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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for LSM11 |
 Gene summary |
| Gene information | Gene symbol | LSM11 | Gene ID | 134353 |
| Gene name | LSM11, U7 small nuclear RNA associated | |
| Synonyms | - | |
| Cytomap | 5q33.3 | |
| Type of gene | protein-coding | |
| Description | U7 snRNA-associated Sm-like protein LSm11 | |
| Modification date | 20200322 | |
| UniProtAcc | P83369, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for LSM11 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_1183548(157746776, +), ADediting_1183549(157746803, +), ADediting_1183550(157746839, +), ADediting_1183551(157751002, +), ADediting_1183552(157751034, +), ADediting_1183553(157751044, +), ADediting_1183554(157756904, +), ADediting_1183555(157756912, +), ADediting_1183556(157756913, +), ADediting_1183557(157756918, +), ADediting_1183558(157756951, +), ADediting_1183559(157756964, +), ADediting_1183560(157756979, +), ADediting_1183561(157756980, +), ADediting_1183562(157756982, +), ADediting_1183563(157756990, +), ADediting_1183564(157757001, +), ADediting_1183565(157757004, +), ADediting_1183566(157757005, +), ADediting_1183567(157757006, +), ADediting_1183568(157757007, +), ADediting_1183569(157757008, +), ADediting_1183570(157757015, +), ADediting_1183571(157757016, +), ADediting_1183572(157757045, +), ADediting_1183573(157757051, +), ADediting_1183574(157757055, +), ADediting_1183575(157757072, +), ADediting_1183576(157757078, +), ADediting_1183577(157757086, +), ADediting_1183578(157757087, +), ADediting_1183579(157757107, +), ADediting_1183580(157757115, +), ADediting_1183581(157757116, +), ADediting_1183582(157757123, +), ADediting_1183583(157757172, +), ADediting_1183584(157758110, +), ADediting_1183585(157758184, +), ADediting_1183586(157758208, +), ADediting_1183587(157758214, +), ADediting_1183588(157758215, +), ADediting_1183589(157758219, +), ADediting_1183590(157758232, +), ADediting_1183591(157758244, +), ADediting_1183592(157758280, +), ADediting_1183593(157758286, +), ADediting_1183594(157758289, +), ADediting_1183595(157758294, +), ADediting_1183596(157758303, +), ADediting_1183597(157758311, +), ADediting_1183598(157758315, +), ADediting_1183599(157758328, +), ADediting_1183600(157758349, +), ADediting_1183601(157758358, +), ADediting_1183602(157758366, +), ADediting_1183603(157758367, +), ADediting_1183604(157758368, +), ADediting_1183605(157758380, +), ADediting_1580134(157756929, +), ADediting_1580135(157756956, +), ADediting_1580136(157758257, +), ADediting_1580137(157758267, +), |
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RNA editing positional annotations for LSM11 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1183548 | chr5_157746776_+ | intronic |
| ADediting_1183549 | chr5_157746803_+ | intronic |
| ADediting_1183550 | chr5_157746839_+ | intronic |
| ADediting_1183551 | chr5_157751002_+ | intronic |
| ADediting_1183552 | chr5_157751034_+ | intronic |
| ADediting_1183553 | chr5_157751044_+ | intronic |
| ADediting_1183554 | chr5_157756904_+ | UTR3 |
| ADediting_1183555 | chr5_157756912_+ | UTR3 |
| ADediting_1183556 | chr5_157756913_+ | UTR3 |
| ADediting_1183557 | chr5_157756918_+ | UTR3 |
| ADediting_1183558 | chr5_157756951_+ | UTR3 |
| ADediting_1183559 | chr5_157756964_+ | UTR3 |
| ADediting_1183560 | chr5_157756979_+ | UTR3 |
| ADediting_1183561 | chr5_157756980_+ | UTR3 |
| ADediting_1183562 | chr5_157756982_+ | UTR3 |
| ADediting_1183563 | chr5_157756990_+ | UTR3 |
| ADediting_1183564 | chr5_157757001_+ | UTR3 |
| ADediting_1183565 | chr5_157757004_+ | UTR3 |
| ADediting_1183566 | chr5_157757005_+ | UTR3 |
| ADediting_1183567 | chr5_157757006_+ | UTR3 |
| ADediting_1183568 | chr5_157757007_+ | UTR3 |
| ADediting_1183569 | chr5_157757008_+ | UTR3 |
| ADediting_1183570 | chr5_157757015_+ | UTR3 |
| ADediting_1183571 | chr5_157757016_+ | UTR3 |
| ADediting_1183572 | chr5_157757045_+ | UTR3 |
| ADediting_1183573 | chr5_157757051_+ | UTR3 |
| ADediting_1183574 | chr5_157757055_+ | UTR3 |
| ADediting_1183575 | chr5_157757072_+ | UTR3 |
| ADediting_1183576 | chr5_157757078_+ | UTR3 |
| ADediting_1183577 | chr5_157757086_+ | UTR3 |
| ADediting_1183578 | chr5_157757087_+ | UTR3 |
| ADediting_1183579 | chr5_157757107_+ | UTR3 |
| ADediting_1183580 | chr5_157757115_+ | UTR3 |
| ADediting_1183581 | chr5_157757116_+ | UTR3 |
| ADediting_1183582 | chr5_157757123_+ | UTR3 |
| ADediting_1183583 | chr5_157757172_+ | UTR3 |
| ADediting_1183584 | chr5_157758110_+ | UTR3 |
| ADediting_1183585 | chr5_157758184_+ | UTR3 |
| ADediting_1183586 | chr5_157758208_+ | UTR3 |
| ADediting_1183587 | chr5_157758214_+ | UTR3 |
| ADediting_1183588 | chr5_157758215_+ | UTR3 |
| ADediting_1183589 | chr5_157758219_+ | UTR3 |
| ADediting_1183590 | chr5_157758232_+ | UTR3 |
| ADediting_1183591 | chr5_157758244_+ | UTR3 |
| ADediting_1183592 | chr5_157758280_+ | UTR3 |
| ADediting_1183593 | chr5_157758286_+ | UTR3 |
| ADediting_1183594 | chr5_157758289_+ | UTR3 |
| ADediting_1183595 | chr5_157758294_+ | UTR3 |
| ADediting_1183596 | chr5_157758303_+ | UTR3 |
| ADediting_1183597 | chr5_157758311_+ | UTR3 |
| ADediting_1183598 | chr5_157758315_+ | UTR3 |
| ADediting_1183599 | chr5_157758328_+ | UTR3 |
| ADediting_1183600 | chr5_157758349_+ | UTR3 |
| ADediting_1183601 | chr5_157758358_+ | UTR3 |
| ADediting_1183602 | chr5_157758366_+ | UTR3 |
| ADediting_1183603 | chr5_157758367_+ | UTR3 |
| ADediting_1183604 | chr5_157758368_+ | UTR3 |
| ADediting_1183605 | chr5_157758380_+ | UTR3 |
| ADediting_1580134 | chr5_157756929_+ | UTR3 |
| ADediting_1580135 | chr5_157756956_+ | UTR3 |
| ADediting_1580136 | chr5_157758257_+ | UTR3 |
| ADediting_1580137 | chr5_157758267_+ | UTR3 |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1183548 | chr5_157746776_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1183549 | chr5_157746803_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1183550 | chr5_157746839_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1183551 | chr5_157751002_+ | SINE | Alu | Name=AluSx |
| ADediting_1183552 | chr5_157751034_+ | SINE | Alu | Name=AluSx |
| ADediting_1183553 | chr5_157751044_+ | SINE | Alu | Name=AluSx |
| ADediting_1183554 | chr5_157756904_+ | SINE | Alu | Name=AluY |
| ADediting_1183555 | chr5_157756912_+ | SINE | Alu | Name=AluY |
| ADediting_1183556 | chr5_157756913_+ | SINE | Alu | Name=AluY |
| ADediting_1183557 | chr5_157756918_+ | SINE | Alu | Name=AluY |
| ADediting_1183558 | chr5_157756951_+ | SINE | Alu | Name=AluY |
| ADediting_1183559 | chr5_157756964_+ | SINE | Alu | Name=AluY |
| ADediting_1183560 | chr5_157756979_+ | SINE | Alu | Name=AluY |
| ADediting_1183561 | chr5_157756980_+ | SINE | Alu | Name=AluY |
| ADediting_1183562 | chr5_157756982_+ | SINE | Alu | Name=AluY |
| ADediting_1183563 | chr5_157756990_+ | SINE | Alu | Name=AluY |
| ADediting_1183564 | chr5_157757001_+ | SINE | Alu | Name=AluY |
| ADediting_1183565 | chr5_157757004_+ | SINE | Alu | Name=AluY |
| ADediting_1183566 | chr5_157757005_+ | SINE | Alu | Name=AluY |
| ADediting_1183567 | chr5_157757006_+ | SINE | Alu | Name=AluY |
| ADediting_1183568 | chr5_157757007_+ | SINE | Alu | Name=AluY |
| ADediting_1183569 | chr5_157757008_+ | SINE | Alu | Name=AluY |
| ADediting_1183570 | chr5_157757015_+ | SINE | Alu | Name=AluY |
| ADediting_1183571 | chr5_157757016_+ | SINE | Alu | Name=AluY |
| ADediting_1183572 | chr5_157757045_+ | SINE | Alu | Name=AluY |
| ADediting_1183573 | chr5_157757051_+ | SINE | Alu | Name=AluY |
| ADediting_1183574 | chr5_157757055_+ | SINE | Alu | Name=AluY |
| ADediting_1183575 | chr5_157757072_+ | SINE | Alu | Name=AluY |
| ADediting_1183576 | chr5_157757078_+ | SINE | Alu | Name=AluY |
| ADediting_1183577 | chr5_157757086_+ | SINE | Alu | Name=AluY |
| ADediting_1183578 | chr5_157757087_+ | SINE | Alu | Name=AluY |
| ADediting_1183579 | chr5_157757107_+ | SINE | Alu | Name=AluY |
| ADediting_1183580 | chr5_157757115_+ | SINE | Alu | Name=AluY |
| ADediting_1183581 | chr5_157757116_+ | SINE | Alu | Name=AluY |
| ADediting_1183582 | chr5_157757123_+ | SINE | Alu | Name=AluY |
| ADediting_1183583 | chr5_157757172_+ | SINE | Alu | Name=AluY |
| ADediting_1183585 | chr5_157758184_+ | SINE | Alu | Name=AluSq |
| ADediting_1183586 | chr5_157758208_+ | SINE | Alu | Name=AluSq |
| ADediting_1183587 | chr5_157758214_+ | SINE | Alu | Name=AluSq |
| ADediting_1183588 | chr5_157758215_+ | SINE | Alu | Name=AluSq |
| ADediting_1183589 | chr5_157758219_+ | SINE | Alu | Name=AluSq |
| ADediting_1183590 | chr5_157758232_+ | SINE | Alu | Name=AluSq |
| ADediting_1183591 | chr5_157758244_+ | SINE | Alu | Name=AluSq |
| ADediting_1183592 | chr5_157758280_+ | SINE | Alu | Name=AluSq |
| ADediting_1183593 | chr5_157758286_+ | SINE | Alu | Name=AluSq |
| ADediting_1183594 | chr5_157758289_+ | SINE | Alu | Name=AluSq |
| ADediting_1183595 | chr5_157758294_+ | SINE | Alu | Name=AluSq |
| ADediting_1183596 | chr5_157758303_+ | SINE | Alu | Name=AluSq |
| ADediting_1183597 | chr5_157758311_+ | SINE | Alu | Name=AluSq |
| ADediting_1183598 | chr5_157758315_+ | SINE | Alu | Name=AluSq |
| ADediting_1183599 | chr5_157758328_+ | SINE | Alu | Name=AluSq |
| ADediting_1183600 | chr5_157758349_+ | SINE | Alu | Name=AluSq |
| ADediting_1183601 | chr5_157758358_+ | SINE | Alu | Name=AluSq |
| ADediting_1183602 | chr5_157758366_+ | SINE | Alu | Name=AluSq |
| ADediting_1183603 | chr5_157758367_+ | SINE | Alu | Name=AluSq |
| ADediting_1183604 | chr5_157758368_+ | SINE | Alu | Name=AluSq |
| ADediting_1183605 | chr5_157758380_+ | SINE | Alu | Name=AluSq |
| ADediting_1580134 | chr5_157756929_+ | SINE | Alu | Name=AluY |
| ADediting_1580135 | chr5_157756956_+ | SINE | Alu | Name=AluY |
| ADediting_1580136 | chr5_157758257_+ | SINE | Alu | Name=AluSq |
| ADediting_1580137 | chr5_157758267_+ | SINE | Alu | Name=AluSq |
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RNA A-to-I editing events in the alternative splicing sites for LSM11 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for LSM11 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for LSM11 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for LSM11 |
| RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1183554 | chr5_157756904_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4634 | chr5 | 157756901 | 157756907 | 7mer-m8 | 157756890 | 157756908 | 150 | -23.29 |
| ADediting_1183555 | chr5_157756912_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-513a-5p | chr5 | 157756906 | 157756912 | 7mer-m8 | 157756896 | 157756913 | 144 | -16.68 |
| ADediting_1183555 | chr5_157756912_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-638 | chr5 | 157756911 | 157756917 | 7mer-1a | 157756893 | 157756917 | 159 | -35.56 |
| ADediting_1183556 | chr5_157756913_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-8052 | chr5 | 157756911 | 157756917 | 7mer-1a | 157756899 | 157756917 | 140 | -24.15 |
| ADediting_1183557 | chr5_157756918_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-371a-3p | chr5 | 157756916 | 157756922 | 7mer-m8 | 157756901 | 157756923 | 145 | -17.36 |
| ADediting_1183558 | chr5_157756951_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-10a-5p | chr5 | 157756947 | 157756953 | 7mer-m8 | 157756933 | 157756954 | 157 | -24.6 |
| ADediting_1183558 | chr5_157756951_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-10b-5p | chr5 | 157756947 | 157756953 | 7mer-m8 | 157756933 | 157756954 | 149 | -19.81 |
| ADediting_1183558 | chr5_157756951_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-146b-3p | chr5 | 157756946 | 157756952 | 7mer-m8 | 157756929 | 157756953 | 147 | -23.67 |
| ADediting_1183558 | chr5_157756951_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4679 | chr5 | 157756944 | 157756950 | 7mer-m8 | 157756930 | 157756951 | 144 | -14.39 |
| ADediting_1183558 | chr5_157756951_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4725-5p | chr5 | 157756948 | 157756955 | 8mer-1a | 157756935 | 157756955 | 150 | -24.04 |
| ADediting_1183558 | chr5_157756951_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-504-5p | chr5 | 157756948 | 157756955 | 8mer-1a | 157756934 | 157756955 | 154 | -20.79 |
| ADediting_1183560 | chr5_157756979_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3157-5p | chr5 | 157756973 | 157756979 | 7mer-m8 | 157756959 | 157756980 | 159 | -20.56 |
| ADediting_1183563 | chr5_157756990_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3158-3p | chr5 | 157756987 | 157756993 | 7mer-m8 | 157756969 | 157756994 | 149 | -21.54 |
| ADediting_1183563 | chr5_157756990_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-412-3p | chr5 | 157756983 | 157756989 | 7mer-m8 | 157756968 | 157756990 | 151 | -19.78 |
| ADediting_1183563 | chr5_157756990_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6754-3p | chr5 | 157756983 | 157756989 | 7mer-m8 | 157756970 | 157756990 | 146 | -16.46 |
| ADediting_1183564 | chr5_157757001_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-374b-3p | chr5 | 157756998 | 157757005 | 8mer-1a | 157756983 | 157757005 | 143 | -11.09 |
| ADediting_1183565 | chr5_157757004_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-222-5p | chr5 | 157756998 | 157757005 | 8mer-1a | 157756982 | 157757005 | 146 | -14.17 |
| ADediting_1183565 | chr5_157757004_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-30a-3p | chr5 | 157757000 | 157757007 | 8mer-1a | 157756983 | 157757007 | 150 | -10.49 |
| ADediting_1183565 | chr5_157757004_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-30d-3p | chr5 | 157757000 | 157757007 | 8mer-1a | 157756982 | 157757007 | 147 | -13.22 |
| ADediting_1183565 | chr5_157757004_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-30e-3p | chr5 | 157757000 | 157757007 | 8mer-1a | 157756983 | 157757007 | 150 | -11.75 |
| ADediting_1183565 | chr5_157757004_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-936 | chr5 | 157756997 | 157757004 | 8mer-1a | 157756982 | 157757004 | 159 | -26.12 |
| ADediting_1183566 | chr5_157757005_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-325 | chr5 | 157756998 | 157757005 | 8mer-1a | 157756983 | 157757005 | 141 | -12.77 |
| ADediting_1183567 | chr5_157757006_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-630 | chr5 | 157757004 | 157757011 | 8mer-1a | 157756990 | 157757011 | 157 | -16.15 |
| ADediting_1183570 | chr5_157757015_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6844 | chr5 | 157757009 | 157757015 | 7mer-m8 | 157756995 | 157757016 | 155 | -7.49 |
| ADediting_1183572 | chr5_157757045_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-140-3p | chr5 | 157757040 | 157757046 | 7mer-m8 | 157757024 | 157757047 | 148 | -28.72 |
| ADediting_1183574 | chr5_157757055_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-1207-3p | chr5 | 157757048 | 157757054 | 7mer-m8 | 157757037 | 157757055 | 145 | -13.53 |
| ADediting_1183575 | chr5_157757072_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6867-3p | chr5 | 157757071 | 157757077 | 7mer-1a | 157757057 | 157757077 | 143 | -24.81 |
| ADediting_1183576 | chr5_157757078_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4286 | chr5 | 157757076 | 157757082 | 7mer-m8 | 157757065 | 157757083 | 147 | -21.99 |
| ADediting_1183576 | chr5_157757078_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4639-3p | chr5 | 157757073 | 157757079 | 7mer-m8 | 157757064 | 157757080 | 146 | -18.62 |
| ADediting_1183576 | chr5_157757078_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6777-3p | chr5 | 157757074 | 157757080 | 7mer-m8 | 157757062 | 157757081 | 164 | -31.52 |
| ADediting_1183578 | chr5_157757087_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4284 | chr5 | 157757082 | 157757088 | 7mer-m8 | 157757072 | 157757089 | 148 | -23.05 |
| ADediting_1183578 | chr5_157757087_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4437 | chr5 | 157757083 | 157757089 | 7mer-m8 | 157757070 | 157757090 | 140 | -15.06 |
| ADediting_1183580 | chr5_157757115_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4638-5p | chr5 | 157757110 | 157757117 | 8mer-1a | 157757098 | 157757117 | 146 | -21.99 |
| ADediting_1183581 | chr5_157757116_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-149-5p | chr5 | 157757109 | 157757115 | 7mer-m8 | 157757091 | 157757116 | 147 | -25.95 |
| ADediting_1183583 | chr5_157757172_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-204-5p | chr5 | 157757168 | 157757175 | 8mer-1a | 157757154 | 157757175 | 142 | -10.74 |
| ADediting_1183583 | chr5_157757172_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-211-5p | chr5 | 157757168 | 157757175 | 8mer-1a | 157757154 | 157757175 | 142 | -10.74 |
| ADediting_1183583 | chr5_157757172_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4446-5p | chr5 | 157757170 | 157757177 | 8mer-1a | 157757156 | 157757177 | 140 | -12.75 |
| ADediting_1183583 | chr5_157757172_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4755-5p | chr5 | 157757169 | 157757176 | 8mer-1a | 157757147 | 157757176 | 147 | -23.04 |
| ADediting_1183583 | chr5_157757172_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-5006-3p | chr5 | 157757169 | 157757176 | 8mer-1a | 157757156 | 157757176 | 145 | -18.03 |
| ADediting_1183583 | chr5_157757172_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6832-3p | chr5 | 157757167 | 157757174 | 8mer-1a | 157757155 | 157757174 | 145 | -11.04 |
| ADediting_1183585 | chr5_157758184_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4537 | chr5 | 157758181 | 157758187 | 7mer-m8 | 157758166 | 157758188 | 151 | -23.25 |
| ADediting_1183586 | chr5_157758208_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-1247-3p | chr5 | 157758203 | 157758209 | 7mer-m8 | 157758188 | 157758210 | 148 | -21.66 |
| ADediting_1183588 | chr5_157758215_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6078 | chr5 | 157758211 | 157758218 | 8mer-1a | 157758200 | 157758218 | 149 | -21.5 |
| ADediting_1183589 | chr5_157758219_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-589-5p | chr5 | 157758217 | 157758223 | 7mer-m8 | 157758204 | 157758224 | 150 | -15.69 |
| ADediting_1183591 | chr5_157758244_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4691-3p | chr5 | 157758241 | 157758247 | 7mer-m8 | 157758221 | 157758248 | 146 | -23.89 |
| ADediting_1183595 | chr5_157758294_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3183 | chr5 | 157758288 | 157758294 | 7mer-m8 | 157758274 | 157758295 | 140 | -13.44 |
| ADediting_1183595 | chr5_157758294_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4640-3p | chr5 | 157758292 | 157758298 | 7mer-m8 | 157758278 | 157758299 | 157 | -19.4 |
| ADediting_1183595 | chr5_157758294_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4723-3p | chr5 | 157758288 | 157758294 | 7mer-m8 | 157758275 | 157758295 | 142 | -17.74 |
| ADediting_1183595 | chr5_157758294_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6769b-3p | chr5 | 157758288 | 157758294 | 7mer-m8 | 157758275 | 157758295 | 142 | -17.49 |
| ADediting_1183595 | chr5_157758294_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6892-3p | chr5 | 157758289 | 157758295 | 7mer-m8 | 157758276 | 157758296 | 140 | -16.14 |
| ADediting_1183596 | chr5_157758303_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4445-3p | chr5 | 157758300 | 157758306 | 7mer-m8 | 157758287 | 157758307 | 150 | -18.55 |
| ADediting_1183596 | chr5_157758303_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-548al | chr5 | 157758300 | 157758306 | 7mer-m8 | 157758284 | 157758307 | 155 | -19.01 |
| ADediting_1183597 | chr5_157758311_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3190-5p | chr5 | 157758309 | 157758315 | 7mer-m8 | 157758298 | 157758316 | 152 | -22.63 |
| ADediting_1183597 | chr5_157758311_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-548s | chr5 | 157758308 | 157758314 | 7mer-m8 | 157758293 | 157758315 | 152 | -12.34 |
| ADediting_1183598 | chr5_157758315_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3940-3p | chr5 | 157758312 | 157758318 | 7mer-m8 | 157758298 | 157758319 | 146 | -20.09 |
| ADediting_1183599 | chr5_157758328_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-28-5p | chr5 | 157758326 | 157758332 | 7mer-m8 | 157758313 | 157758333 | 159 | -22.83 |
| ADediting_1183599 | chr5_157758328_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3670 | chr5 | 157758324 | 157758330 | 7mer-m8 | 157758308 | 157758331 | 154 | -17.5 |
| ADediting_1183599 | chr5_157758328_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-708-5p | chr5 | 157758326 | 157758332 | 7mer-m8 | 157758312 | 157758333 | 158 | -23.93 |
| ADediting_1183600 | chr5_157758349_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3937 | chr5 | 157758346 | 157758352 | 7mer-m8 | 157758332 | 157758353 | 150 | -20.91 |
| ADediting_1183601 | chr5_157758358_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6089 | chr5 | 157758356 | 157758362 | 7mer-m8 | 157758341 | 157758363 | 164 | -38.52 |
| ADediting_1183602 | chr5_157758366_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6771-5p | chr5 | 157758360 | 157758367 | 8mer-1a | 157758348 | 157758367 | 160 | -30.26 |
| ADediting_1183603 | chr5_157758367_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-326 | chr5 | 157758362 | 157758368 | 7mer-m8 | 157758350 | 157758369 | 140 | -13.96 |
| ADediting_1183603 | chr5_157758367_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-330-5p | chr5 | 157758362 | 157758368 | 7mer-m8 | 157758346 | 157758369 | 143 | -22.58 |
| ADediting_1183603 | chr5_157758367_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4314 | chr5 | 157758361 | 157758367 | 7mer-m8 | 157758350 | 157758368 | 143 | -24.03 |
| ADediting_1183603 | chr5_157758367_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-514a-5p | chr5 | 157758363 | 157758369 | 7mer-m8 | 157758347 | 157758370 | 150 | -18.62 |
| ADediting_1183604 | chr5_157758368_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3189-3p | chr5 | 157758362 | 157758368 | 7mer-m8 | 157758346 | 157758369 | 153 | -26.36 |
| ADediting_1183604 | chr5_157758368_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6813-3p | chr5 | 157758363 | 157758369 | 7mer-m8 | 157758350 | 157758370 | 140 | -11.59 |
| ADediting_1580134 | chr5_157756929_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3943 | chr5 | 157756926 | 157756932 | 7mer-m8 | 157756912 | 157756933 | 143 | -22.28 |
| ADediting_1580136 | chr5_157758257_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6770-3p | chr5 | 157758253 | 157758259 | 7mer-m8 | 157758240 | 157758260 | 150 | -23.14 |
| ADediting_1580137 | chr5_157758267_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3194-5p | chr5 | 157758261 | 157758267 | 7mer-m8 | 157758250 | 157758268 | 146 | -28.5 |
| ADediting_1580137 | chr5_157758267_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6807-5p | chr5 | 157758264 | 157758270 | 7mer-m8 | 157758252 | 157758271 | 152 | -23.55 |
| ADediting_1580137 | chr5_157758267_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6858-3p | chr5 | 157758262 | 157758268 | 7mer-m8 | 157758245 | 157758269 | 154 | -24 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1183554 | chr5_157756904_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6807-5p | chr5 | 157756897 | 157756903 | 7mer-m8 | 157756882 | 157756904 | 148 | -27.23 |
| ADediting_1183555 | chr5_157756912_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-10399-5p | chr5 | 157756907 | 157756913 | 7mer-m8 | 157756893 | 157756914 | 144 | -11.21 |
| ADediting_1183555 | chr5_157756912_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6504-3p | chr5 | 157756907 | 157756913 | 7mer-m8 | 157756893 | 157756914 | 148 | -14.35 |
| ADediting_1183555 | chr5_157756912_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-7151-3p | chr5 | 157756905 | 157756912 | 8mer-1a | 157756892 | 157756912 | 144 | -16.51 |
| ADediting_1183556 | chr5_157756913_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-10399-5p | chr5 | 157756907 | 157756913 | 7mer-m8 | 157756893 | 157756914 | 144 | -11.21 |
| ADediting_1183556 | chr5_157756913_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-5089-5p | chr5 | 157756911 | 157756917 | 7mer-m8 | 157756896 | 157756918 | 148 | -14.13 |
| ADediting_1183556 | chr5_157756913_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6504-3p | chr5 | 157756907 | 157756913 | 7mer-m8 | 157756893 | 157756914 | 148 | -14.35 |
| ADediting_1183557 | chr5_157756918_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-5089-5p | chr5 | 157756911 | 157756917 | 7mer-m8 | 157756896 | 157756918 | 148 | -14.13 |
| ADediting_1183557 | chr5_157756918_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-512-3p | chr5 | 157756916 | 157756922 | 7mer-m8 | 157756902 | 157756923 | 149 | -15.51 |
| ADediting_1183557 | chr5_157756918_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6506-5p | chr5 | 157756912 | 157756918 | 7mer-m8 | 157756897 | 157756919 | 144 | -13.78 |
| ADediting_1183560 | chr5_157756979_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3152-3p | chr5 | 157756976 | 157756982 | 7mer-m8 | 157756963 | 157756983 | 145 | -18.08 |
| ADediting_1183561 | chr5_157756980_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3152-3p | chr5 | 157756976 | 157756982 | 7mer-m8 | 157756963 | 157756983 | 145 | -18.08 |
| ADediting_1183562 | chr5_157756982_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3152-3p | chr5 | 157756976 | 157756982 | 7mer-m8 | 157756963 | 157756983 | 145 | -18.08 |
| ADediting_1183563 | chr5_157756990_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6823-5p | chr5 | 157756988 | 157756994 | 7mer-m8 | 157756975 | 157756995 | 143 | -15.09 |
| ADediting_1183564 | chr5_157757001_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6832-5p | chr5 | 157756995 | 157757001 | 7mer-m8 | 157756980 | 157757002 | 140 | -18.87 |
| ADediting_1183570 | chr5_157757015_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4735-5p | chr5 | 157757013 | 157757019 | 7mer-m8 | 157756999 | 157757020 | 140 | -5.48 |
| ADediting_1183571 | chr5_157757016_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4735-5p | chr5 | 157757013 | 157757019 | 7mer-m8 | 157756999 | 157757020 | 140 | -5.48 |
| ADediting_1183572 | chr5_157757045_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-7151-3p | chr5 | 157757038 | 157757044 | 7mer-m8 | 157757025 | 157757045 | 140 | -17.27 |
| ADediting_1183572 | chr5_157757045_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-8052 | chr5 | 157757044 | 157757050 | 7mer-1a | 157757030 | 157757050 | 141 | -23.11 |
| ADediting_1183575 | chr5_157757072_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-1976 | chr5 | 157757069 | 157757076 | 8mer-1a | 157757057 | 157757076 | 146 | -19.34 |
| ADediting_1183575 | chr5_157757072_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6747-3p | chr5 | 157757067 | 157757074 | 8mer-1a | 157757053 | 157757074 | 147 | -22.85 |
| ADediting_1183579 | chr5_157757107_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-2276-3p | chr5 | 157757101 | 157757107 | 7mer-m8 | 157757087 | 157757108 | 144 | -17.09 |
| ADediting_1183585 | chr5_157758184_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3160-3p | chr5 | 157758181 | 157758187 | 7mer-m8 | 157758167 | 157758188 | 150 | -21.07 |
| ADediting_1183586 | chr5_157758208_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3689a-3p | chr5 | 157758201 | 157758207 | 7mer-m8 | 157758188 | 157758208 | 146 | -19.57 |
| ADediting_1183586 | chr5_157758208_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3689b-3p | chr5 | 157758201 | 157758207 | 7mer-m8 | 157758188 | 157758208 | 154 | -23.33 |
| ADediting_1183586 | chr5_157758208_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3689c | chr5 | 157758201 | 157758207 | 7mer-m8 | 157758188 | 157758208 | 154 | -23.33 |
| ADediting_1183586 | chr5_157758208_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-490-3p | chr5 | 157758205 | 157758211 | 7mer-m8 | 157758190 | 157758212 | 146 | -17.33 |
| ADediting_1183586 | chr5_157758208_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6779-5p | chr5 | 157758201 | 157758207 | 7mer-m8 | 157758190 | 157758208 | 148 | -21.48 |
| ADediting_1183586 | chr5_157758208_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6780a-5p | chr5 | 157758201 | 157758207 | 7mer-m8 | 157758188 | 157758208 | 153 | -23.8 |
| ADediting_1183591 | chr5_157758244_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-5690 | chr5 | 157758241 | 157758247 | 7mer-m8 | 157758228 | 157758248 | 145 | -16.91 |
| ADediting_1183595 | chr5_157758294_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3127-3p | chr5 | 157758291 | 157758297 | 7mer-m8 | 157758277 | 157758298 | 145 | -20.54 |
| ADediting_1183595 | chr5_157758294_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-320a-5p | chr5 | 157758289 | 157758295 | 7mer-m8 | 157758275 | 157758296 | 147 | -13.51 |
| ADediting_1183595 | chr5_157758294_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-5088-3p | chr5 | 157758290 | 157758296 | 7mer-m8 | 157758276 | 157758297 | 146 | -16.37 |
| ADediting_1183595 | chr5_157758294_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6756-3p | chr5 | 157758291 | 157758297 | 7mer-m8 | 157758279 | 157758298 | 143 | -16.61 |
| ADediting_1183595 | chr5_157758294_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-942-5p | chr5 | 157758288 | 157758294 | 7mer-m8 | 157758274 | 157758295 | 147 | -13.87 |
| ADediting_1183597 | chr5_157758311_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4794 | chr5 | 157758309 | 157758315 | 7mer-m8 | 157758294 | 157758316 | 147 | -21.79 |
| ADediting_1183597 | chr5_157758311_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-664a-5p | chr5 | 157758309 | 157758315 | 7mer-m8 | 157758289 | 157758316 | 147 | -16.15 |
| ADediting_1183598 | chr5_157758315_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4794 | chr5 | 157758309 | 157758315 | 7mer-m8 | 157758294 | 157758316 | 147 | -21.79 |
| ADediting_1183598 | chr5_157758315_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-664a-5p | chr5 | 157758309 | 157758315 | 7mer-m8 | 157758289 | 157758316 | 147 | -16.15 |
| ADediting_1183600 | chr5_157758349_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-12114 | chr5 | 157758345 | 157758351 | 7mer-m8 | 157758333 | 157758352 | 144 | -23.96 |
| ADediting_1183600 | chr5_157758349_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3165 | chr5 | 157758344 | 157758350 | 7mer-m8 | 157758327 | 157758351 | 144 | -15.14 |
| ADediting_1183600 | chr5_157758349_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3665 | chr5 | 157758347 | 157758353 | 7mer-m8 | 157758337 | 157758354 | 140 | -17.87 |
| ADediting_1183601 | chr5_157758358_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4478 | chr5 | 157758355 | 157758361 | 7mer-m8 | 157758347 | 157758362 | 149 | -22.24 |
| ADediting_1183601 | chr5_157758358_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4649-3p | chr5 | 157758352 | 157758358 | 7mer-m8 | 157758337 | 157758359 | 150 | -21 |
| ADediting_1183601 | chr5_157758358_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-485-5p | chr5 | 157758356 | 157758362 | 7mer-m8 | 157758342 | 157758363 | 149 | -16.01 |
| ADediting_1183601 | chr5_157758358_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-7160-5p | chr5 | 157758353 | 157758359 | 7mer-m8 | 157758343 | 157758360 | 144 | -18.41 |
| ADediting_1183602 | chr5_157758366_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-30b-3p | chr5 | 157758359 | 157758366 | 8mer-1a | 157758345 | 157758366 | 151 | -18.54 |
| ADediting_1183602 | chr5_157758366_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3689a-3p | chr5 | 157758359 | 157758366 | 8mer-1a | 157758345 | 157758366 | 149 | -22.05 |
| ADediting_1183602 | chr5_157758366_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3689b-3p | chr5 | 157758359 | 157758366 | 8mer-1a | 157758345 | 157758366 | 149 | -22.1 |
| ADediting_1183602 | chr5_157758366_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3689c | chr5 | 157758359 | 157758366 | 8mer-1a | 157758345 | 157758366 | 149 | -22.1 |
| ADediting_1183602 | chr5_157758366_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6779-5p | chr5 | 157758359 | 157758366 | 8mer-1a | 157758348 | 157758366 | 148 | -23.1 |
| ADediting_1183602 | chr5_157758366_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-887-5p | chr5 | 157758360 | 157758367 | 8mer-1a | 157758348 | 157758367 | 143 | -15.14 |
| ADediting_1183603 | chr5_157758367_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-887-5p | chr5 | 157758360 | 157758367 | 8mer-1a | 157758348 | 157758367 | 143 | -15.14 |
| ADediting_1580134 | chr5_157756929_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-150-5p | chr5 | 157756923 | 157756929 | 7mer-m8 | 157756909 | 157756930 | 140 | -15.8 |
| ADediting_1580134 | chr5_157756929_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-6778-3p | chr5 | 157756925 | 157756931 | 7mer-m8 | 157756912 | 157756932 | 143 | -14.47 |
| ADediting_1580135 | chr5_157756956_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-378a-5p | chr5 | 157756952 | 157756958 | 7mer-m8 | 157756937 | 157756959 | 148 | -22.9 |
| ADediting_1580137 | chr5_157758267_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-3157-5p | chr5 | 157758260 | 157758266 | 7mer-m8 | 157758242 | 157758267 | 151 | -21.97 |
| ADediting_1580137 | chr5_157758267_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-5702 | chr5 | 157758263 | 157758270 | 8mer-1a | 157758249 | 157758270 | 147 | -17.94 |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-5688 | chr5 | 157760561 | 157760567 | 7mer-m8 | 157760549 | 157760568 | 145 | -11.1 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-589-3p | chr5 | 157755867 | 157755873 | 7mer-m8 | 157755848 | 157755874 | 155 | -18.61 |
| ADediting_1535951 | chr14_100874558_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-337-3p | chr5 | 157755905 | 157755911 | 7mer-m8 | 157755894 | 157755912 | 155 | -20.51 |
| ADediting_1596844 | chr1_162342605_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-556-3p | chr5 | 157756436 | 157756442 | 7mer-m8 | 157756420 | 157756443 | 145 | -13.05 |
| ADediting_286380 | chr11_79422188_- | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-5579-3p | chr5 | 157760360 | 157760366 | 7mer-m8 | 157760346 | 157760367 | 140 | -10.06 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4775 | chr5 | 157759411 | 157759417 | 7mer-m8 | 157759399 | 157759418 | 157 | -12.34 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-5688 | chr5 | 157757485 | 157757491 | 7mer-m8 | 157757482 | 157757503 | 155 | -11.27 |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-5688 | chr5 | 157757492 | 157757498 | 7mer-m8 | 157757482 | 157757503 | 155 | -11.27 |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-5688 | chr5 | 157757496 | 157757502 | 7mer-m8 | 157757482 | 157757503 | 155 | -11.27 |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-5688 | chr5 | 157757993 | 157757999 | 7mer-m8 | 157757980 | 157758000 | 154 | -11.14 |
| ADediting_1391023 | chr8_140732605_- | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-151a-3p | chr5 | 157757613 | 157757620 | 8mer-1a | 157757599 | 157757620 | 154 | -18.68 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-641 | chr5 | 157760366 | 157760372 | 7mer-m8 | 157760350 | 157760373 | 146 | -12.11 |
| ADediting_1596844 | chr1_162342605_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-556-3p | chr5 | 157756143 | 157756149 | 7mer-m8 | 157756131 | 157756150 | 151 | -9.62 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-641 | chr5 | 157760366 | 157760372 | 7mer-m8 | 157760350 | 157760373 | 146 | -12.11 |
| ADediting_1643790 | chr3_121049689_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-5682 | chr5 | 157756861 | 157756867 | 7mer-m8 | 157756848 | 157756868 | 146 | -18.9 |
| ADediting_1643790 | chr3_121049689_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-5682 | chr5 | 157759516 | 157759522 | 7mer-m8 | 157759501 | 157759523 | 145 | -18.66 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-4775 | chr5 | 157757939 | 157757945 | 7mer-m8 | 157757925 | 157757946 | 141 | -7.33 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-5585-3p | chr5 | 157758471 | 157758478 | 8mer-1a | 157758457 | 157758478 | 145 | -8.45 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-5585-3p | chr5 | 157759490 | 157759497 | 8mer-1a | 157759476 | 157759497 | 144 | -8.4 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-5585-3p | chr5 | 157758471 | 157758478 | 8mer-1a | 157758457 | 157758478 | 145 | -8.45 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000155858.6 | ENST00000286307.6 | LSM11-201 | hsa-miR-5585-3p | chr5 | 157759490 | 157759497 | 8mer-1a | 157759476 | 157759497 | 144 | -8.4 |
| Differentially expressed gene-miRNA network |
| Differentially expressed mRNA-miRNA network |
 |
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The effects of the RNA editing to the stability of the RNA structures for LSM11 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000286307.6 | protein_coding |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_1183554 | ENST00000286307.6 | chr5_157756904_+ | 2762 | -2268.20 | -2268.60 | -2270.40 |
| ADediting_1183555 | ENST00000286307.6 | chr5_157756912_+ | 2770 | -2268.70 | -2268.60 | -2270.40 |
| ADediting_1183556 | ENST00000286307.6 | chr5_157756913_+ | 2771 | -2268.60 | -2268.60 | -2270.40 |
| ADediting_1183557 | ENST00000286307.6 | chr5_157756918_+ | 2776 | -2267.90 | -2268.60 | -2270.40 |
| ADediting_1580134 | ENST00000286307.6 | chr5_157756929_+ | 2787 | -2267.70 | -2268.60 | -2270.40 |
| ADediting_1183558 | ENST00000286307.6 | chr5_157756951_+ | 2809 | -2268.30 | -2268.60 | -2270.40 |
| ADediting_1580135 | ENST00000286307.6 | chr5_157756956_+ | 2814 | -2267.90 | -2268.60 | -2270.40 |
| ADediting_1183559 | ENST00000286307.6 | chr5_157756964_+ | 2822 | -2268.30 | -2268.60 | -2270.40 |
| ADediting_1183560 | ENST00000286307.6 | chr5_157756979_+ | 2837 | -2268.70 | -2268.60 | -2270.40 |
| ADediting_1183561 | ENST00000286307.6 | chr5_157756980_+ | 2838 | -2268.60 | -2268.60 | -2270.40 |
| ADediting_1183562 | ENST00000286307.6 | chr5_157756982_+ | 2840 | -2268.20 | -2268.60 | -2270.40 |
| ADediting_1183563 | ENST00000286307.6 | chr5_157756990_+ | 2848 | -2268.60 | -2268.60 | -2270.40 |
| ADediting_1183564 | ENST00000286307.6 | chr5_157757001_+ | 2859 | -2268.60 | -2268.60 | -2270.40 |
| ADediting_1183565 | ENST00000286307.6 | chr5_157757004_+ | 2862 | -2268.70 | -2268.60 | -2270.40 |
| ADediting_1183566 | ENST00000286307.6 | chr5_157757005_+ | 2863 | -2268.70 | -2268.60 | -2270.40 |
| ADediting_1183567 | ENST00000286307.6 | chr5_157757006_+ | 2864 | -2268.70 | -2268.60 | -2270.40 |
| ADediting_1183568 | ENST00000286307.6 | chr5_157757007_+ | 2865 | -2268.70 | -2268.60 | -2270.40 |
| ADediting_1183569 | ENST00000286307.6 | chr5_157757008_+ | 2866 | -2268.60 | -2268.60 | -2270.40 |
| ADediting_1183570 | ENST00000286307.6 | chr5_157757015_+ | 2873 | -2268.70 | -2268.60 | -2270.40 |
| ADediting_1183571 | ENST00000286307.6 | chr5_157757016_+ | 2874 | -2268.30 | -2268.60 | -2270.40 |
| ADediting_1183572 | ENST00000286307.6 | chr5_157757045_+ | 2903 | -2269.60 | -2268.60 | -2270.40 |
| ADediting_1183573 | ENST00000286307.6 | chr5_157757051_+ | 2909 | -2267.90 | -2268.60 | -2270.40 |
| ADediting_1183574 | ENST00000286307.6 | chr5_157757055_+ | 2913 | -2268.60 | -2268.60 | -2270.40 |
| ADediting_1183575 | ENST00000286307.6 | chr5_157757072_+ | 2930 | -2267.90 | -2268.60 | -2270.40 |
| ADediting_1183576 | ENST00000286307.6 | chr5_157757078_+ | 2936 | -2268.60 | -2268.60 | -2270.40 |
| ADediting_1183577 | ENST00000286307.6 | chr5_157757086_+ | 2944 | -2268.10 | -2268.60 | -2270.40 |
| ADediting_1183578 | ENST00000286307.6 | chr5_157757087_+ | 2945 | -2268.60 | -2268.60 | -2270.40 |
| ADediting_1183579 | ENST00000286307.6 | chr5_157757107_+ | 2965 | -2267.90 | -2268.60 | -2270.40 |
| ADediting_1183580 | ENST00000286307.6 | chr5_157757115_+ | 2973 | -2272.00 | -2268.60 | -2270.40 |
| ADediting_1183581 | ENST00000286307.6 | chr5_157757116_+ | 2974 | -2268.20 | -2268.60 | -2270.40 |
| ADediting_1183582 | ENST00000286307.6 | chr5_157757123_+ | 2981 | -2274.00 | -2268.60 | -2270.40 |
| ADediting_1183583 | ENST00000286307.6 | chr5_157757172_+ | 3030 | -2268.70 | -2268.60 | -2270.40 |
| ADediting_1183584 | ENST00000286307.6 | chr5_157758110_+ | 3968 | -2268.70 | -2268.60 | -2270.40 |
| ADediting_1183585 | ENST00000286307.6 | chr5_157758184_+ | 4042 | -2272.20 | -2268.60 | -2270.40 |
| ADediting_1183586 | ENST00000286307.6 | chr5_157758208_+ | 4066 | -2274.80 | -2268.60 | -2270.40 |
| ADediting_1183587 | ENST00000286307.6 | chr5_157758214_+ | 4072 | -2267.40 | -2268.60 | -2270.40 |
| ADediting_1183588 | ENST00000286307.6 | chr5_157758215_+ | 4073 | -2268.50 | -2268.60 | -2270.40 |
| ADediting_1183589 | ENST00000286307.6 | chr5_157758219_+ | 4077 | -2268.90 | -2268.60 | -2270.40 |
| ADediting_1183590 | ENST00000286307.6 | chr5_157758232_+ | 4090 | -2267.30 | -2268.60 | -2270.40 |
| ADediting_1183591 | ENST00000286307.6 | chr5_157758244_+ | 4102 | -2268.30 | -2268.60 | -2270.40 |
| ADediting_1580136 | ENST00000286307.6 | chr5_157758257_+ | 4115 | -2268.20 | -2268.60 | -2270.40 |
| ADediting_1580137 | ENST00000286307.6 | chr5_157758267_+ | 4125 | -2275.80 | -2268.60 | -2270.40 |
| ADediting_1183592 | ENST00000286307.6 | chr5_157758280_+ | 4138 | -2268.60 | -2268.60 | -2270.40 |
| ADediting_1183593 | ENST00000286307.6 | chr5_157758286_+ | 4144 | -2268.30 | -2268.60 | -2270.40 |
| ADediting_1183594 | ENST00000286307.6 | chr5_157758289_+ | 4147 | -2268.30 | -2268.60 | -2270.40 |
| ADediting_1183595 | ENST00000286307.6 | chr5_157758294_+ | 4152 | -2271.20 | -2268.60 | -2270.40 |
| ADediting_1183596 | ENST00000286307.6 | chr5_157758303_+ | 4161 | -2267.60 | -2268.60 | -2270.40 |
| ADediting_1183597 | ENST00000286307.6 | chr5_157758311_+ | 4169 | -2268.30 | -2268.60 | -2270.40 |
| ADediting_1183598 | ENST00000286307.6 | chr5_157758315_+ | 4173 | -2267.90 | -2268.60 | -2270.40 |
| ADediting_1183599 | ENST00000286307.6 | chr5_157758328_+ | 4186 | -2268.60 | -2268.60 | -2270.40 |
| ADediting_1183600 | ENST00000286307.6 | chr5_157758349_+ | 4207 | -2268.20 | -2268.60 | -2270.40 |
| ADediting_1183601 | ENST00000286307.6 | chr5_157758358_+ | 4216 | -2267.90 | -2268.60 | -2270.40 |
| ADediting_1183602 | ENST00000286307.6 | chr5_157758366_+ | 4224 | -2268.30 | -2268.60 | -2270.40 |
| ADediting_1183603 | ENST00000286307.6 | chr5_157758367_+ | 4225 | -2268.70 | -2268.60 | -2270.40 |
| ADediting_1183604 | ENST00000286307.6 | chr5_157758368_+ | 4226 | -2268.30 | -2268.60 | -2270.40 |
| ADediting_1183605 | ENST00000286307.6 | chr5_157758380_+ | 4238 | -2268.60 | -2268.60 | -2270.40 |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for LSM11 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| CER | ADediting_1183556 | chr5_157756913_+ | 0.000136435701003793 | 0.306490356813687 | 2.28585559046825e-07 | 0.407423418217471 | 0.0569729333277174 | 0.155774608114693 |
| CER | ADediting_1183558 | chr5_157756951_+ | 3.52729262558113e-06 | 0.368329032347365 | 1.37475149265927e-08 | 0.442980493925074 | 0.0842096870068485 | 0.141463339287903 |
| CER | ADediting_1183559 | chr5_157756964_+ | 0.000788819684003802 | 0.271186635213254 | 9.94791509230381e-05 | 0.312392088646732 | 0.0319333169196375 | 0.175266493219749 |
| CER | ADediting_1183561 | chr5_157756980_+ | 3.61458789818239e-10 | 0.483670849871334 | 6.1801113217656e-11 | 0.501652025342847 | 0.255512057804142 | 0.0934190904451887 |
| CER | ADediting_1183563 | chr5_157756990_+ | 3.07543710851273e-14 | 0.568901828090936 | 2.21866834858819e-14 | 0.571478527399075 | 0.0858322460592994 | 0.140736531836908 |
| TCX | ADediting_1183563 | chr5_157756990_+ | 8.28092043572269e-05 | 0.315762568607142 | 0.000649204926187793 | 0.275341188848461 | 0.0635538330790569 | -0.15187489038943 |
| CER | ADediting_1183564 | chr5_157757001_+ | 0.00215185861424903 | 0.248669051951347 | 5.49900253037099e-05 | 0.323144294203296 | 0.907122873499023 | -0.00960607042328973 |
| CER | ADediting_1183565 | chr5_157757004_+ | 2.04238277874411e-06 | 0.376549747111938 | 3.63277071599129e-06 | 0.367879261714906 | 0.0012135478852429 | 0.261759638537103 |
| CER | ADediting_1183566 | chr5_157757005_+ | 0.000108620749866932 | 0.310762097133062 | 0.00218741237941889 | 0.248284482484808 | 0.219917760253686 | 0.100751207858004 |
| CER | ADediting_1183568 | chr5_157757007_+ | 0.0118352622851912 | 0.205040597786038 | 0.000181512915618685 | 0.301047788136391 | 0.0128823968715103 | 0.202646806614017 |
| CER | ADediting_1183569 | chr5_157757008_+ | 0.00811178312437883 | 0.215415948498604 | 1.92959402760294e-05 | 0.341205736510857 | 0.525398526214635 | 0.0522529552712103 |
| CER | ADediting_1183571 | chr5_157757016_+ | 9.45640133474142e-05 | 0.313327295970191 | 6.1056441257493e-05 | 0.321275536042091 | 0.178977326429787 | 0.110317460999135 |
| TCX | ADediting_1183571 | chr5_157757016_+ | 0.000142679366676549 | 0.305644257916345 | 0.00010615677057397 | 0.311188433538239 | 0.242909091965294 | -0.0959285144570345 |
| CER | ADediting_1183575 | chr5_157757072_+ | 1.30118546485384e-10 | 0.494199271985821 | 1.55451443583893e-11 | 0.515008980469487 | 0.000671659817893961 | 0.274620613457953 |
| TCX | ADediting_1183575 | chr5_157757072_+ | 0.000127990496260364 | 0.307694152383083 | 0.00016727372850269 | 0.30261621950702 | 0.19809203516354 | -0.105673156611819 |
| TCX | ADediting_1183576 | chr5_157757078_+ | 3.38995653628089e-05 | 0.331627924090485 | 7.16296934527448e-05 | 0.318399607242665 | 0.490860776534868 | -0.0566806619595536 |
| CER | ADediting_1183578 | chr5_157757087_+ | 0.000225993131756938 | 0.296795464541154 | 7.12350146866304e-05 | 0.318499587838974 | 0.00236949801392664 | 0.246399619634355 |
| CER | ADediting_1183579 | chr5_157757107_+ | 1.1833698834285e-05 | 0.349268517421719 | 7.22689682797555e-07 | 0.39158719136429 | 0.0306752588197715 | 0.176554432239797 |
| CER | ADediting_1183580 | chr5_157757115_+ | 5.64364190141489e-12 | 0.52445802147023 | 2.30509161623632e-11 | 0.511255063134698 | 0.00077224772610599 | 0.271642663890852 |
| TCX | ADediting_1183580 | chr5_157757115_+ | 1.25108546106486e-06 | 0.383736979204784 | 4.05904069827663e-06 | 0.366179543683521 | 0.609476412818212 | -0.0420416081216687 |
| CER | ADediting_1183581 | chr5_157757116_+ | 2.78295017835449e-20 | 0.662178084985352 | 1.12536058575941e-20 | 0.667272440096065 | 5.68740463566648e-06 | 0.360951848781512 |
| TCX | ADediting_1183581 | chr5_157757116_+ | 1.021552824846e-12 | 0.539764022315018 | 1.10347184353563e-12 | 0.539089592523008 | 0.0832697522135799 | -0.141889518299836 |
| CER | ADediting_1183582 | chr5_157757123_+ | 8.66417513615557e-10 | 0.474369505422722 | 6.54917488924912e-13 | 0.543622006494984 | 0.00478233366659621 | 0.229204012165196 |
| DLPFC | ADediting_1183585 | chr5_157758184_+ | 6.35906102555274e-08 | 0.301229209123784 | 5.97677706944775e-09 | 0.322822576304365 | 0.0466290148863695 | 0.113098844236143 |
| CER | ADediting_1183585 | chr5_157758184_+ | 6.07755976387102e-09 | 0.452583850612782 | 1.77702068227232e-12 | 0.534890120395116 | 0.00208695412579974 | 0.249386213184395 |
| TCX | ADediting_1183585 | chr5_157758184_+ | 3.80878827884843e-11 | 0.506402477525024 | 3.41336212061607e-14 | 0.568074454223285 | 0.3471513969434 | -0.0772928929461811 |
| CER | ADediting_1183586 | chr5_157758208_+ | 1.60948864772505e-07 | 0.412091491879329 | 3.29175999623026e-09 | 0.459607584701761 | 0.00684268755097458 | 0.219942983738482 |
| TCX | ADediting_1183586 | chr5_157758208_+ | 1.03068108589604e-12 | 0.539686319336323 | 9.16211342603392e-17 | 0.611703831927666 | 0.582244804066886 | -0.0452718697519043 |
| STG | ADediting_1183586 | chr5_157758208_+ | 0.000954107207991672 | 0.354020818970678 | 0.000288371488408869 | 0.385919377918386 | 0.0772016232941057 | -0.193883862070546 |
| TCX | ADediting_1183587 | chr5_157758214_+ | 0.263712177447973 | 0.0918318085368674 | 0.000175636260028236 | 0.301680711162894 | 0.117505948374845 | -0.128353012578033 |
| CER | ADediting_1183588 | chr5_157758215_+ | 0.00117664719590165 | 0.26244683160922 | 8.15369829999597e-07 | 0.389878496863047 | 0.0121802098643104 | 0.204232204611989 |
| TCX | ADediting_1183588 | chr5_157758215_+ | 1.0298549044302e-05 | 0.351519947599169 | 2.42532487700398e-07 | 0.406628313435489 | 0.395732366575483 | -0.0698419478576211 |
| TCX | ADediting_1183589 | chr5_157758219_+ | 0.00232900639121891 | 0.246807122051574 | 0.000168522599745876 | 0.302473780874102 | 0.0700345646322177 | -0.148345049722508 |
| CER | ADediting_1183592 | chr5_157758280_+ | 1.76558969875746e-06 | 0.37870333573177 | 4.67174849400781e-11 | 0.504407053251684 | 0.0006593484508724 | 0.275012888688773 |
| TCX | ADediting_1183592 | chr5_157758280_+ | 0.0226383885531283 | 0.186047311740163 | 5.33225119995276e-07 | 0.39585056965459 | 0.454553277650881 | -0.0615181014640689 |
| CER | ADediting_1183593 | chr5_157758286_+ | 1.32219762467153e-09 | 0.469770403155977 | 1.45026995260123e-14 | 0.574800118702915 | 0.000603356320087166 | 0.276886651290734 |
| TCX | ADediting_1183593 | chr5_157758286_+ | 9.84555943716535e-12 | 0.519304389167831 | 7.36112965937667e-17 | 0.613196474230014 | 0.429927941564538 | -0.0649223731330685 |
| CER | ADediting_1183594 | chr5_157758289_+ | 5.8729848628534e-06 | 0.360449393456617 | 5.29966637037154e-09 | 0.454166494542757 | 0.00815504600251307 | 0.215273008902524 |
| TCX | ADediting_1183594 | chr5_157758289_+ | 8.82759386018974e-09 | 0.448228996931548 | 2.82314617311781e-13 | 0.550792319338337 | 0.218222413952211 | -0.101120674141759 |
| CER | ADediting_1183595 | chr5_157758294_+ | 7.99476778007467e-07 | 0.39015790328617 | 1.58371238394186e-09 | 0.46778575700406 | 0.0364827642764952 | 0.170941692798426 |
| TCX | ADediting_1183595 | chr5_157758294_+ | 5.34409982358208e-07 | 0.395819660313548 | 4.11132229294375e-07 | 0.399450126068715 | 0.127536311536417 | -0.12498219186547 |
| CER | ADediting_1183596 | chr5_157758303_+ | 2.25843620330228e-05 | 0.338562721250759 | 8.98797441097585e-07 | 0.388491941736935 | 0.0435223206758396 | 0.165071505706163 |
| CER | ADediting_1183597 | chr5_157758311_+ | 4.99186324103778e-18 | 0.630927329997876 | 7.6606906920114e-15 | 0.579717157841633 | 0.000462485152029201 | 0.282423461030293 |
| TCX | ADediting_1183597 | chr5_157758311_+ | 2.98163102131644e-15 | 0.586839257143428 | 9.79732847872231e-16 | 0.595021369288759 | 0.118113965822035 | -0.128142461691615 |
| IFG | ADediting_1183597 | chr5_157758311_+ | 0.101312134114529 | 0.335304907866494 | 0.0490951481256333 | 0.397514178600506 | 0.374907782271323 | -0.185410086575383 |
| CER | ADediting_1183598 | chr5_157758315_+ | 2.10103564664312e-11 | 0.51214241275618 | 1.0821657628219e-12 | 0.53926020100156 | 0.00255548919035874 | 0.24460528334296 |
| TCX | ADediting_1183598 | chr5_157758315_+ | 7.99977356878687e-06 | 0.35556922499664 | 7.98694409317275e-06 | 0.35559477843184 | 0.925335737960306 | 0.00771621487303804 |
| CER | ADediting_1183599 | chr5_157758328_+ | 9.5356975632128e-08 | 0.418927468389477 | 9.54427404779939e-07 | 0.387634006487856 | 0.100571689537149 | 0.134591103762672 |
| CER | ADediting_1183601 | chr5_157758358_+ | 1.74923855509172e-05 | 0.342841827325417 | 1.95559569679191e-07 | 0.409508534502762 | 0.324448923049479 | 0.0809993415417427 |
| CER | ADediting_1183604 | chr5_157758368_+ | 1.26648759406891e-08 | 0.443959077631953 | 3.26992517722481e-08 | 0.432449846227834 | 0.0638800406556282 | 0.151690352602328 |
| CER | ADediting_1183605 | chr5_157758380_+ | 1.28468029361909e-09 | 0.470085777964682 | 9.40398417814187e-11 | 0.497471928545103 | 0.023000229241475 | 0.185561991445761 |
| TCX | ADediting_1183605 | chr5_157758380_+ | 1.86667915690473e-05 | 0.341759445337139 | 4.09574648982832e-08 | 0.429653525992502 | 0.0389554135371146 | -0.168779142801315 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 1.04483277103656e-63 | 0.776381665747444 | 8.21193705834847e-41 | 0.664205556458014 | 3.09666642927787e-09 | 0.328534637359666 |
| AC | 3.29925075517755e-51 | 0.774362569705008 | 6.83763591760725e-49 | 0.762947719667958 | 2.02271073748827e-06 | 0.295242958650001 |
| PCC | 1.26940569559765e-59 | 0.868893713596593 | 6.0382310022756e-86 | 0.933210857554682 | 0.545406591060609 | 0.0440192216590536 |
| CER | 6.97850455496881e-54 | 0.895450861356895 | 5.76232786764714e-39 | 0.827713912987236 | 0.00446341856351396 | 0.230948037330984 |
| TCX | 2.40718980733918e-33 | 0.790666554923311 | 2.58809776596124e-40 | 0.835466393935525 | 0.00445205482928348 | -0.231012219671085 |
| FP | 4.03812739801181e-16 | 0.560598543970829 | 3.18093501623559e-31 | 0.732638847706426 | 0.440900351788481 | -0.0581250846494202 |
| IFG | 0.000498097720386142 | 0.645102436165427 | 0.00425260490363016 | 0.551672243607404 | 0.312119624148824 | -0.21066172381282 |
| PG | 1.30358336682539e-43 | 0.805140888582952 | 7.1714432621951e-43 | 0.801056664675774 | 0.00686332946433067 | -0.197596975398352 |
| STG | 1.48235039399427e-14 | 0.718151079541505 | 3.62811780221061e-20 | 0.80355997108536 | 0.114111580229317 | -0.173679333925168 |
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Relation with AD stages for LSM11 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| CER | ADediting_1183581 | chr5_157757116_+ | 3.57577717015881e-06 | 0.429180705503941 |
| CER | ADediting_1183582 | chr5_157757123_+ | 0.000516085438055737 | 0.328613520120968 |
| CER | ADediting_1183585 | chr5_157758184_+ | 3.87265763703198e-06 | 0.427800092483757 |
| CER | ADediting_1183586 | chr5_157758208_+ | 2.96261049243416e-06 | 0.432413065830205 |
| CER | ADediting_1183588 | chr5_157758215_+ | 8.36705759778202e-05 | 0.369338236719744 |
| CER | ADediting_1183592 | chr5_157758280_+ | 6.29838855404327e-08 | 0.492188539054526 |
| CER | ADediting_1183593 | chr5_157758286_+ | 2.0015262432811e-06 | 0.439046592622523 |
| CER | ADediting_1183595 | chr5_157758294_+ | 0.000312798577946674 | 0.340383658548495 |
| CER | ADediting_1183596 | chr5_157758303_+ | 0.000198086015182993 | 0.350732346413908 |
| CER | ADediting_1183597 | chr5_157758311_+ | 9.92734390184265e-07 | 0.450569795141127 |
| CER | ADediting_1183598 | chr5_157758315_+ | 0.000905262439398323 | 0.314818990419777 |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| CER | 8.62196451200622e-06 | 0.413598370422306 |
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RelatedDrugs for LSM11 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for LSM11 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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