|
||||||
|
 | |
| |
| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
| |
| |
| The effects of the RNA editing to the stability of the RNA structures |
| |
| |
| |
|
Gene summary for RAB40B |
 Gene summary |
| Gene information | Gene symbol | RAB40B | Gene ID | 10966 |
| Gene name | RAB40B, member RAS oncogene family | |
| Synonyms | RAR|SEC4L | |
| Cytomap | 17q25.3 | |
| Type of gene | protein-coding | |
| Description | ras-related protein Rab-40BGTP-binding protein homologous to Saccharomyces cerevisiae SEC4SOCS box-containing protein RARprotein Rar | |
| Modification date | 20200313 | |
| UniProtAcc | Q12829, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for RAB40B |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_675998(82656025, -), ADediting_675999(82656034, -), ADediting_676000(82656081, -), ADediting_676001(82656086, -), ADediting_676002(82656087, -), ADediting_676003(82656100, -), ADediting_676004(82656105, -), ADediting_676005(82656116, -), ADediting_676006(82656117, -), ADediting_676007(82656118, -), ADediting_676008(82656119, -), ADediting_676009(82656120, -), ADediting_676010(82656122, -), ADediting_676011(82656127, -), ADediting_676012(82656131, -), ADediting_676013(82656142, -), ADediting_676014(82656147, -), ADediting_676015(82656152, -), ADediting_676016(82656165, -), ADediting_676017(82656167, -), ADediting_676018(82656176, -), ADediting_676019(82656205, -), ADediting_676020(82656218, -), ADediting_676021(82656219, -), ADediting_676022(82656225, -), ADediting_676023(82656227, -), ADediting_676024(82656770, -), ADediting_676025(82656771, -), ADediting_676026(82656784, -), ADediting_676027(82656848, -), ADediting_676028(82656879, -), ADediting_676029(82656892, -), ADediting_676030(82656902, -), ADediting_676031(82656951, -), ADediting_676032(82656954, -), ADediting_676033(82656975, -), ADediting_676034(82656978, -), ADediting_676035(82657009, -), ADediting_676036(82665350, -), ADediting_676037(82665423, -), ADediting_676038(82665447, -), ADediting_676039(82665453, -), ADediting_676040(82665496, -), ADediting_676041(82665622, -), ADediting_676042(82665649, -), ADediting_676043(82665650, -), ADediting_676044(82665682, -), ADediting_676045(82665751, -), ADediting_676046(82665780, -), ADediting_676047(82665820, -), ADediting_676048(82665968, -), ADediting_676049(82665971, -), ADediting_676050(82666011, -), ADediting_676051(82666191, -), ADediting_676052(82666347, -), ADediting_676053(82666534, -), ADediting_676054(82669103, -), ADediting_676055(82669219, -), ADediting_676056(82669489, -), ADediting_676057(82669558, -), ADediting_676058(82669639, -), ADediting_676059(82670281, -), ADediting_676060(82670290, -), ADediting_676061(82670323, -), ADediting_676062(82670349, -), ADediting_676063(82670358, -), ADediting_676064(82670362, -), ADediting_676065(82670363, -), ADediting_676066(82670381, -), ADediting_676067(82670388, -), ADediting_676068(82670457, -), ADediting_676069(82670460, -), ADediting_676070(82670659, -), ADediting_676071(82670672, -), ADediting_676072(82670762, -), ADediting_676073(82670805, -), ADediting_676074(82670806, -), ADediting_676075(82670812, -), ADediting_676076(82672941, -), ADediting_676077(82673024, -), ADediting_676078(82673190, -), ADediting_676079(82674300, -), ADediting_676080(82676690, -), ADediting_676081(82679150, -), ADediting_676082(82679515, -), ADediting_676083(82679556, -), ADediting_676084(82680056, -), ADediting_676085(82680233, -), ADediting_676086(82680411, -), ADediting_676087(82680827, -), ADediting_676088(82680918, -), ADediting_676089(82680947, -), ADediting_676090(82680982, -), ADediting_676091(82682955, -), ADediting_676092(82682994, -), ADediting_676093(82683060, -), ADediting_676094(82683682, -), ADediting_676095(82684857, -), ADediting_676096(82684863, -), ADediting_676097(82684897, -), ADediting_676098(82684948, -), ADediting_676099(82685031, -), ADediting_676100(82685069, -), ADediting_676101(82685074, -), ADediting_676102(82685075, -), ADediting_676103(82685100, -), ADediting_676104(82685108, -), ADediting_676105(82686005, -), ADediting_676106(82686074, -), ADediting_676107(82686276, -), ADediting_676108(82687623, -), ADediting_676109(82687809, -), ADediting_676110(82687820, -), ADediting_676111(82687827, -), ADediting_676112(82687837, -), ADediting_676113(82687854, -), ADediting_676114(82687855, -), ADediting_676115(82687880, -), ADediting_676116(82687920, -), ADediting_676117(82687950, -), ADediting_676118(82688046, -), ADediting_676119(82688053, -), ADediting_676120(82688186, -), ADediting_676121(82688204, -), ADediting_676122(82688221, -), ADediting_676123(82688230, -), ADediting_676124(82688277, -), ADediting_676125(82688278, -), ADediting_676126(82688284, -), ADediting_676127(82688286, -), ADediting_676128(82688358, -), ADediting_676129(82688370, -), ADediting_676130(82688822, -), ADediting_676131(82688851, -), ADediting_676132(82689884, -), ADediting_676133(82691599, -), ADediting_676134(82693063, -), ADediting_676135(82693079, -), ADediting_676136(82693108, -), ADediting_676137(82693131, -), ADediting_676138(82693141, -), ADediting_676139(82693147, -), ADediting_676140(82693167, -), ADediting_676141(82693170, -), ADediting_676142(82693175, -), ADediting_676143(82693176, -), ADediting_676144(82693180, -), ADediting_676145(82693200, -), ADediting_676146(82693202, -), ADediting_676147(82693210, -), ADediting_676148(82693211, -), ADediting_676149(82693220, -), ADediting_676150(82693225, -), ADediting_676151(82693233, -), ADediting_676152(82693241, -), ADediting_676153(82693244, -), ADediting_676154(82693265, -), ADediting_676155(82693274, -), ADediting_676156(82693280, -), ADediting_676157(82693826, -), ADediting_676158(82693838, -), ADediting_676159(82693866, -), ADediting_676160(82693895, -), ADediting_676161(82694273, -), ADediting_676162(82694285, -), ADediting_676163(82694286, -), ADediting_676164(82694295, -), ADediting_676165(82694319, -), ADediting_676166(82694325, -), ADediting_676167(82694362, -), ADediting_676168(82694371, -), ADediting_676169(82694383, -), ADediting_676170(82694392, -), ADediting_676171(82694410, -), ADediting_676172(82694420, -), ADediting_676173(82694424, -), ADediting_676174(82694431, -), ADediting_676175(82694432, -), ADediting_676176(82694449, -), ADediting_676177(82694456, -), ADediting_676178(82694463, -), ADediting_676179(82694469, -), ADediting_676180(82694470, -), ADediting_676181(82694475, -), ADediting_676182(82694506, -), ADediting_676183(82695239, -), ADediting_676184(82695254, -), ADediting_676185(82695259, -), ADediting_676186(82695264, -), ADediting_676187(82695268, -), ADediting_676188(82695284, -), ADediting_676189(82695303, -), ADediting_676190(82695329, -), ADediting_676191(82695330, -), ADediting_676192(82695356, -), ADediting_676193(82695368, -), ADediting_676194(82695370, -), ADediting_676195(82695374, -), ADediting_676196(82695380, -), ADediting_676197(82695385, -), ADediting_676198(82695386, -), ADediting_676199(82695393, -), ADediting_676200(82695395, -), ADediting_676201(82695396, -), ADediting_676202(82695419, -), ADediting_676203(82695440, -), ADediting_676204(82695462, -), ADediting_676205(82695469, -), ADediting_676206(82695588, -), ADediting_676207(82695593, -), ADediting_676208(82695599, -), ADediting_676209(82695600, -), ADediting_676210(82695627, -), ADediting_676211(82695649, -), ADediting_676212(82695704, -), ADediting_676213(82695710, -), ADediting_676214(82695904, -), ADediting_676215(82695966, -), ADediting_676216(82695981, -), ADediting_676217(82695985, -), ADediting_676218(82695998, -), ADediting_676219(82696007, -), ADediting_676220(82696008, -), ADediting_676221(82696026, -), ADediting_676222(82696034, -), ADediting_676223(82696037, -), ADediting_676224(82696043, -), ADediting_676225(82696049, -), ADediting_676226(82696052, -), ADediting_676227(82696063, -), ADediting_676228(82696071, -), ADediting_676229(82696073, -), ADediting_676230(82696077, -), ADediting_676231(82696097, -), ADediting_676232(82696102, -), ADediting_676233(82696107, -), ADediting_676234(82696140, -), ADediting_676235(82696149, -), ADediting_1550117(82656143, -), ADediting_1550118(82676628, -), ADediting_1550119(82688191, -), ADediting_1550120(82688300, -), ADediting_1550121(82689810, -), ADediting_1550122(82695365, -), ADediting_1550123(82695678, -), ADediting_1628929(82665718, -), ADediting_1628930(82694480, -), ADediting_1628931(82694494, -), |
Top |
RNA editing positional annotations for RAB40B using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_675998 | chr17_82656025_- | UTR3 |
| ADediting_675999 | chr17_82656034_- | UTR3 |
| ADediting_676000 | chr17_82656081_- | UTR3 |
| ADediting_676001 | chr17_82656086_- | UTR3 |
| ADediting_676002 | chr17_82656087_- | UTR3 |
| ADediting_676003 | chr17_82656100_- | UTR3 |
| ADediting_676004 | chr17_82656105_- | UTR3 |
| ADediting_676005 | chr17_82656116_- | UTR3 |
| ADediting_676006 | chr17_82656117_- | UTR3 |
| ADediting_676007 | chr17_82656118_- | UTR3 |
| ADediting_676008 | chr17_82656119_- | UTR3 |
| ADediting_676009 | chr17_82656120_- | UTR3 |
| ADediting_676010 | chr17_82656122_- | UTR3 |
| ADediting_676011 | chr17_82656127_- | UTR3 |
| ADediting_676012 | chr17_82656131_- | UTR3 |
| ADediting_676013 | chr17_82656142_- | UTR3 |
| ADediting_676014 | chr17_82656147_- | UTR3 |
| ADediting_676015 | chr17_82656152_- | UTR3 |
| ADediting_676016 | chr17_82656165_- | UTR3 |
| ADediting_676017 | chr17_82656167_- | UTR3 |
| ADediting_676018 | chr17_82656176_- | UTR3 |
| ADediting_676019 | chr17_82656205_- | UTR3 |
| ADediting_676020 | chr17_82656218_- | UTR3 |
| ADediting_676021 | chr17_82656219_- | UTR3 |
| ADediting_676022 | chr17_82656225_- | UTR3 |
| ADediting_676023 | chr17_82656227_- | UTR3 |
| ADediting_676024 | chr17_82656770_- | UTR3 |
| ADediting_676025 | chr17_82656771_- | UTR3 |
| ADediting_676026 | chr17_82656784_- | UTR3 |
| ADediting_676027 | chr17_82656848_- | UTR3 |
| ADediting_676028 | chr17_82656879_- | UTR3 |
| ADediting_676029 | chr17_82656892_- | UTR3 |
| ADediting_676030 | chr17_82656902_- | UTR3 |
| ADediting_676031 | chr17_82656951_- | UTR3 |
| ADediting_676032 | chr17_82656954_- | UTR3 |
| ADediting_676033 | chr17_82656975_- | UTR3 |
| ADediting_676034 | chr17_82656978_- | UTR3 |
| ADediting_676035 | chr17_82657009_- | UTR3 |
| ADediting_676036 | chr17_82665350_- | intronic |
| ADediting_676037 | chr17_82665423_- | intronic |
| ADediting_676038 | chr17_82665447_- | intronic |
| ADediting_676039 | chr17_82665453_- | intronic |
| ADediting_676040 | chr17_82665496_- | intronic |
| ADediting_676041 | chr17_82665622_- | intronic |
| ADediting_676042 | chr17_82665649_- | intronic |
| ADediting_676043 | chr17_82665650_- | intronic |
| ADediting_676044 | chr17_82665682_- | intronic |
| ADediting_676045 | chr17_82665751_- | intronic |
| ADediting_676046 | chr17_82665780_- | intronic |
| ADediting_676047 | chr17_82665820_- | intronic |
| ADediting_676048 | chr17_82665968_- | intronic |
| ADediting_676049 | chr17_82665971_- | intronic |
| ADediting_676050 | chr17_82666011_- | intronic |
| ADediting_676051 | chr17_82666191_- | intronic |
| ADediting_676052 | chr17_82666347_- | intronic |
| ADediting_676053 | chr17_82666534_- | intronic |
| ADediting_676054 | chr17_82669103_- | intronic |
| ADediting_676055 | chr17_82669219_- | intronic |
| ADediting_676056 | chr17_82669489_- | intronic |
| ADediting_676057 | chr17_82669558_- | intronic |
| ADediting_676058 | chr17_82669639_- | intronic |
| ADediting_676059 | chr17_82670281_- | intronic |
| ADediting_676060 | chr17_82670290_- | intronic |
| ADediting_676061 | chr17_82670323_- | intronic |
| ADediting_676062 | chr17_82670349_- | intronic |
| ADediting_676063 | chr17_82670358_- | intronic |
| ADediting_676064 | chr17_82670362_- | intronic |
| ADediting_676065 | chr17_82670363_- | intronic |
| ADediting_676066 | chr17_82670381_- | intronic |
| ADediting_676067 | chr17_82670388_- | intronic |
| ADediting_676068 | chr17_82670457_- | intronic |
| ADediting_676069 | chr17_82670460_- | intronic |
| ADediting_676070 | chr17_82670659_- | intronic |
| ADediting_676071 | chr17_82670672_- | intronic |
| ADediting_676072 | chr17_82670762_- | intronic |
| ADediting_676073 | chr17_82670805_- | intronic |
| ADediting_676074 | chr17_82670806_- | intronic |
| ADediting_676075 | chr17_82670812_- | intronic |
| ADediting_676076 | chr17_82672941_- | intronic |
| ADediting_676077 | chr17_82673024_- | intronic |
| ADediting_676078 | chr17_82673190_- | intronic |
| ADediting_676079 | chr17_82674300_- | intronic |
| ADediting_676080 | chr17_82676690_- | intronic |
| ADediting_676081 | chr17_82679150_- | intronic |
| ADediting_676082 | chr17_82679515_- | intronic |
| ADediting_676083 | chr17_82679556_- | intronic |
| ADediting_676084 | chr17_82680056_- | intronic |
| ADediting_676085 | chr17_82680233_- | intronic |
| ADediting_676086 | chr17_82680411_- | intronic |
| ADediting_676087 | chr17_82680827_- | intronic |
| ADediting_676088 | chr17_82680918_- | intronic |
| ADediting_676089 | chr17_82680947_- | intronic |
| ADediting_676090 | chr17_82680982_- | intronic |
| ADediting_676091 | chr17_82682955_- | intronic |
| ADediting_676092 | chr17_82682994_- | intronic |
| ADediting_676093 | chr17_82683060_- | intronic |
| ADediting_676094 | chr17_82683682_- | intronic |
| ADediting_676095 | chr17_82684857_- | intronic |
| ADediting_676096 | chr17_82684863_- | intronic |
| ADediting_676097 | chr17_82684897_- | intronic |
| ADediting_676098 | chr17_82684948_- | intronic |
| ADediting_676099 | chr17_82685031_- | intronic |
| ADediting_676100 | chr17_82685069_- | intronic |
| ADediting_676101 | chr17_82685074_- | intronic |
| ADediting_676102 | chr17_82685075_- | intronic |
| ADediting_676103 | chr17_82685100_- | intronic |
| ADediting_676104 | chr17_82685108_- | intronic |
| ADediting_676105 | chr17_82686005_- | intronic |
| ADediting_676106 | chr17_82686074_- | intronic |
| ADediting_676107 | chr17_82686276_- | intronic |
| ADediting_676108 | chr17_82687623_- | intronic |
| ADediting_676109 | chr17_82687809_- | intronic |
| ADediting_676110 | chr17_82687820_- | intronic |
| ADediting_676111 | chr17_82687827_- | intronic |
| ADediting_676112 | chr17_82687837_- | intronic |
| ADediting_676113 | chr17_82687854_- | intronic |
| ADediting_676114 | chr17_82687855_- | intronic |
| ADediting_676115 | chr17_82687880_- | intronic |
| ADediting_676116 | chr17_82687920_- | intronic |
| ADediting_676117 | chr17_82687950_- | intronic |
| ADediting_676118 | chr17_82688046_- | intronic |
| ADediting_676119 | chr17_82688053_- | intronic |
| ADediting_676120 | chr17_82688186_- | intronic |
| ADediting_676121 | chr17_82688204_- | intronic |
| ADediting_676122 | chr17_82688221_- | intronic |
| ADediting_676123 | chr17_82688230_- | intronic |
| ADediting_676124 | chr17_82688277_- | intronic |
| ADediting_676125 | chr17_82688278_- | intronic |
| ADediting_676126 | chr17_82688284_- | intronic |
| ADediting_676127 | chr17_82688286_- | intronic |
| ADediting_676128 | chr17_82688358_- | intronic |
| ADediting_676129 | chr17_82688370_- | intronic |
| ADediting_676130 | chr17_82688822_- | intronic |
| ADediting_676131 | chr17_82688851_- | intronic |
| ADediting_676132 | chr17_82689884_- | intronic |
| ADediting_676133 | chr17_82691599_- | intronic |
| ADediting_676134 | chr17_82693063_- | intronic |
| ADediting_676135 | chr17_82693079_- | intronic |
| ADediting_676136 | chr17_82693108_- | intronic |
| ADediting_676137 | chr17_82693131_- | intronic |
| ADediting_676138 | chr17_82693141_- | intronic |
| ADediting_676139 | chr17_82693147_- | intronic |
| ADediting_676140 | chr17_82693167_- | intronic |
| ADediting_676141 | chr17_82693170_- | intronic |
| ADediting_676142 | chr17_82693175_- | intronic |
| ADediting_676143 | chr17_82693176_- | intronic |
| ADediting_676144 | chr17_82693180_- | intronic |
| ADediting_676145 | chr17_82693200_- | intronic |
| ADediting_676146 | chr17_82693202_- | intronic |
| ADediting_676147 | chr17_82693210_- | intronic |
| ADediting_676148 | chr17_82693211_- | intronic |
| ADediting_676149 | chr17_82693220_- | intronic |
| ADediting_676150 | chr17_82693225_- | intronic |
| ADediting_676151 | chr17_82693233_- | intronic |
| ADediting_676152 | chr17_82693241_- | intronic |
| ADediting_676153 | chr17_82693244_- | intronic |
| ADediting_676154 | chr17_82693265_- | intronic |
| ADediting_676155 | chr17_82693274_- | intronic |
| ADediting_676156 | chr17_82693280_- | intronic |
| ADediting_676157 | chr17_82693826_- | intronic |
| ADediting_676158 | chr17_82693838_- | intronic |
| ADediting_676159 | chr17_82693866_- | intronic |
| ADediting_676160 | chr17_82693895_- | intronic |
| ADediting_676161 | chr17_82694273_- | intronic |
| ADediting_676162 | chr17_82694285_- | intronic |
| ADediting_676163 | chr17_82694286_- | intronic |
| ADediting_676164 | chr17_82694295_- | intronic |
| ADediting_676165 | chr17_82694319_- | intronic |
| ADediting_676166 | chr17_82694325_- | intronic |
| ADediting_676167 | chr17_82694362_- | intronic |
| ADediting_676168 | chr17_82694371_- | intronic |
| ADediting_676169 | chr17_82694383_- | intronic |
| ADediting_676170 | chr17_82694392_- | intronic |
| ADediting_676171 | chr17_82694410_- | intronic |
| ADediting_676172 | chr17_82694420_- | intronic |
| ADediting_676173 | chr17_82694424_- | intronic |
| ADediting_676174 | chr17_82694431_- | intronic |
| ADediting_676175 | chr17_82694432_- | intronic |
| ADediting_676176 | chr17_82694449_- | intronic |
| ADediting_676177 | chr17_82694456_- | intronic |
| ADediting_676178 | chr17_82694463_- | intronic |
| ADediting_676179 | chr17_82694469_- | intronic |
| ADediting_676180 | chr17_82694470_- | intronic |
| ADediting_676181 | chr17_82694475_- | intronic |
| ADediting_676182 | chr17_82694506_- | intronic |
| ADediting_676183 | chr17_82695239_- | intronic |
| ADediting_676184 | chr17_82695254_- | intronic |
| ADediting_676185 | chr17_82695259_- | intronic |
| ADediting_676186 | chr17_82695264_- | intronic |
| ADediting_676187 | chr17_82695268_- | intronic |
| ADediting_676188 | chr17_82695284_- | intronic |
| ADediting_676189 | chr17_82695303_- | intronic |
| ADediting_676190 | chr17_82695329_- | intronic |
| ADediting_676191 | chr17_82695330_- | intronic |
| ADediting_676192 | chr17_82695356_- | intronic |
| ADediting_676193 | chr17_82695368_- | intronic |
| ADediting_676194 | chr17_82695370_- | intronic |
| ADediting_676195 | chr17_82695374_- | intronic |
| ADediting_676196 | chr17_82695380_- | intronic |
| ADediting_676197 | chr17_82695385_- | intronic |
| ADediting_676198 | chr17_82695386_- | intronic |
| ADediting_676199 | chr17_82695393_- | intronic |
| ADediting_676200 | chr17_82695395_- | intronic |
| ADediting_676201 | chr17_82695396_- | intronic |
| ADediting_676202 | chr17_82695419_- | intronic |
| ADediting_676203 | chr17_82695440_- | intronic |
| ADediting_676204 | chr17_82695462_- | intronic |
| ADediting_676205 | chr17_82695469_- | intronic |
| ADediting_676206 | chr17_82695588_- | intronic |
| ADediting_676207 | chr17_82695593_- | intronic |
| ADediting_676208 | chr17_82695599_- | intronic |
| ADediting_676209 | chr17_82695600_- | intronic |
| ADediting_676210 | chr17_82695627_- | intronic |
| ADediting_676211 | chr17_82695649_- | intronic |
| ADediting_676212 | chr17_82695704_- | intronic |
| ADediting_676213 | chr17_82695710_- | intronic |
| ADediting_676214 | chr17_82695904_- | intronic |
| ADediting_676215 | chr17_82695966_- | intronic |
| ADediting_676216 | chr17_82695981_- | intronic |
| ADediting_676217 | chr17_82695985_- | intronic |
| ADediting_676218 | chr17_82695998_- | intronic |
| ADediting_676219 | chr17_82696007_- | intronic |
| ADediting_676220 | chr17_82696008_- | intronic |
| ADediting_676221 | chr17_82696026_- | intronic |
| ADediting_676222 | chr17_82696034_- | intronic |
| ADediting_676223 | chr17_82696037_- | intronic |
| ADediting_676224 | chr17_82696043_- | intronic |
| ADediting_676225 | chr17_82696049_- | intronic |
| ADediting_676226 | chr17_82696052_- | intronic |
| ADediting_676227 | chr17_82696063_- | intronic |
| ADediting_676228 | chr17_82696071_- | intronic |
| ADediting_676229 | chr17_82696073_- | intronic |
| ADediting_676230 | chr17_82696077_- | intronic |
| ADediting_676231 | chr17_82696097_- | intronic |
| ADediting_676232 | chr17_82696102_- | intronic |
| ADediting_676233 | chr17_82696107_- | intronic |
| ADediting_676234 | chr17_82696140_- | intronic |
| ADediting_676235 | chr17_82696149_- | intronic |
| ADediting_1550117 | chr17_82656143_- | UTR3 |
| ADediting_1550118 | chr17_82676628_- | intronic |
| ADediting_1550119 | chr17_82688191_- | intronic |
| ADediting_1550120 | chr17_82688300_- | intronic |
| ADediting_1550121 | chr17_82689810_- | intronic |
| ADediting_1550122 | chr17_82695365_- | intronic |
| ADediting_1550123 | chr17_82695678_- | intronic |
| ADediting_1628929 | chr17_82665718_- | intronic |
| ADediting_1628930 | chr17_82694480_- | intronic |
| ADediting_1628931 | chr17_82694494_- | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_675998 | chr17_82656025_- | SINE | Alu | Name=AluSg |
| ADediting_675999 | chr17_82656034_- | SINE | Alu | Name=AluSg |
| ADediting_676000 | chr17_82656081_- | SINE | Alu | Name=AluSg |
| ADediting_676001 | chr17_82656086_- | SINE | Alu | Name=AluSg |
| ADediting_676002 | chr17_82656087_- | SINE | Alu | Name=AluSg |
| ADediting_676003 | chr17_82656100_- | SINE | Alu | Name=AluSg |
| ADediting_676004 | chr17_82656105_- | SINE | Alu | Name=AluSg |
| ADediting_676005 | chr17_82656116_- | SINE | Alu | Name=AluSg |
| ADediting_676006 | chr17_82656117_- | SINE | Alu | Name=AluSg |
| ADediting_676007 | chr17_82656118_- | SINE | Alu | Name=AluSg |
| ADediting_676008 | chr17_82656119_- | SINE | Alu | Name=AluSg |
| ADediting_676009 | chr17_82656120_- | SINE | Alu | Name=AluSg |
| ADediting_676010 | chr17_82656122_- | SINE | Alu | Name=AluSg |
| ADediting_676011 | chr17_82656127_- | SINE | Alu | Name=AluSg |
| ADediting_676012 | chr17_82656131_- | SINE | Alu | Name=AluSg |
| ADediting_676013 | chr17_82656142_- | SINE | Alu | Name=AluSg |
| ADediting_676014 | chr17_82656147_- | SINE | Alu | Name=AluSg |
| ADediting_676015 | chr17_82656152_- | SINE | Alu | Name=AluSg |
| ADediting_676016 | chr17_82656165_- | SINE | Alu | Name=AluSg |
| ADediting_676017 | chr17_82656167_- | SINE | Alu | Name=AluSg |
| ADediting_676018 | chr17_82656176_- | SINE | Alu | Name=AluSg |
| ADediting_676019 | chr17_82656205_- | SINE | Alu | Name=AluSg |
| ADediting_676020 | chr17_82656218_- | SINE | Alu | Name=AluSg |
| ADediting_676021 | chr17_82656219_- | SINE | Alu | Name=AluSg |
| ADediting_676022 | chr17_82656225_- | SINE | Alu | Name=AluSg |
| ADediting_676023 | chr17_82656227_- | SINE | Alu | Name=AluSg |
| ADediting_676024 | chr17_82656770_- | SINE | Alu | Name=AluSp |
| ADediting_676025 | chr17_82656771_- | SINE | Alu | Name=AluSp |
| ADediting_676026 | chr17_82656784_- | SINE | Alu | Name=AluSp |
| ADediting_676027 | chr17_82656848_- | SINE | Alu | Name=AluSp |
| ADediting_676028 | chr17_82656879_- | SINE | Alu | Name=AluSp |
| ADediting_676029 | chr17_82656892_- | SINE | Alu | Name=AluSp |
| ADediting_676030 | chr17_82656902_- | SINE | Alu | Name=AluSp |
| ADediting_676031 | chr17_82656951_- | SINE | Alu | Name=AluSp |
| ADediting_676032 | chr17_82656954_- | SINE | Alu | Name=AluSp |
| ADediting_676033 | chr17_82656975_- | SINE | Alu | Name=AluSp |
| ADediting_676034 | chr17_82656978_- | SINE | Alu | Name=AluSp |
| ADediting_676035 | chr17_82657009_- | SINE | Alu | Name=AluSp |
| ADediting_676036 | chr17_82665350_- | SINE | Alu | Name=AluJb |
| ADediting_676037 | chr17_82665423_- | SINE | Alu | Name=AluJb |
| ADediting_676038 | chr17_82665447_- | SINE | Alu | Name=AluJb |
| ADediting_676039 | chr17_82665453_- | SINE | Alu | Name=AluJb |
| ADediting_676040 | chr17_82665496_- | SINE | Alu | Name=AluJb |
| ADediting_676041 | chr17_82665622_- | SINE | Alu | Name=AluSx1 |
| ADediting_676042 | chr17_82665649_- | SINE | Alu | Name=AluSx1 |
| ADediting_676043 | chr17_82665650_- | SINE | Alu | Name=AluSx1 |
| ADediting_676044 | chr17_82665682_- | SINE | Alu | Name=AluSx1 |
| ADediting_676045 | chr17_82665751_- | SINE | Alu | Name=AluSx1 |
| ADediting_676046 | chr17_82665780_- | SINE | Alu | Name=AluSx1 |
| ADediting_676047 | chr17_82665820_- | SINE | Alu | Name=AluSx1 |
| ADediting_676048 | chr17_82665968_- | SINE | Alu | Name=AluJo |
| ADediting_676049 | chr17_82665971_- | SINE | Alu | Name=AluJo |
| ADediting_676050 | chr17_82666011_- | SINE | Alu | Name=AluJo |
| ADediting_676051 | chr17_82666191_- | SINE | Alu | Name=AluJo |
| ADediting_676052 | chr17_82666347_- | SINE | Alu | Name=AluSq |
| ADediting_676053 | chr17_82666534_- | SINE | Alu | Name=AluSq |
| ADediting_676054 | chr17_82669103_- | SINE | Alu | Name=AluJr |
| ADediting_676055 | chr17_82669219_- | SINE | Alu | Name=AluSp |
| ADediting_676056 | chr17_82669489_- | SINE | Alu | Name=AluSp |
| ADediting_676057 | chr17_82669558_- | SINE | Alu | Name=AluJr |
| ADediting_676058 | chr17_82669639_- | SINE | Alu | Name=AluJr |
| ADediting_676059 | chr17_82670281_- | SINE | Alu | Name=AluSz6 |
| ADediting_676060 | chr17_82670290_- | SINE | Alu | Name=AluSz6 |
| ADediting_676061 | chr17_82670323_- | SINE | Alu | Name=AluSz6 |
| ADediting_676062 | chr17_82670349_- | SINE | Alu | Name=AluSz6 |
| ADediting_676063 | chr17_82670358_- | SINE | Alu | Name=AluSz6 |
| ADediting_676064 | chr17_82670362_- | SINE | Alu | Name=AluSz6 |
| ADediting_676065 | chr17_82670363_- | SINE | Alu | Name=AluSz6 |
| ADediting_676066 | chr17_82670381_- | SINE | Alu | Name=AluSz6 |
| ADediting_676067 | chr17_82670388_- | SINE | Alu | Name=AluSz6 |
| ADediting_676068 | chr17_82670457_- | SINE | Alu | Name=AluSz6 |
| ADediting_676069 | chr17_82670460_- | SINE | Alu | Name=AluSz6 |
| ADediting_676070 | chr17_82670659_- | SINE | Alu | Name=AluSg |
| ADediting_676071 | chr17_82670672_- | SINE | Alu | Name=AluSg |
| ADediting_676072 | chr17_82670762_- | SINE | Alu | Name=AluSg |
| ADediting_676073 | chr17_82670805_- | SINE | Alu | Name=AluSg |
| ADediting_676074 | chr17_82670806_- | SINE | Alu | Name=AluSg |
| ADediting_676075 | chr17_82670812_- | SINE | Alu | Name=AluSg |
| ADediting_676076 | chr17_82672941_- | SINE | Alu | Name=AluSx1 |
| ADediting_676077 | chr17_82673024_- | SINE | Alu | Name=AluSx1 |
| ADediting_676078 | chr17_82673190_- | SINE | Alu | Name=AluSx1 |
| ADediting_676079 | chr17_82674300_- | SINE | Alu | Name=AluSq2 |
| ADediting_676080 | chr17_82676690_- | SINE | Alu | Name=AluSx1 |
| ADediting_676081 | chr17_82679150_- | SINE | Alu | Name=AluY |
| ADediting_676082 | chr17_82679515_- | SINE | Alu | Name=AluY |
| ADediting_676083 | chr17_82679556_- | SINE | Alu | Name=AluY |
| ADediting_676087 | chr17_82680827_- | SINE | Alu | Name=AluSg |
| ADediting_676088 | chr17_82680918_- | SINE | Alu | Name=AluSg |
| ADediting_676089 | chr17_82680947_- | SINE | Alu | Name=AluSg |
| ADediting_676090 | chr17_82680982_- | SINE | Alu | Name=AluSg |
| ADediting_676091 | chr17_82682955_- | SINE | Alu | Name=AluSc8 |
| ADediting_676092 | chr17_82682994_- | SINE | Alu | Name=AluSc8 |
| ADediting_676093 | chr17_82683060_- | SINE | Alu | Name=AluSc8 |
| ADediting_676094 | chr17_82683682_- | SINE | Alu | Name=AluJr |
| ADediting_676095 | chr17_82684857_- | SINE | Alu | Name=AluSq2 |
| ADediting_676096 | chr17_82684863_- | SINE | Alu | Name=AluSq2 |
| ADediting_676097 | chr17_82684897_- | SINE | Alu | Name=AluSq2 |
| ADediting_676098 | chr17_82684948_- | SINE | Alu | Name=AluSq2 |
| ADediting_676099 | chr17_82685031_- | SINE | Alu | Name=AluSq2 |
| ADediting_676100 | chr17_82685069_- | SINE | Alu | Name=AluSq2 |
| ADediting_676101 | chr17_82685074_- | SINE | Alu | Name=AluSq2 |
| ADediting_676102 | chr17_82685075_- | SINE | Alu | Name=AluSq2 |
| ADediting_676103 | chr17_82685100_- | SINE | Alu | Name=AluSq2 |
| ADediting_676104 | chr17_82685108_- | SINE | Alu | Name=AluSq2 |
| ADediting_676105 | chr17_82686005_- | SINE | Alu | Name=AluSg |
| ADediting_676106 | chr17_82686074_- | SINE | Alu | Name=AluSg |
| ADediting_676107 | chr17_82686276_- | SINE | Alu | Name=AluSx1 |
| ADediting_676109 | chr17_82687809_- | SINE | Alu | Name=AluJo |
| ADediting_676110 | chr17_82687820_- | SINE | Alu | Name=AluJo |
| ADediting_676111 | chr17_82687827_- | SINE | Alu | Name=AluJo |
| ADediting_676112 | chr17_82687837_- | SINE | Alu | Name=AluJo |
| ADediting_676113 | chr17_82687854_- | SINE | Alu | Name=AluJo |
| ADediting_676114 | chr17_82687855_- | SINE | Alu | Name=AluJo |
| ADediting_676115 | chr17_82687880_- | SINE | Alu | Name=AluJo |
| ADediting_676116 | chr17_82687920_- | SINE | Alu | Name=AluJo |
| ADediting_676117 | chr17_82687950_- | SINE | Alu | Name=AluJo |
| ADediting_676118 | chr17_82688046_- | SINE | Alu | Name=AluJo |
| ADediting_676119 | chr17_82688053_- | SINE | Alu | Name=AluJo |
| ADediting_676120 | chr17_82688186_- | SINE | Alu | Name=AluJr4 |
| ADediting_676121 | chr17_82688204_- | SINE | Alu | Name=AluJr4 |
| ADediting_676122 | chr17_82688221_- | SINE | Alu | Name=AluJr4 |
| ADediting_676123 | chr17_82688230_- | SINE | Alu | Name=AluJr4 |
| ADediting_676124 | chr17_82688277_- | SINE | Alu | Name=AluJr4 |
| ADediting_676125 | chr17_82688278_- | SINE | Alu | Name=AluJr4 |
| ADediting_676126 | chr17_82688284_- | SINE | Alu | Name=AluJr4 |
| ADediting_676127 | chr17_82688286_- | SINE | Alu | Name=AluJr4 |
| ADediting_676128 | chr17_82688358_- | SINE | Alu | Name=AluSx3 |
| ADediting_676129 | chr17_82688370_- | SINE | Alu | Name=AluSx3 |
| ADediting_676130 | chr17_82688822_- | SINE | Alu | Name=AluSx |
| ADediting_676131 | chr17_82688851_- | SINE | Alu | Name=AluSx |
| ADediting_676132 | chr17_82689884_- | SINE | Alu | Name=AluSg7 |
| ADediting_676133 | chr17_82691599_- | SINE | Alu | Name=AluSx |
| ADediting_676134 | chr17_82693063_- | SINE | Alu | Name=AluSx1 |
| ADediting_676135 | chr17_82693079_- | SINE | Alu | Name=AluSx1 |
| ADediting_676136 | chr17_82693108_- | SINE | Alu | Name=AluSx1 |
| ADediting_676137 | chr17_82693131_- | SINE | Alu | Name=AluSx1 |
| ADediting_676138 | chr17_82693141_- | SINE | Alu | Name=AluSx1 |
| ADediting_676139 | chr17_82693147_- | SINE | Alu | Name=AluSx1 |
| ADediting_676140 | chr17_82693167_- | SINE | Alu | Name=AluSx1 |
| ADediting_676141 | chr17_82693170_- | SINE | Alu | Name=AluSx1 |
| ADediting_676142 | chr17_82693175_- | SINE | Alu | Name=AluSx1 |
| ADediting_676143 | chr17_82693176_- | SINE | Alu | Name=AluSx1 |
| ADediting_676144 | chr17_82693180_- | SINE | Alu | Name=AluSx1 |
| ADediting_676145 | chr17_82693200_- | SINE | Alu | Name=AluSx1 |
| ADediting_676146 | chr17_82693202_- | SINE | Alu | Name=AluSx1 |
| ADediting_676147 | chr17_82693210_- | SINE | Alu | Name=AluSx1 |
| ADediting_676148 | chr17_82693211_- | SINE | Alu | Name=AluSx1 |
| ADediting_676149 | chr17_82693220_- | SINE | Alu | Name=AluSx1 |
| ADediting_676150 | chr17_82693225_- | SINE | Alu | Name=AluSx1 |
| ADediting_676151 | chr17_82693233_- | SINE | Alu | Name=AluSx1 |
| ADediting_676152 | chr17_82693241_- | SINE | Alu | Name=AluSx1 |
| ADediting_676153 | chr17_82693244_- | SINE | Alu | Name=AluSx1 |
| ADediting_676154 | chr17_82693265_- | SINE | Alu | Name=AluSx1 |
| ADediting_676155 | chr17_82693274_- | SINE | Alu | Name=AluSx1 |
| ADediting_676156 | chr17_82693280_- | SINE | Alu | Name=AluSx1 |
| ADediting_676157 | chr17_82693826_- | SINE | Alu | Name=AluSx |
| ADediting_676158 | chr17_82693838_- | SINE | Alu | Name=AluSx |
| ADediting_676159 | chr17_82693866_- | SINE | Alu | Name=AluSx |
| ADediting_676160 | chr17_82693895_- | SINE | Alu | Name=AluSx |
| ADediting_676161 | chr17_82694273_- | SINE | Alu | Name=AluSx1 |
| ADediting_676162 | chr17_82694285_- | SINE | Alu | Name=AluSx1 |
| ADediting_676163 | chr17_82694286_- | SINE | Alu | Name=AluSx1 |
| ADediting_676164 | chr17_82694295_- | SINE | Alu | Name=AluSx1 |
| ADediting_676165 | chr17_82694319_- | SINE | Alu | Name=AluSx1 |
| ADediting_676166 | chr17_82694325_- | SINE | Alu | Name=AluSx1 |
| ADediting_676167 | chr17_82694362_- | SINE | Alu | Name=AluSx1 |
| ADediting_676168 | chr17_82694371_- | SINE | Alu | Name=AluSx1 |
| ADediting_676169 | chr17_82694383_- | SINE | Alu | Name=AluSx1 |
| ADediting_676170 | chr17_82694392_- | SINE | Alu | Name=AluSx1 |
| ADediting_676171 | chr17_82694410_- | SINE | Alu | Name=AluSx1 |
| ADediting_676172 | chr17_82694420_- | SINE | Alu | Name=AluSx1 |
| ADediting_676173 | chr17_82694424_- | SINE | Alu | Name=AluSx1 |
| ADediting_676174 | chr17_82694431_- | SINE | Alu | Name=AluSx1 |
| ADediting_676175 | chr17_82694432_- | SINE | Alu | Name=AluSx1 |
| ADediting_676176 | chr17_82694449_- | SINE | Alu | Name=AluSx1 |
| ADediting_676177 | chr17_82694456_- | SINE | Alu | Name=AluSx1 |
| ADediting_676178 | chr17_82694463_- | SINE | Alu | Name=AluSx1 |
| ADediting_676179 | chr17_82694469_- | SINE | Alu | Name=AluSx1 |
| ADediting_676180 | chr17_82694470_- | SINE | Alu | Name=AluSx1 |
| ADediting_676181 | chr17_82694475_- | SINE | Alu | Name=AluSx1 |
| ADediting_676182 | chr17_82694506_- | SINE | Alu | Name=AluSx1 |
| ADediting_676183 | chr17_82695239_- | SINE | Alu | Name=AluSg |
| ADediting_676184 | chr17_82695254_- | SINE | Alu | Name=AluSg |
| ADediting_676185 | chr17_82695259_- | SINE | Alu | Name=AluSg |
| ADediting_676186 | chr17_82695264_- | SINE | Alu | Name=AluSg |
| ADediting_676187 | chr17_82695268_- | SINE | Alu | Name=AluSg |
| ADediting_676188 | chr17_82695284_- | SINE | Alu | Name=AluSg |
| ADediting_676189 | chr17_82695303_- | SINE | Alu | Name=AluSg |
| ADediting_676190 | chr17_82695329_- | SINE | Alu | Name=AluSg |
| ADediting_676191 | chr17_82695330_- | SINE | Alu | Name=AluSg |
| ADediting_676192 | chr17_82695356_- | SINE | Alu | Name=AluSg |
| ADediting_676193 | chr17_82695368_- | SINE | Alu | Name=AluSg |
| ADediting_676194 | chr17_82695370_- | SINE | Alu | Name=AluSg |
| ADediting_676195 | chr17_82695374_- | SINE | Alu | Name=AluSg |
| ADediting_676196 | chr17_82695380_- | SINE | Alu | Name=AluSg |
| ADediting_676197 | chr17_82695385_- | SINE | Alu | Name=AluSg |
| ADediting_676198 | chr17_82695386_- | SINE | Alu | Name=AluSg |
| ADediting_676199 | chr17_82695393_- | SINE | Alu | Name=AluSg |
| ADediting_676200 | chr17_82695395_- | SINE | Alu | Name=AluSg |
| ADediting_676201 | chr17_82695396_- | SINE | Alu | Name=AluSg |
| ADediting_676202 | chr17_82695419_- | SINE | Alu | Name=AluSg |
| ADediting_676203 | chr17_82695440_- | SINE | Alu | Name=AluSg |
| ADediting_676204 | chr17_82695462_- | SINE | Alu | Name=AluSg |
| ADediting_676205 | chr17_82695469_- | SINE | Alu | Name=AluSg |
| ADediting_676206 | chr17_82695588_- | SINE | Alu | Name=AluJb |
| ADediting_676207 | chr17_82695593_- | SINE | Alu | Name=AluJb |
| ADediting_676208 | chr17_82695599_- | SINE | Alu | Name=AluJb |
| ADediting_676209 | chr17_82695600_- | SINE | Alu | Name=AluJb |
| ADediting_676210 | chr17_82695627_- | SINE | Alu | Name=AluJb |
| ADediting_676211 | chr17_82695649_- | SINE | Alu | Name=AluJb |
| ADediting_676212 | chr17_82695704_- | SINE | Alu | Name=AluJb |
| ADediting_676213 | chr17_82695710_- | SINE | Alu | Name=AluJb |
| ADediting_676214 | chr17_82695904_- | SINE | Alu | Name=AluSp |
| ADediting_676215 | chr17_82695966_- | SINE | Alu | Name=AluSp |
| ADediting_676216 | chr17_82695981_- | SINE | Alu | Name=AluSp |
| ADediting_676217 | chr17_82695985_- | SINE | Alu | Name=AluSp |
| ADediting_676218 | chr17_82695998_- | SINE | Alu | Name=AluSp |
| ADediting_676219 | chr17_82696007_- | SINE | Alu | Name=AluSp |
| ADediting_676220 | chr17_82696008_- | SINE | Alu | Name=AluSp |
| ADediting_676221 | chr17_82696026_- | SINE | Alu | Name=AluSp |
| ADediting_676222 | chr17_82696034_- | SINE | Alu | Name=AluSp |
| ADediting_676223 | chr17_82696037_- | SINE | Alu | Name=AluSp |
| ADediting_676224 | chr17_82696043_- | SINE | Alu | Name=AluSp |
| ADediting_676225 | chr17_82696049_- | SINE | Alu | Name=AluSp |
| ADediting_676226 | chr17_82696052_- | SINE | Alu | Name=AluSp |
| ADediting_676227 | chr17_82696063_- | SINE | Alu | Name=AluSp |
| ADediting_676228 | chr17_82696071_- | SINE | Alu | Name=AluSp |
| ADediting_676229 | chr17_82696073_- | SINE | Alu | Name=AluSp |
| ADediting_676230 | chr17_82696077_- | SINE | Alu | Name=AluSp |
| ADediting_676231 | chr17_82696097_- | SINE | Alu | Name=AluSp |
| ADediting_676232 | chr17_82696102_- | SINE | Alu | Name=AluSp |
| ADediting_676233 | chr17_82696107_- | SINE | Alu | Name=AluSp |
| ADediting_676234 | chr17_82696140_- | SINE | Alu | Name=AluSp |
| ADediting_676235 | chr17_82696149_- | SINE | Alu | Name=AluSp |
| ADediting_1550117 | chr17_82656143_- | SINE | Alu | Name=AluSg |
| ADediting_1550118 | chr17_82676628_- | SINE | Alu | Name=AluSx1 |
| ADediting_1550119 | chr17_82688191_- | SINE | Alu | Name=AluJr4 |
| ADediting_1550120 | chr17_82688300_- | SINE | Alu | Name=AluJr4 |
| ADediting_1550121 | chr17_82689810_- | SINE | Alu | Name=AluSg7 |
| ADediting_1550122 | chr17_82695365_- | SINE | Alu | Name=AluSg |
| ADediting_1550123 | chr17_82695678_- | SINE | Alu | Name=AluJb |
| ADediting_1628929 | chr17_82665718_- | SINE | Alu | Name=AluSx1 |
| ADediting_1628930 | chr17_82694480_- | SINE | Alu | Name=AluSx1 |
| ADediting_1628931 | chr17_82694494_- | SINE | Alu | Name=AluSx1 |
Top |
RNA A-to-I editing events in the alternative splicing sites for RAB40B |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| ES | ADediting_676018 | chr17_82656176_- | 82656174:82656182 | 5ss | 4i | GAGGTCAGG | 4.94 | GAGGTCGGG | 1.63 |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for RAB40B |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
 | |
 | |
 | |
 | |
 | |
 | |
| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
 |
 |
 |
 |
 |
 |
| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
Top |
Protein coding region RNA A-to-I editings for RAB40B |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
Top |
The effects of the RNA editing to the miRNA binding sites for RAB40B |
| RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_675999 | chr17_82656034_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-1281 | chr17 | 82656034 | 82656040 | 7mer-m8 | 82656033 | 82656049 | 141 | -17.01 |
| ADediting_676002 | chr17_82656087_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-513a-5p | chr17 | 82656086 | 82656092 | 7mer-m8 | 82656085 | 82656102 | 143 | -16.73 |
| ADediting_676002 | chr17_82656087_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-638 | chr17 | 82656081 | 82656087 | 7mer-1a | 82656081 | 82656104 | 153 | -32.46 |
| ADediting_676004 | chr17_82656105_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-12121 | chr17 | 82656100 | 82656106 | 7mer-m8 | 82656099 | 82656118 | 141 | -24.44 |
| ADediting_676006 | chr17_82656117_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6844 | chr17 | 82656116 | 82656122 | 7mer-m8 | 82656115 | 82656136 | 155 | -7.4 |
| ADediting_676007 | chr17_82656118_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-578 | chr17 | 82656116 | 82656122 | 7mer-m8 | 82656115 | 82656135 | 145 | -7.59 |
| ADediting_676008 | chr17_82656119_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-3686 | chr17 | 82656117 | 82656124 | 8mer-1a | 82656117 | 82656138 | 140 | -9.95 |
| ADediting_676010 | chr17_82656122_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-450b-5p | chr17 | 82656117 | 82656124 | 8mer-1a | 82656117 | 82656139 | 150 | -9.26 |
| ADediting_676011 | chr17_82656127_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-4482-3p | chr17 | 82656125 | 82656131 | 7mer-m8 | 82656124 | 82656144 | 145 | -16.58 |
| ADediting_676012 | chr17_82656131_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-361-5p | chr17 | 82656127 | 82656134 | 8mer-1a | 82656127 | 82656144 | 143 | -18.24 |
| ADediting_676012 | chr17_82656131_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-374a-3p | chr17 | 82656126 | 82656133 | 8mer-1a | 82656126 | 82656147 | 145 | -8.35 |
| ADediting_676013 | chr17_82656142_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-4508 | chr17 | 82656137 | 82656143 | 7mer-m8 | 82656136 | 82656153 | 142 | -24.98 |
| ADediting_676014 | chr17_82656147_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-197-3p | chr17 | 82656143 | 82656150 | 8mer-1a | 82656143 | 82656164 | 156 | -16.91 |
| ADediting_676015 | chr17_82656152_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-3190-5p | chr17 | 82656152 | 82656158 | 7mer-m8 | 82656151 | 82656170 | 152 | -19.64 |
| ADediting_676016 | chr17_82656165_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-193a-3p | chr17 | 82656160 | 82656166 | 7mer-m8 | 82656159 | 82656179 | 152 | -19.23 |
| ADediting_676016 | chr17_82656165_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-193b-3p | chr17 | 82656160 | 82656166 | 7mer-m8 | 82656159 | 82656179 | 154 | -16.98 |
| ADediting_676016 | chr17_82656165_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-3176 | chr17 | 82656161 | 82656167 | 7mer-m8 | 82656160 | 82656178 | 160 | -24.78 |
| ADediting_676016 | chr17_82656165_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-3922-3p | chr17 | 82656161 | 82656167 | 7mer-m8 | 82656160 | 82656185 | 170 | -30.03 |
| ADediting_676017 | chr17_82656167_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-12113 | chr17 | 82656167 | 82656173 | 7mer-m8 | 82656166 | 82656189 | 151 | -18 |
| ADediting_676017 | chr17_82656167_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-4539 | chr17 | 82656167 | 82656173 | 7mer-m8 | 82656166 | 82656185 | 151 | -19.22 |
| ADediting_676021 | chr17_82656219_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-513a-5p | chr17 | 82656218 | 82656224 | 7mer-m8 | 82656217 | 82656237 | 147 | -18.98 |
| ADediting_676021 | chr17_82656219_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-638 | chr17 | 82656213 | 82656219 | 7mer-1a | 82656213 | 82656237 | 151 | -29.55 |
| ADediting_676024 | chr17_82656770_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-3192-5p | chr17 | 82656769 | 82656776 | 8mer-1a | 82656769 | 82656788 | 156 | -25.88 |
| ADediting_676024 | chr17_82656770_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-326 | chr17 | 82656768 | 82656774 | 7mer-m8 | 82656767 | 82656786 | 140 | -14.14 |
| ADediting_676024 | chr17_82656770_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-330-5p | chr17 | 82656768 | 82656774 | 7mer-m8 | 82656767 | 82656788 | 140 | -21.34 |
| ADediting_676024 | chr17_82656770_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-4314 | chr17 | 82656769 | 82656775 | 7mer-m8 | 82656768 | 82656785 | 140 | -18.8 |
| ADediting_676024 | chr17_82656770_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-514a-5p | chr17 | 82656767 | 82656773 | 7mer-m8 | 82656766 | 82656786 | 154 | -19.44 |
| ADediting_676025 | chr17_82656771_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6771-5p | chr17 | 82656769 | 82656776 | 8mer-1a | 82656769 | 82656790 | 159 | -26.64 |
| ADediting_676028 | chr17_82656879_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-4746-3p | chr17 | 82656878 | 82656884 | 7mer-m8 | 82656877 | 82656897 | 152 | -21.36 |
| ADediting_676030 | chr17_82656902_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-4691-3p | chr17 | 82656898 | 82656904 | 7mer-m8 | 82656897 | 82656924 | 150 | -26.36 |
| ADediting_676031 | chr17_82656951_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-485-5p | chr17 | 82656947 | 82656953 | 7mer-m8 | 82656946 | 82656966 | 145 | -18.51 |
| ADediting_676031 | chr17_82656951_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6884-5p | chr17 | 82656947 | 82656953 | 7mer-m8 | 82656946 | 82656964 | 145 | -20.84 |
| ADediting_676031 | chr17_82656951_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-7974 | chr17 | 82656949 | 82656955 | 7mer-m8 | 82656948 | 82656970 | 156 | -24.7 |
| ADediting_676033 | chr17_82656975_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-4252 | chr17 | 82656970 | 82656977 | 8mer-1a | 82656970 | 82656989 | 148 | -20.71 |
| ADediting_676034 | chr17_82656978_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-25-3p | chr17 | 82656974 | 82656980 | 7mer-m8 | 82656973 | 82656995 | 154 | -22.52 |
| ADediting_676034 | chr17_82656978_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-32-5p | chr17 | 82656974 | 82656980 | 7mer-m8 | 82656973 | 82656994 | 150 | -16.24 |
| ADediting_676034 | chr17_82656978_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-363-3p | chr17 | 82656974 | 82656980 | 7mer-m8 | 82656973 | 82656994 | 151 | -16.84 |
| ADediting_676034 | chr17_82656978_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-367-3p | chr17 | 82656974 | 82656980 | 7mer-m8 | 82656973 | 82656993 | 157 | -19.54 |
| ADediting_676034 | chr17_82656978_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-7703 | chr17 | 82656975 | 82656982 | 8mer-1a | 82656975 | 82656997 | 154 | -19.46 |
| ADediting_676034 | chr17_82656978_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-92a-3p | chr17 | 82656974 | 82656980 | 7mer-m8 | 82656973 | 82656995 | 158 | -23.66 |
| ADediting_676034 | chr17_82656978_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-92b-3p | chr17 | 82656974 | 82656980 | 7mer-m8 | 82656973 | 82656995 | 162 | -24.14 |
| ADediting_676035 | chr17_82657009_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-340-3p | chr17 | 82657007 | 82657014 | 8mer-1a | 82657007 | 82657027 | 150 | -19.15 |
| ADediting_676035 | chr17_82657009_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6827-3p | chr17 | 82657007 | 82657014 | 8mer-1a | 82657007 | 82657027 | 140 | -14.67 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1550117 | chr17_82656143_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-193b-5p | chr17 | 82656138 | 82656144 | 7mer-m8 | 82656137 | 82656163 | 145 | -26.74 |
| ADediting_675999 | chr17_82656034_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6747-3p | chr17 | 82656032 | 82656038 | 7mer-m8 | 82656031 | 82656051 | 151 | -23.23 |
| ADediting_675999 | chr17_82656034_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6752-3p | chr17 | 82656031 | 82656037 | 7mer-m8 | 82656030 | 82656051 | 152 | -25.45 |
| ADediting_675999 | chr17_82656034_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6836-3p | chr17 | 82656034 | 82656040 | 7mer-m8 | 82656033 | 82656053 | 145 | -18.78 |
| ADediting_676000 | chr17_82656081_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-5089-5p | chr17 | 82656081 | 82656087 | 7mer-m8 | 82656080 | 82656099 | 145 | -11.44 |
| ADediting_676000 | chr17_82656081_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6506-5p | chr17 | 82656080 | 82656086 | 7mer-m8 | 82656079 | 82656101 | 144 | -13.68 |
| ADediting_676001 | chr17_82656086_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-10399-5p | chr17 | 82656085 | 82656091 | 7mer-m8 | 82656084 | 82656106 | 145 | -8.45 |
| ADediting_676001 | chr17_82656086_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-5089-5p | chr17 | 82656081 | 82656087 | 7mer-m8 | 82656080 | 82656099 | 145 | -11.44 |
| ADediting_676001 | chr17_82656086_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6504-3p | chr17 | 82656085 | 82656091 | 7mer-m8 | 82656084 | 82656108 | 144 | -11.32 |
| ADediting_676002 | chr17_82656087_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-10399-5p | chr17 | 82656085 | 82656091 | 7mer-m8 | 82656084 | 82656106 | 145 | -8.45 |
| ADediting_676002 | chr17_82656087_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6504-3p | chr17 | 82656085 | 82656091 | 7mer-m8 | 82656084 | 82656108 | 144 | -11.32 |
| ADediting_676003 | chr17_82656100_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-4659a-5p | chr17 | 82656100 | 82656106 | 7mer-m8 | 82656099 | 82656119 | 152 | -21.6 |
| ADediting_676003 | chr17_82656100_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-4659b-5p | chr17 | 82656100 | 82656106 | 7mer-m8 | 82656099 | 82656116 | 152 | -19.26 |
| ADediting_676003 | chr17_82656100_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-4769-3p | chr17 | 82656099 | 82656105 | 7mer-m8 | 82656098 | 82656119 | 143 | -15.31 |
| ADediting_676003 | chr17_82656100_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6817-5p | chr17 | 82656099 | 82656105 | 7mer-m8 | 82656098 | 82656121 | 152 | -15.33 |
| ADediting_676004 | chr17_82656105_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-4659a-5p | chr17 | 82656100 | 82656106 | 7mer-m8 | 82656099 | 82656119 | 152 | -21.6 |
| ADediting_676004 | chr17_82656105_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-4659b-5p | chr17 | 82656100 | 82656106 | 7mer-m8 | 82656099 | 82656116 | 152 | -19.26 |
| ADediting_676004 | chr17_82656105_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6872-3p | chr17 | 82656102 | 82656108 | 7mer-m8 | 82656101 | 82656121 | 140 | -18.06 |
| ADediting_676010 | chr17_82656122_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-4775 | chr17 | 82656122 | 82656128 | 7mer-m8 | 82656121 | 82656144 | 143 | -6.51 |
| ADediting_676011 | chr17_82656127_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-4775 | chr17 | 82656122 | 82656128 | 7mer-m8 | 82656121 | 82656144 | 143 | -6.51 |
| ADediting_676011 | chr17_82656127_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-590-3p | chr17 | 82656122 | 82656129 | 8mer-1a | 82656122 | 82656141 | 151 | -5.69 |
| ADediting_676013 | chr17_82656142_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-193b-5p | chr17 | 82656138 | 82656144 | 7mer-m8 | 82656137 | 82656163 | 145 | -26.74 |
| ADediting_676015 | chr17_82656152_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-1306-3p | chr17 | 82656150 | 82656156 | 7mer-m8 | 82656149 | 82656169 | 149 | -22.85 |
| ADediting_676016 | chr17_82656165_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-3663-5p | chr17 | 82656161 | 82656167 | 7mer-m8 | 82656160 | 82656176 | 141 | -17.54 |
| ADediting_676019 | chr17_82656205_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-3616-5p | chr17 | 82656205 | 82656211 | 7mer-m8 | 82656204 | 82656225 | 151 | -11.9 |
| ADediting_676020 | chr17_82656218_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-10399-5p | chr17 | 82656217 | 82656223 | 7mer-m8 | 82656216 | 82656237 | 148 | -10.64 |
| ADediting_676020 | chr17_82656218_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-5089-5p | chr17 | 82656213 | 82656219 | 7mer-m8 | 82656212 | 82656234 | 148 | -13.62 |
| ADediting_676020 | chr17_82656218_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6504-3p | chr17 | 82656217 | 82656223 | 7mer-m8 | 82656216 | 82656237 | 149 | -14.65 |
| ADediting_676021 | chr17_82656219_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-10399-5p | chr17 | 82656217 | 82656223 | 7mer-m8 | 82656216 | 82656237 | 148 | -10.64 |
| ADediting_676021 | chr17_82656219_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6504-3p | chr17 | 82656217 | 82656223 | 7mer-m8 | 82656216 | 82656237 | 149 | -14.65 |
| ADediting_676022 | chr17_82656225_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-3934-5p | chr17 | 82656221 | 82656227 | 7mer-m8 | 82656220 | 82656241 | 146 | -17.74 |
| ADediting_676022 | chr17_82656225_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-552-3p | chr17 | 82656219 | 82656226 | 8mer-1a | 82656219 | 82656241 | 146 | -15.88 |
| ADediting_676023 | chr17_82656227_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6807-5p | chr17 | 82656227 | 82656233 | 7mer-m8 | 82656226 | 82656247 | 141 | -17.71 |
| ADediting_676024 | chr17_82656770_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-887-5p | chr17 | 82656769 | 82656776 | 8mer-1a | 82656769 | 82656789 | 147 | -14 |
| ADediting_676025 | chr17_82656771_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-30b-3p | chr17 | 82656770 | 82656777 | 8mer-1a | 82656770 | 82656791 | 151 | -15.84 |
| ADediting_676025 | chr17_82656771_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-3689a-3p | chr17 | 82656770 | 82656777 | 8mer-1a | 82656770 | 82656791 | 141 | -19.9 |
| ADediting_676025 | chr17_82656771_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-3689b-3p | chr17 | 82656770 | 82656777 | 8mer-1a | 82656770 | 82656791 | 141 | -19.95 |
| ADediting_676025 | chr17_82656771_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-3689c | chr17 | 82656770 | 82656777 | 8mer-1a | 82656770 | 82656791 | 141 | -19.95 |
| ADediting_676025 | chr17_82656771_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6779-5p | chr17 | 82656770 | 82656777 | 8mer-1a | 82656770 | 82656793 | 151 | -24.22 |
| ADediting_676025 | chr17_82656771_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-887-5p | chr17 | 82656769 | 82656776 | 8mer-1a | 82656769 | 82656789 | 147 | -14 |
| ADediting_676026 | chr17_82656784_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6748-5p | chr17 | 82656783 | 82656789 | 7mer-m8 | 82656782 | 82656802 | 149 | -22.28 |
| ADediting_676026 | chr17_82656784_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6769a-5p | chr17 | 82656782 | 82656788 | 7mer-m8 | 82656781 | 82656799 | 143 | -22.76 |
| ADediting_676026 | chr17_82656784_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6769b-5p | chr17 | 82656782 | 82656788 | 7mer-m8 | 82656781 | 82656804 | 152 | -26.81 |
| ADediting_676027 | chr17_82656848_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-3675-3p | chr17 | 82656843 | 82656849 | 7mer-m8 | 82656842 | 82656863 | 145 | -12.58 |
| ADediting_676029 | chr17_82656892_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-3686 | chr17 | 82656888 | 82656894 | 7mer-m8 | 82656887 | 82656908 | 140 | -9.59 |
| ADediting_676030 | chr17_82656902_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-5690 | chr17 | 82656898 | 82656904 | 7mer-m8 | 82656897 | 82656917 | 145 | -16.75 |
| ADediting_676031 | chr17_82656951_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-377-5p | chr17 | 82656947 | 82656953 | 7mer-m8 | 82656946 | 82656963 | 149 | -21.43 |
| ADediting_676031 | chr17_82656951_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6086 | chr17 | 82656947 | 82656953 | 7mer-m8 | 82656946 | 82656965 | 152 | -24.9 |
| ADediting_676032 | chr17_82656954_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-7855-5p | chr17 | 82656954 | 82656960 | 7mer-m8 | 82656953 | 82656970 | 146 | -21.42 |
| ADediting_676035 | chr17_82657009_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-6888-3p | chr17 | 82657007 | 82657013 | 7mer-m8 | 82657006 | 82657026 | 151 | -15.45 |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_676024 | chr17_82656770_- | ENSG00000141542.11 | ENST00000571880.1 | RAB40B-205 | hsa-miR-3192-5p | chr17 | 82656769 | 82656776 | 8mer-1a | 82656769 | 82656788 | 156 | -25.88 |
| ADediting_676024 | chr17_82656770_- | ENSG00000141542.11 | ENST00000571880.1 | RAB40B-205 | hsa-miR-326 | chr17 | 82656768 | 82656774 | 7mer-m8 | 82656767 | 82656786 | 140 | -14.14 |
| ADediting_676024 | chr17_82656770_- | ENSG00000141542.11 | ENST00000571880.1 | RAB40B-205 | hsa-miR-330-5p | chr17 | 82656768 | 82656774 | 7mer-m8 | 82656767 | 82656788 | 140 | -21.34 |
| ADediting_676024 | chr17_82656770_- | ENSG00000141542.11 | ENST00000571880.1 | RAB40B-205 | hsa-miR-4314 | chr17 | 82656769 | 82656775 | 7mer-m8 | 82656768 | 82656785 | 140 | -18.8 |
| ADediting_676024 | chr17_82656770_- | ENSG00000141542.11 | ENST00000571880.1 | RAB40B-205 | hsa-miR-514a-5p | chr17 | 82656767 | 82656773 | 7mer-m8 | 82656766 | 82656786 | 154 | -19.44 |
| ADediting_676025 | chr17_82656771_- | ENSG00000141542.11 | ENST00000571880.1 | RAB40B-205 | hsa-miR-6771-5p | chr17 | 82656769 | 82656776 | 8mer-1a | 82656769 | 82656790 | 159 | -26.64 |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_676024 | chr17_82656770_- | ENSG00000141542.11 | ENST00000571880.1 | RAB40B-205 | hsa-miR-887-5p | chr17 | 82656769 | 82656776 | 8mer-1a | 82656769 | 82656789 | 147 | -14 |
| ADediting_676025 | chr17_82656771_- | ENSG00000141542.11 | ENST00000571880.1 | RAB40B-205 | hsa-miR-30b-3p | chr17 | 82656770 | 82656777 | 8mer-1a | 82656770 | 82656791 | 151 | -15.84 |
| ADediting_676025 | chr17_82656771_- | ENSG00000141542.11 | ENST00000571880.1 | RAB40B-205 | hsa-miR-3689a-3p | chr17 | 82656770 | 82656777 | 8mer-1a | 82656770 | 82656791 | 141 | -19.9 |
| ADediting_676025 | chr17_82656771_- | ENSG00000141542.11 | ENST00000571880.1 | RAB40B-205 | hsa-miR-3689b-3p | chr17 | 82656770 | 82656777 | 8mer-1a | 82656770 | 82656791 | 141 | -19.95 |
| ADediting_676025 | chr17_82656771_- | ENSG00000141542.11 | ENST00000571880.1 | RAB40B-205 | hsa-miR-3689c | chr17 | 82656770 | 82656777 | 8mer-1a | 82656770 | 82656791 | 141 | -19.95 |
| ADediting_676025 | chr17_82656771_- | ENSG00000141542.11 | ENST00000571880.1 | RAB40B-205 | hsa-miR-6779-5p | chr17 | 82656770 | 82656777 | 8mer-1a | 82656770 | 82656793 | 151 | -24.22 |
| ADediting_676025 | chr17_82656771_- | ENSG00000141542.11 | ENST00000571880.1 | RAB40B-205 | hsa-miR-887-5p | chr17 | 82656769 | 82656776 | 8mer-1a | 82656769 | 82656789 | 147 | -14 |
| ADediting_676026 | chr17_82656784_- | ENSG00000141542.11 | ENST00000571880.1 | RAB40B-205 | hsa-miR-6748-5p | chr17 | 82656783 | 82656789 | 7mer-m8 | 82656782 | 82656802 | 149 | -22.28 |
| ADediting_676026 | chr17_82656784_- | ENSG00000141542.11 | ENST00000571880.1 | RAB40B-205 | hsa-miR-6769a-5p | chr17 | 82656782 | 82656788 | 7mer-m8 | 82656781 | 82656799 | 143 | -22.76 |
| ADediting_676026 | chr17_82656784_- | ENSG00000141542.11 | ENST00000571880.1 | RAB40B-205 | hsa-miR-6769b-5p | chr17 | 82656782 | 82656788 | 7mer-m8 | 82656781 | 82656804 | 152 | -26.81 |
| ADediting_676027 | chr17_82656848_- | ENSG00000141542.11 | ENST00000571880.1 | RAB40B-205 | hsa-miR-3675-3p | chr17 | 82656843 | 82656849 | 7mer-m8 | 82656842 | 82656863 | 145 | -12.58 |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-381-3p | chr17 | 82655478 | 82655484 | 7mer-m8 | 82655477 | 82655501 | 141 | -14.07 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-381-3p | chr17 | 82655911 | 82655917 | 7mer-m8 | 82655910 | 82655931 | 140 | -18.65 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-641 | chr17 | 82655436 | 82655442 | 7mer-m8 | 82655435 | 82655459 | 151 | -13.33 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-641 | chr17 | 82655412 | 82655419 | 8mer-1a | 82655412 | 82655435 | 150 | -18.78 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1471003 | chr9_63819626_+ | ENSG00000141542.11 | ENST00000269347.10 | RAB40B-201 | hsa-miR-4477b | chr17 | 82657558 | 82657565 | 8mer-1a | 82657558 | 82657581 | 145 | -8.55 |
| ADediting_1471003 | chr9_63819626_+ | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-4477b | chr17 | 82657558 | 82657565 | 8mer-1a | 82657558 | 82657581 | 145 | -8.55 |
| ADediting_1471004 | chr9_63819627_+ | ENSG00000141542.11 | ENST00000269347.10 | RAB40B-201 | hsa-miR-4477b | chr17 | 82657558 | 82657565 | 8mer-1a | 82657558 | 82657581 | 145 | -8.55 |
| ADediting_1471004 | chr9_63819627_+ | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-4477b | chr17 | 82657558 | 82657565 | 8mer-1a | 82657558 | 82657581 | 145 | -8.55 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000141542.11 | ENST00000571995.6 | RAB40B-206 | hsa-miR-4775 | chr17 | 82656122 | 82656128 | 7mer-m8 | 82656121 | 82656144 | 143 | -6.51 |
| Differentially expressed gene-miRNA network |
Top |
The effects of the RNA editing to the stability of the RNA structures for RAB40B |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000571880.1 | lncRNA |  |  |
| ENST00000571995.6 | protein_coding |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_675998 | ENST00000571995.6 | chr17_82656025_- | 2777 | -1565.20 | -1560.50 | -1628.10 |
| ADediting_675999 | ENST00000571995.6 | chr17_82656034_- | 2768 | -1566.70 | -1560.50 | -1628.10 |
| ADediting_676000 | ENST00000571995.6 | chr17_82656081_- | 2721 | -1559.80 | -1560.50 | -1628.10 |
| ADediting_676001 | ENST00000571995.6 | chr17_82656086_- | 2716 | -1560.50 | -1560.50 | -1628.10 |
| ADediting_676002 | ENST00000571995.6 | chr17_82656087_- | 2715 | -1560.60 | -1560.50 | -1628.10 |
| ADediting_676003 | ENST00000571995.6 | chr17_82656100_- | 2702 | -1565.20 | -1560.50 | -1628.10 |
| ADediting_676004 | ENST00000571995.6 | chr17_82656105_- | 2697 | -1566.30 | -1560.50 | -1628.10 |
| ADediting_676005 | ENST00000571995.6 | chr17_82656116_- | 2686 | -1560.50 | -1560.50 | -1628.10 |
| ADediting_676006 | ENST00000571995.6 | chr17_82656117_- | 2685 | -1560.60 | -1560.50 | -1628.10 |
| ADediting_676007 | ENST00000571995.6 | chr17_82656118_- | 2684 | -1560.60 | -1560.50 | -1628.10 |
| ADediting_676008 | ENST00000571995.6 | chr17_82656119_- | 2683 | -1560.60 | -1560.50 | -1628.10 |
| ADediting_676009 | ENST00000571995.6 | chr17_82656120_- | 2682 | -1560.20 | -1560.50 | -1628.10 |
| ADediting_676010 | ENST00000571995.6 | chr17_82656122_- | 2680 | -1560.50 | -1560.50 | -1628.10 |
| ADediting_676011 | ENST00000571995.6 | chr17_82656127_- | 2675 | -1560.60 | -1560.50 | -1628.10 |
| ADediting_676012 | ENST00000571995.6 | chr17_82656131_- | 2671 | -1560.20 | -1560.50 | -1628.10 |
| ADediting_676013 | ENST00000571995.6 | chr17_82656142_- | 2660 | -1560.50 | -1560.50 | -1628.10 |
| ADediting_1550117 | ENST00000571995.6 | chr17_82656143_- | 2659 | -1560.60 | -1560.50 | -1628.10 |
| ADediting_676014 | ENST00000571995.6 | chr17_82656147_- | 2655 | -1567.20 | -1560.50 | -1628.10 |
| ADediting_676015 | ENST00000571995.6 | chr17_82656152_- | 2650 | -1560.50 | -1560.50 | -1628.10 |
| ADediting_676016 | ENST00000571995.6 | chr17_82656165_- | 2637 | -1560.80 | -1560.50 | -1628.10 |
| ADediting_676017 | ENST00000571995.6 | chr17_82656167_- | 2635 | -1560.20 | -1560.50 | -1628.10 |
| ADediting_676018 | ENST00000571995.6 | chr17_82656176_- | 2626 | -1560.50 | -1560.50 | -1628.10 |
| ADediting_676019 | ENST00000571995.6 | chr17_82656205_- | 2597 | -1564.10 | -1560.50 | -1628.10 |
| ADediting_676020 | ENST00000571995.6 | chr17_82656218_- | 2584 | -1560.50 | -1560.50 | -1628.10 |
| ADediting_676021 | ENST00000571995.6 | chr17_82656219_- | 2583 | -1560.60 | -1560.50 | -1628.10 |
| ADediting_676022 | ENST00000571995.6 | chr17_82656225_- | 2577 | -1565.90 | -1560.50 | -1628.10 |
| ADediting_676023 | ENST00000571995.6 | chr17_82656227_- | 2575 | -1560.10 | -1560.50 | -1628.10 |
| ADediting_676024 | ENST00000571995.6 | chr17_82656770_- | 2032 | -1560.50 | -1560.50 | -1628.10 |
| ADediting_676025 | ENST00000571995.6 | chr17_82656771_- | 2031 | -1563.90 | -1560.50 | -1628.10 |
| ADediting_676026 | ENST00000571995.6 | chr17_82656784_- | 2018 | -1564.40 | -1560.50 | -1628.10 |
| ADediting_676027 | ENST00000571995.6 | chr17_82656848_- | 1954 | -1560.20 | -1560.50 | -1628.10 |
| ADediting_676028 | ENST00000571995.6 | chr17_82656879_- | 1923 | -1564.40 | -1560.50 | -1628.10 |
| ADediting_676029 | ENST00000571995.6 | chr17_82656892_- | 1910 | -1560.50 | -1560.50 | -1628.10 |
| ADediting_676030 | ENST00000571995.6 | chr17_82656902_- | 1900 | -1560.20 | -1560.50 | -1628.10 |
| ADediting_676031 | ENST00000571995.6 | chr17_82656951_- | 1851 | -1560.50 | -1560.50 | -1628.10 |
| ADediting_676032 | ENST00000571995.6 | chr17_82656954_- | 1848 | -1564.40 | -1560.50 | -1628.10 |
| ADediting_676033 | ENST00000571995.6 | chr17_82656975_- | 1827 | -1566.70 | -1560.50 | -1628.10 |
| ADediting_676034 | ENST00000571995.6 | chr17_82656978_- | 1824 | -1567.20 | -1560.50 | -1628.10 |
| ADediting_676035 | ENST00000571995.6 | chr17_82657009_- | 1793 | -1564.30 | -1560.50 | -1628.10 |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_676024 | ENST00000571880.1 | chr17_82656770_- | 112 | -338.20 | -335.50 | -339.40 |
| ADediting_676025 | ENST00000571880.1 | chr17_82656771_- | 111 | -334.80 | -335.50 | -339.40 |
| ADediting_676026 | ENST00000571880.1 | chr17_82656784_- | 98 | -337.40 | -335.50 | -339.40 |
| ADediting_676027 | ENST00000571880.1 | chr17_82656848_- | 34 | -336.30 | -335.50 | -339.40 |
| ADediting_676028 | ENST00000571880.1 | chr17_82656879_- | 3 | -335.50 | -335.50 | -339.40 |
Top |
Relation with ADAR for RAB40B |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| CER | ADediting_676013 | chr17_82656142_- | 0.0739302888454927 | 0.146349192474629 | 0.000126698550800508 | 0.307884810305471 | 0.519423364569356 | 0.0530079652386019 |
| CER | ADediting_676022 | chr17_82656225_- | 0.23834656413636 | 0.0968592503642084 | 2.53368695960972e-06 | 0.373333543158097 | 0.0305976468097412 | 0.176635348145195 |
| CER | ADediting_676030 | chr17_82656902_- | 0.276694675431627 | 0.089386251272635 | 7.00548040227634e-05 | 0.318801685301793 | 0.176918610448555 | 0.110839020787427 |
| DLPFC | ADediting_676058 | chr17_82669639_- | 0.586906189166368 | 0.03097650628473 | 0.616584706240473 | -0.0285471797610075 | 1.30746232512116e-10 | 0.354500009747928 |
| DLPFC | ADediting_676090 | chr17_82680982_- | 0.0504637116287092 | 0.111198483243825 | 0.8972682026104 | 0.0073627724370032 | 3.49770139184259e-08 | 0.306854087504407 |
| DLPFC | ADediting_676091 | chr17_82682955_- | 0.377331041530279 | 0.0503125559979246 | 0.766917446855052 | -0.0169019999980038 | 1.46702824143137e-08 | 0.314824660964904 |
| DLPFC | ADediting_676095 | chr17_82684857_- | 0.717633761620972 | -0.0206199227828768 | 0.0104582413846845 | -0.145230109065119 | 2.64684592903968e-09 | 0.329880782870048 |
| DLPFC | ADediting_676103 | chr17_82685100_- | 0.84549001754661 | 0.0111127645596684 | 0.0353332719126414 | -0.119582458395381 | 2.09915162394519e-09 | 0.331857225271976 |
| DLPFC | ADediting_676104 | chr17_82685108_- | 0.0427162148222336 | 0.115177985289059 | 0.497044593599812 | -0.0387149044185315 | 1.28452010486973e-24 | 0.537613294117203 |
| TCX | ADediting_676115 | chr17_82687880_- | 0.552908998356373 | -0.0488310318753318 | 0.00259851981941498 | -0.244207042457837 | 2.5184475148708e-05 | 0.336718319393567 |
| DLPFC | ADediting_676128 | chr17_82688358_- | 0.160924504500426 | 0.0798218431435469 | 0.28140647228669 | -0.0613691069857315 | 8.5592669971493e-21 | 0.497560119455113 |
| DLPFC | ADediting_676129 | chr17_82688370_- | 0.19534374303683 | 0.0737449189673454 | 0.508702705231002 | -0.0376731358183343 | 1.11563623573218e-13 | 0.405200905495329 |
| DLPFC | ADediting_676131 | chr17_82688851_- | 0.961936078011277 | 0.00272153957814033 | 0.19466106354966 | -0.0738574454086858 | 3.08040408578412e-10 | 0.347701857899221 |
| TCX | ADediting_676159 | chr17_82693866_- | 0.745058483855065 | 0.026768536772904 | 0.00262468779717048 | -0.243967771001873 | 6.39497014545041e-08 | 0.42404484160034 |
| TCX | ADediting_676165 | chr17_82694319_- | 0.0704477061333617 | -0.148129180932439 | 0.000139954951445498 | -0.306009119836151 | 3.92920371971935e-05 | 0.329065544889923 |
| TCX | ADediting_676169 | chr17_82694383_- | 0.136246509528272 | -0.12221695249238 | 0.000598744846122961 | -0.27704803109475 | 2.76977955723115e-07 | 0.404837892021612 |
| DLPFC | ADediting_676219 | chr17_82696007_- | 0.0176333393480802 | 0.134719545202529 | 0.307665107095886 | 0.0581255078721814 | 2.20310085466468e-08 | 0.311123831206083 |
| DLPFC | ADediting_676222 | chr17_82696034_- | 0.0204586450542345 | 0.131602400919495 | 0.742541247371342 | 0.018731006788536 | 5.69832724125004e-16 | 0.438117558338283 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 7.72884963666503e-38 | 0.644881432704363 | 1.39439302812321e-34 | 0.62198908956386 | 6.55760309032854e-24 | 0.530586275407215 |
| AC | 2.52098518810833e-77 | 0.867909141419199 | 5.87778843217078e-83 | 0.881895574774202 | 2.35612931127755e-06 | 0.293405734226716 |
| PCC | 3.13477050275957e-30 | 0.70683120958652 | 6.12580981089675e-30 | 0.704321542589062 | 0.00186221839511922 | 0.223738487243239 |
| CER | 1.55985478780932e-05 | 0.344740805990981 | 1.22764435344059e-07 | 0.415647136567089 | 0.00439228458036889 | 0.231352240557726 |
| TCX | 2.50601184291295e-08 | 0.43572173746229 | 0.509587214769423 | 0.0542605902656139 | 8.33190830675395e-13 | 0.541538846242057 |
| FP | 3.13726595231596e-08 | 0.400121434713984 | 0.00095753757743371 | 0.245479521452333 | 9.57791635067589e-10 | 0.438133624490357 |
| IFG | 0.0183188928528502 | 0.467971699487066 | 0.149961634261691 | 0.29659213196031 | 0.0124222466692011 | 0.492301923243986 |
| PG | 8.47576097656253e-10 | 0.430670655711611 | 4.45286400867967e-06 | 0.329273347006062 | 3.20283424350651e-08 | 0.391790402199619 |
| STG | 1.37369580964147e-11 | 0.655102298857688 | 0.000366041717371959 | 0.379815724247326 | 0.000455777630790182 | 0.374097703556917 |
Top |
Relation with AD stages for RAB40B |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| CER | ADediting_676022 | chr17_82656225_- | 0.000848414648374945 | 0.316444654691493 |
| TCX | ADediting_676022 | chr17_82656225_- | 0.00162863959705994 | 0.302412596457938 |
| TCX | ADediting_676158 | chr17_82693838_- | 0.000428296020481338 | -0.336066254951665 |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
Top |
RelatedDrugs for RAB40B |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for RAB40B |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
| RAB40B | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
|