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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited versus non-edited samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with AD stages

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene


Gene summary for ATF7-NPFF

check button Gene summary
Gene informationGene symbol

ATF7-NPFF

Gene ID

114108587

Gene nameATF7-NPFF readthrough
Synonyms-
Cytomap

-

Type of geneprotein-coding
DescriptionATF7-NPFF readthrough protein
Modification date20200303
UniProtAcc

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for ATF7-NPFF

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_355466(53508096, -), ADediting_355467(53508101, -), ADediting_355468(53508102, -), ADediting_355469(53508109, -), ADediting_355470(53508110, -), ADediting_355471(53508132, -), ADediting_355472(53508140, -), ADediting_355473(53508167, -), ADediting_355474(53508177, -), ADediting_355475(53508186, -), ADediting_355476(53508203, -), ADediting_355477(53508207, -), ADediting_355478(53508213, -), ADediting_355479(53508231, -), ADediting_355480(53508305, -), ADediting_355481(53508317, -), ADediting_355482(53508357, -), ADediting_355483(53508390, -), ADediting_355484(53508394, -), ADediting_355485(53508411, -), ADediting_355486(53508416, -), ADediting_355487(53508422, -), ADediting_355488(53508436, -), ADediting_355489(53508438, -), ADediting_355490(53508448, -), ADediting_355491(53508460, -), ADediting_355492(53508477, -), ADediting_355493(53508478, -), ADediting_355494(53508508, -), ADediting_355495(53508513, -), ADediting_355496(53508534, -), ADediting_355497(53508553, -), ADediting_355498(53509611, -), ADediting_355499(53509617, -), ADediting_355500(53509634, -), ADediting_355501(53509643, -), ADediting_355502(53509644, -), ADediting_355503(53509660, -), ADediting_355504(53509662, -), ADediting_355505(53509685, -), ADediting_355506(53509688, -), ADediting_355507(53509699, -), ADediting_355508(53509724, -), ADediting_355509(53509725, -), ADediting_355510(53509733, -), ADediting_355511(53510142, -), ADediting_355512(53510168, -), ADediting_355513(53510177, -), ADediting_355514(53510204, -), ADediting_355515(53510216, -), ADediting_355516(53510217, -), ADediting_355517(53510218, -), ADediting_355518(53510227, -), ADediting_355519(53510257, -), ADediting_355520(53510258, -), ADediting_355521(53510305, -), ADediting_355522(53511322, -), ADediting_355523(53511373, -), ADediting_355524(53511386, -), ADediting_355525(53511523, -), ADediting_355526(53517925, -), ADediting_355527(53517940, -), ADediting_355528(53517993, -), ADediting_355529(53518003, -), ADediting_355530(53518009, -), ADediting_355531(53518016, -), ADediting_355532(53518025, -), ADediting_355533(53518061, -), ADediting_355534(53518068, -), ADediting_355535(53518069, -), ADediting_355536(53518073, -), ADediting_355537(53518078, -), ADediting_355538(53518111, -), ADediting_355539(53518138, -), ADediting_355540(53518140, -), ADediting_355541(53518852, -), ADediting_355542(53518856, -), ADediting_355543(53518864, -), ADediting_355544(53518930, -), ADediting_355545(53518991, -), ADediting_355546(53519007, -), ADediting_355547(53519010, -), ADediting_355548(53519445, -), ADediting_355549(53519451, -), ADediting_355550(53519457, -), ADediting_355551(53519458, -), ADediting_355552(53519472, -), ADediting_355553(53519505, -), ADediting_355554(53519510, -), ADediting_355555(53519519, -), ADediting_355556(53519522, -), ADediting_355557(53519536, -), ADediting_355558(53519539, -), ADediting_355559(53519580, -), ADediting_355560(53519590, -), ADediting_355561(53519875, -), ADediting_355562(53519885, -), ADediting_355563(53519907, -), ADediting_355564(53519914, -), ADediting_355565(53519936, -), ADediting_355566(53520013, -), ADediting_355567(53520018, -), ADediting_355568(53520027, -), ADediting_355569(53520320, -), ADediting_355570(53520332, -), ADediting_355571(53520374, -), ADediting_355572(53520385, -), ADediting_355573(53520392, -), ADediting_355574(53520394, -), ADediting_355575(53520411, -), ADediting_355576(53520434, -), ADediting_355577(53520443, -), ADediting_355578(53520454, -), ADediting_355579(53520456, -), ADediting_355580(53520465, -), ADediting_355581(53520466, -), ADediting_355582(53521121, -), ADediting_355583(53521130, -), ADediting_355584(53521131, -), ADediting_355585(53521141, -), ADediting_355586(53521157, -), ADediting_355587(53521172, -), ADediting_355588(53521173, -), ADediting_355589(53521176, -), ADediting_355590(53521238, -), ADediting_355591(53521242, -), ADediting_355592(53522324, -), ADediting_355593(53522434, -), ADediting_355594(53522745, -), ADediting_355595(53522820, -), ADediting_355596(53525976, -), ADediting_355597(53526082, -), ADediting_355598(53526110, -), ADediting_355599(53526156, -), ADediting_355600(53526729, -), ADediting_355601(53526743, -), ADediting_355602(53526768, -), ADediting_355603(53527601, -), ADediting_355604(53528528, -), ADediting_355605(53528641, -), ADediting_355606(53528663, -), ADediting_355607(53528680, -), ADediting_355608(53528762, -), ADediting_355609(53529564, -), ADediting_355610(53529856, -), ADediting_355611(53529864, -), ADediting_355612(53529947, -), ADediting_355613(53529971, -), ADediting_355614(53530014, -), ADediting_355615(53530021, -), ADediting_355616(53530719, -), ADediting_355617(53530740, -), ADediting_355618(53530745, -), ADediting_355619(53530746, -), ADediting_355620(53530772, -), ADediting_355621(53530777, -), ADediting_355622(53530779, -), ADediting_355623(53530788, -), ADediting_355624(53530805, -), ADediting_355625(53530812, -), ADediting_355626(53530841, -), ADediting_355627(53531195, -), ADediting_355628(53531322, -), ADediting_355629(53621531, -), ADediting_355630(53621667, -), ADediting_1533171(53508142, -), ADediting_1533172(53508147, -), ADediting_1533173(53508158, -), ADediting_1533174(53508183, -), ADediting_1533175(53508221, -), ADediting_1533176(53508412, -), ADediting_1533177(53509621, -), ADediting_1533178(53509627, -), ADediting_1533179(53509638, -), ADediting_1533180(53510212, -), ADediting_1533181(53517748, -), ADediting_1533182(53517762, -), ADediting_1533183(53517768, -), ADediting_1533184(53518060, -), ADediting_1533185(53518083, -), ADediting_1533186(53518137, -), ADediting_1533187(53518572, -), ADediting_1533188(53518595, -), ADediting_1533189(53518596, -), ADediting_1533190(53518816, -), ADediting_1533191(53519558, -), ADediting_1533192(53519776, -), ADediting_1533193(53519839, -), ADediting_1533194(53522804, -), ADediting_1533195(53529005, -), ADediting_1533196(53529948, -),

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RNA editing positional annotations for ATF7-NPFF using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_355466chr12_53508096_-intronic
ADediting_355467chr12_53508101_-intronic
ADediting_355468chr12_53508102_-intronic
ADediting_355469chr12_53508109_-intronic
ADediting_355470chr12_53508110_-intronic
ADediting_355471chr12_53508132_-intronic
ADediting_355472chr12_53508140_-intronic
ADediting_355473chr12_53508167_-intronic
ADediting_355474chr12_53508177_-intronic
ADediting_355475chr12_53508186_-intronic
ADediting_355476chr12_53508203_-intronic
ADediting_355477chr12_53508207_-intronic
ADediting_355478chr12_53508213_-intronic
ADediting_355479chr12_53508231_-intronic
ADediting_355480chr12_53508305_-intronic
ADediting_355481chr12_53508317_-intronic
ADediting_355482chr12_53508357_-intronic
ADediting_355483chr12_53508390_-intronic
ADediting_355484chr12_53508394_-intronic
ADediting_355485chr12_53508411_-intronic
ADediting_355486chr12_53508416_-intronic
ADediting_355487chr12_53508422_-intronic
ADediting_355488chr12_53508436_-intronic
ADediting_355489chr12_53508438_-intronic
ADediting_355490chr12_53508448_-intronic
ADediting_355491chr12_53508460_-intronic
ADediting_355492chr12_53508477_-intronic
ADediting_355493chr12_53508478_-intronic
ADediting_355494chr12_53508508_-intronic
ADediting_355495chr12_53508513_-intronic
ADediting_355496chr12_53508534_-intronic
ADediting_355497chr12_53508553_-intronic
ADediting_355498chr12_53509611_-intronic
ADediting_355499chr12_53509617_-intronic
ADediting_355500chr12_53509634_-intronic
ADediting_355501chr12_53509643_-intronic
ADediting_355502chr12_53509644_-intronic
ADediting_355503chr12_53509660_-intronic
ADediting_355504chr12_53509662_-intronic
ADediting_355505chr12_53509685_-intronic
ADediting_355506chr12_53509688_-intronic
ADediting_355507chr12_53509699_-intronic
ADediting_355508chr12_53509724_-intronic
ADediting_355509chr12_53509725_-intronic
ADediting_355510chr12_53509733_-intronic
ADediting_355511chr12_53510142_-intronic
ADediting_355512chr12_53510168_-intronic
ADediting_355513chr12_53510177_-intronic
ADediting_355514chr12_53510204_-intronic
ADediting_355515chr12_53510216_-intronic
ADediting_355516chr12_53510217_-intronic
ADediting_355517chr12_53510218_-intronic
ADediting_355518chr12_53510227_-intronic
ADediting_355519chr12_53510257_-intronic
ADediting_355520chr12_53510258_-intronic
ADediting_355521chr12_53510305_-intronic
ADediting_355522chr12_53511322_-intronic
ADediting_355523chr12_53511373_-intronic
ADediting_355524chr12_53511386_-intronic
ADediting_355525chr12_53511523_-intronic
ADediting_355526chr12_53517925_-intronic
ADediting_355527chr12_53517940_-intronic
ADediting_355528chr12_53517993_-intronic
ADediting_355529chr12_53518003_-intronic
ADediting_355530chr12_53518009_-intronic
ADediting_355531chr12_53518016_-intronic
ADediting_355532chr12_53518025_-intronic
ADediting_355533chr12_53518061_-intronic
ADediting_355534chr12_53518068_-intronic
ADediting_355535chr12_53518069_-intronic
ADediting_355536chr12_53518073_-intronic
ADediting_355537chr12_53518078_-intronic
ADediting_355538chr12_53518111_-intronic
ADediting_355539chr12_53518138_-intronic
ADediting_355540chr12_53518140_-intronic
ADediting_355541chr12_53518852_-intronic
ADediting_355542chr12_53518856_-intronic
ADediting_355543chr12_53518864_-intronic
ADediting_355544chr12_53518930_-intronic
ADediting_355545chr12_53518991_-intronic
ADediting_355546chr12_53519007_-intronic
ADediting_355547chr12_53519010_-intronic
ADediting_355548chr12_53519445_-intronic
ADediting_355549chr12_53519451_-intronic
ADediting_355550chr12_53519457_-intronic
ADediting_355551chr12_53519458_-intronic
ADediting_355552chr12_53519472_-intronic
ADediting_355553chr12_53519505_-intronic
ADediting_355554chr12_53519510_-intronic
ADediting_355555chr12_53519519_-intronic
ADediting_355556chr12_53519522_-intronic
ADediting_355557chr12_53519536_-intronic
ADediting_355558chr12_53519539_-intronic
ADediting_355559chr12_53519580_-intronic
ADediting_355560chr12_53519590_-intronic
ADediting_355561chr12_53519875_-intronic
ADediting_355562chr12_53519885_-intronic
ADediting_355563chr12_53519907_-intronic
ADediting_355564chr12_53519914_-intronic
ADediting_355565chr12_53519936_-intronic
ADediting_355566chr12_53520013_-intronic
ADediting_355567chr12_53520018_-intronic
ADediting_355568chr12_53520027_-intronic
ADediting_355569chr12_53520320_-intronic
ADediting_355570chr12_53520332_-intronic
ADediting_355571chr12_53520374_-intronic
ADediting_355572chr12_53520385_-intronic
ADediting_355573chr12_53520392_-intronic
ADediting_355574chr12_53520394_-intronic
ADediting_355575chr12_53520411_-intronic
ADediting_355576chr12_53520434_-intronic
ADediting_355577chr12_53520443_-intronic
ADediting_355578chr12_53520454_-intronic
ADediting_355579chr12_53520456_-intronic
ADediting_355580chr12_53520465_-intronic
ADediting_355581chr12_53520466_-intronic
ADediting_355582chr12_53521121_-intronic
ADediting_355583chr12_53521130_-intronic
ADediting_355584chr12_53521131_-intronic
ADediting_355585chr12_53521141_-intronic
ADediting_355586chr12_53521157_-intronic
ADediting_355587chr12_53521172_-intronic
ADediting_355588chr12_53521173_-intronic
ADediting_355589chr12_53521176_-intronic
ADediting_355590chr12_53521238_-intronic
ADediting_355591chr12_53521242_-intronic
ADediting_355592chr12_53522324_-intronic
ADediting_355593chr12_53522434_-intronic
ADediting_355594chr12_53522745_-intronic
ADediting_355595chr12_53522820_-intronic
ADediting_355596chr12_53525976_-intronic
ADediting_355597chr12_53526082_-intronic
ADediting_355598chr12_53526110_-intronic
ADediting_355599chr12_53526156_-intronic
ADediting_355600chr12_53526729_-intronic
ADediting_355601chr12_53526743_-intronic
ADediting_355602chr12_53526768_-intronic
ADediting_355603chr12_53527601_-intronic
ADediting_355604chr12_53528528_-intronic
ADediting_355605chr12_53528641_-intronic
ADediting_355606chr12_53528663_-intronic
ADediting_355607chr12_53528680_-intronic
ADediting_355608chr12_53528762_-intronic
ADediting_355609chr12_53529564_-intronic
ADediting_355610chr12_53529856_-intronic
ADediting_355611chr12_53529864_-intronic
ADediting_355612chr12_53529947_-intronic
ADediting_355613chr12_53529971_-intronic
ADediting_355614chr12_53530014_-intronic
ADediting_355615chr12_53530021_-intronic
ADediting_355616chr12_53530719_-intronic
ADediting_355617chr12_53530740_-intronic
ADediting_355618chr12_53530745_-intronic
ADediting_355619chr12_53530746_-intronic
ADediting_355620chr12_53530772_-intronic
ADediting_355621chr12_53530777_-intronic
ADediting_355622chr12_53530779_-intronic
ADediting_355623chr12_53530788_-intronic
ADediting_355624chr12_53530805_-intronic
ADediting_355625chr12_53530812_-intronic
ADediting_355626chr12_53530841_-intronic
ADediting_355627chr12_53531195_-intronic
ADediting_355628chr12_53531322_-intronic
ADediting_355629chr12_53621531_-intronic
ADediting_355630chr12_53621667_-intronic
ADediting_1533171chr12_53508142_-intronic
ADediting_1533172chr12_53508147_-intronic
ADediting_1533173chr12_53508158_-intronic
ADediting_1533174chr12_53508183_-intronic
ADediting_1533175chr12_53508221_-intronic
ADediting_1533176chr12_53508412_-intronic
ADediting_1533177chr12_53509621_-intronic
ADediting_1533178chr12_53509627_-intronic
ADediting_1533179chr12_53509638_-intronic
ADediting_1533180chr12_53510212_-intronic
ADediting_1533181chr12_53517748_-intronic
ADediting_1533182chr12_53517762_-intronic
ADediting_1533183chr12_53517768_-intronic
ADediting_1533184chr12_53518060_-intronic
ADediting_1533185chr12_53518083_-intronic
ADediting_1533186chr12_53518137_-intronic
ADediting_1533187chr12_53518572_-intronic
ADediting_1533188chr12_53518595_-intronic
ADediting_1533189chr12_53518596_-intronic
ADediting_1533190chr12_53518816_-intronic
ADediting_1533191chr12_53519558_-intronic
ADediting_1533192chr12_53519776_-intronic
ADediting_1533193chr12_53519839_-intronic
ADediting_1533194chr12_53522804_-intronic
ADediting_1533195chr12_53529005_-intronic
ADediting_1533196chr12_53529948_-intronic

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_355466chr12_53508096_-SINEAluName=AluSq
ADediting_355467chr12_53508101_-SINEAluName=AluSq
ADediting_355468chr12_53508102_-SINEAluName=AluSq
ADediting_355469chr12_53508109_-SINEAluName=AluSq
ADediting_355470chr12_53508110_-SINEAluName=AluSq
ADediting_355471chr12_53508132_-SINEAluName=AluSq
ADediting_355472chr12_53508140_-SINEAluName=AluSq
ADediting_355473chr12_53508167_-SINEAluName=AluSq
ADediting_355474chr12_53508177_-SINEAluName=AluSq
ADediting_355475chr12_53508186_-SINEAluName=AluSq
ADediting_355476chr12_53508203_-SINEAluName=AluSq
ADediting_355477chr12_53508207_-SINEAluName=AluSq
ADediting_355478chr12_53508213_-SINEAluName=AluSq
ADediting_355479chr12_53508231_-SINEAluName=AluSq
ADediting_355480chr12_53508305_-SINEAluName=AluSq
ADediting_355481chr12_53508317_-SINEAluName=AluSq
ADediting_355482chr12_53508357_-SINEAluName=AluSq
ADediting_355483chr12_53508390_-SINEAluName=AluSq
ADediting_355484chr12_53508394_-SINEAluName=AluSq
ADediting_355485chr12_53508411_-SINEAluName=AluSq
ADediting_355486chr12_53508416_-SINEAluName=AluSq
ADediting_355487chr12_53508422_-SINEAluName=AluSq
ADediting_355488chr12_53508436_-SINEAluName=AluSq
ADediting_355489chr12_53508438_-SINEAluName=AluSq
ADediting_355490chr12_53508448_-SINEAluName=AluSq
ADediting_355491chr12_53508460_-SINEAluName=AluSq
ADediting_355492chr12_53508477_-SINEAluName=AluSq
ADediting_355493chr12_53508478_-SINEAluName=AluSq
ADediting_355494chr12_53508508_-SINEAluName=AluSq
ADediting_355495chr12_53508513_-SINEAluName=AluSq
ADediting_355496chr12_53508534_-SINEAluName=AluSq
ADediting_355497chr12_53508553_-SINEAluName=AluSq
ADediting_355498chr12_53509611_-SINEAluName=AluSz
ADediting_355499chr12_53509617_-SINEAluName=AluSz
ADediting_355500chr12_53509634_-SINEAluName=AluSz
ADediting_355501chr12_53509643_-SINEAluName=AluSz
ADediting_355502chr12_53509644_-SINEAluName=AluSz
ADediting_355503chr12_53509660_-SINEAluName=AluSz
ADediting_355504chr12_53509662_-SINEAluName=AluSz
ADediting_355505chr12_53509685_-SINEAluName=AluSz
ADediting_355506chr12_53509688_-SINEAluName=AluSz
ADediting_355507chr12_53509699_-SINEAluName=AluSz
ADediting_355508chr12_53509724_-SINEAluName=AluSz
ADediting_355509chr12_53509725_-SINEAluName=AluSz
ADediting_355510chr12_53509733_-SINEAluName=AluSz
ADediting_355511chr12_53510142_-SINEAluName=AluSp
ADediting_355512chr12_53510168_-SINEAluName=AluSp
ADediting_355513chr12_53510177_-SINEAluName=AluSp
ADediting_355514chr12_53510204_-SINEAluName=AluSp
ADediting_355515chr12_53510216_-SINEAluName=AluSp
ADediting_355516chr12_53510217_-SINEAluName=AluSp
ADediting_355517chr12_53510218_-SINEAluName=AluSp
ADediting_355518chr12_53510227_-SINEAluName=AluSp
ADediting_355519chr12_53510257_-SINEAluName=AluSp
ADediting_355520chr12_53510258_-SINEAluName=AluSp
ADediting_355521chr12_53510305_-SINEAluName=AluSp
ADediting_355522chr12_53511322_-SINEAluName=AluSq2
ADediting_355523chr12_53511373_-SINEAluName=AluSq2
ADediting_355524chr12_53511386_-SINEAluName=AluSq2
ADediting_355525chr12_53511523_-SINEAluName=AluSq2
ADediting_355526chr12_53517925_-SINEAluName=AluSz6
ADediting_355527chr12_53517940_-SINEAluName=AluSz6
ADediting_355528chr12_53517993_-SINEAluName=AluSz6
ADediting_355529chr12_53518003_-SINEAluName=AluSz6
ADediting_355530chr12_53518009_-SINEAluName=AluSz6
ADediting_355531chr12_53518016_-SINEAluName=AluSz6
ADediting_355532chr12_53518025_-SINEAluName=AluSz6
ADediting_355533chr12_53518061_-SINEAluName=AluSz6
ADediting_355534chr12_53518068_-SINEAluName=AluSz6
ADediting_355535chr12_53518069_-SINEAluName=AluSz6
ADediting_355536chr12_53518073_-SINEAluName=AluSz6
ADediting_355537chr12_53518078_-SINEAluName=AluSz6
ADediting_355538chr12_53518111_-SINEAluName=AluSz6
ADediting_355539chr12_53518138_-SINEAluName=AluSz6
ADediting_355540chr12_53518140_-SINEAluName=AluSz6
ADediting_355541chr12_53518852_-SINEAluName=AluY
ADediting_355542chr12_53518856_-SINEAluName=AluY
ADediting_355543chr12_53518864_-SINEAluName=AluY
ADediting_355544chr12_53518930_-SINEAluName=AluY
ADediting_355545chr12_53518991_-SINEAluName=AluY
ADediting_355546chr12_53519007_-SINEAluName=AluY
ADediting_355547chr12_53519010_-SINEAluName=AluY
ADediting_355548chr12_53519445_-SINEAluName=AluSx
ADediting_355549chr12_53519451_-SINEAluName=AluSx
ADediting_355550chr12_53519457_-SINEAluName=AluSx
ADediting_355551chr12_53519458_-SINEAluName=AluSx
ADediting_355552chr12_53519472_-SINEAluName=AluSx
ADediting_355553chr12_53519505_-SINEAluName=AluSx
ADediting_355554chr12_53519510_-SINEAluName=AluSx
ADediting_355555chr12_53519519_-SINEAluName=AluSx
ADediting_355556chr12_53519522_-SINEAluName=AluSx
ADediting_355557chr12_53519536_-SINEAluName=AluSx
ADediting_355558chr12_53519539_-SINEAluName=AluSx
ADediting_355559chr12_53519580_-SINEAluName=AluSx
ADediting_355560chr12_53519590_-SINEAluName=AluSx
ADediting_355561chr12_53519875_-SINEAluName=AluSc8
ADediting_355562chr12_53519885_-SINEAluName=AluSc8
ADediting_355563chr12_53519907_-SINEAluName=AluSc8
ADediting_355564chr12_53519914_-SINEAluName=AluSc8
ADediting_355565chr12_53519936_-SINEAluName=AluSc8
ADediting_355566chr12_53520013_-SINEAluName=AluSc8
ADediting_355567chr12_53520018_-SINEAluName=AluSc8
ADediting_355568chr12_53520027_-SINEAluName=AluSc8
ADediting_355569chr12_53520320_-SINEAluName=AluSz6
ADediting_355570chr12_53520332_-SINEAluName=AluSz6
ADediting_355571chr12_53520374_-SINEAluName=AluSz6
ADediting_355572chr12_53520385_-SINEAluName=AluSz6
ADediting_355573chr12_53520392_-SINEAluName=AluSz6
ADediting_355574chr12_53520394_-SINEAluName=AluSz6
ADediting_355575chr12_53520411_-SINEAluName=AluSz6
ADediting_355576chr12_53520434_-SINEAluName=AluSz6
ADediting_355577chr12_53520443_-SINEAluName=AluSz6
ADediting_355578chr12_53520454_-SINEAluName=AluSz6
ADediting_355579chr12_53520456_-SINEAluName=AluSz6
ADediting_355580chr12_53520465_-SINEAluName=AluSz6
ADediting_355581chr12_53520466_-SINEAluName=AluSz6
ADediting_355582chr12_53521121_-SINEAluName=AluSq2
ADediting_355583chr12_53521130_-SINEAluName=AluSq2
ADediting_355584chr12_53521131_-SINEAluName=AluSq2
ADediting_355585chr12_53521141_-SINEAluName=AluSq2
ADediting_355586chr12_53521157_-SINEAluName=AluSq2
ADediting_355587chr12_53521172_-SINEAluName=AluSq2
ADediting_355588chr12_53521173_-SINEAluName=AluSq2
ADediting_355589chr12_53521176_-SINEAluName=AluSq2
ADediting_355590chr12_53521238_-SINEAluName=AluSq2
ADediting_355591chr12_53521242_-SINEAluName=AluSq2
ADediting_355592chr12_53522324_-SINEAluName=AluSx1
ADediting_355593chr12_53522434_-SINEAluName=AluSx1
ADediting_355594chr12_53522745_-SINEAluName=AluY
ADediting_355595chr12_53522820_-SINEAluName=AluY
ADediting_355596chr12_53525976_-SINEAluName=AluSp
ADediting_355597chr12_53526082_-SINEAluName=AluSp
ADediting_355598chr12_53526110_-SINEAluName=AluSp
ADediting_355599chr12_53526156_-SINEAluName=AluSp
ADediting_355600chr12_53526729_-SINEAluName=AluSx1
ADediting_355601chr12_53526743_-SINEAluName=AluSx1
ADediting_355602chr12_53526768_-SINEAluName=AluSx1
ADediting_355603chr12_53527601_-SINEAluName=AluSz6
ADediting_355604chr12_53528528_-SINEAluName=AluSx1
ADediting_355605chr12_53528641_-SINEAluName=AluSx1
ADediting_355606chr12_53528663_-SINEAluName=AluSx1
ADediting_355607chr12_53528680_-SINEAluName=AluSx1
ADediting_355608chr12_53528762_-SINEAluName=AluSx1
ADediting_355609chr12_53529564_-SINEAluName=AluSx4
ADediting_355610chr12_53529856_-SINEAluName=AluSg
ADediting_355611chr12_53529864_-SINEAluName=AluSg
ADediting_355612chr12_53529947_-SINEAluName=AluSg
ADediting_355613chr12_53529971_-SINEAluName=AluSg
ADediting_355614chr12_53530014_-SINEAluName=AluSg
ADediting_355615chr12_53530021_-SINEAluName=AluSg
ADediting_355616chr12_53530719_-SINEAluName=AluSx
ADediting_355617chr12_53530740_-SINEAluName=AluSx
ADediting_355618chr12_53530745_-SINEAluName=AluSx
ADediting_355619chr12_53530746_-SINEAluName=AluSx
ADediting_355620chr12_53530772_-SINEAluName=AluSx
ADediting_355621chr12_53530777_-SINEAluName=AluSx
ADediting_355622chr12_53530779_-SINEAluName=AluSx
ADediting_355623chr12_53530788_-SINEAluName=AluSx
ADediting_355624chr12_53530805_-SINEAluName=AluSx
ADediting_355625chr12_53530812_-SINEAluName=AluSx
ADediting_355626chr12_53530841_-SINEAluName=AluSx
ADediting_355627chr12_53531195_-SINEAluName=AluSq
ADediting_355628chr12_53531322_-SINEAluName=AluSq
ADediting_355629chr12_53621531_-SINEAluName=AluSz
ADediting_355630chr12_53621667_-SINEAluName=AluSz
ADediting_1533171chr12_53508142_-SINEAluName=AluSq
ADediting_1533172chr12_53508147_-SINEAluName=AluSq
ADediting_1533173chr12_53508158_-SINEAluName=AluSq
ADediting_1533174chr12_53508183_-SINEAluName=AluSq
ADediting_1533175chr12_53508221_-SINEAluName=AluSq
ADediting_1533176chr12_53508412_-SINEAluName=AluSq
ADediting_1533177chr12_53509621_-SINEAluName=AluSz
ADediting_1533178chr12_53509627_-SINEAluName=AluSz
ADediting_1533179chr12_53509638_-SINEAluName=AluSz
ADediting_1533180chr12_53510212_-SINEAluName=AluSp
ADediting_1533181chr12_53517748_-SINEAluName=AluJb
ADediting_1533182chr12_53517762_-SINEAluName=AluJb
ADediting_1533183chr12_53517768_-SINEAluName=AluJb
ADediting_1533184chr12_53518060_-SINEAluName=AluSz6
ADediting_1533185chr12_53518083_-SINEAluName=AluSz6
ADediting_1533186chr12_53518137_-SINEAluName=AluSz6
ADediting_1533187chr12_53518572_-SINEAluName=AluJo
ADediting_1533188chr12_53518595_-SINEAluName=AluJo
ADediting_1533189chr12_53518596_-SINEAluName=AluJo
ADediting_1533190chr12_53518816_-SINEAluName=AluY
ADediting_1533191chr12_53519558_-SINEAluName=AluSx
ADediting_1533192chr12_53519776_-SINEAluName=AluSc8
ADediting_1533193chr12_53519839_-SINEAluName=AluSc8
ADediting_1533194chr12_53522804_-SINEAluName=AluY
ADediting_1533195chr12_53529005_-SINEAluName=AluJb
ADediting_1533196chr12_53529948_-SINEAluName=AluSg

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RNA A-to-I editing events in the alternative splicing sites for ATF7-NPFF

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ATF7-NPFF

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
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check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
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check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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ADeditome IDChrPositoingSkipped exonENSGENSTs

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Protein coding region RNA A-to-I editings for ATF7-NPFF

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for ATF7-NPFF


check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_527135chr16_24203190_+ENSG00000267281.2ENST00000591834.1ATF7-NPFF-202hsa-miR-1273h-3pchr1253506751535067577mer-m85350675053506771140-11.86

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for ATF7-NPFF

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for ATF7-NPFF

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
AC2.79320837260789e-140.4566207118174355.07606281127470e-120.4185040718774393.52142779990773e-140.455020808947982
CER0.428721900358814-0.0650919183228499.6747807145548e-050.3129063073718040.002539766068167660.244752313479966
TCX0.0147866737397931-0.1986996360837430.251168780203156-0.09427402891190742.49690798205758e-050.33686412922195
FP7.6353404553849e-060.3283914271242073.30362627388831e-070.3714886129340355.59794983395794e-180.588611041226846
IFG0.03565982889901620.4219124631725840.006161717447075580.5322959908787910.001153930895589520.6118248483419
PG0.788071831729111-0.0198423151189020.2808326930790430.07948649232509171.38544797974632e-090.425691233706432
STG0.3394388773324640.1055187273853810.4404059871988680.08530297555950631.62507668213056e-080.569052795900699

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Relation with AD stages for ATF7-NPFF

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.
CER1.2534658525571e-050.406731088810385

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RelatedDrugs for ATF7-NPFF

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for ATF7-NPFF

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource