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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited versus non-edited samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with AD stages

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene


Gene summary for TCERG1

check button Gene summary
Gene informationGene symbol

TCERG1

Gene ID

10915

Gene nametranscription elongation regulator 1
SynonymsCA150|TAF2S|Urn1
Cytomap

5q32

Type of geneprotein-coding
Descriptiontranscription elongation regulator 1TATA box binding protein (TBP)-associated factor, RNA polymerase II, S, 150kDTATA box-binding protein-associated factor 2Sco-activator of 150 kDatranscription factor CA150
Modification date20200313
UniProtAcc

O14776,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
TCERG1

GO:0000122

negative regulation of transcription by RNA polymerase II

20956529


Top

RNA A-to-I events for TCERG1

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_1178546(146452653, +), ADediting_1178547(146452654, +), ADediting_1178548(146452664, +), ADediting_1178549(146452669, +), ADediting_1178550(146452670, +), ADediting_1178551(146452683, +), ADediting_1178552(146452716, +), ADediting_1178553(146452719, +), ADediting_1178554(146452729, +), ADediting_1178555(146452731, +), ADediting_1178556(146453940, +), ADediting_1178557(146453994, +), ADediting_1178558(146454064, +), ADediting_1178559(146454090, +), ADediting_1178560(146454122, +), ADediting_1178561(146454678, +), ADediting_1178562(146454772, +), ADediting_1178563(146485749, +), ADediting_1178564(146485763, +), ADediting_1178565(146485795, +), ADediting_1178566(146485799, +), ADediting_1178567(146485807, +), ADediting_1178568(146485812, +), ADediting_1178569(146485820, +), ADediting_1178570(146485821, +), ADediting_1178571(146485824, +), ADediting_1178572(146485837, +), ADediting_1178573(146485847, +), ADediting_1178574(146485860, +), ADediting_1178575(146485861, +), ADediting_1178576(146485875, +), ADediting_1178577(146485878, +), ADediting_1178578(146485892, +), ADediting_1178579(146485917, +), ADediting_1178580(146485930, +), ADediting_1178581(146485933, +), ADediting_1178582(146485934, +), ADediting_1178583(146485955, +), ADediting_1178584(146485956, +), ADediting_1178585(146485957, +), ADediting_1178586(146485969, +), ADediting_1178587(146486819, +), ADediting_1178588(146486820, +), ADediting_1178589(146486825, +), ADediting_1178590(146486833, +), ADediting_1178591(146486836, +), ADediting_1178592(146486842, +), ADediting_1178593(146486855, +), ADediting_1178594(146486868, +), ADediting_1178595(146486889, +), ADediting_1178596(146486928, +), ADediting_1178597(146486930, +), ADediting_1178598(146486931, +), ADediting_1178599(146486932, +), ADediting_1178600(146486937, +), ADediting_1178601(146486939, +), ADediting_1178602(146486940, +), ADediting_1178603(146486943, +), ADediting_1178604(146486947, +), ADediting_1178605(146486983, +), ADediting_1178606(146486998, +), ADediting_1178607(146487473, +), ADediting_1178608(146487474, +), ADediting_1178609(146487505, +), ADediting_1178610(146487518, +), ADediting_1178611(146487574, +), ADediting_1178612(146487575, +), ADediting_1178613(146487582, +), ADediting_1178614(146487592, +), ADediting_1178615(146487620, +), ADediting_1178616(146487624, +), ADediting_1178617(146487636, +), ADediting_1178618(146487637, +), ADediting_1178619(146487650, +), ADediting_1178620(146487673, +), ADediting_1178621(146487707, +), ADediting_1178622(146487717, +), ADediting_1178623(146495900, +), ADediting_1178624(146495975, +), ADediting_1178625(146495976, +), ADediting_1178626(146495982, +), ADediting_1178627(146496010, +), ADediting_1178628(146496032, +), ADediting_1178629(146496038, +), ADediting_1178630(146496042, +), ADediting_1178631(146496101, +), ADediting_1178632(146496794, +), ADediting_1178633(146496943, +), ADediting_1178634(146496997, +), ADediting_1178635(146497007, +), ADediting_1178636(146497029, +), ADediting_1178637(146497034, +), ADediting_1178638(146497051, +), ADediting_1178639(146497054, +), ADediting_1178640(146497060, +), ADediting_1178641(146497066, +), ADediting_1178642(146497068, +), ADediting_1178643(146497101, +), ADediting_1178644(146497234, +), ADediting_1178645(146497248, +), ADediting_1178646(146497300, +), ADediting_1178647(146500757, +), ADediting_1178648(146500765, +), ADediting_1178649(146500766, +), ADediting_1178650(146500816, +), ADediting_1178651(146500825, +), ADediting_1178652(146500828, +), ADediting_1178653(146500855, +), ADediting_1178654(146500856, +), ADediting_1178655(146500858, +), ADediting_1178656(146500871, +), ADediting_1178657(146500887, +), ADediting_1178658(146500897, +), ADediting_1178659(146500905, +), ADediting_1178660(146500912, +), ADediting_1178661(146500917, +), ADediting_1178662(146500928, +), ADediting_1178663(146500990, +), ADediting_1178664(146501951, +), ADediting_1178665(146501998, +), ADediting_1178666(146502024, +), ADediting_1178667(146502036, +), ADediting_1178668(146502082, +), ADediting_1178669(146502093, +), ADediting_1178670(146504925, +), ADediting_1178671(146505906, +), ADediting_1579696(146486996, +), ADediting_1579697(146487019, +), ADediting_1579698(146495877, +), ADediting_1579699(146495966, +), ADediting_1579700(146496837, +), ADediting_1579701(146497146, +), ADediting_1579702(146497272, +), ADediting_1579703(146497278, +), ADediting_1579704(146497297, +), ADediting_1579705(146497310, +), ADediting_1579706(146497394, +), ADediting_1579707(146497439, +), ADediting_1579708(146500837, +), ADediting_1579709(146501994, +), ADediting_1579710(146502021, +), ADediting_1655351(146496074, +),

Top

RNA editing positional annotations for TCERG1 using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_1178546chr5_146452653_+intronic
ADediting_1178547chr5_146452654_+intronic
ADediting_1178548chr5_146452664_+intronic
ADediting_1178549chr5_146452669_+intronic
ADediting_1178550chr5_146452670_+intronic
ADediting_1178551chr5_146452683_+intronic
ADediting_1178552chr5_146452716_+intronic
ADediting_1178553chr5_146452719_+intronic
ADediting_1178554chr5_146452729_+intronic
ADediting_1178555chr5_146452731_+intronic
ADediting_1178556chr5_146453940_+intronic
ADediting_1178557chr5_146453994_+intronic
ADediting_1178558chr5_146454064_+intronic
ADediting_1178559chr5_146454090_+intronic
ADediting_1178560chr5_146454122_+intronic
ADediting_1178561chr5_146454678_+intronic
ADediting_1178562chr5_146454772_+intronic
ADediting_1178563chr5_146485749_+intronic
ADediting_1178564chr5_146485763_+intronic
ADediting_1178565chr5_146485795_+intronic
ADediting_1178566chr5_146485799_+intronic
ADediting_1178567chr5_146485807_+intronic
ADediting_1178568chr5_146485812_+intronic
ADediting_1178569chr5_146485820_+intronic
ADediting_1178570chr5_146485821_+intronic
ADediting_1178571chr5_146485824_+intronic
ADediting_1178572chr5_146485837_+intronic
ADediting_1178573chr5_146485847_+intronic
ADediting_1178574chr5_146485860_+intronic
ADediting_1178575chr5_146485861_+intronic
ADediting_1178576chr5_146485875_+intronic
ADediting_1178577chr5_146485878_+intronic
ADediting_1178578chr5_146485892_+intronic
ADediting_1178579chr5_146485917_+intronic
ADediting_1178580chr5_146485930_+intronic
ADediting_1178581chr5_146485933_+intronic
ADediting_1178582chr5_146485934_+intronic
ADediting_1178583chr5_146485955_+intronic
ADediting_1178584chr5_146485956_+intronic
ADediting_1178585chr5_146485957_+intronic
ADediting_1178586chr5_146485969_+intronic
ADediting_1178587chr5_146486819_+intronic
ADediting_1178588chr5_146486820_+intronic
ADediting_1178589chr5_146486825_+intronic
ADediting_1178590chr5_146486833_+intronic
ADediting_1178591chr5_146486836_+intronic
ADediting_1178592chr5_146486842_+intronic
ADediting_1178593chr5_146486855_+intronic
ADediting_1178594chr5_146486868_+intronic
ADediting_1178595chr5_146486889_+intronic
ADediting_1178596chr5_146486928_+intronic
ADediting_1178597chr5_146486930_+intronic
ADediting_1178598chr5_146486931_+intronic
ADediting_1178599chr5_146486932_+intronic
ADediting_1178600chr5_146486937_+intronic
ADediting_1178601chr5_146486939_+intronic
ADediting_1178602chr5_146486940_+intronic
ADediting_1178603chr5_146486943_+intronic
ADediting_1178604chr5_146486947_+intronic
ADediting_1178605chr5_146486983_+intronic
ADediting_1178606chr5_146486998_+intronic
ADediting_1178607chr5_146487473_+intronic
ADediting_1178608chr5_146487474_+intronic
ADediting_1178609chr5_146487505_+intronic
ADediting_1178610chr5_146487518_+intronic
ADediting_1178611chr5_146487574_+intronic
ADediting_1178612chr5_146487575_+intronic
ADediting_1178613chr5_146487582_+intronic
ADediting_1178614chr5_146487592_+intronic
ADediting_1178615chr5_146487620_+intronic
ADediting_1178616chr5_146487624_+intronic
ADediting_1178617chr5_146487636_+intronic
ADediting_1178618chr5_146487637_+intronic
ADediting_1178619chr5_146487650_+intronic
ADediting_1178620chr5_146487673_+intronic
ADediting_1178621chr5_146487707_+intronic
ADediting_1178622chr5_146487717_+intronic
ADediting_1178623chr5_146495900_+intronic
ADediting_1178624chr5_146495975_+intronic
ADediting_1178625chr5_146495976_+intronic
ADediting_1178626chr5_146495982_+intronic
ADediting_1178627chr5_146496010_+intronic
ADediting_1178628chr5_146496032_+intronic
ADediting_1178629chr5_146496038_+intronic
ADediting_1178630chr5_146496042_+intronic
ADediting_1178631chr5_146496101_+intronic
ADediting_1178632chr5_146496794_+intronic
ADediting_1178633chr5_146496943_+intronic
ADediting_1178634chr5_146496997_+intronic
ADediting_1178635chr5_146497007_+intronic
ADediting_1178636chr5_146497029_+intronic
ADediting_1178637chr5_146497034_+intronic
ADediting_1178638chr5_146497051_+intronic
ADediting_1178639chr5_146497054_+intronic
ADediting_1178640chr5_146497060_+intronic
ADediting_1178641chr5_146497066_+intronic
ADediting_1178642chr5_146497068_+intronic
ADediting_1178643chr5_146497101_+intronic
ADediting_1178644chr5_146497234_+intronic
ADediting_1178645chr5_146497248_+intronic
ADediting_1178646chr5_146497300_+intronic
ADediting_1178647chr5_146500757_+intronic
ADediting_1178648chr5_146500765_+intronic
ADediting_1178649chr5_146500766_+intronic
ADediting_1178650chr5_146500816_+intronic
ADediting_1178651chr5_146500825_+intronic
ADediting_1178652chr5_146500828_+intronic
ADediting_1178653chr5_146500855_+intronic
ADediting_1178654chr5_146500856_+intronic
ADediting_1178655chr5_146500858_+intronic
ADediting_1178656chr5_146500871_+intronic
ADediting_1178657chr5_146500887_+intronic
ADediting_1178658chr5_146500897_+intronic
ADediting_1178659chr5_146500905_+intronic
ADediting_1178660chr5_146500912_+intronic
ADediting_1178661chr5_146500917_+intronic
ADediting_1178662chr5_146500928_+intronic
ADediting_1178663chr5_146500990_+intronic
ADediting_1178664chr5_146501951_+intronic
ADediting_1178665chr5_146501998_+intronic
ADediting_1178666chr5_146502024_+intronic
ADediting_1178667chr5_146502036_+intronic
ADediting_1178668chr5_146502082_+intronic
ADediting_1178669chr5_146502093_+intronic
ADediting_1178670chr5_146504925_+intronic
ADediting_1178671chr5_146505906_+intronic
ADediting_1579696chr5_146486996_+intronic
ADediting_1579697chr5_146487019_+intronic
ADediting_1579698chr5_146495877_+intronic
ADediting_1579699chr5_146495966_+intronic
ADediting_1579700chr5_146496837_+intronic
ADediting_1579701chr5_146497146_+intronic
ADediting_1579702chr5_146497272_+intronic
ADediting_1579703chr5_146497278_+intronic
ADediting_1579704chr5_146497297_+intronic
ADediting_1579705chr5_146497310_+intronic
ADediting_1579706chr5_146497394_+intronic
ADediting_1579707chr5_146497439_+intronic
ADediting_1579708chr5_146500837_+intronic
ADediting_1579709chr5_146501994_+intronic
ADediting_1579710chr5_146502021_+intronic
ADediting_1655351chr5_146496074_+intronic

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_1178546chr5_146452653_+SINEAluName=AluSz
ADediting_1178547chr5_146452654_+SINEAluName=AluSz
ADediting_1178548chr5_146452664_+SINEAluName=AluSz
ADediting_1178549chr5_146452669_+SINEAluName=AluSz
ADediting_1178550chr5_146452670_+SINEAluName=AluSz
ADediting_1178551chr5_146452683_+SINEAluName=AluSz
ADediting_1178552chr5_146452716_+SINEAluName=AluSz
ADediting_1178553chr5_146452719_+SINEAluName=AluSz
ADediting_1178554chr5_146452729_+SINEAluName=AluSz
ADediting_1178555chr5_146452731_+SINEAluName=AluSz
ADediting_1178556chr5_146453940_+SINEAluName=AluSc
ADediting_1178557chr5_146453994_+SINEAluName=AluSc
ADediting_1178558chr5_146454064_+SINEAluName=AluSc
ADediting_1178559chr5_146454090_+SINEAluName=AluSc
ADediting_1178560chr5_146454122_+SINEAluName=AluSc
ADediting_1178561chr5_146454678_+SINEAluName=AluSx
ADediting_1178562chr5_146454772_+SINEAluName=AluSx
ADediting_1178563chr5_146485749_+SINEAluName=AluSz
ADediting_1178564chr5_146485763_+SINEAluName=AluSz
ADediting_1178565chr5_146485795_+SINEAluName=AluSz
ADediting_1178566chr5_146485799_+SINEAluName=AluSz
ADediting_1178567chr5_146485807_+SINEAluName=AluSz
ADediting_1178568chr5_146485812_+SINEAluName=AluSz
ADediting_1178569chr5_146485820_+SINEAluName=AluSz
ADediting_1178570chr5_146485821_+SINEAluName=AluSz
ADediting_1178571chr5_146485824_+SINEAluName=AluSz
ADediting_1178572chr5_146485837_+SINEAluName=AluSz
ADediting_1178573chr5_146485847_+SINEAluName=AluSz
ADediting_1178574chr5_146485860_+SINEAluName=AluSz
ADediting_1178575chr5_146485861_+SINEAluName=AluSz
ADediting_1178576chr5_146485875_+SINEAluName=AluSz
ADediting_1178577chr5_146485878_+SINEAluName=AluSz
ADediting_1178578chr5_146485892_+SINEAluName=AluSz
ADediting_1178579chr5_146485917_+SINEAluName=AluSz
ADediting_1178580chr5_146485930_+SINEAluName=AluSz
ADediting_1178581chr5_146485933_+SINEAluName=AluSz
ADediting_1178582chr5_146485934_+SINEAluName=AluSz
ADediting_1178583chr5_146485955_+SINEAluName=AluSz
ADediting_1178584chr5_146485956_+SINEAluName=AluSz
ADediting_1178585chr5_146485957_+SINEAluName=AluSz
ADediting_1178586chr5_146485969_+SINEAluName=AluSz
ADediting_1178587chr5_146486819_+SINEAluName=AluSz6
ADediting_1178588chr5_146486820_+SINEAluName=AluSz6
ADediting_1178589chr5_146486825_+SINEAluName=AluSz6
ADediting_1178590chr5_146486833_+SINEAluName=AluSz6
ADediting_1178591chr5_146486836_+SINEAluName=AluSz6
ADediting_1178592chr5_146486842_+SINEAluName=AluSz6
ADediting_1178593chr5_146486855_+SINEAluName=AluSz6
ADediting_1178594chr5_146486868_+SINEAluName=AluSz6
ADediting_1178595chr5_146486889_+SINEAluName=AluSz6
ADediting_1178596chr5_146486928_+SINEAluName=AluSz6
ADediting_1178597chr5_146486930_+SINEAluName=AluSz6
ADediting_1178598chr5_146486931_+SINEAluName=AluSz6
ADediting_1178599chr5_146486932_+SINEAluName=AluSz6
ADediting_1178600chr5_146486937_+SINEAluName=AluSz6
ADediting_1178601chr5_146486939_+SINEAluName=AluSz6
ADediting_1178602chr5_146486940_+SINEAluName=AluSz6
ADediting_1178603chr5_146486943_+SINEAluName=AluSz6
ADediting_1178604chr5_146486947_+SINEAluName=AluSz6
ADediting_1178605chr5_146486983_+SINEAluName=AluSz6
ADediting_1178606chr5_146486998_+SINEAluName=AluSz6
ADediting_1178607chr5_146487473_+SINEAluName=AluJr4
ADediting_1178608chr5_146487474_+SINEAluName=AluJr4
ADediting_1178609chr5_146487505_+SINEAluName=AluJr4
ADediting_1178610chr5_146487518_+SINEAluName=AluJr4
ADediting_1178611chr5_146487574_+SINEAluName=AluJr4
ADediting_1178612chr5_146487575_+SINEAluName=AluJr4
ADediting_1178613chr5_146487582_+SINEAluName=AluJr4
ADediting_1178614chr5_146487592_+SINEAluName=AluJr4
ADediting_1178615chr5_146487620_+SINEAluName=AluJr4
ADediting_1178616chr5_146487624_+SINEAluName=AluJr4
ADediting_1178617chr5_146487636_+SINEAluName=AluJr4
ADediting_1178618chr5_146487637_+SINEAluName=AluJr4
ADediting_1178619chr5_146487650_+SINEAluName=AluJr4
ADediting_1178620chr5_146487673_+SINEAluName=AluJr4
ADediting_1178621chr5_146487707_+SINEAluName=AluJr4
ADediting_1178622chr5_146487717_+SINEAluName=AluJr4
ADediting_1178623chr5_146495900_+SINEAluName=AluSx4
ADediting_1178624chr5_146495975_+SINEAluName=AluSx4
ADediting_1178625chr5_146495976_+SINEAluName=AluSx4
ADediting_1178626chr5_146495982_+SINEAluName=AluSx4
ADediting_1178627chr5_146496010_+SINEAluName=AluSx4
ADediting_1178628chr5_146496032_+SINEAluName=AluSx4
ADediting_1178629chr5_146496038_+SINEAluName=AluSx4
ADediting_1178630chr5_146496042_+SINEAluName=AluSx4
ADediting_1178631chr5_146496101_+SINEAluName=AluSx4
ADediting_1178632chr5_146496794_+SINEAluName=AluJo
ADediting_1178633chr5_146496943_+SINEAluName=AluSx1
ADediting_1178634chr5_146496997_+SINEAluName=AluSx1
ADediting_1178635chr5_146497007_+SINEAluName=AluSx1
ADediting_1178636chr5_146497029_+SINEAluName=AluSx1
ADediting_1178637chr5_146497034_+SINEAluName=AluSx1
ADediting_1178638chr5_146497051_+SINEAluName=AluSx1
ADediting_1178639chr5_146497054_+SINEAluName=AluSx1
ADediting_1178640chr5_146497060_+SINEAluName=AluSx1
ADediting_1178641chr5_146497066_+SINEAluName=AluSx1
ADediting_1178642chr5_146497068_+SINEAluName=AluSx1
ADediting_1178643chr5_146497101_+SINEAluName=AluSx1
ADediting_1178644chr5_146497234_+SINEAluName=AluSx1
ADediting_1178645chr5_146497248_+SINEAluName=AluSx1
ADediting_1178646chr5_146497300_+SINEAluName=AluSx1
ADediting_1178647chr5_146500757_+SINEAluName=AluJr
ADediting_1178648chr5_146500765_+SINEAluName=AluJr
ADediting_1178649chr5_146500766_+SINEAluName=AluJr
ADediting_1178650chr5_146500816_+SINEAluName=AluJr
ADediting_1178651chr5_146500825_+SINEAluName=AluJr
ADediting_1178652chr5_146500828_+SINEAluName=AluJr
ADediting_1178653chr5_146500855_+SINEAluName=AluJr
ADediting_1178654chr5_146500856_+SINEAluName=AluJr
ADediting_1178655chr5_146500858_+SINEAluName=AluJr
ADediting_1178656chr5_146500871_+SINEAluName=AluJr
ADediting_1178657chr5_146500887_+SINEAluName=AluJr
ADediting_1178658chr5_146500897_+SINEAluName=AluJr
ADediting_1178659chr5_146500905_+SINEAluName=AluJr
ADediting_1178660chr5_146500912_+SINEAluName=AluJr
ADediting_1178661chr5_146500917_+SINEAluName=AluJr
ADediting_1178662chr5_146500928_+SINEAluName=AluJr
ADediting_1178663chr5_146500990_+SINEAluName=AluJr
ADediting_1178664chr5_146501951_+SINEAluName=AluSq2
ADediting_1178665chr5_146501998_+SINEAluName=AluSq2
ADediting_1178666chr5_146502024_+SINEAluName=AluSq2
ADediting_1178667chr5_146502036_+SINEAluName=AluSq2
ADediting_1178668chr5_146502082_+SINEAluName=AluSq2
ADediting_1178669chr5_146502093_+SINEAluName=AluSq2
ADediting_1178670chr5_146504925_+SINEAluName=AluSz
ADediting_1178671chr5_146505906_+SINEAluName=AluSx
ADediting_1579696chr5_146486996_+SINEAluName=AluSz6
ADediting_1579697chr5_146487019_+SINEAluName=AluSz6
ADediting_1579698chr5_146495877_+SINEAluName=AluSx4
ADediting_1579699chr5_146495966_+SINEAluName=AluSx4
ADediting_1579700chr5_146496837_+SINEAluName=AluJo
ADediting_1579701chr5_146497146_+SINEAluName=AluSx1
ADediting_1579702chr5_146497272_+SINEAluName=AluSx1
ADediting_1579703chr5_146497278_+SINEAluName=AluSx1
ADediting_1579704chr5_146497297_+SINEAluName=AluSx1
ADediting_1579705chr5_146497310_+SINEAluName=AluSx1
ADediting_1579706chr5_146497394_+SINEAluName=AluSx1
ADediting_1579707chr5_146497439_+SINEAluName=AluSx1
ADediting_1579708chr5_146500837_+SINEAluName=AluJr
ADediting_1579709chr5_146501994_+SINEAluName=AluSq2
ADediting_1579710chr5_146502021_+SINEAluName=AluSq2
ADediting_1655351chr5_146496074_+SINEAluName=AluSx4

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RNA A-to-I editing events in the alternative splicing sites for TCERG1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TCERG1

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
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check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
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check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
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ADeditome IDChrPositoingSkipped exonENSGENSTs

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Protein coding region RNA A-to-I editings for TCERG1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for TCERG1


check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1535953chr14_101045971_+ENSG00000113649.11ENST00000296702.9TCERG1-201hsa-miR-381-3pchr51465106801465106867mer-m8146510666146510687140-10.72
ADediting_1535953chr14_101045971_+ENSG00000113649.11ENST00000394421.6TCERG1-202hsa-miR-381-3pchr51465106801465106867mer-m8146510666146510687140-10.72

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1097295chr3_85385762_+ENSG00000113649.11ENST00000296702.9TCERG1-201hsa-miR-5688chr51465110301465110367mer-m8146511016146511037147-13.85
ADediting_98288chr1_32086990_+ENSG00000113649.11ENST00000296702.9TCERG1-201hsa-miR-5585-3pchr51465106681465106758mer-1a146510654146510675153-12.07
ADediting_98288chr1_32086990_+ENSG00000113649.11ENST00000394421.6TCERG1-202hsa-miR-5585-3pchr51465106681465106758mer-1a146510654146510675153-12.07
ADediting_98289chr1_32086992_+ENSG00000113649.11ENST00000296702.9TCERG1-201hsa-miR-5585-3pchr51465106681465106758mer-1a146510654146510675153-12.07
ADediting_98289chr1_32086992_+ENSG00000113649.11ENST00000394421.6TCERG1-202hsa-miR-5585-3pchr51465106681465106758mer-1a146510654146510675153-12.07

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TCERG1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for TCERG1

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFCADediting_1178572chr5_146485837_+0.5651010904413850.03279748251740740.19215893731714-0.07427235328320653.79427592149539e-080.306095205455919
DLPFCADediting_1178581chr5_146485933_+0.2206972305659630.069753973017650.506701009530644-0.0378511091379612.46979425744617e-100.349470018082625
DLPFCADediting_1178582chr5_146485934_+0.2180930704688960.07014819250843670.546864287742451-0.03434639753264375.38761190935523e-090.323732011241902
CERADediting_1178636chr5_146497029_+5.12134998587943e-050.3244078996153770.0005298133743740130.2796076270323810.6295232700159040.0397042354153601
CERADediting_1178640chr5_146497060_+4.71688890137916e-060.3638629764937190.001507658277155570.2568781709025870.963190763842080.00379989902929512
CERADediting_1178641chr5_146497066_+0.0001146254663681080.3097597868120030.01731661566582480.1940913056623690.62505132882310.0402228359283931
CERADediting_1178644chr5_146497234_+8.07028935699643e-070.3900244792837090.0004695341489175230.2821115178079540.3376165450380520.0788301869597308
CERADediting_1178645chr5_146497248_+5.04722693503914e-050.3246661376108240.01549880538993840.1973370585532820.9508362386474750.00507668337745252
CERADediting_1178646chr5_146497300_+5.20384745065059e-100.4798273766201071.82965228821535e-060.3781777004714570.3485141881793380.0770753590513556
CERADediting_1178650chr5_146500816_+3.6864438999579e-090.4583223655959413.6381007816796e-100.4836028794132850.1866384925293860.108414459220495
CERADediting_1178651chr5_146500825_+5.84892423684915e-090.4530277682369237.03507323753682e-110.5003678461566160.06627530192756420.15035841715824
TCXADediting_1178651chr5_146500825_+1.67710619148279e-050.3435411322790120.0002949474763043930.2915391143498710.1511534693237020.117782492679291
CERADediting_1178652chr5_146500828_+1.6927387004483e-050.3433872034365322.03409529173842e-060.3766100840596010.725781285077280.0288736012416154
TCXADediting_1178652chr5_146500828_+0.000103100819416970.3117302268601530.001757110131596050.2533775219492180.1868641964229340.108359270508163
CERADediting_1178656chr5_146500871_+9.51974003679801e-060.3527865223296381.93481595259755e-090.4655688351085970.2986688370723910.0854172135507466
CERADediting_1178657chr5_146500887_+1.74856660139531e-070.4109950750776312.81335265524017e-090.4613812238788340.6487407269511040.037492987079028
CERADediting_1178659chr5_146500905_+1.38406019416694e-070.4140776953049661.3002430928288e-080.443645602916650.880108437757445-0.0124187751676671
CERADediting_1178665chr5_146501998_+6.24223967369916e-050.3208788519892781.61088156206597e-070.4120800681252560.07591248656205310.145366184588426
CERADediting_1178669chr5_146502093_+8.92149680665794e-070.3885978301211011.0370521330643e-090.472421786757260.06951522133773990.148617881991054
CERADediting_1579705chr5_146497310_+7.1884609616829e-080.4225554632386852.16652279565378e-050.3392629015552640.2706872310835870.0905079900332552
CERADediting_1579706chr5_146497394_+1.3044354662573e-070.4148541104588131.89991455369921e-050.3414647886129660.649052548795785-0.0374573317448575

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFC7.06824099981284e-450.6884787145485167.56369696664263e-760.8176784000833870.02620798104152910.126268816424249
AC4.58059932642967e-740.8590072432805668.73664068561683e-690.8431688422986123.15384068782539e-120.422196181186374
PCC4.87485992384517e-540.8481346412030819.16359182027316e-550.8510247704371591.13346171144788e-050.311744175201464
CER3.36106105794309e-110.5076180214420542.26270585063396e-050.3385308522442590.501768841401048-0.0552652094308039
TCX5.14819295602089e-220.6839073468791785.2403263084163e-250.7174574640382310.604347339524994-0.0426449955677566
FP3.6596495133287e-310.7321370408793067.44723061403092e-270.6935185950311330.2028807921856460.0958998825758455
IFG6.58154472783593e-070.8161297250067960.0001260572667073290.6922399687516740.03358764441783010.426303151878921
PG9.74285634150511e-640.8872578229482081.00117201256943e-420.8002461265028650.38846782371036-0.0635988780717203
STG4.68802081515126e-200.8021853414225862.31805899095165e-180.7798568365473430.7991842095423690.0281742970674688

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Relation with AD stages for TCERG1

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.
CERADediting_1178665chr5_146501998_+0.001144385632227610.308866444412278

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.

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RelatedDrugs for TCERG1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for TCERG1

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource