_23401139_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-887-5p | chrX | 23401133 | 23401140 | 8mer-1a | 23401120 | 23401140 | 147 | -13.82 |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-5688 | chrX | 23400838 | 23400844 | 7mer-m8 | 23400825 | 23400845 | 159 | -16.55 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-589-3p | chrX | 23396875 | 23396881 | 7mer-m8 | 23396859 | 23396882 | 150 | -18.47 |
| ADediting_1391023 | chr8_140732605_- | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-151a-3p | chrX | 23395463 | 23395470 | 8mer-1a | 23395451 | 23395470 | 153 | -15.15 |
| ADediting_1391023 | chr8_140732605_- | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-151a-3p | chrX | 23395955 | 23395962 | 8mer-1a | 23395942 | 23395962 | 140 | -18.75 |
| ADediting_1391023 | chr8_140732605_- | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-151a-3p | chrX | 23398747 | 23398753 | 7mer-m8 | 23398734 | 23398754 | 140 | -18.99 |
| ADediting_1391023 | chr8_140732605_- | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-151a-3p | chrX | 23402926 | 23402933 | 8mer-1a | 23402909 | 23402933 | 153 | -19.11 |
| ADediting_1471003 | chr9_63819626_+ | ENSG00000165186.12 | ENST00000456522.1 | PTCHD1-202 | hsa-miR-4477b | chrX | 23392974 | 23392981 | 8mer-1a | 23392960 | 23392981 | 152 | -9.39 |
| ADediting_1471004 | chr9_63819627_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4477b | chrX | 23394695 | 23394701 | 7mer-m8 | 23394681 | 23394702 | 153 | -13.76 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-381-3p | chrX | 23400696 | 23400702 | 7mer-m8 | 23400682 | 23400703 | 167 | -23.36 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000165186.12 | ENST00000456522.1 | PTCHD1-202 | hsa-miR-381-3p | chrX | 23392734 | 23392740 | 7mer-m8 | 23392720 | 23392741 | 142 | -14.63 |
| ADediting_1596844 | chr1_162342605_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-556-3p | chrX | 23403144 | 23403150 | 7mer-m8 | 23403130 | 23403151 | 156 | -15.39 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-641 | chrX | 23395527 | 23395533 | 7mer-m8 | 23395511 | 23395534 | 154 | -14.69 |
| ADediting_496066 | chr15_66496985_- | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4512 | chrX | 23395673 | 23395679 | 7mer-m8 | 23395654 | 23395680 | 153 | -24.5 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4775 | chrX | 23403851 | 23403858 | 8mer-1a | 23403837 | 23403858 | 151 | -11.89 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4775 | chrX | 23403974 | 23403980 | 7mer-m8 | 23403962 | 23403981 | 159 | -11.98 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-5585-3p | chrX | 23397210 | 23397216 | 7mer-m8 | 23397196 | 23397217 | 154 | -14.62 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_107020 | chr1_37500952_- | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-5581-3p | chrX | 23395188 | 23395194 | 7mer-m8 | 23395174 | 23395195 | 140 | -11.6 |
| ADediting_107020 | chr1_37500952_- | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-5581-3p | chrX | 23402199 | 23402205 | 7mer-m8 | 23402185 | 23402206 | 142 | -15.85 |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-5688 | chrX | 23397405 | 23397411 | 7mer-m8 | 23397394 | 23397412 | 143 | -9.4 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-641 | chrX | 23397986 | 23397992 | 7mer-m8 | 23397967 | 23397993 | 152 | -16.89 |
| ADediting_1596844 | chr1_162342605_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-556-3p | chrX | 23403859 | 23403866 | 8mer-1a | 23403845 | 23403866 | 144 | -6.93 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-641 | chrX | 23397986 | 23397992 | 7mer-m8 | 23397967 | 23397993 | 152 | -16.89 |
| ADediting_291761 | chr11_93733708_- | ENSG00000165186.12 | ENST00000456522.1 | PTCHD1-202 | hsa-miR-1304-3p | chrX | 23392912 | 23392918 | 7mer-m8 | 23392899 | 23392919 | 146 | -18.32 |
| ADediting_496066 | chr15_66496985_- | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4512 | chrX | 23395551 | 23395557 | 7mer-m8 | 23395536 | 23395558 | 154 | -19.64 |
| ADediting_496066 | chr15_66496985_- | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4512 | chrX | 23403633 | 23403639 | 7mer-m8 | 23403618 | 23403640 | 151 | -16.18 |
| ADediting_527135 | chr16_24203190_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-1273h-3p | chrX | 23401752 | 23401758 | 7mer-m8 | 23401734 | 23401759 | 145 | -25.29 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4775 | chrX | 23398967 | 23398973 | 7mer-m8 | 23398954 | 23398974 | 150 | -7.62 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4775 | chrX | 23400330 | 23400336 | 7mer-m8 | 23400315 | 23400337 | 153 | -6.63 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-4775 | chrX | 23402701 | 23402707 | 7mer-m8 | 23402687 | 23402708 | 142 | -6.11 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-5585-3p | chrX | 23399310 | 23399316 | 7mer-m8 | 23399293 | 23399317 | 151 | -10.66 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-5585-3p | chrX | 23399646 | 23399652 | 7mer-m8 | 23399629 | 23399653 | 146 | -14.33 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-5585-3p | chrX | 23399310 | 23399316 | 7mer-m8 | 23399293 | 23399317 | 151 | -10.66 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000165186.12 | ENST00000379361.5 | PTCHD1-201 | hsa-miR-5585-3p | chrX | 23399646 | 23399652 | 7mer-m8 | 23399629 | 23399653 | 146 | -14.33 |
| Differentially expressed gene-miRNA network |
| Differentially expressed mRNA-miRNA network |
 |
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The effects of the RNA editing to the stability of the RNA structures for PTCHD1 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000379361.5 | protein_coding |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_1497508 | ENST00000379361.5 | chrX_23400211_+ | 8720 | -3760.47 | -3754.27 | -3808.87 |
| ADediting_1497509 | ENST00000379361.5 | chrX_23400220_+ | 8729 | -3756.87 | -3754.27 | -3808.87 |
| ADediting_1497510 | ENST00000379361.5 | chrX_23400227_+ | 8736 | -3754.37 | -3754.27 | -3808.87 |
| ADediting_1497511 | ENST00000379361.5 | chrX_23400228_+ | 8737 | -3754.27 | -3754.27 | -3808.87 |
| ADediting_1497512 | ENST00000379361.5 | chrX_23400233_+ | 8742 | -3753.57 | -3754.27 | -3808.87 |
| ADediting_1497513 | ENST00000379361.5 | chrX_23400258_+ | 8767 | -3758.97 | -3754.27 | -3808.87 |
| ADediting_1497514 | ENST00000379361.5 | chrX_23400263_+ | 8772 | -3753.87 | -3754.27 | -3808.87 |
| ADediting_1595132 | ENST00000379361.5 | chrX_23400266_+ | 8775 | -3753.37 | -3754.27 | -3808.87 |
| ADediting_1497515 | ENST00000379361.5 | chrX_23400271_+ | 8780 | -3753.97 | -3754.27 | -3808.87 |
| ADediting_1497516 | ENST00000379361.5 | chrX_23400272_+ | 8781 | -3760.87 | -3754.27 | -3808.87 |
| ADediting_1497517 | ENST00000379361.5 | chrX_23400285_+ | 8794 | -3754.57 | -3754.27 | -3808.87 |
| ADediting_1497518 | ENST00000379361.5 | chrX_23400294_+ | 8803 | -3754.17 | -3754.27 | -3808.87 |
| ADediting_1497519 | ENST00000379361.5 | chrX_23400305_+ | 8814 | -3754.27 | -3754.27 | -3808.87 |
| ADediting_1497520 | ENST00000379361.5 | chrX_23400337_+ | 8846 | -3753.97 | -3754.27 | -3808.87 |
| ADediting_1497521 | ENST00000379361.5 | chrX_23400353_+ | 8862 | -3757.97 | -3754.27 | -3808.87 |
| ADediting_1497522 | ENST00000379361.5 | chrX_23400363_+ | 8872 | -3753.97 | -3754.27 | -3808.87 |
| ADediting_1497523 | ENST00000379361.5 | chrX_23400373_+ | 8882 | -3754.27 | -3754.27 | -3808.87 |
| ADediting_1595133 | ENST00000379361.5 | chrX_23400377_+ | 8886 | -3753.57 | -3754.27 | -3808.87 |
| ADediting_1497524 | ENST00000379361.5 | chrX_23400390_+ | 8899 | -3754.27 | -3754.27 | -3808.87 |
| ADediting_1497525 | ENST00000379361.5 | chrX_23400398_+ | 8907 | -3753.77 | -3754.27 | -3808.87 |
| ADediting_1497526 | ENST00000379361.5 | chrX_23400399_+ | 8908 | -3754.27 | -3754.27 | -3808.87 |
| ADediting_1497527 | ENST00000379361.5 | chrX_23400410_+ | 8919 | -3760.87 | -3754.27 | -3808.87 |
| ADediting_1497528 | ENST00000379361.5 | chrX_23400413_+ | 8922 | -3758.67 | -3754.27 | -3808.87 |
| ADediting_1497529 | ENST00000379361.5 | chrX_23400419_+ | 8928 | -3753.57 | -3754.27 | -3808.87 |
| ADediting_1497530 | ENST00000379361.5 | chrX_23400423_+ | 8932 | -3753.37 | -3754.27 | -3808.87 |
| ADediting_1497531 | ENST00000379361.5 | chrX_23400428_+ | 8937 | -3753.37 | -3754.27 | -3808.87 |
| ADediting_1497532 | ENST00000379361.5 | chrX_23400435_+ | 8944 | -3759.67 | -3754.27 | -3808.87 |
| ADediting_1497533 | ENST00000379361.5 | chrX_23400459_+ | 8968 | -3753.57 | -3754.27 | -3808.87 |
| ADediting_1497534 | ENST00000379361.5 | chrX_23400461_+ | 8970 | -3753.37 | -3754.27 | -3808.87 |
| ADediting_1595134 | ENST00000379361.5 | chrX_23400875_+ | 9384 | -3753.37 | -3754.27 | -3808.87 |
| ADediting_1497535 | ENST00000379361.5 | chrX_23400887_+ | 9396 | -3753.87 | -3754.27 | -3808.87 |
| ADediting_1595135 | ENST00000379361.5 | chrX_23400899_+ | 9408 | -3753.57 | -3754.27 | -3808.87 |
| ADediting_1497536 | ENST00000379361.5 | chrX_23400925_+ | 9434 | -3760.47 | -3754.27 | -3808.87 |
| ADediting_1497537 | ENST00000379361.5 | chrX_23400930_+ | 9439 | -3753.87 | -3754.27 | -3808.87 |
| ADediting_1497538 | ENST00000379361.5 | chrX_23400935_+ | 9444 | -3753.97 | -3754.27 | -3808.87 |
| ADediting_1497539 | ENST00000379361.5 | chrX_23400936_+ | 9445 | -3753.27 | -3754.27 | -3808.87 |
| ADediting_1497540 | ENST00000379361.5 | chrX_23400949_+ | 9458 | -3760.47 | -3754.27 | -3808.87 |
| ADediting_1497541 | ENST00000379361.5 | chrX_23400985_+ | 9494 | -3753.97 | -3754.27 | -3808.87 |
| ADediting_1497542 | ENST00000379361.5 | chrX_23400995_+ | 9504 | -3754.27 | -3754.27 | -3808.87 |
| ADediting_1497543 | ENST00000379361.5 | chrX_23400997_+ | 9506 | -3753.57 | -3754.27 | -3808.87 |
| ADediting_1497544 | ENST00000379361.5 | chrX_23401008_+ | 9517 | -3753.87 | -3754.27 | -3808.87 |
| ADediting_1497545 | ENST00000379361.5 | chrX_23401064_+ | 9573 | -3753.97 | -3754.27 | -3808.87 |
| ADediting_1595136 | ENST00000379361.5 | chrX_23401078_+ | 9587 | -3753.87 | -3754.27 | -3808.87 |
| ADediting_1497546 | ENST00000379361.5 | chrX_23401086_+ | 9595 | -3757.77 | -3754.27 | -3808.87 |
| ADediting_1497547 | ENST00000379361.5 | chrX_23401095_+ | 9604 | -3760.87 | -3754.27 | -3808.87 |
| ADediting_1497548 | ENST00000379361.5 | chrX_23401110_+ | 9619 | -3754.27 | -3754.27 | -3808.87 |
| ADediting_1497549 | ENST00000379361.5 | chrX_23401118_+ | 9627 | -3753.67 | -3754.27 | -3808.87 |
| ADediting_1497550 | ENST00000379361.5 | chrX_23401122_+ | 9631 | -3758.17 | -3754.27 | -3808.87 |
| ADediting_1595137 | ENST00000379361.5 | chrX_23401139_+ | 9648 | -3753.97 | -3754.27 | -3808.87 |
| ADediting_1497551 | ENST00000379361.5 | chrX_23401141_+ | 9650 | -3753.97 | -3754.27 | -3808.87 |
| ADediting_1497552 | ENST00000379361.5 | chrX_23401153_+ | 9662 | -3754.27 | -3754.27 | -3808.87 |
| ADediting_1497553 | ENST00000379361.5 | chrX_23401726_+ | 10235 | -3760.87 | -3754.27 | -3808.87 |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
Top |
Relation with ADAR for PTCHD1 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| CER | ADediting_1497508 | chrX_23400211_+ | 2.64659445348756e-18 | 0.634948077467972 | 1.15454272607696e-12 | 0.538693325623286 | 0.024657076619457 | 0.183420200778345 |
| CER | ADediting_1497509 | chrX_23400220_+ | 9.40922160553511e-16 | 0.595314217370011 | 4.37471043107121e-14 | 0.566095772939884 | 0.0733348586403761 | 0.146648638847517 |
| CER | ADediting_1497510 | chrX_23400227_+ | 3.93083179096943e-16 | 0.601566548430726 | 3.89671731079964e-13 | 0.548066247032118 | 0.0886869157456383 | 0.139484058285475 |
| CER | ADediting_1497511 | chrX_23400228_+ | 2.27792423793981e-12 | 0.532678264155876 | 6.98798106209151e-11 | 0.500434543548682 | 0.0891279447836207 | 0.139293439096754 |
| CER | ADediting_1497512 | chrX_23400233_+ | 1.8484817058593e-08 | 0.43942214170636 | 2.4593408981112e-08 | 0.435951606982198 | 0.10942118510622 | 0.131236690128006 |
| DLPFC | ADediting_1497513 | chrX_23400258_+ | 0.012388126801559 | 0.14189488213912 | 0.873664344547988 | -0.00906736399210041 | 2.56129087819865e-25 | 0.54440546976533 |
| CER | ADediting_1497513 | chrX_23400258_+ | 3.74144786684131e-14 | 0.567344179178324 | 1.23767245704045e-11 | 0.5171601218355 | 0.611265668131496 | 0.0418316462196603 |
| CER | ADediting_1497514 | chrX_23400263_+ | 4.04235462228431e-13 | 0.547754306041528 | 2.84317514319181e-10 | 0.486176912916017 | 0.32676802220884 | 0.0806132646103304 |
| CER | ADediting_1497515 | chrX_23400271_+ | 3.51895018388657e-11 | 0.507172366175125 | 7.69710957321136e-10 | 0.475645149756658 | 0.0926419209860604 | 0.137800899452785 |
| DLPFC | ADediting_1497516 | chrX_23400272_+ | 0.102681880084229 | 0.0928654799796905 | 0.660253806767632 | -0.0250628135268288 | 1.17773144060974e-17 | 0.460220460600469 |
| CER | ADediting_1497516 | chrX_23400272_+ | 5.06482514283544e-18 | 0.630834693342065 | 1.58129243160746e-14 | 0.574127404356083 | 0.0211679277459116 | 0.188090955273081 |
| DLPFC | ADediting_1497517 | chrX_23400285_+ | 0.0654085180352562 | 0.104779517832598 | 0.863974337638606 | -0.00976939830817073 | 1.05256840579156e-14 | 0.420372766241441 |
| CER | ADediting_1497517 | chrX_23400285_+ | 1.64423618512078e-20 | 0.665151121598623 | 8.73766068858855e-13 | 0.541125711806909 | 0.461775158653717 | 0.0605394800351642 |
| CER | ADediting_1497518 | chrX_23400294_+ | 1.29673174791846e-05 | 0.347776752492888 | 0.000362948909928872 | 0.287372788793371 | 0.624132767118624 | 0.0403295548234672 |
| CER | ADediting_1497519 | chrX_23400305_+ | 2.72143409322131e-08 | 0.434711348746405 | 4.83773441096609e-09 | 0.455215877512842 | 0.117198306568509 | 0.128459868716444 |
| CER | ADediting_1497520 | chrX_23400337_+ | 1.43182552092919e-17 | 0.624118096510983 | 1.20886297651486e-11 | 0.517381545277016 | 0.0641902855579382 | 0.151515558351467 |
| CER | ADediting_1497521 | chrX_23400353_+ | 2.10905620791097e-11 | 0.512105987286481 | 3.38154267599337e-11 | 0.507559079383233 | 0.131194136397135 | 0.123803816174938 |
| CER | ADediting_1497522 | chrX_23400363_+ | 6.88391993588711e-16 | 0.597568381470035 | 3.51785849889758e-17 | 0.618174561054204 | 0.00291492874581089 | 0.241449406861202 |
| TCX | ADediting_1497522 | chrX_23400363_+ | 0.00431157515646608 | 0.231818028527516 | 8.4004220746322e-07 | 0.389454867559887 | 0.129683211868325 | -0.124287463412614 |
| CER | ADediting_1497526 | chrX_23400399_+ | 6.65671360324482e-08 | 0.423534857340767 | 9.13662205981678e-08 | 0.419479126192782 | 0.255151404571458 | 0.093489699162653 |
| CER | ADediting_1497527 | chrX_23400410_+ | 4.88525294437868e-14 | 0.565211349033603 | 7.54314173817947e-10 | 0.475862416723856 | 0.0178229697227953 | 0.193240041215954 |
| CER | ADediting_1497528 | chrX_23400413_+ | 1.23277377397945e-08 | 0.444280289564192 | 4.11047654930648e-06 | 0.365986022758462 | 0.162977164845563 | 0.114494583373818 |
| CER | ADediting_1497531 | chrX_23400428_+ | 5.61223906475233e-11 | 0.502603855857967 | 1.7912665794087e-10 | 0.490943663189866 | 0.136739631140742 | 0.122064496630151 |
| CER | ADediting_1497532 | chrX_23400435_+ | 7.63592655900027e-12 | 0.521668876641635 | 5.8641623706246e-12 | 0.524105816441518 | 0.00744839937761719 | 0.217696928113814 |
| DLPFC | ADediting_1497536 | chrX_23400925_+ | 0.00435664859811476 | 0.161520245791391 | 0.0628828716879531 | 0.105772735935997 | 1.8841134397708e-09 | 0.332773804376784 |
| CER | ADediting_1497536 | chrX_23400925_+ | 5.53009088681942e-17 | 0.61513522885371 | 1.02917643849258e-11 | 0.518890161891252 | 0.0355488939818265 | 0.171790684137851 |
| CER | ADediting_1497537 | chrX_23400930_+ | 1.34551232356908e-08 | 0.443237270120773 | 1.32626474452927e-05 | 0.347408365485855 | 0.969459438925396 | 0.00315242456573575 |
| CER | ADediting_1497538 | chrX_23400935_+ | 2.14160880358044e-11 | 0.511959514229849 | 3.01405515768563e-12 | 0.530164676009939 | 0.062875573574031 | 0.152261079740336 |
| CER | ADediting_1497539 | chrX_23400936_+ | 1.17891489860433e-17 | 0.625386683781941 | 2.92808655657193e-15 | 0.586974343248323 | 0.0234346203617345 | 0.184987957744481 |
| DLPFC | ADediting_1497540 | chrX_23400949_+ | 0.00787820210210186 | 0.150667590180078 | 0.103191886652868 | 0.0927285856648318 | 5.60320711699101e-09 | 0.323388526089845 |
| CER | ADediting_1497540 | chrX_23400949_+ | 2.63332196097938e-17 | 0.620103271465831 | 5.27357809319827e-13 | 0.545484251976491 | 0.0317228981886502 | 0.175478873891433 |
| CER | ADediting_1497541 | chrX_23400985_+ | 1.48683273489425e-11 | 0.515430285535975 | 1.15586520962387e-09 | 0.47124067043163 | 0.0949573562509647 | 0.136841857644175 |
| CER | ADediting_1497542 | chrX_23400995_+ | 6.98075376170296e-11 | 0.500444818175636 | 2.03305359726082e-07 | 0.408990814460968 | 0.335650703909801 | 0.0791505512603322 |
| CER | ADediting_1497543 | chrX_23400997_+ | 2.41024857237397e-06 | 0.374081818379985 | 0.000496875575792077 | 0.280941112557712 | 0.139641760605478 | 0.121175663492616 |
| CER | ADediting_1497544 | chrX_23401008_+ | 1.96730559980075e-18 | 0.636807502991012 | 5.82510630264964e-17 | 0.614783912073858 | 0.0152605066566806 | 0.197786825901851 |
| CER | ADediting_1497545 | chrX_23401064_+ | 7.24388092833767e-09 | 0.450543360526746 | 2.08267124228782e-06 | 0.376259703941052 | 0.778914364273241 | 0.0231121231830563 |
| DLPFC | ADediting_1497547 | chrX_23401095_+ | 0.066882234487516 | 0.104214432737334 | 0.785844103040372 | -0.0154938229940859 | 4.35506661645544e-22 | 0.51170959646479 |
| CER | ADediting_1497547 | chrX_23401095_+ | 3.45457283068828e-21 | 0.673770116263312 | 1.82043129545176e-13 | 0.554464528086548 | 0.523873062922163 | 0.0524452932314464 |
| CER | ADediting_1497548 | chrX_23401110_+ | 6.97429549490123e-16 | 0.597474649933913 | 3.59103623110158e-13 | 0.548759601414971 | 0.0674965282479233 | 0.149694385080386 |
| CER | ADediting_1497549 | chrX_23401118_+ | 9.0701454348486e-07 | 0.388362082878263 | 0.000181211110481987 | 0.301079825152998 | 0.254303518664765 | 0.0936559693423843 |
| CER | ADediting_1497550 | chrX_23401122_+ | 6.07761265164709e-22 | 0.683039567517495 | 7.54361395139372e-15 | 0.579834797437985 | 0.314356155333212 | 0.0827006495075561 |
| DLPFC | ADediting_1497551 | chrX_23401141_+ | 0.0814998419416498 | 0.0990983981622182 | 0.997790099395961 | 0.000157946637446393 | 4.18172232202332e-08 | 0.305185770199443 |
| CER | ADediting_1497551 | chrX_23401141_+ | 2.72190032892049e-15 | 0.587518031551061 | 2.07920841630934e-12 | 0.533493145423275 | 0.0728467749490226 | 0.146895571494383 |
| DLPFC | ADediting_1497552 | chrX_23401153_+ | 0.000385972427044905 | 0.200359119456022 | 0.0177929354952012 | 0.134532261063911 | 1.21562761216215e-08 | 0.316518537477222 |
| CER | ADediting_1497552 | chrX_23401153_+ | 1.72353642366937e-16 | 0.607349720654307 | 1.11332040888824e-16 | 0.610368266536357 | 0.0234498512542727 | 0.184967997054579 |
| CER | ADediting_1595132 | chrX_23400266_+ | 0.000185596809485221 | 0.300619082679553 | 0.000158241476189772 | 0.303676889692111 | 0.481228413896499 | 0.0579445444819493 |
| CER | ADediting_1595135 | chrX_23400899_+ | 0.000126199927681126 | 0.307958879672661 | 8.39629536893966e-05 | 0.315509695737086 | 0.55464387835598 | 0.0486180766042283 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 1.50700962378702e-39 | 0.656166401549722 | 2.25862687188969e-19 | 0.481213180099664 | 2.80767709223849e-10 | 0.348445142699292 |
| AC | 1.05191713857573e-55 | 0.794752837348134 | 9.85564379278482e-38 | 0.697306560153867 | 7.82815604218903e-13 | 0.432755329844975 |
| PCC | 7.95505232347896e-27 | 0.67571076965253 | 1.69666003033843e-21 | 0.617908188896228 | 3.81965540819206e-05 | 0.293321702774297 |
| CER | 1.33597153597638e-49 | 0.879569444653636 | 3.68550124862175e-34 | 0.796557764655517 | 0.0166597162998679 | 0.195228464588858 |
| TCX | 5.13642208935967e-17 | 0.615633656081744 | 5.54533715670398e-16 | 0.599117850637418 | 0.884945512946963 | 0.0119141843084609 |
| FP | 1.16517484308962e-21 | 0.637152496008928 | 6.77669508800996e-24 | 0.662922317778622 | 4.34195612665855e-06 | 0.336625556405001 |
| IFG | 5.4104237563241e-05 | 0.717511654678788 | 3.56684300210727e-07 | 0.826487111435983 | 0.033774617348459 | 0.425898257435663 |
| PG | 4.87868787296247e-37 | 0.765230321385858 | 7.98713932069531e-29 | 0.70104508695137 | 0.512628856488019 | 0.048306193493905 |
| STG | 9.25097316426103e-12 | 0.659208178276299 | 2.41718094139728e-08 | 0.563379840231786 | 0.0513629212599035 | 0.213334061640922 |
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Relation with AD stages for PTCHD1 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| CER | ADediting_1497508 | chrX_23400211_+ | 0.00154029659584774 | 0.301140457782467 |
| CER | ADediting_1497510 | chrX_23400227_+ | 0.00103169604727869 | 0.311514087429245 |
| CER | ADediting_1497512 | chrX_23400233_+ | 0.000403042275919721 | 0.334483445324345 |
| CER | ADediting_1497522 | chrX_23400363_+ | 8.10573759743479e-05 | 0.370002022571761 |
| CER | ADediting_1497531 | chrX_23400428_+ | 0.000114214660491595 | 0.362750517358583 |
| CER | ADediting_1497539 | chrX_23400936_+ | 0.00010336541688584 | 0.364878952823421 |
| CER | ADediting_1497540 | chrX_23400949_+ | 8.08972439056454e-06 | 0.414752878885353 |
| CER | ADediting_1497544 | chrX_23401008_+ | 0.00123131084537828 | 0.306981839940435 |
| CER | ADediting_1497552 | chrX_23401153_+ | 0.00101730368557465 | 0.311871036058281 |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| CER | 0.00101817531755149 | 0.311849287839633 |
| TCX | 1.11405546165033e-06 | 0.452544389677909 |
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RelatedDrugs for PTCHD1 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PTCHD1 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
| PTCHD1 | C1510586 | Autism Spectrum Disorders | 2 | CTD_human |
| PTCHD1 | C0004352 | Autistic Disorder | 1 | CTD_human |
| PTCHD1 | C0020796 | Profound Mental Retardation | 1 | CTD_human |
| PTCHD1 | C0025363 | Mental Retardation, Psychosocial | 1 | CTD_human |
| PTCHD1 | C0917816 | Mental deficiency | 1 | CTD_human |
| PTCHD1 | C1136249 | Mental Retardation, X-Linked | 1 | CTD_human |
| PTCHD1 | C3714756 | Intellectual Disability | 1 | CTD_human;GENOMICS_ENGLAND |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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