ADeditome: functional annotation of RNA A-to-I editing in AD

Gene summary for C9orf85

Gene summary

Gene information	Gene symbol	C9orf85
	Gene ID	138241
	Gene name	chromosome 9 open reading frame 85
	Synonyms	-
	Cytomap	9q21.13
	Type of gene	protein-coding
	Description	uncharacterized protein C9orf85
	Modification date	20200313
	UniProtAcc	Q96MD7,
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for C9orf85

RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).

RNA editing frequencies across three data sets.

The number of RNA A-to-I editing events in different types of transcripts (# event, percentage).

RNA A-to-I editing events in AD.

ADediting_1473187(71915361, +), ADediting_1473188(71915364, +), ADediting_1473189(71920031, +), ADediting_1473190(71920034, +), ADediting_1473191(71920117, +), ADediting_1473192(71920123, +), ADediting_1473193(71922074, +), ADediting_1473194(71922191, +), ADediting_1473195(71922883, +), ADediting_1473196(71922942, +), ADediting_1473197(71923051, +), ADediting_1473198(71923062, +), ADediting_1473199(71923080, +), ADediting_1473200(71923320, +), ADediting_1473201(71923328, +), ADediting_1473202(71923348, +), ADediting_1473203(71923369, +), ADediting_1473204(71923398, +), ADediting_1473205(71923408, +), ADediting_1473206(71923440, +), ADediting_1473207(71923468, +), ADediting_1473208(71923515, +), ADediting_1473209(71923529, +), ADediting_1473210(71923530, +), ADediting_1473211(71923533, +), ADediting_1473212(71923548, +), ADediting_1473213(71925397, +), ADediting_1473214(71928053, +), ADediting_1473215(71928112, +), ADediting_1473216(71928126, +), ADediting_1473217(71930546, +), ADediting_1473218(71930586, +), ADediting_1473219(71935564, +), ADediting_1473220(71936979, +), ADediting_1473221(71948634, +), ADediting_1473222(71952426, +), ADediting_1473223(71952434, +), ADediting_1473224(71952573, +), ADediting_1473225(71953865, +), ADediting_1473226(71953917, +), ADediting_1473227(71953920, +), ADediting_1473228(71953953, +), ADediting_1473229(71953957, +), ADediting_1473230(71953973, +), ADediting_1473231(71954051, +), ADediting_1473232(71954054, +), ADediting_1473233(71954068, +), ADediting_1473234(71960957, +), ADediting_1473235(71960974, +), ADediting_1473236(71960976, +), ADediting_1473237(71961012, +), ADediting_1473238(71961030, +), ADediting_1473239(71961112, +), ADediting_1473240(71961132, +), ADediting_1473241(71961195, +), ADediting_1473242(71961203, +), ADediting_1473243(71961290, +), ADediting_1473244(71961378, +), ADediting_1473245(71961462, +), ADediting_1473246(71962933, +), ADediting_1473247(71970975, +), ADediting_1473248(71971875, +), ADediting_1473249(71971876, +), ADediting_1473250(71971906, +), ADediting_1473251(71972308, +), ADediting_1473252(71972316, +), ADediting_1473253(71972324, +), ADediting_1473254(71972339, +), ADediting_1473255(71972340, +), ADediting_1473256(71972354, +), ADediting_1473257(71972459, +), ADediting_1473258(71972468, +), ADediting_1473259(71972521, +), ADediting_1473260(71972533, +), ADediting_1473261(71972870, +), ADediting_1473262(71972872, +), ADediting_1473263(71972880, +), ADediting_1473264(71972888, +), ADediting_1473265(71972889, +), ADediting_1473266(71972895, +), ADediting_1473267(71972911, +), ADediting_1473268(71972914, +), ADediting_1473269(71972924, +), ADediting_1473270(71972934, +), ADediting_1473271(71972937, +), ADediting_1473272(71972943, +), ADediting_1473273(71972945, +), ADediting_1473274(71972948, +), ADediting_1473275(71972957, +), ADediting_1473276(71972958, +), ADediting_1473277(71972960, +), ADediting_1473278(71972973, +), ADediting_1473279(71972979, +), ADediting_1473280(71972982, +), ADediting_1473281(71972983, +), ADediting_1473282(71972984, +), ADediting_1473283(71972985, +), ADediting_1473284(71972991, +), ADediting_1473285(71972994, +), ADediting_1473286(71972998, +), ADediting_1473287(71973024, +), ADediting_1473288(71973025, +), ADediting_1473289(71973030, +), ADediting_1473290(71973034, +), ADediting_1473291(71973038, +), ADediting_1473292(71973051, +), ADediting_1473293(71973054, +), ADediting_1473294(71973065, +), ADediting_1473295(71973066, +), ADediting_1473296(71973086, +), ADediting_1473297(71973108, +), ADediting_1473298(71974013, +), ADediting_1473299(71974026, +), ADediting_1473300(71974027, +), ADediting_1473301(71974052, +), ADediting_1473302(71974061, +), ADediting_1473303(71974066, +), ADediting_1473304(71974110, +), ADediting_1473305(71974292, +), ADediting_1473306(71974299, +), ADediting_1473307(71974323, +), ADediting_1473308(71974330, +), ADediting_1473309(71974361, +), ADediting_1473310(71974373, +), ADediting_1473311(71974401, +), ADediting_1473312(71974410, +), ADediting_1473313(71974424, +), ADediting_1473314(71974427, +), ADediting_1473315(71974434, +), ADediting_1473316(71974435, +), ADediting_1473317(71974441, +), ADediting_1473318(71974444, +), ADediting_1473319(71974465, +), ADediting_1473320(71974477, +), ADediting_1473321(71974478, +), ADediting_1473322(71974482, +), ADediting_1473323(71974486, +), ADediting_1473324(71974490, +), ADediting_1473325(71974506, +), ADediting_1473326(71975185, +), ADediting_1473327(71975193, +), ADediting_1473328(71975215, +), ADediting_1473329(71975216, +), ADediting_1473330(71975220, +), ADediting_1473331(71975224, +), ADediting_1473332(71975229, +), ADediting_1473333(71975254, +), ADediting_1473334(71975281, +), ADediting_1473335(71975282, +), ADediting_1473336(71975310, +), ADediting_1473337(71975321, +), ADediting_1473338(71975373, +), ADediting_1473339(71975374, +), ADediting_1473340(71975390, +), ADediting_1473341(71975391, +), ADediting_1473342(71975429, +), ADediting_1473343(71975599, +), ADediting_1473344(71975613, +), ADediting_1473345(71975618, +), ADediting_1473346(71975651, +), ADediting_1473347(71975685, +), ADediting_1473348(71975711, +), ADediting_1473349(71975712, +), ADediting_1473350(71975721, +), ADediting_1473351(71975744, +), ADediting_1473352(71975747, +), ADediting_1473353(71975758, +), ADediting_1473354(71975764, +), ADediting_1473355(71975781, +), ADediting_1473356(71975782, +), ADediting_1473357(71975786, +), ADediting_1473358(71975815, +), ADediting_1473359(71976541, +), ADediting_1473360(71978153, +), ADediting_1473361(71978179, +), ADediting_1473362(71978362, +), ADediting_1473363(71978819, +), ADediting_1473364(71978825, +), ADediting_1473365(71982735, +), ADediting_1473366(71982765, +), ADediting_1473367(71982775, +), ADediting_1473368(71982816, +), ADediting_1473369(71982819, +), ADediting_1473370(71982836, +), ADediting_1473371(71982845, +), ADediting_1473372(71983135, +), ADediting_1473373(71983176, +), ADediting_1473374(71983179, +), ADediting_1473375(71983182, +), ADediting_1473376(71983185, +), ADediting_1473377(71983196, +), ADediting_1473378(71983245, +), ADediting_1473379(71983255, +), ADediting_1473380(71983268, +), ADediting_1593978(71912726, +), ADediting_1593979(71912729, +), ADediting_1593980(71912763, +), ADediting_1593981(71912764, +), ADediting_1593982(71972894, +), ADediting_1593983(71972929, +), ADediting_1593984(71973095, +), ADediting_1593985(71973127, +), ADediting_1593986(71973983, +), ADediting_1593987(71974305, +), ADediting_1593988(71974344, +), ADediting_1593989(71974513, +), ADediting_1593990(71975293, +), ADediting_1593991(71975297, +), ADediting_1593992(71975326, +), ADediting_1593993(71975600, +), ADediting_1593994(71975647, +), ADediting_1593995(71975653, +), ADediting_1593996(71975662, +), ADediting_1593997(71975672, +), ADediting_1673530(71923050, +), ADediting_1673531(71961013, +), ADediting_1673532(71961481, +), ADediting_1673533(71961983, +), ADediting_1673534(71972968, +), ADediting_1673535(71975656, +), ADediting_1673536(71975657, +), ADediting_1673537(71978802, +),

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RNA editing positional annotations for C9orf85 using Annovar

Protein coding RNA editing(s).

ADeditome ID	Position	Variant type	ENST	NTchange	AAchange	SIFT_score	Polyphen2_HVAR_score	PROVEAN_pred
ADediting_1473365	chr9_71982735_+	synonymous SNV	ENST00000377031.7	c.A402G	p.S134S	.	.	.
ADediting_1473366	chr9_71982765_+	synonymous SNV	ENST00000377031.7	c.A432G	p.V144V	.	.	.
ADediting_1473367	chr9_71982775_+	nonsynonymous SNV	ENST00000377031.7	c.A442G	p.T148A	0.413	.	-0.43
ADediting_1473368	chr9_71982816_+	synonymous SNV	ENST00000377031.7	c.A483G	p.L161L	.	.	.
ADediting_1473369	chr9_71982819_+	synonymous SNV	ENST00000377031.7	c.A486G	p.V162V	.	.	.
ADediting_1473370	chr9_71982836_+	nonsynonymous SNV	ENST00000377031.7	c.A503G	p.Y168C	0.003	.	-0.61
ADediting_1473371	chr9_71982845_+	nonsynonymous SNV	ENST00000377031.7	c.A512G	p.Q171R	0.0	.	-0.37

Gene structure information of RNA editing(s).

ADeditome ID	Position	Variant type
ADediting_1473187	chr9_71915361_+	intronic
ADediting_1473188	chr9_71915364_+	intronic
ADediting_1473189	chr9_71920031_+	intronic
ADediting_1473190	chr9_71920034_+	intronic
ADediting_1473191	chr9_71920117_+	intronic
ADediting_1473192	chr9_71920123_+	intronic
ADediting_1473193	chr9_71922074_+	intronic
ADediting_1473194	chr9_71922191_+	intronic
ADediting_1473195	chr9_71922883_+	intronic
ADediting_1473196	chr9_71922942_+	intronic
ADediting_1473197	chr9_71923051_+	intronic
ADediting_1473198	chr9_71923062_+	intronic
ADediting_1473199	chr9_71923080_+	intronic
ADediting_1473200	chr9_71923320_+	intronic
ADediting_1473201	chr9_71923328_+	intronic
ADediting_1473202	chr9_71923348_+	intronic
ADediting_1473203	chr9_71923369_+	intronic
ADediting_1473204	chr9_71923398_+	intronic
ADediting_1473205	chr9_71923408_+	intronic
ADediting_1473206	chr9_71923440_+	intronic
ADediting_1473207	chr9_71923468_+	intronic
ADediting_1473208	chr9_71923515_+	intronic
ADediting_1473209	chr9_71923529_+	intronic
ADediting_1473210	chr9_71923530_+	intronic
ADediting_1473211	chr9_71923533_+	intronic
ADediting_1473212	chr9_71923548_+	intronic
ADediting_1473213	chr9_71925397_+	intronic
ADediting_1473214	chr9_71928053_+	intronic
ADediting_1473215	chr9_71928112_+	intronic
ADediting_1473216	chr9_71928126_+	intronic
ADediting_1473217	chr9_71930546_+	intronic
ADediting_1473218	chr9_71930586_+	intronic
ADediting_1473219	chr9_71935564_+	intronic
ADediting_1473220	chr9_71936979_+	intronic
ADediting_1473221	chr9_71948634_+	intronic
ADediting_1473222	chr9_71952426_+	intronic
ADediting_1473223	chr9_71952434_+	intronic
ADediting_1473224	chr9_71952573_+	intronic
ADediting_1473225	chr9_71953865_+	intronic
ADediting_1473226	chr9_71953917_+	intronic
ADediting_1473227	chr9_71953920_+	intronic
ADediting_1473228	chr9_71953953_+	intronic
ADediting_1473229	chr9_71953957_+	intronic
ADediting_1473230	chr9_71953973_+	intronic
ADediting_1473231	chr9_71954051_+	intronic
ADediting_1473232	chr9_71954054_+	intronic
ADediting_1473233	chr9_71954068_+	intronic
ADediting_1473234	chr9_71960957_+	intronic
ADediting_1473235	chr9_71960974_+	intronic
ADediting_1473236	chr9_71960976_+	intronic
ADediting_1473237	chr9_71961012_+	intronic
ADediting_1473238	chr9_71961030_+	intronic
ADediting_1473239	chr9_71961112_+	intronic
ADediting_1473240	chr9_71961132_+	intronic
ADediting_1473241	chr9_71961195_+	intronic
ADediting_1473242	chr9_71961203_+	intronic
ADediting_1473243	chr9_71961290_+	intronic
ADediting_1473244	chr9_71961378_+	intronic
ADediting_1473245	chr9_71961462_+	intronic
ADediting_1473246	chr9_71962933_+	intronic
ADediting_1473247	chr9_71970975_+	intronic
ADediting_1473248	chr9_71971875_+	intronic
ADediting_1473249	chr9_71971876_+	intronic
ADediting_1473250	chr9_71971906_+	intronic
ADediting_1473251	chr9_71972308_+	intronic
ADediting_1473252	chr9_71972316_+	intronic
ADediting_1473253	chr9_71972324_+	intronic
ADediting_1473254	chr9_71972339_+	intronic
ADediting_1473255	chr9_71972340_+	intronic
ADediting_1473256	chr9_71972354_+	intronic
ADediting_1473257	chr9_71972459_+	intronic
ADediting_1473258	chr9_71972468_+	intronic
ADediting_1473259	chr9_71972521_+	intronic
ADediting_1473260	chr9_71972533_+	intronic
ADediting_1473261	chr9_71972870_+	UTR3
ADediting_1473262	chr9_71972872_+	UTR3
ADediting_1473263	chr9_71972880_+	UTR3
ADediting_1473264	chr9_71972888_+	UTR3
ADediting_1473265	chr9_71972889_+	UTR3
ADediting_1473266	chr9_71972895_+	UTR3
ADediting_1473267	chr9_71972911_+	UTR3
ADediting_1473268	chr9_71972914_+	UTR3
ADediting_1473269	chr9_71972924_+	UTR3
ADediting_1473270	chr9_71972934_+	UTR3
ADediting_1473271	chr9_71972937_+	UTR3
ADediting_1473272	chr9_71972943_+	UTR3
ADediting_1473273	chr9_71972945_+	UTR3
ADediting_1473274	chr9_71972948_+	UTR3
ADediting_1473275	chr9_71972957_+	UTR3
ADediting_1473276	chr9_71972958_+	UTR3
ADediting_1473277	chr9_71972960_+	UTR3
ADediting_1473278	chr9_71972973_+	UTR3
ADediting_1473279	chr9_71972979_+	UTR3
ADediting_1473280	chr9_71972982_+	UTR3
ADediting_1473281	chr9_71972983_+	UTR3
ADediting_1473282	chr9_71972984_+	UTR3
ADediting_1473283	chr9_71972985_+	UTR3
ADediting_1473284	chr9_71972991_+	UTR3
ADediting_1473285	chr9_71972994_+	UTR3
ADediting_1473286	chr9_71972998_+	UTR3
ADediting_1473287	chr9_71973024_+	UTR3
ADediting_1473288	chr9_71973025_+	UTR3
ADediting_1473289	chr9_71973030_+	UTR3
ADediting_1473290	chr9_71973034_+	UTR3
ADediting_1473291	chr9_71973038_+	UTR3
ADediting_1473292	chr9_71973051_+	UTR3
ADediting_1473293	chr9_71973054_+	UTR3
ADediting_1473294	chr9_71973065_+	UTR3
ADediting_1473295	chr9_71973066_+	UTR3
ADediting_1473296	chr9_71973086_+	UTR3
ADediting_1473297	chr9_71973108_+	UTR3
ADediting_1473298	chr9_71974013_+	intronic
ADediting_1473299	chr9_71974026_+	intronic
ADediting_1473300	chr9_71974027_+	intronic
ADediting_1473301	chr9_71974052_+	intronic
ADediting_1473302	chr9_71974061_+	intronic
ADediting_1473303	chr9_71974066_+	intronic
ADediting_1473304	chr9_71974110_+	intronic
ADediting_1473305	chr9_71974292_+	intronic
ADediting_1473306	chr9_71974299_+	intronic
ADediting_1473307	chr9_71974323_+	intronic
ADediting_1473308	chr9_71974330_+	intronic
ADediting_1473309	chr9_71974361_+	intronic
ADediting_1473310	chr9_71974373_+	intronic
ADediting_1473311	chr9_71974401_+	intronic
ADediting_1473312	chr9_71974410_+	intronic
ADediting_1473313	chr9_71974424_+	intronic
ADediting_1473314	chr9_71974427_+	intronic
ADediting_1473315	chr9_71974434_+	intronic
ADediting_1473316	chr9_71974435_+	intronic
ADediting_1473317	chr9_71974441_+	intronic
ADediting_1473318	chr9_71974444_+	intronic
ADediting_1473319	chr9_71974465_+	intronic
ADediting_1473320	chr9_71974477_+	intronic
ADediting_1473321	chr9_71974478_+	intronic
ADediting_1473322	chr9_71974482_+	intronic
ADediting_1473323	chr9_71974486_+	intronic
ADediting_1473324	chr9_71974490_+	intronic
ADediting_1473325	chr9_71974506_+	intronic
ADediting_1473326	chr9_71975185_+	intronic
ADediting_1473327	chr9_71975193_+	intronic
ADediting_1473328	chr9_71975215_+	intronic
ADediting_1473329	chr9_71975216_+	intronic
ADediting_1473330	chr9_71975220_+	intronic
ADediting_1473331	chr9_71975224_+	intronic
ADediting_1473332	chr9_71975229_+	intronic
ADediting_1473333	chr9_71975254_+	intronic
ADediting_1473334	chr9_71975281_+	intronic
ADediting_1473335	chr9_71975282_+	intronic
ADediting_1473336	chr9_71975310_+	intronic
ADediting_1473337	chr9_71975321_+	intronic
ADediting_1473338	chr9_71975373_+	intronic
ADediting_1473339	chr9_71975374_+	intronic
ADediting_1473340	chr9_71975390_+	intronic
ADediting_1473341	chr9_71975391_+	intronic
ADediting_1473342	chr9_71975429_+	intronic
ADediting_1473343	chr9_71975599_+	intronic
ADediting_1473344	chr9_71975613_+	intronic
ADediting_1473345	chr9_71975618_+	intronic
ADediting_1473346	chr9_71975651_+	intronic
ADediting_1473347	chr9_71975685_+	intronic
ADediting_1473348	chr9_71975711_+	intronic
ADediting_1473349	chr9_71975712_+	intronic
ADediting_1473350	chr9_71975721_+	intronic
ADediting_1473351	chr9_71975744_+	intronic
ADediting_1473352	chr9_71975747_+	intronic
ADediting_1473353	chr9_71975758_+	intronic
ADediting_1473354	chr9_71975764_+	intronic
ADediting_1473355	chr9_71975781_+	intronic
ADediting_1473356	chr9_71975782_+	intronic
ADediting_1473357	chr9_71975786_+	intronic
ADediting_1473358	chr9_71975815_+	intronic
ADediting_1473359	chr9_71976541_+	intronic
ADediting_1473360	chr9_71978153_+	intronic
ADediting_1473361	chr9_71978179_+	intronic
ADediting_1473362	chr9_71978362_+	intronic
ADediting_1473363	chr9_71978819_+	intronic
ADediting_1473364	chr9_71978825_+	intronic
ADediting_1473365	chr9_71982735_+	exonic
ADediting_1473366	chr9_71982765_+	exonic
ADediting_1473367	chr9_71982775_+	exonic
ADediting_1473368	chr9_71982816_+	exonic
ADediting_1473369	chr9_71982819_+	exonic
ADediting_1473370	chr9_71982836_+	exonic
ADediting_1473371	chr9_71982845_+	exonic
ADediting_1473372	chr9_71983135_+	UTR3
ADediting_1473373	chr9_71983176_+	UTR3
ADediting_1473374	chr9_71983179_+	UTR3
ADediting_1473375	chr9_71983182_+	UTR3
ADediting_1473376	chr9_71983185_+	UTR3
ADediting_1473377	chr9_71983196_+	UTR3
ADediting_1473378	chr9_71983245_+	UTR3
ADediting_1473379	chr9_71983255_+	UTR3
ADediting_1473380	chr9_71983268_+	UTR3
ADediting_1593978	chr9_71912726_+	intronic
ADediting_1593979	chr9_71912729_+	intronic
ADediting_1593980	chr9_71912763_+	intronic
ADediting_1593981	chr9_71912764_+	intronic
ADediting_1593982	chr9_71972894_+	UTR3
ADediting_1593983	chr9_71972929_+	UTR3
ADediting_1593984	chr9_71973095_+	UTR3
ADediting_1593985	chr9_71973127_+	UTR3
ADediting_1593986	chr9_71973983_+	intronic
ADediting_1593987	chr9_71974305_+	intronic
ADediting_1593988	chr9_71974344_+	intronic
ADediting_1593989	chr9_71974513_+	intronic
ADediting_1593990	chr9_71975293_+	intronic
ADediting_1593991	chr9_71975297_+	intronic
ADediting_1593992	chr9_71975326_+	intronic
ADediting_1593993	chr9_71975600_+	intronic
ADediting_1593994	chr9_71975647_+	intronic
ADediting_1593995	chr9_71975653_+	intronic
ADediting_1593996	chr9_71975662_+	intronic
ADediting_1593997	chr9_71975672_+	intronic
ADediting_1673530	chr9_71923050_+	intronic
ADediting_1673531	chr9_71961013_+	intronic
ADediting_1673532	chr9_71961481_+	intronic
ADediting_1673533	chr9_71961983_+	intronic
ADediting_1673534	chr9_71972968_+	UTR3
ADediting_1673535	chr9_71975656_+	intronic
ADediting_1673536	chr9_71975657_+	intronic
ADediting_1673537	chr9_71978802_+	intronic

Repat-regional RNA editing(s).

ADeditome ID	Position	Repeat family	Repeat sub family	Repeat name
ADediting_1473187	chr9_71915361_+	SINE	Alu	Name=AluSz
ADediting_1473188	chr9_71915364_+	SINE	Alu	Name=AluSz
ADediting_1473189	chr9_71920031_+	SINE	Alu	Name=AluSc
ADediting_1473190	chr9_71920034_+	SINE	Alu	Name=AluSc
ADediting_1473191	chr9_71920117_+	SINE	Alu	Name=AluSc
ADediting_1473192	chr9_71920123_+	SINE	Alu	Name=AluSc
ADediting_1473193	chr9_71922074_+	SINE	Alu	Name=AluSg4
ADediting_1473194	chr9_71922191_+	SINE	Alu	Name=AluSg4
ADediting_1473195	chr9_71922883_+	SINE	Alu	Name=AluSx3
ADediting_1473196	chr9_71922942_+	SINE	Alu	Name=AluSx3
ADediting_1473197	chr9_71923051_+	SINE	Alu	Name=AluSx3
ADediting_1473198	chr9_71923062_+	SINE	Alu	Name=AluSx3
ADediting_1473199	chr9_71923080_+	SINE	Alu	Name=AluSx3
ADediting_1473200	chr9_71923320_+	SINE	Alu	Name=AluSx
ADediting_1473201	chr9_71923328_+	SINE	Alu	Name=AluSx
ADediting_1473202	chr9_71923348_+	SINE	Alu	Name=AluSx
ADediting_1473203	chr9_71923369_+	SINE	Alu	Name=AluSx
ADediting_1473204	chr9_71923398_+	SINE	Alu	Name=AluSx
ADediting_1473205	chr9_71923408_+	SINE	Alu	Name=AluSx
ADediting_1473206	chr9_71923440_+	SINE	Alu	Name=AluSx
ADediting_1473207	chr9_71923468_+	SINE	Alu	Name=AluSx
ADediting_1473208	chr9_71923515_+	SINE	Alu	Name=AluSx
ADediting_1473209	chr9_71923529_+	SINE	Alu	Name=AluSx
ADediting_1473210	chr9_71923530_+	SINE	Alu	Name=AluSx
ADediting_1473211	chr9_71923533_+	SINE	Alu	Name=AluSx
ADediting_1473212	chr9_71923548_+	SINE	Alu	Name=AluSx
ADediting_1473213	chr9_71925397_+	SINE	Alu	Name=AluSz
ADediting_1473214	chr9_71928053_+	SINE	Alu	Name=AluSz
ADediting_1473215	chr9_71928112_+	SINE	Alu	Name=AluSz
ADediting_1473216	chr9_71928126_+	SINE	Alu	Name=AluSz
ADediting_1473217	chr9_71930546_+	SINE	Alu	Name=AluJb
ADediting_1473218	chr9_71930586_+	SINE	Alu	Name=AluJb
ADediting_1473219	chr9_71935564_+	SINE	Alu	Name=FLAM_C
ADediting_1473220	chr9_71936979_+	SINE	Alu	Name=AluJb
ADediting_1473221	chr9_71948634_+	SINE	Alu	Name=AluSz
ADediting_1473222	chr9_71952426_+	SINE	Alu	Name=AluY
ADediting_1473223	chr9_71952434_+	SINE	Alu	Name=AluY
ADediting_1473224	chr9_71952573_+	SINE	Alu	Name=AluY
ADediting_1473225	chr9_71953865_+	SINE	Alu	Name=AluJb
ADediting_1473226	chr9_71953917_+	SINE	Alu	Name=AluJb
ADediting_1473227	chr9_71953920_+	SINE	Alu	Name=AluJb
ADediting_1473228	chr9_71953953_+	SINE	Alu	Name=AluJb
ADediting_1473229	chr9_71953957_+	SINE	Alu	Name=AluJb
ADediting_1473230	chr9_71953973_+	SINE	Alu	Name=AluJb
ADediting_1473231	chr9_71954051_+	SINE	Alu	Name=AluJb
ADediting_1473232	chr9_71954054_+	SINE	Alu	Name=AluJb
ADediting_1473233	chr9_71954068_+	SINE	Alu	Name=AluJb
ADediting_1473234	chr9_71960957_+	SINE	Alu	Name=AluSp
ADediting_1473235	chr9_71960974_+	SINE	Alu	Name=AluSp
ADediting_1473236	chr9_71960976_+	SINE	Alu	Name=AluSp
ADediting_1473237	chr9_71961012_+	SINE	Alu	Name=AluSp
ADediting_1473238	chr9_71961030_+	SINE	Alu	Name=AluSp
ADediting_1473239	chr9_71961112_+	SINE	Alu	Name=AluSp
ADediting_1473240	chr9_71961132_+	SINE	Alu	Name=AluSp
ADediting_1473241	chr9_71961195_+	SINE	Alu	Name=AluSp
ADediting_1473242	chr9_71961203_+	SINE	Alu	Name=AluSp
ADediting_1473243	chr9_71961290_+	SINE	Alu	Name=AluSg
ADediting_1473244	chr9_71961378_+	SINE	Alu	Name=AluSg
ADediting_1473245	chr9_71961462_+	SINE	Alu	Name=AluSg
ADediting_1473246	chr9_71962933_+	SINE	Alu	Name=AluSq2
ADediting_1473247	chr9_71970975_+	SINE	Alu	Name=AluSx
ADediting_1473248	chr9_71971875_+	SINE	Alu	Name=AluSg4
ADediting_1473249	chr9_71971876_+	SINE	Alu	Name=AluSg4
ADediting_1473250	chr9_71971906_+	SINE	Alu	Name=AluSg4
ADediting_1473251	chr9_71972308_+	SINE	Alu	Name=AluSq2
ADediting_1473252	chr9_71972316_+	SINE	Alu	Name=AluSq2
ADediting_1473253	chr9_71972324_+	SINE	Alu	Name=AluSq2
ADediting_1473254	chr9_71972339_+	SINE	Alu	Name=AluSq2
ADediting_1473255	chr9_71972340_+	SINE	Alu	Name=AluSq2
ADediting_1473256	chr9_71972354_+	SINE	Alu	Name=AluSq2
ADediting_1473257	chr9_71972459_+	SINE	Alu	Name=AluSq2
ADediting_1473258	chr9_71972468_+	SINE	Alu	Name=AluSq2
ADediting_1473259	chr9_71972521_+	SINE	Alu	Name=AluSq2
ADediting_1473260	chr9_71972533_+	SINE	Alu	Name=AluSq2
ADediting_1473261	chr9_71972870_+	SINE	Alu	Name=AluSx
ADediting_1473262	chr9_71972872_+	SINE	Alu	Name=AluSx
ADediting_1473263	chr9_71972880_+	SINE	Alu	Name=AluSx
ADediting_1473264	chr9_71972888_+	SINE	Alu	Name=AluSx
ADediting_1473265	chr9_71972889_+	SINE	Alu	Name=AluSx
ADediting_1473266	chr9_71972895_+	SINE	Alu	Name=AluSx
ADediting_1473267	chr9_71972911_+	SINE	Alu	Name=AluSx
ADediting_1473268	chr9_71972914_+	SINE	Alu	Name=AluSx
ADediting_1473269	chr9_71972924_+	SINE	Alu	Name=AluSx
ADediting_1473270	chr9_71972934_+	SINE	Alu	Name=AluSx
ADediting_1473271	chr9_71972937_+	SINE	Alu	Name=AluSx
ADediting_1473272	chr9_71972943_+	SINE	Alu	Name=AluSx
ADediting_1473273	chr9_71972945_+	SINE	Alu	Name=AluSx
ADediting_1473274	chr9_71972948_+	SINE	Alu	Name=AluSx
ADediting_1473275	chr9_71972957_+	SINE	Alu	Name=AluSx
ADediting_1473276	chr9_71972958_+	SINE	Alu	Name=AluSx
ADediting_1473277	chr9_71972960_+	SINE	Alu	Name=AluSx
ADediting_1473278	chr9_71972973_+	SINE	Alu	Name=AluSx
ADediting_1473279	chr9_71972979_+	SINE	Alu	Name=AluSx
ADediting_1473280	chr9_71972982_+	SINE	Alu	Name=AluSx
ADediting_1473281	chr9_71972983_+	SINE	Alu	Name=AluSx
ADediting_1473282	chr9_71972984_+	SINE	Alu	Name=AluSx
ADediting_1473283	chr9_71972985_+	SINE	Alu	Name=AluSx
ADediting_1473284	chr9_71972991_+	SINE	Alu	Name=AluSx
ADediting_1473285	chr9_71972994_+	SINE	Alu	Name=AluSx
ADediting_1473286	chr9_71972998_+	SINE	Alu	Name=AluSx
ADediting_1473287	chr9_71973024_+	SINE	Alu	Name=AluSx
ADediting_1473288	chr9_71973025_+	SINE	Alu	Name=AluSx
ADediting_1473289	chr9_71973030_+	SINE	Alu	Name=AluSx
ADediting_1473290	chr9_71973034_+	SINE	Alu	Name=AluSx
ADediting_1473291	chr9_71973038_+	SINE	Alu	Name=AluSx
ADediting_1473292	chr9_71973051_+	SINE	Alu	Name=AluSx
ADediting_1473293	chr9_71973054_+	SINE	Alu	Name=AluSx
ADediting_1473294	chr9_71973065_+	SINE	Alu	Name=AluSx
ADediting_1473295	chr9_71973066_+	SINE	Alu	Name=AluSx
ADediting_1473296	chr9_71973086_+	SINE	Alu	Name=AluSx
ADediting_1473297	chr9_71973108_+	SINE	Alu	Name=AluSx
ADediting_1473298	chr9_71974013_+	SINE	Alu	Name=AluSq2
ADediting_1473299	chr9_71974026_+	SINE	Alu	Name=AluSq2
ADediting_1473300	chr9_71974027_+	SINE	Alu	Name=AluSq2
ADediting_1473301	chr9_71974052_+	SINE	Alu	Name=AluSq2
ADediting_1473302	chr9_71974061_+	SINE	Alu	Name=AluSq2
ADediting_1473303	chr9_71974066_+	SINE	Alu	Name=AluSq2
ADediting_1473304	chr9_71974110_+	SINE	Alu	Name=AluSq2
ADediting_1473305	chr9_71974292_+	SINE	Alu	Name=AluSz
ADediting_1473306	chr9_71974299_+	SINE	Alu	Name=AluSz
ADediting_1473307	chr9_71974323_+	SINE	Alu	Name=AluSz
ADediting_1473308	chr9_71974330_+	SINE	Alu	Name=AluSz
ADediting_1473309	chr9_71974361_+	SINE	Alu	Name=AluSz
ADediting_1473310	chr9_71974373_+	SINE	Alu	Name=AluSz
ADediting_1473311	chr9_71974401_+	SINE	Alu	Name=AluSz
ADediting_1473312	chr9_71974410_+	SINE	Alu	Name=AluSz
ADediting_1473313	chr9_71974424_+	SINE	Alu	Name=AluSz
ADediting_1473314	chr9_71974427_+	SINE	Alu	Name=AluSz
ADediting_1473315	chr9_71974434_+	SINE	Alu	Name=AluSz
ADediting_1473316	chr9_71974435_+	SINE	Alu	Name=AluSz
ADediting_1473317	chr9_71974441_+	SINE	Alu	Name=AluSz
ADediting_1473318	chr9_71974444_+	SINE	Alu	Name=AluSz
ADediting_1473319	chr9_71974465_+	SINE	Alu	Name=AluSz
ADediting_1473320	chr9_71974477_+	SINE	Alu	Name=AluSz
ADediting_1473321	chr9_71974478_+	SINE	Alu	Name=AluSz
ADediting_1473322	chr9_71974482_+	SINE	Alu	Name=AluSz
ADediting_1473323	chr9_71974486_+	SINE	Alu	Name=AluSz
ADediting_1473324	chr9_71974490_+	SINE	Alu	Name=AluSz
ADediting_1473325	chr9_71974506_+	SINE	Alu	Name=AluSz
ADediting_1473326	chr9_71975185_+	SINE	Alu	Name=AluSq2
ADediting_1473327	chr9_71975193_+	SINE	Alu	Name=AluSq2
ADediting_1473328	chr9_71975215_+	SINE	Alu	Name=AluSq2
ADediting_1473329	chr9_71975216_+	SINE	Alu	Name=AluSq2
ADediting_1473330	chr9_71975220_+	SINE	Alu	Name=AluSq2
ADediting_1473331	chr9_71975224_+	SINE	Alu	Name=AluSq2
ADediting_1473332	chr9_71975229_+	SINE	Alu	Name=AluSq2
ADediting_1473333	chr9_71975254_+	SINE	Alu	Name=AluSq2
ADediting_1473334	chr9_71975281_+	SINE	Alu	Name=AluSq2
ADediting_1473335	chr9_71975282_+	SINE	Alu	Name=AluSq2
ADediting_1473336	chr9_71975310_+	SINE	Alu	Name=AluSq2
ADediting_1473337	chr9_71975321_+	SINE	Alu	Name=AluSq2
ADediting_1473338	chr9_71975373_+	SINE	Alu	Name=AluSq2
ADediting_1473339	chr9_71975374_+	SINE	Alu	Name=AluSq2
ADediting_1473340	chr9_71975390_+	SINE	Alu	Name=AluSq2
ADediting_1473341	chr9_71975391_+	SINE	Alu	Name=AluSq2
ADediting_1473342	chr9_71975429_+	SINE	Alu	Name=AluSq2
ADediting_1473343	chr9_71975599_+	SINE	Alu	Name=AluSp
ADediting_1473344	chr9_71975613_+	SINE	Alu	Name=AluSp
ADediting_1473345	chr9_71975618_+	SINE	Alu	Name=AluSp
ADediting_1473346	chr9_71975651_+	SINE	Alu	Name=AluSp
ADediting_1473347	chr9_71975685_+	SINE	Alu	Name=AluSp
ADediting_1473348	chr9_71975711_+	SINE	Alu	Name=AluSp
ADediting_1473349	chr9_71975712_+	SINE	Alu	Name=AluSp
ADediting_1473350	chr9_71975721_+	SINE	Alu	Name=AluSp
ADediting_1473351	chr9_71975744_+	SINE	Alu	Name=AluSp
ADediting_1473352	chr9_71975747_+	SINE	Alu	Name=AluSp
ADediting_1473353	chr9_71975758_+	SINE	Alu	Name=AluSp
ADediting_1473354	chr9_71975764_+	SINE	Alu	Name=AluSp
ADediting_1473355	chr9_71975781_+	SINE	Alu	Name=AluSp
ADediting_1473356	chr9_71975782_+	SINE	Alu	Name=AluSp
ADediting_1473357	chr9_71975786_+	SINE	Alu	Name=AluSp
ADediting_1473358	chr9_71975815_+	SINE	Alu	Name=AluSp
ADediting_1473359	chr9_71976541_+	SINE	Alu	Name=AluY
ADediting_1473360	chr9_71978153_+	SINE	Alu	Name=AluSx1
ADediting_1473361	chr9_71978179_+	SINE	Alu	Name=AluSx1
ADediting_1473362	chr9_71978362_+	SINE	Alu	Name=AluSx1
ADediting_1473363	chr9_71978819_+	SINE	Alu	Name=AluSc
ADediting_1473364	chr9_71978825_+	SINE	Alu	Name=AluSc
ADediting_1473365	chr9_71982735_+	SINE	Alu	Name=AluSg
ADediting_1473366	chr9_71982765_+	SINE	Alu	Name=AluSg
ADediting_1473367	chr9_71982775_+	SINE	Alu	Name=AluSg
ADediting_1473368	chr9_71982816_+	SINE	Alu	Name=AluSg
ADediting_1473369	chr9_71982819_+	SINE	Alu	Name=AluSg
ADediting_1473370	chr9_71982836_+	SINE	Alu	Name=AluSg
ADediting_1473371	chr9_71982845_+	SINE	Alu	Name=AluSg
ADediting_1473372	chr9_71983135_+	SINE	Alu	Name=AluSg
ADediting_1473373	chr9_71983176_+	SINE	Alu	Name=AluSg
ADediting_1473374	chr9_71983179_+	SINE	Alu	Name=AluSg
ADediting_1473375	chr9_71983182_+	SINE	Alu	Name=AluSg
ADediting_1473376	chr9_71983185_+	SINE	Alu	Name=AluSg
ADediting_1473377	chr9_71983196_+	SINE	Alu	Name=AluSg
ADediting_1473378	chr9_71983245_+	SINE	Alu	Name=AluSg
ADediting_1473379	chr9_71983255_+	SINE	Alu	Name=AluSg
ADediting_1473380	chr9_71983268_+	SINE	Alu	Name=AluSg
ADediting_1593978	chr9_71912726_+	SINE	Alu	Name=AluSx1
ADediting_1593979	chr9_71912729_+	SINE	Alu	Name=AluSx1
ADediting_1593980	chr9_71912763_+	SINE	Alu	Name=AluSx1
ADediting_1593981	chr9_71912764_+	SINE	Alu	Name=AluSx1
ADediting_1593982	chr9_71972894_+	SINE	Alu	Name=AluSx
ADediting_1593983	chr9_71972929_+	SINE	Alu	Name=AluSx
ADediting_1593984	chr9_71973095_+	SINE	Alu	Name=AluSx
ADediting_1593985	chr9_71973127_+	SINE	Alu	Name=AluSx
ADediting_1593986	chr9_71973983_+	SINE	Alu	Name=AluSq2
ADediting_1593987	chr9_71974305_+	SINE	Alu	Name=AluSz
ADediting_1593988	chr9_71974344_+	SINE	Alu	Name=AluSz
ADediting_1593989	chr9_71974513_+	SINE	Alu	Name=AluSz
ADediting_1593990	chr9_71975293_+	SINE	Alu	Name=AluSq2
ADediting_1593991	chr9_71975297_+	SINE	Alu	Name=AluSq2
ADediting_1593992	chr9_71975326_+	SINE	Alu	Name=AluSq2
ADediting_1593993	chr9_71975600_+	SINE	Alu	Name=AluSp
ADediting_1593994	chr9_71975647_+	SINE	Alu	Name=AluSp
ADediting_1593995	chr9_71975653_+	SINE	Alu	Name=AluSp
ADediting_1593996	chr9_71975662_+	SINE	Alu	Name=AluSp
ADediting_1593997	chr9_71975672_+	SINE	Alu	Name=AluSp
ADediting_1673530	chr9_71923050_+	SINE	Alu	Name=AluSx3
ADediting_1673531	chr9_71961013_+	SINE	Alu	Name=AluSp
ADediting_1673532	chr9_71961481_+	SINE	Alu	Name=AluSg
ADediting_1673533	chr9_71961983_+	SINE	Alu	Name=AluJb
ADediting_1673534	chr9_71972968_+	SINE	Alu	Name=AluSx
ADediting_1673535	chr9_71975656_+	SINE	Alu	Name=AluSp
ADediting_1673536	chr9_71975657_+	SINE	Alu	Name=AluSp
ADediting_1673537	chr9_71978802_+	SINE	Alu	Name=AluSc

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RNA A-to-I editing events in the alternative splicing sites for C9orf85

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

ADeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for C9orf85

Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

- Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

ADeditome ID

Chr

Positoing

Skipped exon

ENSG

ENSTs

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Protein coding region RNA A-to-I editings for C9orf85

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for C9orf85

RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

ADeditom_ID	Position	ENSG	ENST	Transcript name	miRNA ID	Chromosome	Targt	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
ADediting_1473263	chr9_71972880_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-4634	chr9	71972877	71972883	7mer-m8	71972861	71972884	151	-32.12
ADediting_1473264	chr9_71972888_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-513a-5p	chr9	71972882	71972888	7mer-m8	71972872	71972889	144	-16.68
ADediting_1473264	chr9_71972888_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-638	chr9	71972887	71972893	7mer-1a	71972869	71972893	157	-32.92
ADediting_1473265	chr9_71972889_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-8052	chr9	71972887	71972893	7mer-1a	71972875	71972893	140	-24.15
ADediting_1473266	chr9_71972895_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-302a-3p	chr9	71972893	71972899	7mer-m8	71972879	71972900	143	-14.98
ADediting_1473266	chr9_71972895_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-302b-3p	chr9	71972893	71972899	7mer-m8	71972878	71972900	141	-9.83
ADediting_1473266	chr9_71972895_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-302c-3p	chr9	71972893	71972899	7mer-m8	71972880	71972900	145	-11.96
ADediting_1473266	chr9_71972895_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-302d-3p	chr9	71972893	71972899	7mer-m8	71972873	71972900	148	-13.74
ADediting_1473266	chr9_71972895_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-302e	chr9	71972893	71972899	7mer-m8	71972884	71972900	141	-8.62
ADediting_1473266	chr9_71972895_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-372-3p	chr9	71972893	71972899	7mer-m8	71972873	71972900	155	-20.46
ADediting_1473266	chr9_71972895_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-373-3p	chr9	71972893	71972899	7mer-m8	71972877	71972900	164	-22.25
ADediting_1473266	chr9_71972895_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-512-3p	chr9	71972892	71972898	7mer-m8	71972878	71972899	149	-15.51
ADediting_1473266	chr9_71972895_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-520a-3p	chr9	71972893	71972899	7mer-m8	71972879	71972900	140	-11.03
ADediting_1473266	chr9_71972895_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-520b-3p	chr9	71972893	71972899	7mer-m8	71972881	71972900	141	-16.52
ADediting_1473266	chr9_71972895_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-520c-3p	chr9	71972893	71972899	7mer-m8	71972880	71972900	146	-16.52
ADediting_1473266	chr9_71972895_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-520d-3p	chr9	71972893	71972899	7mer-m8	71972879	71972900	140	-15.12
ADediting_1473266	chr9_71972895_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-520e-3p	chr9	71972893	71972899	7mer-m8	71972880	71972900	140	-13.32
ADediting_1473266	chr9_71972895_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6506-5p	chr9	71972888	71972894	7mer-m8	71972873	71972895	144	-13.78
ADediting_1473267	chr9_71972911_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-3176	chr9	71972904	71972910	7mer-m8	71972893	71972911	140	-15.24
ADediting_1473267	chr9_71972911_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-3922-3p	chr9	71972904	71972910	7mer-m8	71972890	71972911	141	-19.14
ADediting_1473267	chr9_71972911_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-7113-3p	chr9	71972908	71972914	7mer-m8	71972893	71972915	155	-30.77
ADediting_1473271	chr9_71972937_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-4732-3p	chr9	71972930	71972936	7mer-m8	71972917	71972937	155	-20.69
ADediting_1473272	chr9_71972943_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-4281	chr9	71972940	71972947	8mer-1a	71972930	71972947	142	-19.48
ADediting_1473272	chr9_71972943_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6716-3p	chr9	71972936	71972942	7mer-m8	71972924	71972943	152	-23.74
ADediting_1473273	chr9_71972945_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-3176	chr9	71972942	71972948	7mer-m8	71972931	71972949	160	-25.38
ADediting_1473273	chr9_71972945_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-3922-3p	chr9	71972942	71972948	7mer-m8	71972925	71972949	161	-28.11
ADediting_1473273	chr9_71972945_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6878-3p	chr9	71972941	71972947	7mer-m8	71972926	71972948	150	-24.06
ADediting_1473276	chr9_71972958_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-3190-5p	chr9	71972951	71972957	7mer-m8	71972939	71972958	154	-19.64
ADediting_1473277	chr9_71972960_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-1306-3p	chr9	71972953	71972959	7mer-m8	71972943	71972960	152	-23.71
ADediting_1473278	chr9_71972973_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-139-3p	chr9	71972971	71972978	8mer-1a	71972951	71972978	159	-31.04
ADediting_1473278	chr9_71972973_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-483-5p	chr9	71972969	71972975	7mer-m8	71972955	71972976	140	-14.67
ADediting_1473279	chr9_71972979_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-7846-3p	chr9	71972974	71972981	8mer-1a	71972962	71972981	145	-16.17
ADediting_1473280	chr9_71972982_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-194-3p	chr9	71972976	71972982	7mer-1a	71972961	71972982	145	-20.34
ADediting_1473280	chr9_71972982_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-30a-3p	chr9	71972978	71972984	7mer-m8	71972963	71972985	153	-16
ADediting_1473280	chr9_71972982_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-30d-3p	chr9	71972978	71972984	7mer-m8	71972963	71972985	153	-18.46
ADediting_1473280	chr9_71972982_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-30e-3p	chr9	71972978	71972984	7mer-m8	71972963	71972985	153	-16
ADediting_1473281	chr9_71972983_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-3682-5p	chr9	71972981	71972987	7mer-m8	71972967	71972988	145	-9.28
ADediting_1473287	chr9_71973024_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-513a-5p	chr9	71973018	71973024	7mer-m8	71973008	71973025	152	-17.32
ADediting_1473287	chr9_71973024_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-638	chr9	71973023	71973029	7mer-1a	71973005	71973029	155	-34.38
ADediting_1473288	chr9_71973025_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-8052	chr9	71973023	71973029	7mer-1a	71973011	71973029	148	-29.06
ADediting_1473290	chr9_71973034_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-1207-3p	chr9	71973027	71973033	7mer-m8	71973017	71973034	140	-12.56
ADediting_1473290	chr9_71973034_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-646	chr9	71973029	71973035	7mer-m8	71973018	71973036	145	-14.99
ADediting_1473293	chr9_71973054_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6752-3p	chr9	71973047	71973053	7mer-m8	71973035	71973054	152	-24.77
ADediting_1473293	chr9_71973054_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6801-3p	chr9	71973048	71973054	7mer-m8	71973036	71973055	148	-24.4
ADediting_1473293	chr9_71973054_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6810-3p	chr9	71973048	71973054	7mer-m8	71973033	71973055	146	-24.6
ADediting_1473295	chr9_71973066_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-4437	chr9	71973062	71973068	7mer-m8	71973049	71973069	146	-17.41
ADediting_1473295	chr9_71973066_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-5088-5p	chr9	71973063	71973069	7mer-m8	71973047	71973070	155	-24.29
ADediting_1473297	chr9_71973108_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-106a-3p	chr9	71973103	71973109	7mer-m8	71973088	71973110	152	-13.75
ADediting_1473297	chr9_71973108_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-130a-3p	chr9	71973105	71973111	7mer-m8	71973091	71973112	153	-17.06
ADediting_1473297	chr9_71973108_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-130b-3p	chr9	71973105	71973111	7mer-m8	71973089	71973112	158	-18.8
ADediting_1473297	chr9_71973108_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-301a-3p	chr9	71973105	71973111	7mer-m8	71973090	71973112	154	-14.72
ADediting_1473297	chr9_71973108_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-301b-3p	chr9	71973105	71973111	7mer-m8	71973090	71973112	154	-15.82
ADediting_1473297	chr9_71973108_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-3666	chr9	71973105	71973111	7mer-m8	71973091	71973112	146	-12.74
ADediting_1473297	chr9_71973108_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-4295	chr9	71973105	71973111	7mer-m8	71973095	71973112	150	-12.01
ADediting_1473297	chr9_71973108_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-454-3p	chr9	71973105	71973111	7mer-m8	71973090	71973112	146	-11.68
ADediting_1473375	chr9_71983182_+	ENSG00000155621.15	ENST00000377031.7	C9orf85-203	hsa-miR-4421	chr9	71983180	71983186	7mer-m8	71983166	71983187	154	-17.71
ADediting_1473375	chr9_71983182_+	ENSG00000155621.15	ENST00000377031.7	C9orf85-203	hsa-miR-4684-5p	chr9	71983176	71983182	7mer-m8	71983161	71983183	159	-15.66
ADediting_1473375	chr9_71983182_+	ENSG00000155621.15	ENST00000377031.7	C9orf85-203	hsa-miR-5699-3p	chr9	71983180	71983186	7mer-m8	71983166	71983187	153	-16.17
ADediting_1473375	chr9_71983182_+	ENSG00000155621.15	ENST00000377031.7	C9orf85-203	hsa-miR-593-3p	chr9	71983178	71983184	7mer-1a	71983166	71983184	140	-19.02
ADediting_1473375	chr9_71983182_+	ENSG00000155621.15	ENST00000377031.7	C9orf85-203	hsa-miR-6818-3p	chr9	71983178	71983184	7mer-m8	71983164	71983185	140	-12.56
ADediting_1473375	chr9_71983182_+	ENSG00000155621.15	ENST00000486911.2	C9orf85-206	hsa-miR-4421	chr9	71983180	71983186	7mer-m8	71983166	71983187	154	-17.71
ADediting_1473375	chr9_71983182_+	ENSG00000155621.15	ENST00000486911.2	C9orf85-206	hsa-miR-4684-5p	chr9	71983176	71983182	7mer-m8	71983161	71983183	159	-15.66
ADediting_1473375	chr9_71983182_+	ENSG00000155621.15	ENST00000486911.2	C9orf85-206	hsa-miR-5699-3p	chr9	71983180	71983186	7mer-m8	71983166	71983187	153	-16.17
ADediting_1473375	chr9_71983182_+	ENSG00000155621.15	ENST00000486911.2	C9orf85-206	hsa-miR-593-3p	chr9	71983178	71983184	7mer-1a	71983166	71983184	140	-19.02
ADediting_1473375	chr9_71983182_+	ENSG00000155621.15	ENST00000486911.2	C9orf85-206	hsa-miR-6818-3p	chr9	71983178	71983184	7mer-m8	71983164	71983185	140	-12.56
ADediting_1473377	chr9_71983196_+	ENSG00000155621.15	ENST00000377031.7	C9orf85-203	hsa-miR-141-3p	chr9	71983193	71983199	7mer-m8	71983179	71983200	145	-13.81
ADediting_1473377	chr9_71983196_+	ENSG00000155621.15	ENST00000377031.7	C9orf85-203	hsa-miR-200a-3p	chr9	71983193	71983199	7mer-m8	71983181	71983200	150	-16.3
ADediting_1473377	chr9_71983196_+	ENSG00000155621.15	ENST00000486911.2	C9orf85-206	hsa-miR-141-3p	chr9	71983193	71983199	7mer-m8	71983179	71983200	145	-13.81
ADediting_1473377	chr9_71983196_+	ENSG00000155621.15	ENST00000486911.2	C9orf85-206	hsa-miR-200a-3p	chr9	71983193	71983199	7mer-m8	71983181	71983200	150	-16.3
ADediting_1473378	chr9_71983245_+	ENSG00000155621.15	ENST00000377031.7	C9orf85-203	hsa-miR-1915-3p	chr9	71983240	71983246	7mer-m8	71983228	71983247	150	-26.07
ADediting_1473378	chr9_71983245_+	ENSG00000155621.15	ENST00000377031.7	C9orf85-203	hsa-miR-6764-5p	chr9	71983240	71983246	7mer-m8	71983224	71983247	150	-23.2
ADediting_1473378	chr9_71983245_+	ENSG00000155621.15	ENST00000377031.7	C9orf85-203	hsa-miR-6798-5p	chr9	71983238	71983244	7mer-m8	71983220	71983245	152	-32.18
ADediting_1473378	chr9_71983245_+	ENSG00000155621.15	ENST00000486911.2	C9orf85-206	hsa-miR-1915-3p	chr9	71983240	71983246	7mer-m8	71983228	71983247	150	-26.07
ADediting_1473378	chr9_71983245_+	ENSG00000155621.15	ENST00000486911.2	C9orf85-206	hsa-miR-6764-5p	chr9	71983240	71983246	7mer-m8	71983224	71983247	150	-23.2
ADediting_1473378	chr9_71983245_+	ENSG00000155621.15	ENST00000486911.2	C9orf85-206	hsa-miR-6798-5p	chr9	71983238	71983244	7mer-m8	71983220	71983245	152	-32.18
ADediting_1473379	chr9_71983255_+	ENSG00000155621.15	ENST00000486911.2	C9orf85-206	hsa-miR-3192-5p	chr9	71983248	71983255	8mer-1a	71983234	71983255	154	-27.24
ADediting_1473379	chr9_71983255_+	ENSG00000155621.15	ENST00000486911.2	C9orf85-206	hsa-miR-326	chr9	71983250	71983256	7mer-m8	71983238	71983257	140	-15.75
ADediting_1473379	chr9_71983255_+	ENSG00000155621.15	ENST00000486911.2	C9orf85-206	hsa-miR-330-5p	chr9	71983250	71983256	7mer-m8	71983233	71983257	141	-22.29
ADediting_1473379	chr9_71983255_+	ENSG00000155621.15	ENST00000486911.2	C9orf85-206	hsa-miR-4314	chr9	71983249	71983255	7mer-m8	71983239	71983256	140	-20.18
ADediting_1473379	chr9_71983255_+	ENSG00000155621.15	ENST00000486911.2	C9orf85-206	hsa-miR-514a-5p	chr9	71983251	71983257	7mer-m8	71983237	71983258	146	-18.62
ADediting_1473380	chr9_71983268_+	ENSG00000155621.15	ENST00000486911.2	C9orf85-206	hsa-miR-2276-3p	chr9	71983264	71983270	7mer-m8	71983251	71983271	148	-19.52
ADediting_1593983	chr9_71972929_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-4726-3p	chr9	71972923	71972929	7mer-m8	71972902	71972930	152	-31.67
ADediting_1593984	chr9_71973095_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-4267	chr9	71973088	71973094	7mer-m8	71973080	71973095	143	-17.65
ADediting_1673534	chr9_71972968_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-4283	chr9	71972965	71972972	8mer-1a	71972955	71972972	150	-21.14

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

ADeditom_ID	Position	ENSG	ENST	Transcript name	miRNA ID	Chromosome	Targt	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
ADediting_1473261	chr9_71972870_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6529-3p	chr9	71972866	71972872	7mer-m8	71972852	71972873	148	-14.85
ADediting_1473261	chr9_71972870_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6889-3p	chr9	71972866	71972872	7mer-m8	71972854	71972873	145	-17.4
ADediting_1473262	chr9_71972872_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-4252	chr9	71972870	71972876	7mer-m8	71972858	71972877	151	-20.16
ADediting_1473262	chr9_71972872_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6529-3p	chr9	71972866	71972872	7mer-m8	71972852	71972873	148	-14.85
ADediting_1473262	chr9_71972872_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6889-3p	chr9	71972866	71972872	7mer-m8	71972854	71972873	145	-17.4
ADediting_1473263	chr9_71972880_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6807-5p	chr9	71972873	71972879	7mer-m8	71972857	71972880	154	-27.23
ADediting_1473264	chr9_71972888_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-10399-5p	chr9	71972883	71972889	7mer-m8	71972869	71972890	144	-10.39
ADediting_1473264	chr9_71972888_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6504-3p	chr9	71972883	71972889	7mer-m8	71972869	71972890	152	-15.11
ADediting_1473264	chr9_71972888_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-7151-3p	chr9	71972881	71972888	8mer-1a	71972864	71972888	145	-18.74
ADediting_1473265	chr9_71972889_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-10399-5p	chr9	71972883	71972889	7mer-m8	71972869	71972890	144	-10.39
ADediting_1473265	chr9_71972889_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-5089-5p	chr9	71972887	71972894	8mer-1a	71972872	71972894	148	-14.7
ADediting_1473265	chr9_71972889_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6504-3p	chr9	71972883	71972889	7mer-m8	71972869	71972890	152	-15.11
ADediting_1473266	chr9_71972895_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6513-5p	chr9	71972888	71972894	7mer-m8	71972872	71972895	149	-17.38
ADediting_1473267	chr9_71972911_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-212-5p	chr9	71972906	71972913	8mer-1a	71972889	71972913	154	-19.8
ADediting_1473268	chr9_71972914_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-4667-3p	chr9	71972910	71972916	7mer-m8	71972897	71972917	155	-26.55
ADediting_1473269	chr9_71972924_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-125a-3p	chr9	71972921	71972928	8mer-1a	71972907	71972928	140	-18.95
ADediting_1473269	chr9_71972924_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-640	chr9	71972917	71972923	7mer-m8	71972902	71972924	150	-21.45
ADediting_1473272	chr9_71972943_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6843-3p	chr9	71972941	71972947	7mer-m8	71972929	71972948	152	-19.47
ADediting_1473272	chr9_71972943_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6848-3p	chr9	71972941	71972947	7mer-m8	71972931	71972948	142	-14.3
ADediting_1473273	chr9_71972945_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-3663-5p	chr9	71972942	71972948	7mer-m8	71972930	71972949	148	-21.98
ADediting_1473273	chr9_71972945_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6131	chr9	71972943	71972949	7mer-m8	71972932	71972950	140	-18.33
ADediting_1473273	chr9_71972945_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6843-3p	chr9	71972941	71972947	7mer-m8	71972929	71972948	152	-19.47
ADediting_1473273	chr9_71972945_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6848-3p	chr9	71972941	71972947	7mer-m8	71972931	71972948	142	-14.3
ADediting_1473274	chr9_71972948_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-3663-5p	chr9	71972942	71972948	7mer-m8	71972930	71972949	148	-21.98
ADediting_1473274	chr9_71972948_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6131	chr9	71972943	71972949	7mer-m8	71972932	71972950	140	-18.33
ADediting_1473274	chr9_71972948_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6843-3p	chr9	71972941	71972947	7mer-m8	71972929	71972948	152	-19.47
ADediting_1473274	chr9_71972948_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6848-3p	chr9	71972941	71972947	7mer-m8	71972931	71972948	142	-14.3
ADediting_1473275	chr9_71972957_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-4435	chr9	71972950	71972957	8mer-1a	71972937	71972957	146	-18.85
ADediting_1473275	chr9_71972957_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-4781-3p	chr9	71972954	71972960	7mer-m8	71972943	71972961	144	-13.86
ADediting_1473276	chr9_71972958_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-4716-5p	chr9	71972956	71972962	7mer-m8	71972942	71972963	140	-10.69
ADediting_1473276	chr9_71972958_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-4781-3p	chr9	71972954	71972960	7mer-m8	71972943	71972961	144	-13.86
ADediting_1473277	chr9_71972960_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-4716-5p	chr9	71972956	71972962	7mer-m8	71972942	71972963	140	-10.69
ADediting_1473277	chr9_71972960_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-4781-3p	chr9	71972954	71972960	7mer-m8	71972943	71972961	144	-13.86
ADediting_1473278	chr9_71972973_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-3170	chr9	71972966	71972972	7mer-m8	71972952	71972973	151	-20.07
ADediting_1473278	chr9_71972973_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6855-5p	chr9	71972966	71972972	7mer-m8	71972949	71972973	143	-18.14
ADediting_1473278	chr9_71972973_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6890-5p	chr9	71972967	71972973	7mer-m8	71972954	71972974	146	-14.97
ADediting_1473279	chr9_71972979_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-1270	chr9	71972972	71972978	7mer-m8	71972957	71972979	149	-20.11
ADediting_1473279	chr9_71972979_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-620	chr9	71972972	71972978	7mer-m8	71972960	71972979	142	-9.99
ADediting_1473285	chr9_71972994_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-4735-5p	chr9	71972992	71972998	7mer-m8	71972978	71972999	140	-5.64
ADediting_1473286	chr9_71972998_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-4735-5p	chr9	71972992	71972998	7mer-m8	71972978	71972999	140	-5.64
ADediting_1473287	chr9_71973024_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-10399-5p	chr9	71973019	71973025	7mer-m8	71973005	71973026	144	-10.26
ADediting_1473287	chr9_71973024_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-7151-3p	chr9	71973017	71973024	8mer-1a	71973008	71973024	146	-17.62
ADediting_1473288	chr9_71973025_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-10399-5p	chr9	71973019	71973025	7mer-m8	71973005	71973026	144	-10.26
ADediting_1473288	chr9_71973025_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-5089-5p	chr9	71973023	71973029	7mer-m8	71973011	71973030	146	-13.24
ADediting_1473289	chr9_71973030_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-5089-5p	chr9	71973023	71973029	7mer-m8	71973011	71973030	146	-13.24
ADediting_1473289	chr9_71973030_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6506-5p	chr9	71973024	71973030	7mer-m8	71973009	71973031	144	-16.21
ADediting_1473290	chr9_71973034_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6869-5p	chr9	71973031	71973037	7mer-m8	71973016	71973038	146	-19.73
ADediting_1473291	chr9_71973038_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-1200	chr9	71973034	71973040	7mer-m8	71973020	71973041	141	-17.86
ADediting_1473291	chr9_71973038_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6869-5p	chr9	71973031	71973037	7mer-m8	71973016	71973038	146	-19.73
ADediting_1473292	chr9_71973051_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-1976	chr9	71973048	71973054	7mer-m8	71973035	71973055	153	-29.73
ADediting_1473292	chr9_71973051_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-660-3p	chr9	71973049	71973056	8mer-1a	71973037	71973056	144	-16.11
ADediting_1473292	chr9_71973051_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6747-3p	chr9	71973046	71973053	8mer-1a	71973031	71973053	149	-23.42
ADediting_1473293	chr9_71973054_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-1976	chr9	71973048	71973054	7mer-m8	71973035	71973055	153	-29.73
ADediting_1473293	chr9_71973054_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-660-3p	chr9	71973049	71973056	8mer-1a	71973037	71973056	144	-16.11
ADediting_1473294	chr9_71973065_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-498-5p	chr9	71973059	71973065	7mer-m8	71973044	71973066	142	-10.65
ADediting_1473295	chr9_71973066_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-498-5p	chr9	71973059	71973065	7mer-m8	71973044	71973066	142	-10.65
ADediting_1473295	chr9_71973066_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6823-5p	chr9	71973064	71973070	7mer-m8	71973052	71973071	144	-17.55
ADediting_1473377	chr9_71983196_+	ENSG00000155621.15	ENST00000377031.7	C9orf85-203	hsa-miR-4289	chr9	71983191	71983197	7mer-m8	71983180	71983198	153	-13.67
ADediting_1473377	chr9_71983196_+	ENSG00000155621.15	ENST00000486911.2	C9orf85-206	hsa-miR-4289	chr9	71983191	71983197	7mer-m8	71983180	71983198	153	-13.67
ADediting_1473378	chr9_71983245_+	ENSG00000155621.15	ENST00000377031.7	C9orf85-203	hsa-miR-3135a	chr9	71983241	71983247	7mer-m8	71983225	71983248	143	-17.27
ADediting_1473378	chr9_71983245_+	ENSG00000155621.15	ENST00000377031.7	C9orf85-203	hsa-miR-4278	chr9	71983238	71983244	7mer-m8	71983228	71983245	140	-17.79
ADediting_1473378	chr9_71983245_+	ENSG00000155621.15	ENST00000486911.2	C9orf85-206	hsa-miR-3135a	chr9	71983241	71983247	7mer-m8	71983225	71983248	143	-17.27
ADediting_1473378	chr9_71983245_+	ENSG00000155621.15	ENST00000486911.2	C9orf85-206	hsa-miR-4278	chr9	71983238	71983244	7mer-m8	71983228	71983245	140	-17.79
ADediting_1473379	chr9_71983255_+	ENSG00000155621.15	ENST00000486911.2	C9orf85-206	hsa-miR-887-5p	chr9	71983248	71983255	8mer-1a	71983235	71983255	153	-16.49
ADediting_1593982	chr9_71972894_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-5089-5p	chr9	71972887	71972894	8mer-1a	71972872	71972894	148	-14.7
ADediting_1593982	chr9_71972894_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6513-5p	chr9	71972888	71972894	7mer-m8	71972872	71972895	149	-17.38
ADediting_1593984	chr9_71973095_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-512-5p	chr9	71973090	71973096	7mer-m8	71973072	71973097	141	-15.04
ADediting_1593985	chr9_71973127_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-3664-5p	chr9	71973124	71973130	7mer-m8	71973109	71973131	151	-18.82
ADediting_1593985	chr9_71973127_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6773-3p	chr9	71973121	71973128	8mer-1a	71973107	71973128	142	-15.63
ADediting_1673534	chr9_71972968_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-23a-5p	chr9	71972964	71972970	7mer-m8	71972949	71972971	144	-21.36
ADediting_1673534	chr9_71972968_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-3170	chr9	71972966	71972972	7mer-m8	71972952	71972973	151	-20.07
ADediting_1673534	chr9_71972968_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-6855-5p	chr9	71972966	71972972	7mer-m8	71972949	71972973	143	-18.14
ADediting_1673534	chr9_71972968_+	ENSG00000155621.15	ENST00000334731.7	C9orf85-201	hsa-miR-718	chr9	71972961	71972967	7mer-m8	71972948	71972968	146	-23.29

RNA A-to-I editing in lncRNA gained miRNA binding sites.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

ADediting_1337757

chr7_5495852_-

ENSG00000155621.15

ENST00000486911.2

C9orf85-206

hsa-miR-589-3p

chr9

71984323

71984329

7mer-m8

71984307

71984330

141

-13.42

ADediting_1535953

chr14_101045971_+

ENSG00000155621.15

ENST00000486911.2

C9orf85-206

hsa-miR-381-3p

chr9

71984242

71984248

7mer-1a

71984223

71984248

146

-21.06

ADediting_1631458

chr19_40282624_-

ENSG00000155621.15

ENST00000486911.2

C9orf85-206

hsa-miR-641

chr9

71984248

71984254

7mer-m8

71984231

71984255

159

-17.07

ADediting_843620

chr2_207754818_+

ENSG00000155621.15

ENST00000486911.2

C9orf85-206

hsa-miR-4775

chr9

71985609

71985615

7mer-m8

71985595

71985616

153

-13.67

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

ADediting_1337757

chr7_5495852_-

ENSG00000155621.15

ENST00000486911.2

C9orf85-206

hsa-miR-589-3p

chr9

71984151

71984157

7mer-m8

71984135

71984158

150

-13.84

ADediting_1535951

chr14_100874558_+

ENSG00000155621.15

ENST00000486911.2

C9orf85-206

hsa-miR-337-3p

chr9

71984821

71984827

7mer-m8

71984805

71984828

143

-12.32

ADediting_1643790

chr3_121049689_+

ENSG00000155621.15

ENST00000486911.2

C9orf85-206

hsa-miR-5682

chr9

71985722

71985728

7mer-m8

71985708

71985729

147

-22.98

ADediting_98288

chr1_32086990_+

ENSG00000155621.15

ENST00000486911.2

C9orf85-206

hsa-miR-5585-3p

chr9

71983351

71983357

7mer-m8

71983337

71983358

144

-15.49

ADediting_98289

chr1_32086992_+

ENSG00000155621.15

ENST00000486911.2

C9orf85-206

hsa-miR-5585-3p

chr9

71983351

71983357

7mer-m8

71983337

71983358

144

-15.49

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for C9orf85

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000377031.7	protein_coding
ENST00000334731.7	protein_coding
ENST00000486911.2	protein_coding

RNA A-to-I editing in miRNA.

ADeditom_ID

ENST

mir_ID

Editing_Information

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

RNA A-to-I editing in mRNA.

ADeditom_ID	ENST	Editing_Information	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
ADediting_1473365	ENST00000377031.7	chr9_71982735_+	592	-342.90	-339.70	-358.40
ADediting_1473366	ENST00000377031.7	chr9_71982765_+	622	-339.40	-339.70	-358.40
ADediting_1473367	ENST00000377031.7	chr9_71982775_+	632	-341.50	-339.70	-358.40
ADediting_1473368	ENST00000377031.7	chr9_71982816_+	673	-341.00	-339.70	-358.40
ADediting_1473369	ENST00000377031.7	chr9_71982819_+	676	-342.70	-339.70	-358.40
ADediting_1473370	ENST00000377031.7	chr9_71982836_+	693	-340.30	-339.70	-358.40
ADediting_1473371	ENST00000377031.7	chr9_71982845_+	702	-339.00	-339.70	-358.40
ADediting_1473372	ENST00000377031.7	chr9_71983135_+	992	-342.90	-339.70	-358.40
ADediting_1473373	ENST00000377031.7	chr9_71983176_+	1033	-341.80	-339.70	-358.40
ADediting_1473374	ENST00000377031.7	chr9_71983179_+	1036	-339.40	-339.70	-358.40
ADediting_1473375	ENST00000377031.7	chr9_71983182_+	1039	-340.00	-339.70	-358.40
ADediting_1473376	ENST00000377031.7	chr9_71983185_+	1042	-341.90	-339.70	-358.40
ADediting_1473377	ENST00000377031.7	chr9_71983196_+	1053	-339.40	-339.70	-358.40
ADediting_1473378	ENST00000377031.7	chr9_71983245_+	1102	-341.90	-339.70	-358.40
ADediting_1473261	ENST00000334731.7	chr9_71972870_+	598	-299.40	-298.60	-342.00
ADediting_1473262	ENST00000334731.7	chr9_71972872_+	600	-301.80	-298.60	-342.00
ADediting_1473263	ENST00000334731.7	chr9_71972880_+	608	-300.20	-298.60	-342.00
ADediting_1473264	ENST00000334731.7	chr9_71972888_+	616	-302.60	-298.60	-342.00
ADediting_1473265	ENST00000334731.7	chr9_71972889_+	617	-299.50	-298.60	-342.00
ADediting_1593982	ENST00000334731.7	chr9_71972894_+	622	-299.70	-298.60	-342.00
ADediting_1473266	ENST00000334731.7	chr9_71972895_+	623	-300.00	-298.60	-342.00
ADediting_1473267	ENST00000334731.7	chr9_71972911_+	639	-302.30	-298.60	-342.00
ADediting_1473268	ENST00000334731.7	chr9_71972914_+	642	-301.00	-298.60	-342.00
ADediting_1473269	ENST00000334731.7	chr9_71972924_+	652	-299.60	-298.60	-342.00
ADediting_1593983	ENST00000334731.7	chr9_71972929_+	657	-301.60	-298.60	-342.00
ADediting_1473270	ENST00000334731.7	chr9_71972934_+	662	-298.80	-298.60	-342.00
ADediting_1473271	ENST00000334731.7	chr9_71972937_+	665	-302.40	-298.60	-342.00
ADediting_1473272	ENST00000334731.7	chr9_71972943_+	671	-301.10	-298.60	-342.00
ADediting_1473273	ENST00000334731.7	chr9_71972945_+	673	-299.00	-298.60	-342.00
ADediting_1473274	ENST00000334731.7	chr9_71972948_+	676	-298.20	-298.60	-342.00
ADediting_1473275	ENST00000334731.7	chr9_71972957_+	685	-300.70	-298.60	-342.00
ADediting_1473276	ENST00000334731.7	chr9_71972958_+	686	-298.90	-298.60	-342.00
ADediting_1473277	ENST00000334731.7	chr9_71972960_+	688	-300.20	-298.60	-342.00
ADediting_1673534	ENST00000334731.7	chr9_71972968_+	696	-304.70	-298.60	-342.00
ADediting_1473278	ENST00000334731.7	chr9_71972973_+	701	-300.90	-298.60	-342.00
ADediting_1473279	ENST00000334731.7	chr9_71972979_+	707	-304.00	-298.60	-342.00
ADediting_1473280	ENST00000334731.7	chr9_71972982_+	710	-298.40	-298.60	-342.00
ADediting_1473281	ENST00000334731.7	chr9_71972983_+	711	-298.60	-298.60	-342.00
ADediting_1473282	ENST00000334731.7	chr9_71972984_+	712	-299.60	-298.60	-342.00
ADediting_1473283	ENST00000334731.7	chr9_71972985_+	713	-299.30	-298.60	-342.00
ADediting_1473284	ENST00000334731.7	chr9_71972991_+	719	-299.40	-298.60	-342.00
ADediting_1473285	ENST00000334731.7	chr9_71972994_+	722	-300.20	-298.60	-342.00
ADediting_1473286	ENST00000334731.7	chr9_71972998_+	726	-300.00	-298.60	-342.00
ADediting_1473287	ENST00000334731.7	chr9_71973024_+	752	-299.30	-298.60	-342.00
ADediting_1473288	ENST00000334731.7	chr9_71973025_+	753	-301.00	-298.60	-342.00
ADediting_1473289	ENST00000334731.7	chr9_71973030_+	758	-300.10	-298.60	-342.00
ADediting_1473290	ENST00000334731.7	chr9_71973034_+	762	-300.50	-298.60	-342.00
ADediting_1473291	ENST00000334731.7	chr9_71973038_+	766	-301.90	-298.60	-342.00
ADediting_1473292	ENST00000334731.7	chr9_71973051_+	779	-298.90	-298.60	-342.00
ADediting_1473293	ENST00000334731.7	chr9_71973054_+	782	-301.20	-298.60	-342.00
ADediting_1473294	ENST00000334731.7	chr9_71973065_+	793	-300.60	-298.60	-342.00
ADediting_1473295	ENST00000334731.7	chr9_71973066_+	794	-302.00	-298.60	-342.00
ADediting_1473296	ENST00000334731.7	chr9_71973086_+	814	-300.70	-298.60	-342.00
ADediting_1593984	ENST00000334731.7	chr9_71973095_+	823	-300.10	-298.60	-342.00
ADediting_1473297	ENST00000334731.7	chr9_71973108_+	836	-298.60	-298.60	-342.00
ADediting_1593985	ENST00000334731.7	chr9_71973127_+	855	-298.60	-298.60	-342.00
ADediting_1473372	ENST00000486911.2	chr9_71983135_+	402	-972.40	-969.20	-986.10
ADediting_1473373	ENST00000486911.2	chr9_71983176_+	443	-972.70	-969.20	-986.10
ADediting_1473374	ENST00000486911.2	chr9_71983179_+	446	-970.80	-969.20	-986.10
ADediting_1473375	ENST00000486911.2	chr9_71983182_+	449	-969.80	-969.20	-986.10
ADediting_1473376	ENST00000486911.2	chr9_71983185_+	452	-971.40	-969.20	-986.10
ADediting_1473377	ENST00000486911.2	chr9_71983196_+	463	-968.90	-969.20	-986.10
ADediting_1473378	ENST00000486911.2	chr9_71983245_+	512	-972.10	-969.20	-986.10
ADediting_1473379	ENST00000486911.2	chr9_71983255_+	522	-972.50	-969.20	-986.10
ADediting_1473380	ENST00000486911.2	chr9_71983268_+	535	-971.80	-969.20	-986.10

RNA A-to-I editing in lncRNA.

ADeditom_ID

ENST

Editing_Information

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for C9orf85

Correlation between ADAR gene expression and RNA editing frequency

Tissue	ADeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
DLPFC	ADediting_1473321	chr9_71974478_+	0.0823609643332776	0.0988209858711656	0.929242887981456	0.00506378012273199	4.2353462291653e-15	0.426024737868515
DLPFC	ADediting_1473325	chr9_71974506_+	0.00555831595585988	0.157137457800947	0.48221401405634	0.0400590993252654	1.97399764668477e-11	0.368950486300835
DLPFC	ADediting_1473330	chr9_71975220_+	0.347633529952757	0.0535203395603679	0.450826438216161	-0.0429803131562955	2.96057231452743e-16	0.441962914294372
DLPFC	ADediting_1473332	chr9_71975229_+	0.186968862049721	0.0751457611117115	0.803674304205693	-0.0141757877563696	1.16669305245724e-12	0.389310269449217
TCX	ADediting_1473332	chr9_71975229_+	0.765346666559655	-0.0245716110837607	0.0392173209933782	-0.16855690501881	2.38969716904471e-05	0.337607978449288
DLPFC	ADediting_1473340	chr9_71975390_+	0.679882817016223	0.0235272138471963	0.133634231605076	-0.0853792155128335	2.23085893267986e-16	0.44360990533262
DLPFC	ADediting_1473344	chr9_71975613_+	0.648845366320015	0.0259636232475861	0.848355735097052	0.0109041120422531	1.63474918319822e-08	0.313844383442876
DLPFC	ADediting_1473355	chr9_71975781_+	0.830942911599035	0.012174285646717	0.323736898642033	-0.0562297132400789	6.35714606810897e-09	0.322280472135726

Correlation between ADAR gene expression and this gene's expression

Tissue	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
DLPFC	7.48030460938398e-12	0.37609617589503	0.00634957628954577	0.15469667266767	2.64189744214756e-59	0.758815351613312
AC	3.44541449145231e-55	0.792526924161354	1.0627362304776e-33	0.668186641116028	1.15723945260456e-29	0.635312657390595
PCC	5.25719387929581e-21	0.611907461902538	3.08097899054757e-17	0.561149138839447	2.42091253903536e-07	0.363180702814002
CER	1.32823788287481e-25	0.72360834763286	8.72327629986302e-11	0.498224280091934	0.000111655796299414	0.310249193957862
TCX	2.30848503371237e-06	0.374726612152123	0.0543973961771919	-0.157402287399973	1.26125389784504e-27	0.743307883247561
FP	2.68381809337765e-19	0.60697949689105	1.0652453110868e-17	0.584565875962398	4.31100930269171e-10	0.446206756462686
PG	7.50015574783988e-34	0.742505240283501	4.49255522416359e-16	0.549637950208933	0.00310345500792832	0.215734828975939
STG	4.5756957967346e-07	0.517725388723125	0.000200736382003413	0.394969572080182	5.15436828390786e-08	0.552256754144693

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Relation with AD stages for C9orf85

Correlation between AD stages and RNA editing frequency

Tissue

ADeditomID

position

P-val

Coeff.

Correlation between AD stages and this gene's expression

Tissue	P-val	Coeff.
TCX	1.09404583378332e-05	0.412825188372281

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RelatedDrugs for C9orf85

Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for C9orf85

Diseases associated with this gene.
(DisGeNet 4.0)

Gene

Disease ID

Disease name

# pubmeds

Source

Home

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Statistics

Landscape

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Contact

Gene summary for C9orf85

RNA A-to-I events for C9orf85

RNA editing positional annotations for C9orf85 using Annovar

RNA A-to-I editing events in the alternative splicing sites for C9orf85

Differntial gene expression between RNA A-to-I edited versus non-edited samples for C9orf85

Protein coding region RNA A-to-I editings for C9orf85

The effects of the RNA editing to the miRNA binding sites for C9orf85

The effects of the RNA editing to the stability of the RNA structures for C9orf85

Relation with ADAR for C9orf85

Relation with AD stages for C9orf85

RelatedDrugs for C9orf85

RelatedDiseases for C9orf85

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited versus non-edited samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with AD stages
	Related drugs with this gene
	Related diseases with this gene