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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for TUBGCP2 |
 Gene summary |
| Gene information | Gene symbol | TUBGCP2 | Gene ID | 10844 |
| Gene name | tubulin gamma complex associated protein 2 | |
| Synonyms | ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97 | |
| Cytomap | 10q26.3 | |
| Type of gene | protein-coding | |
| Description | gamma-tubulin complex component 2gamma-ring complex protein 103 kDahGrip103spindle pole body protein Spc97 homolog | |
| Modification date | 20200320 | |
| UniProtAcc | Q9BSJ2, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for TUBGCP2 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_177061(133294622, -), ADediting_177062(133294651, -), ADediting_177063(133294676, -), ADediting_177064(133294692, -), ADediting_177065(133294699, -), ADediting_177066(133294700, -), ADediting_177067(133294731, -), ADediting_177068(133294732, -), ADediting_177069(133294764, -), ADediting_177070(133294780, -), ADediting_177071(133294791, -), ADediting_177072(133294795, -), ADediting_177073(133294804, -), ADediting_177074(133294812, -), ADediting_177075(133295190, -), ADediting_177076(133295255, -), ADediting_177077(133295281, -), ADediting_177078(133295303, -), ADediting_177079(133295315, -), ADediting_177080(133295335, -), ADediting_177081(133295347, -), ADediting_177082(133295370, -), ADediting_177083(133295385, -), ADediting_177084(133295390, -), ADediting_177085(133295395, -), ADediting_177086(133295400, -), ADediting_177087(133295401, -), ADediting_177088(133295403, -), ADediting_177089(133295433, -), ADediting_177090(133295441, -), ADediting_177091(133296513, -), ADediting_177092(133296516, -), ADediting_177093(133296550, -), ADediting_177094(133296554, -), ADediting_177095(133296569, -), ADediting_177096(133296575, -), ADediting_177097(133296580, -), ADediting_177098(133296602, -), ADediting_177099(133296606, -), ADediting_177100(133296629, -), ADediting_177101(133296642, -), ADediting_177102(133296645, -), ADediting_177103(133296646, -), ADediting_177104(133296653, -), ADediting_177105(133296654, -), ADediting_177106(133296655, -), ADediting_177107(133296656, -), ADediting_177108(133296657, -), ADediting_177109(133296658, -), ADediting_177110(133296660, -), ADediting_177111(133296667, -), ADediting_177112(133296678, -), ADediting_177113(133296700, -), ADediting_177114(133296704, -), ADediting_177115(133296736, -), ADediting_177116(133296740, -), ADediting_177117(133296748, -), ADediting_177118(133296749, -), ADediting_177119(133296755, -), ADediting_177120(133296767, -), ADediting_177121(133296771, -), ADediting_177122(133297123, -), ADediting_177123(133297139, -), ADediting_177124(133297145, -), ADediting_177125(133297157, -), ADediting_177126(133297158, -), ADediting_177127(133297197, -), ADediting_177128(133297210, -), ADediting_177129(133297236, -), ADediting_177130(133297239, -), ADediting_177131(133297253, -), ADediting_177132(133297254, -), ADediting_177133(133297267, -), ADediting_177134(133297286, -), ADediting_177135(133297289, -), ADediting_177136(133297290, -), ADediting_177137(133297298, -), ADediting_177138(133297311, -), ADediting_177139(133297316, -), ADediting_177140(133297322, -), ADediting_177141(133297335, -), ADediting_177142(133297336, -), ADediting_177143(133297351, -), ADediting_177144(133297389, -), ADediting_177145(133297396, -), ADediting_177146(133300313, -), ADediting_177147(133300319, -), ADediting_177148(133300322, -), ADediting_177149(133300331, -), ADediting_177150(133300332, -), ADediting_177151(133300347, -), ADediting_177152(133300355, -), ADediting_177153(133300358, -), ADediting_177154(133300359, -), ADediting_177155(133300384, -), ADediting_177156(133300393, -), ADediting_177157(133300407, -), ADediting_177158(133300410, -), ADediting_177159(133300428, -), ADediting_177160(133300429, -), ADediting_177161(133300439, -), ADediting_177162(133300453, -), ADediting_177163(133300455, -), ADediting_177164(133300462, -), ADediting_177165(133300465, -), ADediting_177166(133300466, -), ADediting_177167(133300474, -), ADediting_177168(133300479, -), ADediting_177169(133300492, -), ADediting_177170(133300498, -), ADediting_177171(133300505, -), ADediting_177172(133300506, -), ADediting_177173(133300512, -), ADediting_177174(133300517, -), ADediting_177175(133300527, -), ADediting_177176(133300530, -), ADediting_177177(133300541, -), ADediting_177178(133300553, -), ADediting_177179(133300567, -), ADediting_177180(133300569, -), ADediting_177181(133300571, -), ADediting_177182(133300763, -), ADediting_177183(133301191, -), ADediting_177184(133301225, -), ADediting_177185(133301226, -), ADediting_177186(133301240, -), ADediting_177187(133301257, -), ADediting_177188(133301265, -), ADediting_177189(133301266, -), ADediting_177190(133301289, -), ADediting_177191(133301293, -), ADediting_177192(133301294, -), ADediting_177193(133301295, -), ADediting_177194(133301298, -), ADediting_177195(133301301, -), ADediting_177196(133301303, -), ADediting_177197(133301318, -), ADediting_177198(133301357, -), ADediting_177199(133301397, -), ADediting_177200(133301398, -), ADediting_177201(133301811, -), ADediting_177202(133301812, -), ADediting_177203(133301852, -), ADediting_177204(133301853, -), ADediting_177205(133301879, -), ADediting_177206(133301882, -), ADediting_177207(133301883, -), ADediting_177208(133301884, -), ADediting_177209(133301885, -), ADediting_177210(133301886, -), ADediting_177211(133301889, -), ADediting_177212(133301986, -), ADediting_177213(133301987, -), ADediting_177214(133302009, -), ADediting_1522914(133294811, -), ADediting_1522915(133295409, -), ADediting_1522916(133295414, -), ADediting_1522917(133296525, -), ADediting_1522918(133296622, -), ADediting_1522919(133296690, -), ADediting_1522920(133296701, -), ADediting_1522921(133297264, -), ADediting_1522922(133297315, -), ADediting_1522923(133297360, -), ADediting_1522924(133300406, -), ADediting_1522925(133300421, -), ADediting_1522926(133300561, -), ADediting_1522927(133301234, -), ADediting_1522928(133301307, -), |
Top |
RNA editing positional annotations for TUBGCP2 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| ADediting_1522923 | chr10_133297360_- | nonsynonymous SNV | ENST00000543663.5 | c.A661G | p.S221G | 0.13 | 0.0 | -0.3 |
| ADediting_177140 | chr10_133297322_- | synonymous SNV | ENST00000543663.5 | c.A699G | p.P233P | . | . | . |
| ADediting_177141 | chr10_133297335_- | nonsynonymous SNV | ENST00000543663.5 | c.A686G | p.N229S | 0.0 | 0.086 | -0.24 |
| ADediting_177142 | chr10_133297336_- | nonsynonymous SNV | ENST00000543663.5 | c.A685G | p.N229D | 0.0 | 0.133 | 0.06 |
| ADediting_177143 | chr10_133297351_- | nonsynonymous SNV | ENST00000543663.5 | c.A670G | p.I224V | 1.0 | 0.068 | -0.03 |
| ADediting_177144 | chr10_133297389_- | nonsynonymous SNV | ENST00000543663.5 | c.A632G | p.N211S | 0.0 | 0.0 | -0.3 |
| ADediting_177145 | chr10_133297396_- | nonsynonymous SNV | ENST00000543663.5 | c.A625G | p.R209G | 0.058 | 0.291 | -0.25 |
| ADediting_177164 | chr10_133300462_- | stoploss | ENST00000487796.2 | c.A236G | p.X79W | . | . | . |
| ADediting_177165 | chr10_133300465_- | nonsynonymous SNV | ENST00000487796.2 | c.A233G | p.K78R | . | . | . |
| ADediting_177166 | chr10_133300466_- | nonsynonymous SNV | ENST00000487796.2 | c.A232G | p.K78E | . | . | . |
| ADediting_177167 | chr10_133300474_- | nonsynonymous SNV | ENST00000487796.2 | c.A224G | p.Q75R | . | . | . |
| ADediting_177168 | chr10_133300479_- | synonymous SNV | ENST00000487796.2 | c.A219G | p.P73P | . | . | . |
| ADediting_177169 | chr10_133300492_- | nonsynonymous SNV | ENST00000487796.2 | c.A206G | p.D69G | . | . | . |
| ADediting_177170 | chr10_133300498_- | nonsynonymous SNV | ENST00000487796.2 | c.A200G | p.Q67R | . | . | . |
| ADediting_177171 | chr10_133300505_- | nonsynonymous SNV | ENST00000487796.2 | c.A193G | p.T65A | . | . | . |
| ADediting_177172 | chr10_133300506_- | synonymous SNV | ENST00000487796.2 | c.A192G | p.S64S | . | . | . |
| ADediting_177173 | chr10_133300512_- | synonymous SNV | ENST00000487796.2 | c.A186G | p.A62A | . | . | . |
| ADediting_177174 | chr10_133300517_- | nonsynonymous SNV | ENST00000487796.2 | c.A181G | p.T61A | . | . | . |
| ADediting_177175 | chr10_133300527_- | synonymous SNV | ENST00000487796.2 | c.A171G | p.R57R | . | . | . |
| ADediting_177176 | chr10_133300530_- | synonymous SNV | ENST00000487796.2 | c.A168G | p.A56A | . | . | . |
| ADediting_177177 | chr10_133300541_- | nonsynonymous SNV | ENST00000487796.2 | c.A157G | p.M53V | . | . | . |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_177061 | chr10_133294622_- | intronic |
| ADediting_177062 | chr10_133294651_- | intronic |
| ADediting_177063 | chr10_133294676_- | intronic |
| ADediting_177064 | chr10_133294692_- | intronic |
| ADediting_177065 | chr10_133294699_- | intronic |
| ADediting_177066 | chr10_133294700_- | intronic |
| ADediting_177067 | chr10_133294731_- | intronic |
| ADediting_177068 | chr10_133294732_- | intronic |
| ADediting_177069 | chr10_133294764_- | intronic |
| ADediting_177070 | chr10_133294780_- | intronic |
| ADediting_177071 | chr10_133294791_- | intronic |
| ADediting_177072 | chr10_133294795_- | intronic |
| ADediting_177073 | chr10_133294804_- | intronic |
| ADediting_177074 | chr10_133294812_- | intronic |
| ADediting_177075 | chr10_133295190_- | ncRNA_exonic |
| ADediting_177076 | chr10_133295255_- | ncRNA_exonic |
| ADediting_177077 | chr10_133295281_- | ncRNA_exonic |
| ADediting_177078 | chr10_133295303_- | ncRNA_intronic |
| ADediting_177079 | chr10_133295315_- | ncRNA_intronic |
| ADediting_177080 | chr10_133295335_- | ncRNA_intronic |
| ADediting_177081 | chr10_133295347_- | ncRNA_intronic |
| ADediting_177082 | chr10_133295370_- | ncRNA_exonic |
| ADediting_177083 | chr10_133295385_- | ncRNA_exonic |
| ADediting_177084 | chr10_133295390_- | ncRNA_exonic |
| ADediting_177085 | chr10_133295395_- | ncRNA_exonic |
| ADediting_177086 | chr10_133295400_- | ncRNA_exonic |
| ADediting_177087 | chr10_133295401_- | ncRNA_exonic |
| ADediting_177088 | chr10_133295403_- | ncRNA_exonic |
| ADediting_177089 | chr10_133295433_- | ncRNA_exonic |
| ADediting_177090 | chr10_133295441_- | ncRNA_splicing |
| ADediting_177091 | chr10_133296513_- | intronic |
| ADediting_177092 | chr10_133296516_- | intronic |
| ADediting_177093 | chr10_133296550_- | intronic |
| ADediting_177094 | chr10_133296554_- | intronic |
| ADediting_177095 | chr10_133296569_- | intronic |
| ADediting_177096 | chr10_133296575_- | intronic |
| ADediting_177097 | chr10_133296580_- | intronic |
| ADediting_177098 | chr10_133296602_- | intronic |
| ADediting_177099 | chr10_133296606_- | intronic |
| ADediting_177100 | chr10_133296629_- | intronic |
| ADediting_177101 | chr10_133296642_- | intronic |
| ADediting_177102 | chr10_133296645_- | intronic |
| ADediting_177103 | chr10_133296646_- | intronic |
| ADediting_177104 | chr10_133296653_- | intronic |
| ADediting_177105 | chr10_133296654_- | intronic |
| ADediting_177106 | chr10_133296655_- | intronic |
| ADediting_177107 | chr10_133296656_- | intronic |
| ADediting_177108 | chr10_133296657_- | intronic |
| ADediting_177109 | chr10_133296658_- | intronic |
| ADediting_177110 | chr10_133296660_- | intronic |
| ADediting_177111 | chr10_133296667_- | intronic |
| ADediting_177112 | chr10_133296678_- | intronic |
| ADediting_177113 | chr10_133296700_- | intronic |
| ADediting_177114 | chr10_133296704_- | intronic |
| ADediting_177115 | chr10_133296736_- | intronic |
| ADediting_177116 | chr10_133296740_- | intronic |
| ADediting_177117 | chr10_133296748_- | intronic |
| ADediting_177118 | chr10_133296749_- | intronic |
| ADediting_177119 | chr10_133296755_- | intronic |
| ADediting_177120 | chr10_133296767_- | intronic |
| ADediting_177121 | chr10_133296771_- | intronic |
| ADediting_177122 | chr10_133297123_- | intronic |
| ADediting_177123 | chr10_133297139_- | intronic |
| ADediting_177124 | chr10_133297145_- | intronic |
| ADediting_177125 | chr10_133297157_- | intronic |
| ADediting_177126 | chr10_133297158_- | intronic |
| ADediting_177127 | chr10_133297197_- | intronic |
| ADediting_177128 | chr10_133297210_- | intronic |
| ADediting_177129 | chr10_133297236_- | intronic |
| ADediting_177130 | chr10_133297239_- | intronic |
| ADediting_177131 | chr10_133297253_- | intronic |
| ADediting_177132 | chr10_133297254_- | intronic |
| ADediting_177133 | chr10_133297267_- | intronic |
| ADediting_177134 | chr10_133297286_- | intronic |
| ADediting_177135 | chr10_133297289_- | intronic |
| ADediting_177136 | chr10_133297290_- | intronic |
| ADediting_177137 | chr10_133297298_- | intronic |
| ADediting_177138 | chr10_133297311_- | intronic |
| ADediting_177139 | chr10_133297316_- | intronic |
| ADediting_177140 | chr10_133297322_- | exonic |
| ADediting_177141 | chr10_133297335_- | exonic |
| ADediting_177142 | chr10_133297336_- | exonic |
| ADediting_177143 | chr10_133297351_- | exonic |
| ADediting_177144 | chr10_133297389_- | exonic |
| ADediting_177145 | chr10_133297396_- | exonic |
| ADediting_177146 | chr10_133300313_- | UTR3 |
| ADediting_177147 | chr10_133300319_- | UTR3 |
| ADediting_177148 | chr10_133300322_- | UTR3 |
| ADediting_177149 | chr10_133300331_- | UTR3 |
| ADediting_177150 | chr10_133300332_- | UTR3 |
| ADediting_177151 | chr10_133300347_- | UTR3 |
| ADediting_177152 | chr10_133300355_- | UTR3 |
| ADediting_177153 | chr10_133300358_- | UTR3 |
| ADediting_177154 | chr10_133300359_- | UTR3 |
| ADediting_177155 | chr10_133300384_- | UTR3 |
| ADediting_177156 | chr10_133300393_- | UTR3 |
| ADediting_177157 | chr10_133300407_- | UTR3 |
| ADediting_177158 | chr10_133300410_- | UTR3 |
| ADediting_177159 | chr10_133300428_- | UTR3 |
| ADediting_177160 | chr10_133300429_- | UTR3 |
| ADediting_177161 | chr10_133300439_- | UTR3 |
| ADediting_177162 | chr10_133300453_- | UTR3 |
| ADediting_177163 | chr10_133300455_- | UTR3 |
| ADediting_177164 | chr10_133300462_- | exonic |
| ADediting_177165 | chr10_133300465_- | exonic |
| ADediting_177166 | chr10_133300466_- | exonic |
| ADediting_177167 | chr10_133300474_- | exonic |
| ADediting_177168 | chr10_133300479_- | exonic |
| ADediting_177169 | chr10_133300492_- | exonic |
| ADediting_177170 | chr10_133300498_- | exonic |
| ADediting_177171 | chr10_133300505_- | exonic |
| ADediting_177172 | chr10_133300506_- | exonic |
| ADediting_177173 | chr10_133300512_- | exonic |
| ADediting_177174 | chr10_133300517_- | exonic |
| ADediting_177175 | chr10_133300527_- | exonic |
| ADediting_177176 | chr10_133300530_- | exonic |
| ADediting_177177 | chr10_133300541_- | exonic |
| ADediting_177178 | chr10_133300553_- | intronic |
| ADediting_177179 | chr10_133300567_- | intronic |
| ADediting_177180 | chr10_133300569_- | intronic |
| ADediting_177181 | chr10_133300571_- | intronic |
| ADediting_177182 | chr10_133300763_- | intronic |
| ADediting_177183 | chr10_133301191_- | intronic |
| ADediting_177184 | chr10_133301225_- | intronic |
| ADediting_177185 | chr10_133301226_- | intronic |
| ADediting_177186 | chr10_133301240_- | intronic |
| ADediting_177187 | chr10_133301257_- | intronic |
| ADediting_177188 | chr10_133301265_- | intronic |
| ADediting_177189 | chr10_133301266_- | intronic |
| ADediting_177190 | chr10_133301289_- | intronic |
| ADediting_177191 | chr10_133301293_- | intronic |
| ADediting_177192 | chr10_133301294_- | intronic |
| ADediting_177193 | chr10_133301295_- | intronic |
| ADediting_177194 | chr10_133301298_- | intronic |
| ADediting_177195 | chr10_133301301_- | intronic |
| ADediting_177196 | chr10_133301303_- | intronic |
| ADediting_177197 | chr10_133301318_- | intronic |
| ADediting_177198 | chr10_133301357_- | intronic |
| ADediting_177199 | chr10_133301397_- | intronic |
| ADediting_177200 | chr10_133301398_- | intronic |
| ADediting_177201 | chr10_133301811_- | intronic |
| ADediting_177202 | chr10_133301812_- | intronic |
| ADediting_177203 | chr10_133301852_- | intronic |
| ADediting_177204 | chr10_133301853_- | intronic |
| ADediting_177205 | chr10_133301879_- | intronic |
| ADediting_177206 | chr10_133301882_- | intronic |
| ADediting_177207 | chr10_133301883_- | intronic |
| ADediting_177208 | chr10_133301884_- | intronic |
| ADediting_177209 | chr10_133301885_- | intronic |
| ADediting_177210 | chr10_133301886_- | intronic |
| ADediting_177211 | chr10_133301889_- | intronic |
| ADediting_177212 | chr10_133301986_- | intronic |
| ADediting_177213 | chr10_133301987_- | intronic |
| ADediting_177214 | chr10_133302009_- | intronic |
| ADediting_1522914 | chr10_133294811_- | intronic |
| ADediting_1522915 | chr10_133295409_- | ncRNA_exonic |
| ADediting_1522916 | chr10_133295414_- | ncRNA_exonic |
| ADediting_1522917 | chr10_133296525_- | intronic |
| ADediting_1522918 | chr10_133296622_- | intronic |
| ADediting_1522919 | chr10_133296690_- | intronic |
| ADediting_1522920 | chr10_133296701_- | intronic |
| ADediting_1522921 | chr10_133297264_- | intronic |
| ADediting_1522922 | chr10_133297315_- | intronic |
| ADediting_1522923 | chr10_133297360_- | exonic |
| ADediting_1522924 | chr10_133300406_- | UTR3 |
| ADediting_1522925 | chr10_133300421_- | UTR3 |
| ADediting_1522926 | chr10_133300561_- | intronic |
| ADediting_1522927 | chr10_133301234_- | intronic |
| ADediting_1522928 | chr10_133301307_- | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_177061 | chr10_133294622_- | SINE | Alu | Name=AluJr |
| ADediting_177062 | chr10_133294651_- | SINE | Alu | Name=AluJr |
| ADediting_177063 | chr10_133294676_- | SINE | Alu | Name=AluJr |
| ADediting_177064 | chr10_133294692_- | SINE | Alu | Name=AluJr |
| ADediting_177065 | chr10_133294699_- | SINE | Alu | Name=AluJr |
| ADediting_177066 | chr10_133294700_- | SINE | Alu | Name=AluJr |
| ADediting_177067 | chr10_133294731_- | SINE | Alu | Name=AluJr |
| ADediting_177068 | chr10_133294732_- | SINE | Alu | Name=AluJr |
| ADediting_177069 | chr10_133294764_- | SINE | Alu | Name=AluJr |
| ADediting_177070 | chr10_133294780_- | SINE | Alu | Name=AluJr |
| ADediting_177071 | chr10_133294791_- | SINE | Alu | Name=AluJr |
| ADediting_177072 | chr10_133294795_- | SINE | Alu | Name=AluJr |
| ADediting_177073 | chr10_133294804_- | SINE | Alu | Name=AluJr |
| ADediting_177074 | chr10_133294812_- | SINE | Alu | Name=AluJr |
| ADediting_177075 | chr10_133295190_- | SINE | Alu | Name=AluJb |
| ADediting_177076 | chr10_133295255_- | SINE | Alu | Name=AluJb |
| ADediting_177077 | chr10_133295281_- | SINE | Alu | Name=AluJb |
| ADediting_177078 | chr10_133295303_- | SINE | Alu | Name=AluJb |
| ADediting_177079 | chr10_133295315_- | SINE | Alu | Name=AluJb |
| ADediting_177080 | chr10_133295335_- | SINE | Alu | Name=AluJb |
| ADediting_177081 | chr10_133295347_- | SINE | Alu | Name=AluJb |
| ADediting_177082 | chr10_133295370_- | SINE | Alu | Name=AluJb |
| ADediting_177083 | chr10_133295385_- | SINE | Alu | Name=AluJb |
| ADediting_177084 | chr10_133295390_- | SINE | Alu | Name=AluJb |
| ADediting_177085 | chr10_133295395_- | SINE | Alu | Name=AluJb |
| ADediting_177086 | chr10_133295400_- | SINE | Alu | Name=AluJb |
| ADediting_177087 | chr10_133295401_- | SINE | Alu | Name=AluJb |
| ADediting_177088 | chr10_133295403_- | SINE | Alu | Name=AluJb |
| ADediting_177089 | chr10_133295433_- | SINE | Alu | Name=AluJb |
| ADediting_177090 | chr10_133295441_- | SINE | Alu | Name=AluJb |
| ADediting_177091 | chr10_133296513_- | SINE | Alu | Name=AluJb |
| ADediting_177092 | chr10_133296516_- | SINE | Alu | Name=AluJb |
| ADediting_177093 | chr10_133296550_- | SINE | Alu | Name=AluJb |
| ADediting_177094 | chr10_133296554_- | SINE | Alu | Name=AluJb |
| ADediting_177095 | chr10_133296569_- | SINE | Alu | Name=AluJb |
| ADediting_177096 | chr10_133296575_- | SINE | Alu | Name=AluJb |
| ADediting_177097 | chr10_133296580_- | SINE | Alu | Name=AluJb |
| ADediting_177098 | chr10_133296602_- | SINE | Alu | Name=AluJb |
| ADediting_177099 | chr10_133296606_- | SINE | Alu | Name=AluJb |
| ADediting_177100 | chr10_133296629_- | SINE | Alu | Name=AluJb |
| ADediting_177101 | chr10_133296642_- | SINE | Alu | Name=AluJb |
| ADediting_177102 | chr10_133296645_- | SINE | Alu | Name=AluJb |
| ADediting_177103 | chr10_133296646_- | SINE | Alu | Name=AluJb |
| ADediting_177104 | chr10_133296653_- | SINE | Alu | Name=AluJb |
| ADediting_177105 | chr10_133296654_- | SINE | Alu | Name=AluJb |
| ADediting_177106 | chr10_133296655_- | SINE | Alu | Name=AluJb |
| ADediting_177107 | chr10_133296656_- | SINE | Alu | Name=AluJb |
| ADediting_177108 | chr10_133296657_- | SINE | Alu | Name=AluJb |
| ADediting_177109 | chr10_133296658_- | SINE | Alu | Name=AluJb |
| ADediting_177110 | chr10_133296660_- | SINE | Alu | Name=AluJb |
| ADediting_177111 | chr10_133296667_- | SINE | Alu | Name=AluJb |
| ADediting_177112 | chr10_133296678_- | SINE | Alu | Name=AluJb |
| ADediting_177113 | chr10_133296700_- | SINE | Alu | Name=AluJb |
| ADediting_177114 | chr10_133296704_- | SINE | Alu | Name=AluJb |
| ADediting_177115 | chr10_133296736_- | SINE | Alu | Name=AluJb |
| ADediting_177116 | chr10_133296740_- | SINE | Alu | Name=AluJb |
| ADediting_177117 | chr10_133296748_- | SINE | Alu | Name=AluJb |
| ADediting_177118 | chr10_133296749_- | SINE | Alu | Name=AluJb |
| ADediting_177119 | chr10_133296755_- | SINE | Alu | Name=AluJb |
| ADediting_177120 | chr10_133296767_- | SINE | Alu | Name=AluJb |
| ADediting_177121 | chr10_133296771_- | SINE | Alu | Name=AluJb |
| ADediting_177122 | chr10_133297123_- | SINE | Alu | Name=AluSx1 |
| ADediting_177123 | chr10_133297139_- | SINE | Alu | Name=AluSx1 |
| ADediting_177124 | chr10_133297145_- | SINE | Alu | Name=AluSx1 |
| ADediting_177125 | chr10_133297157_- | SINE | Alu | Name=AluSx1 |
| ADediting_177126 | chr10_133297158_- | SINE | Alu | Name=AluSx1 |
| ADediting_177127 | chr10_133297197_- | SINE | Alu | Name=AluSx1 |
| ADediting_177128 | chr10_133297210_- | SINE | Alu | Name=AluSx1 |
| ADediting_177129 | chr10_133297236_- | SINE | Alu | Name=AluSx1 |
| ADediting_177130 | chr10_133297239_- | SINE | Alu | Name=AluSx1 |
| ADediting_177131 | chr10_133297253_- | SINE | Alu | Name=AluSx1 |
| ADediting_177132 | chr10_133297254_- | SINE | Alu | Name=AluSx1 |
| ADediting_177133 | chr10_133297267_- | SINE | Alu | Name=AluSx1 |
| ADediting_177134 | chr10_133297286_- | SINE | Alu | Name=AluSx1 |
| ADediting_177135 | chr10_133297289_- | SINE | Alu | Name=AluSx1 |
| ADediting_177136 | chr10_133297290_- | SINE | Alu | Name=AluSx1 |
| ADediting_177137 | chr10_133297298_- | SINE | Alu | Name=AluSx1 |
| ADediting_177138 | chr10_133297311_- | SINE | Alu | Name=AluSx1 |
| ADediting_177139 | chr10_133297316_- | SINE | Alu | Name=AluSx1 |
| ADediting_177140 | chr10_133297322_- | SINE | Alu | Name=AluSx1 |
| ADediting_177141 | chr10_133297335_- | SINE | Alu | Name=AluSx1 |
| ADediting_177142 | chr10_133297336_- | SINE | Alu | Name=AluSx1 |
| ADediting_177143 | chr10_133297351_- | SINE | Alu | Name=AluSx1 |
| ADediting_177144 | chr10_133297389_- | SINE | Alu | Name=AluSx1 |
| ADediting_177145 | chr10_133297396_- | SINE | Alu | Name=AluSx1 |
| ADediting_177146 | chr10_133300313_- | SINE | Alu | Name=AluJb |
| ADediting_177147 | chr10_133300319_- | SINE | Alu | Name=AluJb |
| ADediting_177148 | chr10_133300322_- | SINE | Alu | Name=AluJb |
| ADediting_177149 | chr10_133300331_- | SINE | Alu | Name=AluJb |
| ADediting_177150 | chr10_133300332_- | SINE | Alu | Name=AluJb |
| ADediting_177151 | chr10_133300347_- | SINE | Alu | Name=AluJb |
| ADediting_177152 | chr10_133300355_- | SINE | Alu | Name=AluJb |
| ADediting_177153 | chr10_133300358_- | SINE | Alu | Name=AluJb |
| ADediting_177154 | chr10_133300359_- | SINE | Alu | Name=AluJb |
| ADediting_177155 | chr10_133300384_- | SINE | Alu | Name=AluJb |
| ADediting_177156 | chr10_133300393_- | SINE | Alu | Name=AluJb |
| ADediting_177157 | chr10_133300407_- | SINE | Alu | Name=AluJb |
| ADediting_177158 | chr10_133300410_- | SINE | Alu | Name=AluJb |
| ADediting_177159 | chr10_133300428_- | SINE | Alu | Name=AluJb |
| ADediting_177160 | chr10_133300429_- | SINE | Alu | Name=AluJb |
| ADediting_177161 | chr10_133300439_- | SINE | Alu | Name=AluJb |
| ADediting_177162 | chr10_133300453_- | SINE | Alu | Name=AluJb |
| ADediting_177163 | chr10_133300455_- | SINE | Alu | Name=AluJb |
| ADediting_177164 | chr10_133300462_- | SINE | Alu | Name=AluJb |
| ADediting_177165 | chr10_133300465_- | SINE | Alu | Name=AluJb |
| ADediting_177166 | chr10_133300466_- | SINE | Alu | Name=AluJb |
| ADediting_177167 | chr10_133300474_- | SINE | Alu | Name=AluJb |
| ADediting_177168 | chr10_133300479_- | SINE | Alu | Name=AluJb |
| ADediting_177169 | chr10_133300492_- | SINE | Alu | Name=AluJb |
| ADediting_177170 | chr10_133300498_- | SINE | Alu | Name=AluJb |
| ADediting_177171 | chr10_133300505_- | SINE | Alu | Name=AluJb |
| ADediting_177172 | chr10_133300506_- | SINE | Alu | Name=AluJb |
| ADediting_177173 | chr10_133300512_- | SINE | Alu | Name=AluJb |
| ADediting_177174 | chr10_133300517_- | SINE | Alu | Name=AluJb |
| ADediting_177175 | chr10_133300527_- | SINE | Alu | Name=AluJb |
| ADediting_177176 | chr10_133300530_- | SINE | Alu | Name=AluJb |
| ADediting_177177 | chr10_133300541_- | SINE | Alu | Name=AluJb |
| ADediting_177178 | chr10_133300553_- | SINE | Alu | Name=AluJb |
| ADediting_177179 | chr10_133300567_- | SINE | Alu | Name=AluJb |
| ADediting_177180 | chr10_133300569_- | SINE | Alu | Name=AluJb |
| ADediting_177181 | chr10_133300571_- | SINE | Alu | Name=AluJb |
| ADediting_177182 | chr10_133300763_- | SINE | Alu | Name=AluJb |
| ADediting_177183 | chr10_133301191_- | SINE | Alu | Name=AluSp |
| ADediting_177184 | chr10_133301225_- | SINE | Alu | Name=AluSp |
| ADediting_177185 | chr10_133301226_- | SINE | Alu | Name=AluSp |
| ADediting_177186 | chr10_133301240_- | SINE | Alu | Name=AluSp |
| ADediting_177187 | chr10_133301257_- | SINE | Alu | Name=AluSp |
| ADediting_177188 | chr10_133301265_- | SINE | Alu | Name=AluSp |
| ADediting_177189 | chr10_133301266_- | SINE | Alu | Name=AluSp |
| ADediting_177190 | chr10_133301289_- | SINE | Alu | Name=AluSp |
| ADediting_177191 | chr10_133301293_- | SINE | Alu | Name=AluSp |
| ADediting_177192 | chr10_133301294_- | SINE | Alu | Name=AluSp |
| ADediting_177193 | chr10_133301295_- | SINE | Alu | Name=AluSp |
| ADediting_177194 | chr10_133301298_- | SINE | Alu | Name=AluSp |
| ADediting_177195 | chr10_133301301_- | SINE | Alu | Name=AluSp |
| ADediting_177196 | chr10_133301303_- | SINE | Alu | Name=AluSp |
| ADediting_177197 | chr10_133301318_- | SINE | Alu | Name=AluSp |
| ADediting_177198 | chr10_133301357_- | SINE | Alu | Name=AluSp |
| ADediting_177199 | chr10_133301397_- | SINE | Alu | Name=AluSp |
| ADediting_177200 | chr10_133301398_- | SINE | Alu | Name=AluSp |
| ADediting_177201 | chr10_133301811_- | SINE | Alu | Name=AluY |
| ADediting_177202 | chr10_133301812_- | SINE | Alu | Name=AluY |
| ADediting_177203 | chr10_133301852_- | SINE | Alu | Name=AluY |
| ADediting_177204 | chr10_133301853_- | SINE | Alu | Name=AluY |
| ADediting_177205 | chr10_133301879_- | SINE | Alu | Name=AluY |
| ADediting_177206 | chr10_133301882_- | SINE | Alu | Name=AluY |
| ADediting_177207 | chr10_133301883_- | SINE | Alu | Name=AluY |
| ADediting_177208 | chr10_133301884_- | SINE | Alu | Name=AluY |
| ADediting_177209 | chr10_133301885_- | SINE | Alu | Name=AluY |
| ADediting_177210 | chr10_133301886_- | SINE | Alu | Name=AluY |
| ADediting_177211 | chr10_133301889_- | SINE | Alu | Name=AluY |
| ADediting_177212 | chr10_133301986_- | SINE | Alu | Name=AluY |
| ADediting_177213 | chr10_133301987_- | SINE | Alu | Name=AluY |
| ADediting_177214 | chr10_133302009_- | SINE | Alu | Name=AluY |
| ADediting_1522914 | chr10_133294811_- | SINE | Alu | Name=AluJr |
| ADediting_1522915 | chr10_133295409_- | SINE | Alu | Name=AluJb |
| ADediting_1522916 | chr10_133295414_- | SINE | Alu | Name=AluJb |
| ADediting_1522917 | chr10_133296525_- | SINE | Alu | Name=AluJb |
| ADediting_1522918 | chr10_133296622_- | SINE | Alu | Name=AluJb |
| ADediting_1522919 | chr10_133296690_- | SINE | Alu | Name=AluJb |
| ADediting_1522920 | chr10_133296701_- | SINE | Alu | Name=AluJb |
| ADediting_1522921 | chr10_133297264_- | SINE | Alu | Name=AluSx1 |
| ADediting_1522922 | chr10_133297315_- | SINE | Alu | Name=AluSx1 |
| ADediting_1522923 | chr10_133297360_- | SINE | Alu | Name=AluSx1 |
| ADediting_1522924 | chr10_133300406_- | SINE | Alu | Name=AluJb |
| ADediting_1522925 | chr10_133300421_- | SINE | Alu | Name=AluJb |
| ADediting_1522926 | chr10_133300561_- | SINE | Alu | Name=AluJb |
| ADediting_1522927 | chr10_133301234_- | SINE | Alu | Name=AluSp |
| ADediting_1522928 | chr10_133301307_- | SINE | Alu | Name=AluSp |
Top |
RNA A-to-I editing events in the alternative splicing sites for TUBGCP2 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| ES | ADediting_1522926 | chr10_133300561_- | 133300545:133300567 | 3ss | 14i | AGTCTTACTCTGTCACCCAGGCT | 3.88 | AGTCTTGCTCTGTCACCCAGGCT | 4.71 |
| ES | ADediting_177178 | chr10_133300553_- | 133300545:133300567 | 3ss | 6i | AGTCTTACTCTGTCACCCAGGCT | 3.88 | AGTCTTACTCTGTCGCCCAGGCT | 3.06 |
| ES | ADediting_177178 | chr10_133300553_- | 133300545:133300567 | 3ss | 6i | AGTCTTACTCTGTCACCCAGGCT | 3.88 | AGTCTTACTCTGTCGCCCAGGCT | 3.06 |
| ES | ADediting_1522922 | chr10_133297315_- | 133297315:133297323 | 5ss | 6i | CAGGTTGAA | 1.26 | CAGGTTGAG | 1.68 |
| ES | ADediting_177139 | chr10_133297316_- | 133297315:133297323 | 5ss | 5i | CAGGTTGAA | 1.26 | CAGGTTGGA | 5.59 |
| ES | ADediting_177139 | chr10_133297316_- | 133297315:133297323 | 5ss | 5i | CAGGTTGAA | 1.26 | CAGGTTGGA | 5.59 |
| ES | ADediting_177140 | chr10_133297322_- | 133297315:133297323 | 5ss | 2e | CAGGTTGAA | 1.26 | CGGGTTGAA | -6.79 |
| ES | ADediting_177140 | chr10_133297322_- | 133297315:133297323 | 5ss | 2e | CAGGTTGAA | 1.26 | CGGGTTGAA | -6.79 |
| ES | ADediting_177162 | chr10_133300453_- | 133300446:133300454 | 5ss | 2e | CAGGCAAGT | 3.10 | CGGGCAAGT | 2.99 |
| ES | ADediting_177162 | chr10_133300453_- | 133300446:133300454 | 5ss | 2e | CAGGCAAGT | 3.10 | CGGGCAAGT | 2.99 |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for TUBGCP2 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
Top |
Protein coding region RNA A-to-I editings for TUBGCP2 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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Top |
The effects of the RNA editing to the miRNA binding sites for TUBGCP2 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337757 | chr7_5495852_- | ENSG00000130640.13 | ENST00000252936.7 | TUBGCP2-201 | hsa-miR-589-3p | chr10 | 133278939 | 133278945 | 7mer-m8 | 133278938 | 133278963 | 146 | -21.18 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000130640.13 | ENST00000252936.7 | TUBGCP2-201 | hsa-miR-589-3p | chr10 | 133279682 | 133279688 | 7mer-m8 | 133279681 | 133279701 | 141 | -15.24 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000130640.13 | ENST00000368562.5 | TUBGCP2-202 | hsa-miR-589-3p | chr10 | 133279682 | 133279688 | 7mer-m8 | 133279681 | 133279701 | 141 | -15.24 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000130640.13 | ENST00000368563.6 | TUBGCP2-203 | hsa-miR-589-3p | chr10 | 133278939 | 133278945 | 7mer-m8 | 133278938 | 133278963 | 146 | -21.18 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000130640.13 | ENST00000368563.6 | TUBGCP2-203 | hsa-miR-589-3p | chr10 | 133279682 | 133279688 | 7mer-m8 | 133279681 | 133279701 | 141 | -15.24 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000130640.13 | ENST00000417178.6 | TUBGCP2-204 | hsa-miR-589-3p | chr10 | 133278939 | 133278945 | 7mer-m8 | 133278938 | 133278963 | 146 | -21.18 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000130640.13 | ENST00000417178.6 | TUBGCP2-204 | hsa-miR-589-3p | chr10 | 133279682 | 133279688 | 7mer-m8 | 133279681 | 133279701 | 141 | -15.24 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000130640.13 | ENST00000543663.5 | TUBGCP2-210 | hsa-miR-589-3p | chr10 | 133278939 | 133278945 | 7mer-m8 | 133278938 | 133278963 | 146 | -21.18 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000130640.13 | ENST00000543663.5 | TUBGCP2-210 | hsa-miR-589-3p | chr10 | 133279682 | 133279688 | 7mer-m8 | 133279681 | 133279701 | 141 | -15.24 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000130640.13 | ENST00000252936.7 | TUBGCP2-201 | hsa-miR-641 | chr10 | 133279569 | 133279575 | 7mer-m8 | 133279568 | 133279591 | 140 | -17.08 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000130640.13 | ENST00000368563.6 | TUBGCP2-203 | hsa-miR-641 | chr10 | 133279569 | 133279575 | 7mer-m8 | 133279568 | 133279591 | 140 | -17.08 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000130640.13 | ENST00000417178.6 | TUBGCP2-204 | hsa-miR-641 | chr10 | 133279569 | 133279575 | 7mer-m8 | 133279568 | 133279591 | 140 | -17.08 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000130640.13 | ENST00000543663.5 | TUBGCP2-210 | hsa-miR-641 | chr10 | 133279569 | 133279575 | 7mer-m8 | 133279568 | 133279591 | 140 | -17.08 |
| ADediting_286380 | chr11_79422188_- | ENSG00000130640.13 | ENST00000252936.7 | TUBGCP2-201 | hsa-miR-5579-3p | chr10 | 133279475 | 133279481 | 7mer-m8 | 133279474 | 133279495 | 151 | -18.94 |
| ADediting_286380 | chr11_79422188_- | ENSG00000130640.13 | ENST00000368563.6 | TUBGCP2-203 | hsa-miR-5579-3p | chr10 | 133279475 | 133279481 | 7mer-m8 | 133279474 | 133279495 | 151 | -18.94 |
| ADediting_286380 | chr11_79422188_- | ENSG00000130640.13 | ENST00000417178.6 | TUBGCP2-204 | hsa-miR-5579-3p | chr10 | 133279475 | 133279481 | 7mer-m8 | 133279474 | 133279495 | 151 | -18.94 |
| ADediting_286380 | chr11_79422188_- | ENSG00000130640.13 | ENST00000543663.5 | TUBGCP2-210 | hsa-miR-5579-3p | chr10 | 133279475 | 133279481 | 7mer-m8 | 133279474 | 133279495 | 151 | -18.94 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337757 | chr7_5495852_- | ENSG00000130640.13 | ENST00000252936.7 | TUBGCP2-201 | hsa-miR-589-3p | chr10 | 133279675 | 133279681 | 7mer-m8 | 133279674 | 133279696 | 149 | -15.53 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000130640.13 | ENST00000368562.5 | TUBGCP2-202 | hsa-miR-589-3p | chr10 | 133279675 | 133279681 | 7mer-m8 | 133279674 | 133279696 | 149 | -15.53 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000130640.13 | ENST00000368563.6 | TUBGCP2-203 | hsa-miR-589-3p | chr10 | 133279675 | 133279681 | 7mer-m8 | 133279674 | 133279696 | 149 | -15.53 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000130640.13 | ENST00000417178.6 | TUBGCP2-204 | hsa-miR-589-3p | chr10 | 133279675 | 133279681 | 7mer-m8 | 133279674 | 133279696 | 149 | -15.53 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000130640.13 | ENST00000543663.5 | TUBGCP2-210 | hsa-miR-589-3p | chr10 | 133279675 | 133279681 | 7mer-m8 | 133279674 | 133279696 | 149 | -15.53 |
| ADediting_291761 | chr11_93733708_- | ENSG00000130640.13 | ENST00000252936.7 | TUBGCP2-201 | hsa-miR-1304-3p | chr10 | 133278845 | 133278851 | 7mer-m8 | 133278844 | 133278865 | 141 | -18.7 |
| ADediting_291761 | chr11_93733708_- | ENSG00000130640.13 | ENST00000368563.6 | TUBGCP2-203 | hsa-miR-1304-3p | chr10 | 133278845 | 133278851 | 7mer-m8 | 133278844 | 133278865 | 141 | -18.7 |
| ADediting_291761 | chr11_93733708_- | ENSG00000130640.13 | ENST00000417178.6 | TUBGCP2-204 | hsa-miR-1304-3p | chr10 | 133278845 | 133278851 | 7mer-m8 | 133278844 | 133278865 | 141 | -18.7 |
| ADediting_291761 | chr11_93733708_- | ENSG00000130640.13 | ENST00000543663.5 | TUBGCP2-210 | hsa-miR-1304-3p | chr10 | 133278845 | 133278851 | 7mer-m8 | 133278844 | 133278865 | 141 | -18.7 |
| ADediting_527135 | chr16_24203190_+ | ENSG00000130640.13 | ENST00000252936.7 | TUBGCP2-201 | hsa-miR-1273h-3p | chr10 | 133278678 | 133278684 | 7mer-m8 | 133278677 | 133278698 | 140 | -17.58 |
| ADediting_527135 | chr16_24203190_+ | ENSG00000130640.13 | ENST00000368563.6 | TUBGCP2-203 | hsa-miR-1273h-3p | chr10 | 133278678 | 133278684 | 7mer-m8 | 133278677 | 133278698 | 140 | -17.58 |
| ADediting_527135 | chr16_24203190_+ | ENSG00000130640.13 | ENST00000417178.6 | TUBGCP2-204 | hsa-miR-1273h-3p | chr10 | 133278678 | 133278684 | 7mer-m8 | 133278677 | 133278698 | 140 | -17.58 |
| ADediting_527135 | chr16_24203190_+ | ENSG00000130640.13 | ENST00000543663.5 | TUBGCP2-210 | hsa-miR-1273h-3p | chr10 | 133278678 | 133278684 | 7mer-m8 | 133278677 | 133278698 | 140 | -17.58 |
| Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for TUBGCP2 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000543663.5 | protein_coding |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_177140 | ENST00000543663.5 | chr10_133297322_- | 1072 | -1771.50 | -1771.50 | -1778.90 |
| ADediting_177141 | ENST00000543663.5 | chr10_133297335_- | 1059 | -1771.70 | -1771.50 | -1778.90 |
| ADediting_177142 | ENST00000543663.5 | chr10_133297336_- | 1058 | -1770.80 | -1771.50 | -1778.90 |
| ADediting_177143 | ENST00000543663.5 | chr10_133297351_- | 1043 | -1771.50 | -1771.50 | -1778.90 |
| ADediting_1522923 | ENST00000543663.5 | chr10_133297360_- | 1034 | -1771.00 | -1771.50 | -1778.90 |
| ADediting_177144 | ENST00000543663.5 | chr10_133297389_- | 1005 | -1772.80 | -1771.50 | -1778.90 |
| ADediting_177145 | ENST00000543663.5 | chr10_133297396_- | 998 | -1770.70 | -1771.50 | -1778.90 |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for TUBGCP2 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| TCX | ADediting_177066 | chr10_133294700_- | 0.0713618267483614 | 0.147655176389753 | 0.91088472250125 | -0.00921534446120348 | 9.38845715779192e-05 | 0.313460132169745 |
| CER | ADediting_177068 | chr10_133294732_- | 4.97088672220809e-06 | 0.363049802830848 | 0.000552373203507367 | 0.278737737507121 | 0.0717681576325606 | 0.147446059410086 |
| TCX | ADediting_177082 | chr10_133295370_- | 0.810214542400767 | 0.0197715871119036 | 0.0987343837667244 | -0.135316483167444 | 1.23441726425669e-05 | 0.34858077447025 |
| DLPFC | ADediting_177095 | chr10_133296569_- | 0.108500918287041 | 0.0913343862800979 | 0.829825238856408 | 0.01225601293379 | 2.92813490853298e-08 | 0.308503941822395 |
| DLPFC | ADediting_177097 | chr10_133296580_- | 0.0309934858791735 | 0.122551148649591 | 0.74115933169167 | 0.0188352543117554 | 7.44110999731007e-15 | 0.422538384923021 |
| DLPFC | ADediting_177110 | chr10_133296660_- | 3.93485281671933e-09 | 0.326467431056119 | 3.18973525755958e-07 | 0.285426265336428 | 4.89297906937627e-06 | 0.256210551232397 |
| CER | ADediting_177110 | chr10_133296660_- | 7.30828111235688e-05 | 0.318035893399896 | 0.0159496465903149 | 0.196502366770703 | 0.329609372442035 | 0.080142638423864 |
| TCX | ADediting_177110 | chr10_133296660_- | 0.115352612916432 | 0.129105570334817 | 0.581554173146872 | -0.0453546777329569 | 6.42013558165105e-05 | 0.320374249233138 |
| CER | ADediting_177115 | chr10_133296736_- | 9.82217975489971e-05 | 0.312627144888601 | 0.000908349181909268 | 0.268136101223438 | 0.103429827023677 | 0.133483198126166 |
| DLPFC | ADediting_177119 | chr10_133296755_- | 5.36088025332858e-10 | 0.343218228657446 | 3.54878829142496e-08 | 0.30671904095072 | 1.10557425612989e-05 | 0.246768782155118 |
| DLPFC | ADediting_177120 | chr10_133296767_- | 3.79494730694725e-08 | 0.306093553344815 | 9.88863998236322e-09 | 0.318366846160714 | 0.00122867525977204 | 0.182762878353961 |
| DLPFC | ADediting_177121 | chr10_133296771_- | 8.57187172689207e-10 | 0.339363481490727 | 8.60579188845289e-09 | 0.319603766469746 | 0.000977776939656701 | 0.186358038779537 |
| CER | ADediting_177121 | chr10_133296771_- | 0.000137239621438927 | 0.306379413899923 | 0.0293620553273028 | 0.177947641100206 | 0.773058372697074 | 0.0237411482793868 |
| CER | ADediting_177123 | chr10_133297139_- | 5.45810019709047e-06 | 0.361594593003993 | 0.00159560670819291 | 0.255587468362331 | 0.463388940114053 | 0.0603219613880777 |
| CER | ADediting_177124 | chr10_133297145_- | 2.88174512528913e-07 | 0.404301595132817 | 0.000179373202821445 | 0.301276000107996 | 0.297635683792962 | 0.0855993867646431 |
| DLPFC | ADediting_177129 | chr10_133297236_- | 5.26873899769973e-06 | 0.255368704507283 | 0.00678269432366455 | 0.153473961541744 | 1.70507639345471e-08 | 0.313461993168003 |
| CER | ADediting_177134 | chr10_133297286_- | 8.6158447460716e-05 | 0.315037348280024 | 0.00341570263960391 | 0.237593828534727 | 0.548993651988475 | 0.0493128344208582 |
| CER | ADediting_177136 | chr10_133297290_- | 0.000135718338613691 | 0.306589870348752 | 0.0295918609369189 | 0.177700057588229 | 0.458864831137959 | 0.0609328229914235 |
| TCX | ADediting_177137 | chr10_133297298_- | 0.000978021022965202 | 0.266524032584582 | 0.562787759976099 | 0.0476226878936414 | 2.9033086622191e-05 | 0.334293558570967 |
| CER | ADediting_177139 | chr10_133297316_- | 2.23689677826101e-05 | 0.33872436375667 | 0.00591631410863363 | 0.223746477953104 | 0.4880617731434 | -0.0570465470220931 |
| CER | ADediting_177141 | chr10_133297335_- | 3.48298926340697e-05 | 0.33115968064102 | 0.0106701368939043 | 0.207933351337869 | 0.870763555572135 | 0.0133949346921633 |
| TCX | ADediting_177141 | chr10_133297335_- | 0.000106610330982333 | 0.311109265778181 | 0.33089569503527 | 0.0799304344021844 | 0.000637541250704064 | 0.27572457723284 |
| TCX | ADediting_177144 | chr10_133297389_- | 2.17904051565454e-05 | 0.339165915802378 | 0.420490755476831 | 0.0662564743152132 | 0.000215691822515854 | 0.297706109918158 |
| DLPFC | ADediting_177178 | chr10_133300553_- | 1.20203677505331e-07 | 0.295103380548724 | 2.51408117182619e-08 | 0.309911069884087 | 0.00647021966687146 | 0.154348768937977 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 1.2256151538428e-10 | 0.355006305362035 | 8.20553731835643e-17 | 0.449360251094302 | 1.28429738570176e-19 | 0.484096104864247 |
| AC | 3.38763510955851e-54 | 0.788160405107809 | 1.25653588818566e-48 | 0.761603094900611 | 8.00328669434785e-15 | 0.465111153780852 |
| PCC | 8.83479254695936e-17 | 0.554341846235843 | 1.16954868494146e-22 | 0.631605879647006 | 0.0352788028903799 | 0.152432170418186 |
| TCX | 0.00359953401639536 | 0.23630567424146 | 4.79642324353973e-06 | 0.363603972161272 | 0.974305203781302 | 0.00265205289134646 |
| FP | 1.28450936751874e-26 | 0.691203508277186 | 6.38759868027246e-34 | 0.753783076252406 | 0.0102509778479269 | 0.191982471071612 |
| IFG | 2.51987929851537e-06 | 0.790963224032906 | 8.32568808296233e-07 | 0.811976519414266 | 0.937971415451157 | -0.0164027188794214 |
| PG | 1.08493447285131e-13 | 0.509704287175173 | 3.91124556945562e-16 | 0.55058121260293 | 0.872849569646218 | 0.0118139335709957 |
| STG | 7.23489800175671e-18 | 0.772808409464368 | 1.26125604250728e-18 | 0.783522576783452 | 0.728592026914791 | 0.0384224325164335 |
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Relation with AD stages for TUBGCP2 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| DLPFC | ADediting_177178 | chr10_133300553_- | 3.3399093446674e-09 | -0.327883756841812 |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
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RelatedDrugs for TUBGCP2 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TUBGCP2 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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