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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for TRIOBP |
 Gene summary |
| Gene information | Gene symbol | TRIOBP | Gene ID | 11078 |
| Gene name | TRIO and F-actin binding protein | |
| Synonyms | DFNB28|HRIHFB2122|TAP68|TARA|dJ37E16.4 | |
| Cytomap | 22q13.1 | |
| Type of gene | protein-coding | |
| Description | TRIO and F-actin-binding proteinprotein Taratara-like proteintrio-associated repeat on actin | |
| Modification date | 20200313 | |
| UniProtAcc | Q9H2D6, | |
| Context | - 30089789(Protein misassembly and aggregation as potential convergence points for non-genetic causes of chronic mental illness) |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
| TRIOBP | GO:1900026 | positive regulation of substrate adhesion-dependent cell spreading | 11148140 |
Top |
RNA A-to-I events for TRIOBP |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_989271(37698627, +), ADediting_989272(37701983, +), ADediting_989273(37702088, +), ADediting_989274(37702274, +), ADediting_989275(37702298, +), ADediting_989276(37702343, +), ADediting_989277(37702438, +), ADediting_989278(37703076, +), ADediting_989279(37703096, +), ADediting_989280(37703099, +), ADediting_989281(37703135, +), ADediting_989282(37703137, +), ADediting_989283(37703185, +), ADediting_989284(37703196, +), ADediting_989285(37703256, +), ADediting_989286(37703268, +), ADediting_989287(37703695, +), ADediting_989288(37703703, +), ADediting_989289(37703711, +), ADediting_989290(37703779, +), ADediting_989291(37704774, +), ADediting_989292(37704779, +), ADediting_989293(37704784, +), ADediting_989294(37704847, +), ADediting_989295(37704880, +), ADediting_989296(37704885, +), ADediting_989297(37704952, +), ADediting_989298(37704966, +), ADediting_989299(37704988, +), ADediting_989300(37704998, +), ADediting_989301(37705097, +), ADediting_989302(37705103, +), ADediting_989303(37705189, +), ADediting_989304(37705198, +), ADediting_989305(37705300, +), ADediting_989306(37705307, +), ADediting_989307(37705324, +), ADediting_989308(37705325, +), ADediting_989309(37705595, +), ADediting_989310(37705701, +), ADediting_989311(37705705, +), ADediting_989312(37705715, +), ADediting_989313(37705756, +), ADediting_989314(37705811, +), ADediting_989315(37705815, +), ADediting_989316(37705837, +), ADediting_989317(37705838, +), ADediting_989318(37705850, +), ADediting_989319(37705853, +), ADediting_989320(37706549, +), ADediting_989321(37706600, +), ADediting_989322(37707156, +), ADediting_989323(37708431, +), ADediting_989324(37726963, +), ADediting_989325(37726970, +), ADediting_989326(37726971, +), ADediting_989327(37726981, +), ADediting_989328(37727007, +), ADediting_989329(37727109, +), ADediting_989330(37727111, +), ADediting_989331(37727170, +), ADediting_989332(37727177, +), ADediting_989333(37727183, +), ADediting_989334(37727413, +), ADediting_989335(37727414, +), ADediting_989336(37727483, +), ADediting_989337(37727613, +), ADediting_989338(37727633, +), ADediting_989339(37727638, +), ADediting_989340(37727639, +), ADediting_989341(37728244, +), ADediting_989342(37728313, +), ADediting_989343(37728327, +), ADediting_989344(37728340, +), ADediting_989345(37728404, +), ADediting_989346(37729015, +), ADediting_989347(37729016, +), ADediting_989348(37729055, +), ADediting_989349(37729107, +), ADediting_989350(37729192, +), ADediting_989351(37729271, +), ADediting_989352(37729355, +), ADediting_989353(37730686, +), ADediting_989354(37730693, +), ADediting_989355(37730708, +), ADediting_989356(37730709, +), ADediting_989357(37730713, +), ADediting_989358(37730771, +), ADediting_989359(37730785, +), ADediting_989360(37730787, +), ADediting_989361(37730789, +), ADediting_989362(37730800, +), ADediting_989363(37730826, +), ADediting_989364(37730827, +), ADediting_989365(37730832, +), ADediting_989366(37730853, +), ADediting_989367(37730862, +), ADediting_989368(37731189, +), ADediting_989369(37731199, +), ADediting_989370(37731217, +), ADediting_989371(37731231, +), ADediting_989372(37731250, +), ADediting_989373(37731263, +), ADediting_989374(37731277, +), ADediting_989375(37731393, +), ADediting_989376(37731537, +), ADediting_989377(37731574, +), ADediting_989378(37731586, +), ADediting_989379(37731596, +), ADediting_989380(37731640, +), ADediting_989381(37731692, +), ADediting_989382(37731704, +), ADediting_989383(37731731, +), ADediting_989384(37732368, +), ADediting_989385(37732382, +), ADediting_989386(37732390, +), ADediting_989387(37732391, +), ADediting_989388(37732412, +), ADediting_989389(37732417, +), ADediting_989390(37732425, +), ADediting_989391(37732430, +), ADediting_989392(37732431, +), ADediting_989393(37732440, +), ADediting_989394(37732445, +), ADediting_989395(37732460, +), ADediting_989396(37736697, +), ADediting_989397(37736721, +), ADediting_989398(37736889, +), ADediting_989399(37737581, +), ADediting_989400(37754146, +), ADediting_989401(37760779, +), ADediting_989402(37760851, +), ADediting_989403(37760878, +), ADediting_989404(37760887, +), ADediting_989405(37760893, +), ADediting_989406(37761175, +), ADediting_989407(37761348, +), ADediting_989408(37761360, +), ADediting_989409(37761375, +), ADediting_989410(37762095, +), ADediting_989411(37762168, +), ADediting_989412(37762171, +), ADediting_989413(37762180, +), ADediting_989414(37765073, +), ADediting_989415(37765160, +), ADediting_989416(37768627, +), ADediting_989417(37768680, +), ADediting_989418(37768686, +), ADediting_989419(37769798, +), ADediting_989420(37769829, +), ADediting_989421(37769929, +), ADediting_989422(37773243, +), ADediting_989423(37773250, +), ADediting_989424(37773293, +), ADediting_989425(37773305, +), ADediting_989426(37773312, +), ADediting_989427(37773331, +), ADediting_989428(37773380, +), ADediting_989429(37773455, +), ADediting_989430(37773458, +), ADediting_989431(37773472, +), ADediting_989432(37773483, +), ADediting_989433(37773494, +), ADediting_989434(37773496, +), ADediting_989435(37775528, +), ADediting_989436(37775531, +), ADediting_989437(37775552, +), ADediting_989438(37775566, +), ADediting_989439(37775576, +), ADediting_989440(37775600, +), ADediting_989441(37775610, +), ADediting_989442(37775621, +), ADediting_989443(37775630, +), ADediting_989444(37775640, +), ADediting_989445(37775666, +), ADediting_989446(37775667, +), ADediting_989447(37775693, +), ADediting_989448(37775708, +), ADediting_989449(37775712, +), ADediting_989450(37775719, +), ADediting_989451(37775722, +), ADediting_989452(37775736, +), ADediting_1570546(37698252, +), ADediting_1570547(37698299, +), ADediting_1570548(37731825, +), ADediting_1570549(37773358, +), ADediting_1570550(37775602, +), ADediting_1570551(37775702, +), |
Top |
RNA editing positional annotations for TRIOBP using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_989271 | chr22_37698627_+ | intronic |
| ADediting_989272 | chr22_37701983_+ | intronic |
| ADediting_989273 | chr22_37702088_+ | intronic |
| ADediting_989274 | chr22_37702274_+ | intronic |
| ADediting_989275 | chr22_37702298_+ | intronic |
| ADediting_989276 | chr22_37702343_+ | intronic |
| ADediting_989277 | chr22_37702438_+ | intronic |
| ADediting_989278 | chr22_37703076_+ | intronic |
| ADediting_989279 | chr22_37703096_+ | intronic |
| ADediting_989280 | chr22_37703099_+ | intronic |
| ADediting_989281 | chr22_37703135_+ | intronic |
| ADediting_989282 | chr22_37703137_+ | intronic |
| ADediting_989283 | chr22_37703185_+ | intronic |
| ADediting_989284 | chr22_37703196_+ | intronic |
| ADediting_989285 | chr22_37703256_+ | intronic |
| ADediting_989286 | chr22_37703268_+ | intronic |
| ADediting_989287 | chr22_37703695_+ | intronic |
| ADediting_989288 | chr22_37703703_+ | intronic |
| ADediting_989289 | chr22_37703711_+ | intronic |
| ADediting_989290 | chr22_37703779_+ | intronic |
| ADediting_989291 | chr22_37704774_+ | intronic |
| ADediting_989292 | chr22_37704779_+ | intronic |
| ADediting_989293 | chr22_37704784_+ | intronic |
| ADediting_989294 | chr22_37704847_+ | intronic |
| ADediting_989295 | chr22_37704880_+ | intronic |
| ADediting_989296 | chr22_37704885_+ | intronic |
| ADediting_989297 | chr22_37704952_+ | intronic |
| ADediting_989298 | chr22_37704966_+ | intronic |
| ADediting_989299 | chr22_37704988_+ | intronic |
| ADediting_989300 | chr22_37704998_+ | intronic |
| ADediting_989301 | chr22_37705097_+ | intronic |
| ADediting_989302 | chr22_37705103_+ | intronic |
| ADediting_989303 | chr22_37705189_+ | intronic |
| ADediting_989304 | chr22_37705198_+ | intronic |
| ADediting_989305 | chr22_37705300_+ | intronic |
| ADediting_989306 | chr22_37705307_+ | intronic |
| ADediting_989307 | chr22_37705324_+ | intronic |
| ADediting_989308 | chr22_37705325_+ | intronic |
| ADediting_989309 | chr22_37705595_+ | intronic |
| ADediting_989310 | chr22_37705701_+ | intronic |
| ADediting_989311 | chr22_37705705_+ | intronic |
| ADediting_989312 | chr22_37705715_+ | intronic |
| ADediting_989313 | chr22_37705756_+ | intronic |
| ADediting_989314 | chr22_37705811_+ | intronic |
| ADediting_989315 | chr22_37705815_+ | intronic |
| ADediting_989316 | chr22_37705837_+ | intronic |
| ADediting_989317 | chr22_37705838_+ | intronic |
| ADediting_989318 | chr22_37705850_+ | intronic |
| ADediting_989319 | chr22_37705853_+ | intronic |
| ADediting_989320 | chr22_37706549_+ | intronic |
| ADediting_989321 | chr22_37706600_+ | intronic |
| ADediting_989322 | chr22_37707156_+ | intronic |
| ADediting_989323 | chr22_37708431_+ | intronic |
| ADediting_989324 | chr22_37726963_+ | intronic |
| ADediting_989325 | chr22_37726970_+ | intronic |
| ADediting_989326 | chr22_37726971_+ | intronic |
| ADediting_989327 | chr22_37726981_+ | intronic |
| ADediting_989328 | chr22_37727007_+ | intronic |
| ADediting_989329 | chr22_37727109_+ | intronic |
| ADediting_989330 | chr22_37727111_+ | intronic |
| ADediting_989331 | chr22_37727170_+ | intronic |
| ADediting_989332 | chr22_37727177_+ | intronic |
| ADediting_989333 | chr22_37727183_+ | intronic |
| ADediting_989334 | chr22_37727413_+ | intronic |
| ADediting_989335 | chr22_37727414_+ | intronic |
| ADediting_989336 | chr22_37727483_+ | intronic |
| ADediting_989337 | chr22_37727613_+ | intronic |
| ADediting_989338 | chr22_37727633_+ | intronic |
| ADediting_989339 | chr22_37727638_+ | intronic |
| ADediting_989340 | chr22_37727639_+ | intronic |
| ADediting_989341 | chr22_37728244_+ | intronic |
| ADediting_989342 | chr22_37728313_+ | intronic |
| ADediting_989343 | chr22_37728327_+ | intronic |
| ADediting_989344 | chr22_37728340_+ | intronic |
| ADediting_989345 | chr22_37728404_+ | intronic |
| ADediting_989346 | chr22_37729015_+ | intronic |
| ADediting_989347 | chr22_37729016_+ | intronic |
| ADediting_989348 | chr22_37729055_+ | intronic |
| ADediting_989349 | chr22_37729107_+ | intronic |
| ADediting_989350 | chr22_37729192_+ | intronic |
| ADediting_989351 | chr22_37729271_+ | intronic |
| ADediting_989352 | chr22_37729355_+ | intronic |
| ADediting_989353 | chr22_37730686_+ | intronic |
| ADediting_989354 | chr22_37730693_+ | intronic |
| ADediting_989355 | chr22_37730708_+ | intronic |
| ADediting_989356 | chr22_37730709_+ | intronic |
| ADediting_989357 | chr22_37730713_+ | intronic |
| ADediting_989358 | chr22_37730771_+ | intronic |
| ADediting_989359 | chr22_37730785_+ | intronic |
| ADediting_989360 | chr22_37730787_+ | intronic |
| ADediting_989361 | chr22_37730789_+ | intronic |
| ADediting_989362 | chr22_37730800_+ | intronic |
| ADediting_989363 | chr22_37730826_+ | intronic |
| ADediting_989364 | chr22_37730827_+ | intronic |
| ADediting_989365 | chr22_37730832_+ | intronic |
| ADediting_989366 | chr22_37730853_+ | intronic |
| ADediting_989367 | chr22_37730862_+ | intronic |
| ADediting_989368 | chr22_37731189_+ | intronic |
| ADediting_989369 | chr22_37731199_+ | intronic |
| ADediting_989370 | chr22_37731217_+ | intronic |
| ADediting_989371 | chr22_37731231_+ | intronic |
| ADediting_989372 | chr22_37731250_+ | intronic |
| ADediting_989373 | chr22_37731263_+ | intronic |
| ADediting_989374 | chr22_37731277_+ | intronic |
| ADediting_989375 | chr22_37731393_+ | intronic |
| ADediting_989376 | chr22_37731537_+ | intronic |
| ADediting_989377 | chr22_37731574_+ | intronic |
| ADediting_989378 | chr22_37731586_+ | intronic |
| ADediting_989379 | chr22_37731596_+ | intronic |
| ADediting_989380 | chr22_37731640_+ | intronic |
| ADediting_989381 | chr22_37731692_+ | intronic |
| ADediting_989382 | chr22_37731704_+ | intronic |
| ADediting_989383 | chr22_37731731_+ | intronic |
| ADediting_989384 | chr22_37732368_+ | intronic |
| ADediting_989385 | chr22_37732382_+ | intronic |
| ADediting_989386 | chr22_37732390_+ | intronic |
| ADediting_989387 | chr22_37732391_+ | intronic |
| ADediting_989388 | chr22_37732412_+ | intronic |
| ADediting_989389 | chr22_37732417_+ | intronic |
| ADediting_989390 | chr22_37732425_+ | intronic |
| ADediting_989391 | chr22_37732430_+ | intronic |
| ADediting_989392 | chr22_37732431_+ | intronic |
| ADediting_989393 | chr22_37732440_+ | intronic |
| ADediting_989394 | chr22_37732445_+ | intronic |
| ADediting_989395 | chr22_37732460_+ | intronic |
| ADediting_989396 | chr22_37736697_+ | intronic |
| ADediting_989397 | chr22_37736721_+ | intronic |
| ADediting_989398 | chr22_37736889_+ | intronic |
| ADediting_989399 | chr22_37737581_+ | intronic |
| ADediting_989400 | chr22_37754146_+ | intronic |
| ADediting_989401 | chr22_37760779_+ | intronic |
| ADediting_989402 | chr22_37760851_+ | intronic |
| ADediting_989403 | chr22_37760878_+ | intronic |
| ADediting_989404 | chr22_37760887_+ | intronic |
| ADediting_989405 | chr22_37760893_+ | intronic |
| ADediting_989406 | chr22_37761175_+ | intronic |
| ADediting_989407 | chr22_37761348_+ | intronic |
| ADediting_989408 | chr22_37761360_+ | intronic |
| ADediting_989409 | chr22_37761375_+ | intronic |
| ADediting_989410 | chr22_37762095_+ | intronic |
| ADediting_989411 | chr22_37762168_+ | intronic |
| ADediting_989412 | chr22_37762171_+ | intronic |
| ADediting_989413 | chr22_37762180_+ | intronic |
| ADediting_989414 | chr22_37765073_+ | intronic |
| ADediting_989415 | chr22_37765160_+ | intronic |
| ADediting_989416 | chr22_37768627_+ | intronic |
| ADediting_989417 | chr22_37768680_+ | intronic |
| ADediting_989418 | chr22_37768686_+ | intronic |
| ADediting_989419 | chr22_37769798_+ | intronic |
| ADediting_989420 | chr22_37769829_+ | intronic |
| ADediting_989421 | chr22_37769929_+ | intronic |
| ADediting_989422 | chr22_37773243_+ | intronic |
| ADediting_989423 | chr22_37773250_+ | intronic |
| ADediting_989424 | chr22_37773293_+ | intronic |
| ADediting_989425 | chr22_37773305_+ | intronic |
| ADediting_989426 | chr22_37773312_+ | intronic |
| ADediting_989427 | chr22_37773331_+ | intronic |
| ADediting_989428 | chr22_37773380_+ | intronic |
| ADediting_989429 | chr22_37773455_+ | intronic |
| ADediting_989430 | chr22_37773458_+ | intronic |
| ADediting_989431 | chr22_37773472_+ | intronic |
| ADediting_989432 | chr22_37773483_+ | intronic |
| ADediting_989433 | chr22_37773494_+ | intronic |
| ADediting_989434 | chr22_37773496_+ | intronic |
| ADediting_989435 | chr22_37775528_+ | UTR3 |
| ADediting_989436 | chr22_37775531_+ | UTR3 |
| ADediting_989437 | chr22_37775552_+ | UTR3 |
| ADediting_989438 | chr22_37775566_+ | UTR3 |
| ADediting_989439 | chr22_37775576_+ | UTR3 |
| ADediting_989440 | chr22_37775600_+ | UTR3 |
| ADediting_989441 | chr22_37775610_+ | UTR3 |
| ADediting_989442 | chr22_37775621_+ | UTR3 |
| ADediting_989443 | chr22_37775630_+ | UTR3 |
| ADediting_989444 | chr22_37775640_+ | UTR3 |
| ADediting_989445 | chr22_37775666_+ | UTR3 |
| ADediting_989446 | chr22_37775667_+ | UTR3 |
| ADediting_989447 | chr22_37775693_+ | UTR3 |
| ADediting_989448 | chr22_37775708_+ | UTR3 |
| ADediting_989449 | chr22_37775712_+ | UTR3 |
| ADediting_989450 | chr22_37775719_+ | UTR3 |
| ADediting_989451 | chr22_37775722_+ | UTR3 |
| ADediting_989452 | chr22_37775736_+ | UTR3 |
| ADediting_1570546 | chr22_37698252_+ | intronic |
| ADediting_1570547 | chr22_37698299_+ | intronic |
| ADediting_1570548 | chr22_37731825_+ | intronic |
| ADediting_1570549 | chr22_37773358_+ | intronic |
| ADediting_1570550 | chr22_37775602_+ | UTR3 |
| ADediting_1570551 | chr22_37775702_+ | UTR3 |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_989271 | chr22_37698627_+ | SINE | Alu | Name=AluSz |
| ADediting_989272 | chr22_37701983_+ | SINE | Alu | Name=AluSp |
| ADediting_989273 | chr22_37702088_+ | SINE | Alu | Name=AluSp |
| ADediting_989274 | chr22_37702274_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989275 | chr22_37702298_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989276 | chr22_37702343_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989277 | chr22_37702438_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989278 | chr22_37703076_+ | SINE | Alu | Name=AluSg |
| ADediting_989279 | chr22_37703096_+ | SINE | Alu | Name=AluSg |
| ADediting_989280 | chr22_37703099_+ | SINE | Alu | Name=AluSg |
| ADediting_989281 | chr22_37703135_+ | SINE | Alu | Name=AluSg |
| ADediting_989282 | chr22_37703137_+ | SINE | Alu | Name=AluSg |
| ADediting_989283 | chr22_37703185_+ | SINE | Alu | Name=AluSg |
| ADediting_989284 | chr22_37703196_+ | SINE | Alu | Name=AluSg |
| ADediting_989285 | chr22_37703256_+ | SINE | Alu | Name=AluSg |
| ADediting_989286 | chr22_37703268_+ | SINE | Alu | Name=AluSg |
| ADediting_989287 | chr22_37703695_+ | SINE | Alu | Name=AluY |
| ADediting_989288 | chr22_37703703_+ | SINE | Alu | Name=AluY |
| ADediting_989289 | chr22_37703711_+ | SINE | Alu | Name=AluY |
| ADediting_989290 | chr22_37703779_+ | SINE | Alu | Name=AluY |
| ADediting_989291 | chr22_37704774_+ | SINE | Alu | Name=AluJo |
| ADediting_989292 | chr22_37704779_+ | SINE | Alu | Name=AluJo |
| ADediting_989293 | chr22_37704784_+ | SINE | Alu | Name=AluJo |
| ADediting_989294 | chr22_37704847_+ | SINE | Alu | Name=AluJo |
| ADediting_989295 | chr22_37704880_+ | SINE | Alu | Name=AluJo |
| ADediting_989296 | chr22_37704885_+ | SINE | Alu | Name=AluJo |
| ADediting_989297 | chr22_37704952_+ | SINE | Alu | Name=AluJo |
| ADediting_989298 | chr22_37704966_+ | SINE | Alu | Name=AluJo |
| ADediting_989299 | chr22_37704988_+ | SINE | Alu | Name=AluJo |
| ADediting_989300 | chr22_37704998_+ | SINE | Alu | Name=AluJo |
| ADediting_989301 | chr22_37705097_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989302 | chr22_37705103_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989303 | chr22_37705189_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989304 | chr22_37705198_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989305 | chr22_37705300_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989306 | chr22_37705307_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989307 | chr22_37705324_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989308 | chr22_37705325_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989309 | chr22_37705595_+ | SINE | Alu | Name=AluSz |
| ADediting_989310 | chr22_37705701_+ | SINE | Alu | Name=AluSz |
| ADediting_989311 | chr22_37705705_+ | SINE | Alu | Name=AluSz |
| ADediting_989312 | chr22_37705715_+ | SINE | Alu | Name=AluSz |
| ADediting_989313 | chr22_37705756_+ | SINE | Alu | Name=AluSz |
| ADediting_989314 | chr22_37705811_+ | SINE | Alu | Name=AluSz |
| ADediting_989315 | chr22_37705815_+ | SINE | Alu | Name=AluSz |
| ADediting_989316 | chr22_37705837_+ | SINE | Alu | Name=AluSz |
| ADediting_989317 | chr22_37705838_+ | SINE | Alu | Name=AluSz |
| ADediting_989318 | chr22_37705850_+ | SINE | Alu | Name=AluSz |
| ADediting_989319 | chr22_37705853_+ | SINE | Alu | Name=AluSz |
| ADediting_989320 | chr22_37706549_+ | SINE | Alu | Name=AluJo |
| ADediting_989321 | chr22_37706600_+ | SINE | Alu | Name=AluJo |
| ADediting_989322 | chr22_37707156_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989323 | chr22_37708431_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989324 | chr22_37726963_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989325 | chr22_37726970_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989326 | chr22_37726971_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989327 | chr22_37726981_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989328 | chr22_37727007_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989329 | chr22_37727109_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989330 | chr22_37727111_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989331 | chr22_37727170_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989332 | chr22_37727177_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989333 | chr22_37727183_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989334 | chr22_37727413_+ | SINE | Alu | Name=AluY |
| ADediting_989335 | chr22_37727414_+ | SINE | Alu | Name=AluY |
| ADediting_989336 | chr22_37727483_+ | SINE | Alu | Name=AluY |
| ADediting_989337 | chr22_37727613_+ | SINE | Alu | Name=AluY |
| ADediting_989338 | chr22_37727633_+ | SINE | Alu | Name=AluY |
| ADediting_989339 | chr22_37727638_+ | SINE | Alu | Name=AluY |
| ADediting_989340 | chr22_37727639_+ | SINE | Alu | Name=AluY |
| ADediting_989341 | chr22_37728244_+ | SINE | Alu | Name=AluSx3 |
| ADediting_989342 | chr22_37728313_+ | SINE | Alu | Name=AluSx3 |
| ADediting_989343 | chr22_37728327_+ | SINE | Alu | Name=AluSx3 |
| ADediting_989344 | chr22_37728340_+ | SINE | Alu | Name=AluSx3 |
| ADediting_989345 | chr22_37728404_+ | SINE | Alu | Name=AluSx3 |
| ADediting_989346 | chr22_37729015_+ | SINE | Alu | Name=AluSx |
| ADediting_989347 | chr22_37729016_+ | SINE | Alu | Name=AluSx |
| ADediting_989348 | chr22_37729055_+ | SINE | Alu | Name=AluSx |
| ADediting_989349 | chr22_37729107_+ | SINE | Alu | Name=AluSx |
| ADediting_989350 | chr22_37729192_+ | SINE | Alu | Name=AluSx |
| ADediting_989351 | chr22_37729271_+ | SINE | Alu | Name=AluJr |
| ADediting_989352 | chr22_37729355_+ | SINE | Alu | Name=AluJr |
| ADediting_989353 | chr22_37730686_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989354 | chr22_37730693_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989355 | chr22_37730708_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989356 | chr22_37730709_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989357 | chr22_37730713_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989358 | chr22_37730771_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989359 | chr22_37730785_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989360 | chr22_37730787_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989361 | chr22_37730789_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989362 | chr22_37730800_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989363 | chr22_37730826_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989364 | chr22_37730827_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989365 | chr22_37730832_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989366 | chr22_37730853_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989367 | chr22_37730862_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989368 | chr22_37731189_+ | SINE | Alu | Name=AluJb |
| ADediting_989369 | chr22_37731199_+ | SINE | Alu | Name=AluJb |
| ADediting_989370 | chr22_37731217_+ | SINE | Alu | Name=AluJb |
| ADediting_989371 | chr22_37731231_+ | SINE | Alu | Name=AluJb |
| ADediting_989372 | chr22_37731250_+ | SINE | Alu | Name=AluJb |
| ADediting_989373 | chr22_37731263_+ | SINE | Alu | Name=AluJb |
| ADediting_989374 | chr22_37731277_+ | SINE | Alu | Name=AluJb |
| ADediting_989375 | chr22_37731393_+ | SINE | Alu | Name=AluJb |
| ADediting_989376 | chr22_37731537_+ | SINE | Alu | Name=AluSz |
| ADediting_989377 | chr22_37731574_+ | SINE | Alu | Name=AluSz |
| ADediting_989378 | chr22_37731586_+ | SINE | Alu | Name=AluSz |
| ADediting_989379 | chr22_37731596_+ | SINE | Alu | Name=AluSz |
| ADediting_989380 | chr22_37731640_+ | SINE | Alu | Name=AluSz |
| ADediting_989381 | chr22_37731692_+ | SINE | Alu | Name=AluSz |
| ADediting_989382 | chr22_37731704_+ | SINE | Alu | Name=AluSz |
| ADediting_989383 | chr22_37731731_+ | SINE | Alu | Name=AluSz |
| ADediting_989384 | chr22_37732368_+ | SINE | Alu | Name=AluSx |
| ADediting_989385 | chr22_37732382_+ | SINE | Alu | Name=AluSx |
| ADediting_989386 | chr22_37732390_+ | SINE | Alu | Name=AluSx |
| ADediting_989387 | chr22_37732391_+ | SINE | Alu | Name=AluSx |
| ADediting_989388 | chr22_37732412_+ | SINE | Alu | Name=AluSx |
| ADediting_989389 | chr22_37732417_+ | SINE | Alu | Name=AluSx |
| ADediting_989390 | chr22_37732425_+ | SINE | Alu | Name=AluSx |
| ADediting_989391 | chr22_37732430_+ | SINE | Alu | Name=AluSx |
| ADediting_989392 | chr22_37732431_+ | SINE | Alu | Name=AluSx |
| ADediting_989393 | chr22_37732440_+ | SINE | Alu | Name=AluSx |
| ADediting_989394 | chr22_37732445_+ | SINE | Alu | Name=AluSx |
| ADediting_989395 | chr22_37732460_+ | SINE | Alu | Name=AluSx |
| ADediting_989396 | chr22_37736697_+ | SINE | Alu | Name=AluSp |
| ADediting_989397 | chr22_37736721_+ | SINE | Alu | Name=AluSp |
| ADediting_989398 | chr22_37736889_+ | SINE | Alu | Name=AluSp |
| ADediting_989399 | chr22_37737581_+ | SINE | Alu | Name=AluY |
| ADediting_989400 | chr22_37754146_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989401 | chr22_37760779_+ | SINE | Alu | Name=AluSc |
| ADediting_989402 | chr22_37760851_+ | SINE | Alu | Name=AluSc |
| ADediting_989403 | chr22_37760878_+ | SINE | Alu | Name=AluSc |
| ADediting_989404 | chr22_37760887_+ | SINE | Alu | Name=AluSc |
| ADediting_989405 | chr22_37760893_+ | SINE | Alu | Name=AluSc |
| ADediting_989406 | chr22_37761175_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989407 | chr22_37761348_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989408 | chr22_37761360_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989409 | chr22_37761375_+ | SINE | Alu | Name=AluSx1 |
| ADediting_989410 | chr22_37762095_+ | SINE | Alu | Name=AluJr |
| ADediting_989411 | chr22_37762168_+ | SINE | Alu | Name=AluJr |
| ADediting_989412 | chr22_37762171_+ | SINE | Alu | Name=AluJr |
| ADediting_989413 | chr22_37762180_+ | SINE | Alu | Name=AluJr |
| ADediting_989414 | chr22_37765073_+ | SINE | Alu | Name=AluSx4 |
| ADediting_989415 | chr22_37765160_+ | SINE | Alu | Name=AluSx4 |
| ADediting_989416 | chr22_37768627_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989417 | chr22_37768680_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989418 | chr22_37768686_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989419 | chr22_37769798_+ | SINE | Alu | Name=AluSz |
| ADediting_989420 | chr22_37769829_+ | SINE | Alu | Name=AluSz |
| ADediting_989421 | chr22_37769929_+ | SINE | Alu | Name=AluSz |
| ADediting_989422 | chr22_37773243_+ | SINE | Alu | Name=AluJb |
| ADediting_989423 | chr22_37773250_+ | SINE | Alu | Name=AluJb |
| ADediting_989424 | chr22_37773293_+ | SINE | Alu | Name=AluJb |
| ADediting_989425 | chr22_37773305_+ | SINE | Alu | Name=AluJb |
| ADediting_989426 | chr22_37773312_+ | SINE | Alu | Name=AluJb |
| ADediting_989427 | chr22_37773331_+ | SINE | Alu | Name=AluJb |
| ADediting_989428 | chr22_37773380_+ | SINE | Alu | Name=AluJb |
| ADediting_989429 | chr22_37773455_+ | SINE | Alu | Name=AluJb |
| ADediting_989430 | chr22_37773458_+ | SINE | Alu | Name=AluJb |
| ADediting_989431 | chr22_37773472_+ | SINE | Alu | Name=AluJb |
| ADediting_989432 | chr22_37773483_+ | SINE | Alu | Name=AluJb |
| ADediting_989433 | chr22_37773494_+ | SINE | Alu | Name=AluJb |
| ADediting_989434 | chr22_37773496_+ | SINE | Alu | Name=AluJb |
| ADediting_989435 | chr22_37775528_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989436 | chr22_37775531_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989437 | chr22_37775552_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989438 | chr22_37775566_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989439 | chr22_37775576_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989440 | chr22_37775600_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989441 | chr22_37775610_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989442 | chr22_37775621_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989443 | chr22_37775630_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989444 | chr22_37775640_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989445 | chr22_37775666_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989446 | chr22_37775667_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989447 | chr22_37775693_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989448 | chr22_37775708_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989449 | chr22_37775712_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989450 | chr22_37775719_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989451 | chr22_37775722_+ | SINE | Alu | Name=AluSq2 |
| ADediting_989452 | chr22_37775736_+ | SINE | Alu | Name=AluSq2 |
| ADediting_1570546 | chr22_37698252_+ | SINE | Alu | Name=AluJo |
| ADediting_1570547 | chr22_37698299_+ | SINE | Alu | Name=AluJo |
| ADediting_1570548 | chr22_37731825_+ | SINE | Alu | Name=AluJo |
| ADediting_1570549 | chr22_37773358_+ | SINE | Alu | Name=AluJb |
| ADediting_1570550 | chr22_37775602_+ | SINE | Alu | Name=AluSq2 |
| ADediting_1570551 | chr22_37775702_+ | SINE | Alu | Name=AluSq2 |
Top |
RNA A-to-I editing events in the alternative splicing sites for TRIOBP |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for TRIOBP |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
Top |
Protein coding region RNA A-to-I editings for TRIOBP |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
Top |
The effects of the RNA editing to the miRNA binding sites for TRIOBP |
| RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1570550 | chr22_37775602_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-1306-3p | chr22 | 37775595 | 37775601 | 7mer-m8 | 37775585 | 37775602 | 152 | -23.71 |
| ADediting_989435 | chr22_37775528_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-4742-5p | chr22 | 37775521 | 37775527 | 7mer-m8 | 37775507 | 37775528 | 147 | -15.96 |
| ADediting_989440 | chr22_37775600_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-3190-5p | chr22 | 37775593 | 37775599 | 7mer-m8 | 37775581 | 37775600 | 154 | -19.64 |
| ADediting_989441 | chr22_37775610_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-412-3p | chr22 | 37775603 | 37775609 | 7mer-m8 | 37775588 | 37775610 | 153 | -17.3 |
| ADediting_989441 | chr22_37775610_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-4508 | chr22 | 37775608 | 37775614 | 7mer-m8 | 37775599 | 37775615 | 140 | -21.85 |
| ADediting_989441 | chr22_37775610_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-6754-3p | chr22 | 37775603 | 37775609 | 7mer-m8 | 37775590 | 37775610 | 144 | -15.76 |
| ADediting_989442 | chr22_37775621_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-374b-3p | chr22 | 37775618 | 37775625 | 8mer-1a | 37775603 | 37775625 | 147 | -12.57 |
| ADediting_989443 | chr22_37775630_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-153-5p | chr22 | 37775623 | 37775629 | 7mer-m8 | 37775608 | 37775630 | 144 | -8.17 |
| ADediting_989443 | chr22_37775630_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-3680-3p | chr22 | 37775627 | 37775634 | 8mer-1a | 37775612 | 37775634 | 140 | -14.25 |
| ADediting_989444 | chr22_37775640_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-3190-5p | chr22 | 37775638 | 37775645 | 8mer-1a | 37775626 | 37775645 | 143 | -16.58 |
| ADediting_989444 | chr22_37775640_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-548s | chr22 | 37775637 | 37775643 | 7mer-m8 | 37775622 | 37775644 | 140 | -11.19 |
| ADediting_989445 | chr22_37775666_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-513a-5p | chr22 | 37775660 | 37775666 | 7mer-m8 | 37775650 | 37775667 | 140 | -14.63 |
| ADediting_989445 | chr22_37775666_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-638 | chr22 | 37775665 | 37775671 | 7mer-1a | 37775647 | 37775671 | 159 | -33.39 |
| ADediting_989446 | chr22_37775667_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-8052 | chr22 | 37775665 | 37775671 | 7mer-1a | 37775651 | 37775671 | 145 | -21.24 |
| ADediting_989448 | chr22_37775708_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-10400-3p | chr22 | 37775705 | 37775711 | 7mer-m8 | 37775691 | 37775712 | 140 | -21.46 |
| ADediting_989448 | chr22_37775708_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-4437 | chr22 | 37775704 | 37775711 | 8mer-1a | 37775691 | 37775711 | 146 | -19.6 |
| ADediting_989448 | chr22_37775708_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-4674 | chr22 | 37775705 | 37775711 | 7mer-m8 | 37775692 | 37775712 | 147 | -22.8 |
| ADediting_989450 | chr22_37775719_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-1281 | chr22 | 37775712 | 37775718 | 7mer-m8 | 37775703 | 37775719 | 145 | -17.85 |
| ADediting_989450 | chr22_37775719_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-718 | chr22 | 37775715 | 37775721 | 7mer-m8 | 37775703 | 37775722 | 150 | -28.2 |
| ADediting_989452 | chr22_37775736_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-4638-5p | chr22 | 37775731 | 37775738 | 8mer-1a | 37775719 | 37775738 | 146 | -20.11 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1570550 | chr22_37775602_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-4716-5p | chr22 | 37775598 | 37775604 | 7mer-m8 | 37775584 | 37775605 | 140 | -11.3 |
| ADediting_1570550 | chr22_37775602_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-4781-3p | chr22 | 37775596 | 37775602 | 7mer-m8 | 37775585 | 37775603 | 144 | -13.86 |
| ADediting_1570551 | chr22_37775702_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-8062 | chr22 | 37775697 | 37775703 | 7mer-m8 | 37775684 | 37775704 | 141 | -10.43 |
| ADediting_989437 | chr22_37775552_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-6878-3p | chr22 | 37775545 | 37775552 | 8mer-1a | 37775532 | 37775552 | 142 | -17.1 |
| ADediting_989438 | chr22_37775566_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-1245a | chr22 | 37775561 | 37775567 | 7mer-m8 | 37775548 | 37775568 | 149 | -19.43 |
| ADediting_989440 | chr22_37775600_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-4716-5p | chr22 | 37775598 | 37775604 | 7mer-m8 | 37775584 | 37775605 | 140 | -11.3 |
| ADediting_989440 | chr22_37775600_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-4781-3p | chr22 | 37775596 | 37775602 | 7mer-m8 | 37775585 | 37775603 | 144 | -13.86 |
| ADediting_989441 | chr22_37775610_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-193b-5p | chr22 | 37775607 | 37775613 | 7mer-m8 | 37775593 | 37775614 | 142 | -20.42 |
| ADediting_989442 | chr22_37775621_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-6832-5p | chr22 | 37775615 | 37775621 | 7mer-m8 | 37775600 | 37775622 | 142 | -16.66 |
| ADediting_989444 | chr22_37775640_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-4735-5p | chr22 | 37775634 | 37775640 | 7mer-m8 | 37775620 | 37775641 | 140 | -4.28 |
| ADediting_989444 | chr22_37775640_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-4794 | chr22 | 37775638 | 37775645 | 8mer-1a | 37775624 | 37775645 | 140 | -12.64 |
| ADediting_989444 | chr22_37775640_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-664a-5p | chr22 | 37775638 | 37775645 | 8mer-1a | 37775622 | 37775645 | 141 | -13.49 |
| ADediting_989445 | chr22_37775666_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-10399-5p | chr22 | 37775661 | 37775667 | 7mer-m8 | 37775648 | 37775668 | 142 | -8.75 |
| ADediting_989445 | chr22_37775666_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-6504-3p | chr22 | 37775661 | 37775667 | 7mer-m8 | 37775649 | 37775668 | 140 | -8.41 |
| ADediting_989446 | chr22_37775667_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-10399-5p | chr22 | 37775661 | 37775667 | 7mer-m8 | 37775648 | 37775668 | 142 | -8.75 |
| ADediting_989446 | chr22_37775667_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-5089-5p | chr22 | 37775665 | 37775671 | 7mer-m8 | 37775654 | 37775672 | 146 | -13.57 |
| ADediting_989446 | chr22_37775667_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-6504-3p | chr22 | 37775661 | 37775667 | 7mer-m8 | 37775649 | 37775668 | 140 | -8.41 |
| ADediting_989447 | chr22_37775693_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-1976 | chr22 | 37775690 | 37775697 | 8mer-1a | 37775677 | 37775697 | 153 | -25.04 |
| ADediting_989447 | chr22_37775693_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-6747-3p | chr22 | 37775688 | 37775695 | 8mer-1a | 37775673 | 37775695 | 149 | -23.42 |
| ADediting_989449 | chr22_37775712_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-1343-3p | chr22 | 37775708 | 37775714 | 7mer-m8 | 37775692 | 37775715 | 143 | -22.21 |
| ADediting_989449 | chr22_37775712_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-6742-3p | chr22 | 37775707 | 37775714 | 8mer-1a | 37775695 | 37775714 | 145 | -14.93 |
| ADediting_989449 | chr22_37775712_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-6783-3p | chr22 | 37775708 | 37775714 | 7mer-m8 | 37775695 | 37775715 | 146 | -16.82 |
| ADediting_989450 | chr22_37775719_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-6738-3p | chr22 | 37775715 | 37775721 | 7mer-m8 | 37775699 | 37775722 | 147 | -18.46 |
| ADediting_989450 | chr22_37775719_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-6836-3p | chr22 | 37775712 | 37775718 | 7mer-m8 | 37775699 | 37775719 | 140 | -15.22 |
| ADediting_989451 | chr22_37775722_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-6738-3p | chr22 | 37775715 | 37775721 | 7mer-m8 | 37775699 | 37775722 | 147 | -18.46 |
| ADediting_989451 | chr22_37775722_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-891b | chr22 | 37775720 | 37775727 | 8mer-1a | 37775708 | 37775727 | 148 | -16.54 |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_496066 | chr15_66496985_- | ENSG00000100106.22 | ENST00000407319.7 | TRIOBP-204 | hsa-miR-4512 | chr22 | 37759674 | 37759681 | 8mer-1a | 37759660 | 37759681 | 140 | -22.22 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000100106.22 | ENST00000407319.7 | TRIOBP-204 | hsa-miR-4775 | chr22 | 37760321 | 37760327 | 7mer-1a | 37760306 | 37760327 | 144 | -12.24 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337758 | chr7_5495892_- | ENSG00000100106.22 | ENST00000407319.7 | TRIOBP-204 | hsa-miR-589-5p | chr22 | 37759752 | 37759759 | 8mer-1a | 37759737 | 37759759 | 149 | -20.47 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000100106.22 | ENST00000407319.7 | TRIOBP-204 | hsa-miR-381-3p | chr22 | 37760009 | 37760015 | 7mer-m8 | 37759995 | 37760016 | 150 | -11.26 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000100106.22 | ENST00000407319.7 | TRIOBP-204 | hsa-miR-381-3p | chr22 | 37760009 | 37760015 | 7mer-m8 | 37759995 | 37760016 | 150 | -11.26 |
| ADediting_527135 | chr16_24203190_+ | ENSG00000100106.22 | ENST00000407319.7 | TRIOBP-204 | hsa-miR-1273h-3p | chr22 | 37759691 | 37759697 | 7mer-m8 | 37759677 | 37759698 | 141 | -19.9 |
| ADediting_527135 | chr16_24203190_+ | ENSG00000100106.22 | ENST00000644935.1 | TRIOBP-211 | hsa-miR-1273h-3p | chr22 | 37774759 | 37774765 | 7mer-m8 | 37774745 | 37774766 | 142 | -13.05 |
| Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for TRIOBP |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000644935.1 | protein_coding |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_989435 | ENST00000644935.1 | chr22_37775528_+ | 9057 | -3941.20 | -3941.20 | -3961.50 |
| ADediting_989436 | ENST00000644935.1 | chr22_37775531_+ | 9060 | -3941.20 | -3941.20 | -3961.50 |
| ADediting_989437 | ENST00000644935.1 | chr22_37775552_+ | 9081 | -3944.70 | -3941.20 | -3961.50 |
| ADediting_989438 | ENST00000644935.1 | chr22_37775566_+ | 9095 | -3940.80 | -3941.20 | -3961.50 |
| ADediting_989439 | ENST00000644935.1 | chr22_37775576_+ | 9105 | -3940.50 | -3941.20 | -3961.50 |
| ADediting_989440 | ENST00000644935.1 | chr22_37775600_+ | 9129 | -3941.60 | -3941.20 | -3961.50 |
| ADediting_1570550 | ENST00000644935.1 | chr22_37775602_+ | 9131 | -3941.20 | -3941.20 | -3961.50 |
| ADediting_989441 | ENST00000644935.1 | chr22_37775610_+ | 9139 | -3940.80 | -3941.20 | -3961.50 |
| ADediting_989442 | ENST00000644935.1 | chr22_37775621_+ | 9150 | -3943.70 | -3941.20 | -3961.50 |
| ADediting_989443 | ENST00000644935.1 | chr22_37775630_+ | 9159 | -3941.20 | -3941.20 | -3961.50 |
| ADediting_989444 | ENST00000644935.1 | chr22_37775640_+ | 9169 | -3944.10 | -3941.20 | -3961.50 |
| ADediting_989445 | ENST00000644935.1 | chr22_37775666_+ | 9195 | -3945.50 | -3941.20 | -3961.50 |
| ADediting_989446 | ENST00000644935.1 | chr22_37775667_+ | 9196 | -3944.50 | -3941.20 | -3961.50 |
| ADediting_989447 | ENST00000644935.1 | chr22_37775693_+ | 9222 | -3940.50 | -3941.20 | -3961.50 |
| ADediting_1570551 | ENST00000644935.1 | chr22_37775702_+ | 9231 | -3941.20 | -3941.20 | -3961.50 |
| ADediting_989448 | ENST00000644935.1 | chr22_37775708_+ | 9237 | -3941.20 | -3941.20 | -3961.50 |
| ADediting_989449 | ENST00000644935.1 | chr22_37775712_+ | 9241 | -3941.90 | -3941.20 | -3961.50 |
| ADediting_989450 | ENST00000644935.1 | chr22_37775719_+ | 9248 | -3940.50 | -3941.20 | -3961.50 |
| ADediting_989451 | ENST00000644935.1 | chr22_37775722_+ | 9251 | -3943.80 | -3941.20 | -3961.50 |
| ADediting_989452 | ENST00000644935.1 | chr22_37775736_+ | 9265 | -3943.40 | -3941.20 | -3961.50 |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for TRIOBP |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | ADediting_989385 | chr22_37732382_+ | 0.232881026039324 | 0.0679523250052725 | 0.338922012866722 | -0.0544938151689185 | 2.89646181104448e-15 | 0.428352889674035 |
| DLPFC | ADediting_989387 | chr22_37732391_+ | 0.0436635134745015 | 0.114660386675978 | 0.941488291848428 | 0.00418569696961515 | 8.14222071851016e-16 | 0.436000971735529 |
| DLPFC | ADediting_989388 | chr22_37732412_+ | 0.0766721163347649 | 0.10069908645285 | 0.786840689277975 | 0.0154199426150358 | 2.69563176327841e-19 | 0.480304311980145 |
| DLPFC | ADediting_989402 | chr22_37760851_+ | 0.129580135768185 | -0.0862773033491599 | 0.0119874523078217 | -0.142547578735487 | 1.36478600847083e-08 | 0.315476880104995 |
| DLPFC | ADediting_989404 | chr22_37760887_+ | 0.215669983533459 | -0.0705180361451166 | 0.0160019746386169 | -0.136723903989495 | 9.46610103329488e-10 | 0.338541695255607 |
| DLPFC | ADediting_989405 | chr22_37760893_+ | 0.212950465644752 | -0.0709366896543862 | 0.0370786893460375 | -0.118475426020654 | 2.19683102813668e-08 | 0.311149947095583 |
| DLPFC | ADediting_989435 | chr22_37775528_+ | 0.0824376985897253 | 0.0987963795360335 | 0.811680588130008 | 0.0135864361221966 | 3.60044817734546e-10 | 0.34644666830615 |
| DLPFC | ADediting_989447 | chr22_37775693_+ | 0.31557951754041 | 0.0571840553356441 | 0.503160769098304 | -0.0381667798498381 | 1.47929714187272e-11 | 0.371093307648607 |
| DLPFC | ADediting_989451 | chr22_37775722_+ | 0.343896441004427 | 0.0539360222168853 | 0.211411595235593 | -0.0711752931951567 | 3.04494704207799e-20 | 0.491325243266951 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 1.7780110678315e-05 | 0.241086921606162 | 0.101286071543822 | 0.0932429111662639 | 1.58194665886528e-65 | 0.7832048113528 |
| AC | 1.16990378202507e-17 | 0.505993303974814 | 2.29124396518575e-09 | 0.366537444083137 | 5.33339869639911e-32 | 0.654833034018873 |
| PCC | 0.0858367596479985 | 0.124627235379986 | 0.713945172987073 | 0.026694052165878 | 6.64267746841017e-11 | 0.449843098801619 |
| CER | 0.00451568361032127 | 0.230654718524218 | 0.123877508676265 | 0.126187210533755 | 1.79368977634222e-13 | 0.554587601066889 |
| TCX | 0.0634090252029274 | 0.151957057475953 | 0.00064515072019152 | -0.275473727542039 | 1.36604825601785e-17 | 0.624425587042022 |
| FP | 0.00330050363061381 | 0.219093997486595 | 0.914915314810513 | -0.00806474130334899 | 4.16133826770535e-15 | 0.544133326835292 |
| IFG | 0.283041332822751 | 0.223411859330456 | 0.2081607830064 | 0.260694199308273 | 0.000267078541221013 | 0.667504762122293 |
| PG | 0.000807378900844418 | -0.243583863708489 | 4.25491143761092e-05 | -0.295393123702925 | 6.67520408881619e-12 | 0.475873211073239 |
| STG | 0.993059850290182 | 0.000963498987417271 | 0.0531535764316173 | -0.21175452765121 | 8.85550396399456e-07 | 0.506481271286521 |
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Relation with AD stages for TRIOBP |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| TCX | 2.28712681533999e-09 | 0.540162851402262 |
| PG | 3.72451324388832e-06 | 0.331787076804768 |
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RelatedDrugs for TRIOBP |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TRIOBP |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
| TRIOBP | C1853276 | Deafness, Autosomal Recessive 28 | 8 | CLINGEN;CTD_human;UNIPROT |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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