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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for LINC01772 |
 Gene summary |
| Gene information | Gene symbol | LINC01772 | Gene ID | 107984921 |
| Gene name | long intergenic non-protein coding RNA 1772 | |
| Synonyms | - | |
| Cytomap | 1p36.13 | |
| Type of gene | ncRNA | |
| Description | - | |
| Modification date | 20200303 | |
| UniProtAcc | ||
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for LINC01772 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_40183(16460977, +), ADediting_40184(16461011, +), ADediting_40185(16461016, +), ADediting_40186(16461066, +), ADediting_40188(16461433, +), ADediting_40189(16461435, +), ADediting_40190(16461436, +), ADediting_40191(16461490, +), ADediting_40192(16461492, +), ADediting_40193(16461495, +), ADediting_40194(16461515, +), ADediting_40195(16461550, +), ADediting_40196(16461568, +), ADediting_40197(16461569, +), ADediting_40198(16461574, +), ADediting_40199(16461578, +), ADediting_40200(16461586, +), ADediting_40201(16461626, +), ADediting_40202(16461690, +), ADediting_40243(16463038, +), ADediting_40244(16463048, +), ADediting_40245(16463056, +), ADediting_40246(16463086, +), ADediting_40247(16463087, +), ADediting_40248(16463090, +), ADediting_40249(16463115, +), ADediting_40250(16463167, +), ADediting_40251(16463170, +), ADediting_40252(16463249, +), ADediting_40253(16463250, +), ADediting_40254(16463698, +), ADediting_40255(16463724, +), ADediting_40256(16463760, +), ADediting_40257(16463823, +), ADediting_40320(16465420, +), ADediting_40321(16465436, +), ADediting_40322(16465490, +), ADediting_40323(16465500, +), ADediting_40324(16465526, +), ADediting_40374(16466445, +), ADediting_40375(16466536, +), ADediting_40377(16466542, +), ADediting_40378(16466564, +), ADediting_40379(16466587, +), ADediting_40380(16466622, +), ADediting_40381(16466628, +), ADediting_40382(16466651, +), ADediting_40383(16467065, +), ADediting_40384(16467075, +), ADediting_1516115(16460980, +), ADediting_1516116(16461481, +), ADediting_1516117(16461542, +), ADediting_1516118(16461546, +), ADediting_1516119(16463127, +), ADediting_1516120(16463665, +), ADediting_1516121(16463725, +), ADediting_1516122(16464738, +), ADediting_1516123(16466451, +), ADediting_1516124(16466619, +), ADediting_1516125(16466690, +), |
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RNA editing positional annotations for LINC01772 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_40183 | chr1_16460977_+ | ncRNA_exonic |
| ADediting_40184 | chr1_16461011_+ | ncRNA_exonic |
| ADediting_40185 | chr1_16461016_+ | ncRNA_exonic |
| ADediting_40186 | chr1_16461066_+ | ncRNA_exonic |
| ADediting_40188 | chr1_16461433_+ | ncRNA_exonic |
| ADediting_40189 | chr1_16461435_+ | ncRNA_exonic |
| ADediting_40190 | chr1_16461436_+ | ncRNA_exonic |
| ADediting_40191 | chr1_16461490_+ | ncRNA_exonic |
| ADediting_40192 | chr1_16461492_+ | ncRNA_exonic |
| ADediting_40193 | chr1_16461495_+ | ncRNA_exonic |
| ADediting_40194 | chr1_16461515_+ | ncRNA_exonic |
| ADediting_40195 | chr1_16461550_+ | ncRNA_exonic |
| ADediting_40196 | chr1_16461568_+ | ncRNA_exonic |
| ADediting_40197 | chr1_16461569_+ | ncRNA_exonic |
| ADediting_40198 | chr1_16461574_+ | ncRNA_exonic |
| ADediting_40199 | chr1_16461578_+ | ncRNA_exonic |
| ADediting_40200 | chr1_16461586_+ | ncRNA_exonic |
| ADediting_40201 | chr1_16461626_+ | ncRNA_exonic |
| ADediting_40202 | chr1_16461690_+ | ncRNA_exonic |
| ADediting_40243 | chr1_16463038_+ | ncRNA_exonic |
| ADediting_40244 | chr1_16463048_+ | ncRNA_exonic |
| ADediting_40245 | chr1_16463056_+ | ncRNA_exonic |
| ADediting_40246 | chr1_16463086_+ | ncRNA_exonic |
| ADediting_40247 | chr1_16463087_+ | ncRNA_exonic |
| ADediting_40248 | chr1_16463090_+ | ncRNA_exonic |
| ADediting_40249 | chr1_16463115_+ | ncRNA_exonic |
| ADediting_40250 | chr1_16463167_+ | ncRNA_exonic |
| ADediting_40251 | chr1_16463170_+ | ncRNA_exonic |
| ADediting_40252 | chr1_16463249_+ | ncRNA_exonic |
| ADediting_40253 | chr1_16463250_+ | ncRNA_exonic |
| ADediting_40254 | chr1_16463698_+ | ncRNA_intronic |
| ADediting_40255 | chr1_16463724_+ | ncRNA_intronic |
| ADediting_40256 | chr1_16463760_+ | ncRNA_intronic |
| ADediting_40257 | chr1_16463823_+ | ncRNA_intronic |
| ADediting_40320 | chr1_16465420_+ | ncRNA_intronic |
| ADediting_40321 | chr1_16465436_+ | ncRNA_intronic |
| ADediting_40322 | chr1_16465490_+ | ncRNA_intronic |
| ADediting_40323 | chr1_16465500_+ | ncRNA_intronic |
| ADediting_40324 | chr1_16465526_+ | ncRNA_intronic |
| ADediting_40374 | chr1_16466445_+ | ncRNA_intronic |
| ADediting_40375 | chr1_16466536_+ | ncRNA_intronic |
| ADediting_40377 | chr1_16466542_+ | ncRNA_intronic |
| ADediting_40378 | chr1_16466564_+ | ncRNA_intronic |
| ADediting_40379 | chr1_16466587_+ | ncRNA_intronic |
| ADediting_40380 | chr1_16466622_+ | ncRNA_intronic |
| ADediting_40381 | chr1_16466628_+ | ncRNA_intronic |
| ADediting_40382 | chr1_16466651_+ | ncRNA_intronic |
| ADediting_40383 | chr1_16467065_+ | ncRNA_intronic |
| ADediting_40384 | chr1_16467075_+ | ncRNA_intronic |
| ADediting_1516115 | chr1_16460980_+ | ncRNA_exonic |
| ADediting_1516116 | chr1_16461481_+ | ncRNA_exonic |
| ADediting_1516117 | chr1_16461542_+ | ncRNA_exonic |
| ADediting_1516118 | chr1_16461546_+ | ncRNA_exonic |
| ADediting_1516119 | chr1_16463127_+ | ncRNA_exonic |
| ADediting_1516120 | chr1_16463665_+ | ncRNA_intronic |
| ADediting_1516121 | chr1_16463725_+ | ncRNA_intronic |
| ADediting_1516122 | chr1_16464738_+ | ncRNA_intronic |
| ADediting_1516123 | chr1_16466451_+ | ncRNA_intronic |
| ADediting_1516124 | chr1_16466619_+ | ncRNA_intronic |
| ADediting_1516125 | chr1_16466690_+ | ncRNA_intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_40183 | chr1_16460977_+ | SINE | Alu | Name=AluJr |
| ADediting_40184 | chr1_16461011_+ | SINE | Alu | Name=AluJr |
| ADediting_40185 | chr1_16461016_+ | SINE | Alu | Name=AluJr |
| ADediting_40186 | chr1_16461066_+ | SINE | Alu | Name=AluJr |
| ADediting_40188 | chr1_16461433_+ | SINE | Alu | Name=AluSz |
| ADediting_40189 | chr1_16461435_+ | SINE | Alu | Name=AluSz |
| ADediting_40190 | chr1_16461436_+ | SINE | Alu | Name=AluSz |
| ADediting_40191 | chr1_16461490_+ | SINE | Alu | Name=AluSz |
| ADediting_40192 | chr1_16461492_+ | SINE | Alu | Name=AluSz |
| ADediting_40193 | chr1_16461495_+ | SINE | Alu | Name=AluSz |
| ADediting_40194 | chr1_16461515_+ | SINE | Alu | Name=AluSz |
| ADediting_40195 | chr1_16461550_+ | SINE | Alu | Name=AluSz |
| ADediting_40196 | chr1_16461568_+ | SINE | Alu | Name=AluSz |
| ADediting_40197 | chr1_16461569_+ | SINE | Alu | Name=AluSz |
| ADediting_40198 | chr1_16461574_+ | SINE | Alu | Name=AluSz |
| ADediting_40199 | chr1_16461578_+ | SINE | Alu | Name=AluSz |
| ADediting_40200 | chr1_16461586_+ | SINE | Alu | Name=AluSz |
| ADediting_40201 | chr1_16461626_+ | SINE | Alu | Name=AluSz |
| ADediting_40202 | chr1_16461690_+ | SINE | Alu | Name=AluSz |
| ADediting_40243 | chr1_16463038_+ | SINE | Alu | Name=AluSz |
| ADediting_40244 | chr1_16463048_+ | SINE | Alu | Name=AluSz |
| ADediting_40245 | chr1_16463056_+ | SINE | Alu | Name=AluSz |
| ADediting_40246 | chr1_16463086_+ | SINE | Alu | Name=AluSz |
| ADediting_40247 | chr1_16463087_+ | SINE | Alu | Name=AluSz |
| ADediting_40248 | chr1_16463090_+ | SINE | Alu | Name=AluSz |
| ADediting_40249 | chr1_16463115_+ | SINE | Alu | Name=AluSz |
| ADediting_40250 | chr1_16463167_+ | SINE | Alu | Name=AluSz |
| ADediting_40251 | chr1_16463170_+ | SINE | Alu | Name=AluSz |
| ADediting_40252 | chr1_16463249_+ | SINE | Alu | Name=AluSz |
| ADediting_40253 | chr1_16463250_+ | SINE | Alu | Name=AluSz |
| ADediting_40254 | chr1_16463698_+ | SINE | Alu | Name=AluSq |
| ADediting_40255 | chr1_16463724_+ | SINE | Alu | Name=AluSq |
| ADediting_40256 | chr1_16463760_+ | SINE | Alu | Name=AluSq |
| ADediting_40257 | chr1_16463823_+ | SINE | Alu | Name=AluSq |
| ADediting_40320 | chr1_16465420_+ | SINE | Alu | Name=AluSc |
| ADediting_40321 | chr1_16465436_+ | SINE | Alu | Name=AluSc |
| ADediting_40322 | chr1_16465490_+ | SINE | Alu | Name=AluSc |
| ADediting_40323 | chr1_16465500_+ | SINE | Alu | Name=AluSc |
| ADediting_40324 | chr1_16465526_+ | SINE | Alu | Name=AluSc |
| ADediting_40374 | chr1_16466445_+ | SINE | Alu | Name=AluSq2 |
| ADediting_40375 | chr1_16466536_+ | SINE | Alu | Name=AluSq2 |
| ADediting_40377 | chr1_16466542_+ | SINE | Alu | Name=AluSq2 |
| ADediting_40378 | chr1_16466564_+ | SINE | Alu | Name=AluSq2 |
| ADediting_40379 | chr1_16466587_+ | SINE | Alu | Name=AluSq2 |
| ADediting_40380 | chr1_16466622_+ | SINE | Alu | Name=AluSq2 |
| ADediting_40381 | chr1_16466628_+ | SINE | Alu | Name=AluSq2 |
| ADediting_40382 | chr1_16466651_+ | SINE | Alu | Name=AluSq2 |
| ADediting_40383 | chr1_16467065_+ | SINE | Alu | Name=AluJo |
| ADediting_40384 | chr1_16467075_+ | SINE | Alu | Name=AluJo |
| ADediting_1516115 | chr1_16460980_+ | SINE | Alu | Name=AluJr |
| ADediting_1516116 | chr1_16461481_+ | SINE | Alu | Name=AluSz |
| ADediting_1516117 | chr1_16461542_+ | SINE | Alu | Name=AluSz |
| ADediting_1516118 | chr1_16461546_+ | SINE | Alu | Name=AluSz |
| ADediting_1516119 | chr1_16463127_+ | SINE | Alu | Name=AluSz |
| ADediting_1516120 | chr1_16463665_+ | SINE | Alu | Name=AluSq |
| ADediting_1516121 | chr1_16463725_+ | SINE | Alu | Name=AluSq |
| ADediting_1516122 | chr1_16464738_+ | SINE | Alu | Name=AluSq2 |
| ADediting_1516123 | chr1_16466451_+ | SINE | Alu | Name=AluSq2 |
| ADediting_1516124 | chr1_16466619_+ | SINE | Alu | Name=AluSq2 |
| ADediting_1516125 | chr1_16466690_+ | SINE | Alu | Name=AluSq2 |
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RNA A-to-I editing events in the alternative splicing sites for LINC01772 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for LINC01772 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for LINC01772 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for LINC01772 |
| RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1516116 | chr1_16461481_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-150-5p | chr1 | 16461479 | 16461485 | 7mer-m8 | 16461462 | 16461486 | 157 | -24.84 |
| ADediting_1516117 | chr1_16461542_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-3190-5p | chr1 | 16461541 | 16461547 | 7mer-m8 | 16461529 | 16461548 | 143 | -16.24 |
| ADediting_1516117 | chr1_16461542_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-548s | chr1 | 16461540 | 16461546 | 7mer-m8 | 16461525 | 16461547 | 145 | -13.11 |
| ADediting_40184 | chr1_16461011_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-3136-3p | chr1 | 16461008 | 16461014 | 7mer-m8 | 16460994 | 16461015 | 160 | -16.01 |
| ADediting_40184 | chr1_16461011_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-6724-5p | chr1 | 16461010 | 16461016 | 7mer-m8 | 16460996 | 16461017 | 145 | -25.95 |
| ADediting_40184 | chr1_16461011_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-6773-5p | chr1 | 16461010 | 16461016 | 7mer-m8 | 16460994 | 16461017 | 153 | -23.03 |
| ADediting_40184 | chr1_16461011_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-7155-3p | chr1 | 16461008 | 16461014 | 7mer-m8 | 16460997 | 16461015 | 145 | -18.68 |
| ADediting_40186 | chr1_16461066_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4494 | chr1 | 16461060 | 16461066 | 7mer-m8 | 16461048 | 16461067 | 147 | -26.56 |
| ADediting_40189 | chr1_16461435_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-3677-3p | chr1 | 16461430 | 16461436 | 7mer-m8 | 16461416 | 16461437 | 162 | -28.46 |
| ADediting_40189 | chr1_16461435_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-638 | chr1 | 16461434 | 16461441 | 8mer-1a | 16461417 | 16461441 | 167 | -33.36 |
| ADediting_40190 | chr1_16461436_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-134-3p | chr1 | 16461430 | 16461436 | 7mer-m8 | 16461417 | 16461437 | 157 | -27.9 |
| ADediting_40190 | chr1_16461436_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-3199 | chr1 | 16461434 | 16461441 | 8mer-1a | 16461419 | 16461441 | 140 | -17.13 |
| ADediting_40190 | chr1_16461436_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4318 | chr1 | 16461431 | 16461437 | 7mer-m8 | 16461424 | 16461438 | 152 | -18.13 |
| ADediting_40190 | chr1_16461436_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-8052 | chr1 | 16461434 | 16461441 | 8mer-1a | 16461423 | 16461441 | 168 | -33.6 |
| ADediting_40191 | chr1_16461490_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4281 | chr1 | 16461488 | 16461495 | 8mer-1a | 16461478 | 16461495 | 142 | -18.84 |
| ADediting_40191 | chr1_16461490_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-6716-3p | chr1 | 16461484 | 16461490 | 7mer-m8 | 16461472 | 16461491 | 152 | -22.7 |
| ADediting_40192 | chr1_16461492_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-3176 | chr1 | 16461490 | 16461496 | 7mer-m8 | 16461479 | 16461497 | 160 | -25.03 |
| ADediting_40192 | chr1_16461492_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-3922-3p | chr1 | 16461490 | 16461496 | 7mer-m8 | 16461473 | 16461497 | 157 | -25.64 |
| ADediting_40192 | chr1_16461492_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-6878-3p | chr1 | 16461489 | 16461495 | 7mer-m8 | 16461474 | 16461496 | 150 | -26.93 |
| ADediting_40194 | chr1_16461515_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4508 | chr1 | 16461514 | 16461520 | 7mer-m8 | 16461505 | 16461521 | 140 | -21.85 |
| ADediting_40194 | chr1_16461515_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-6754-3p | chr1 | 16461509 | 16461515 | 7mer-m8 | 16461492 | 16461516 | 150 | -19.85 |
| ADediting_40196 | chr1_16461568_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-513a-5p | chr1 | 16461563 | 16461569 | 7mer-m8 | 16461553 | 16461570 | 148 | -20.6 |
| ADediting_40196 | chr1_16461568_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-638 | chr1 | 16461568 | 16461574 | 7mer-1a | 16461550 | 16461574 | 163 | -36.29 |
| ADediting_40199 | chr1_16461578_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-1207-3p | chr1 | 16461572 | 16461578 | 7mer-m8 | 16461562 | 16461579 | 140 | -12.56 |
| ADediting_40199 | chr1_16461578_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-646 | chr1 | 16461574 | 16461580 | 7mer-m8 | 16461563 | 16461581 | 145 | -16.24 |
| ADediting_40200 | chr1_16461586_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-6819-3p | chr1 | 16461583 | 16461589 | 7mer-m8 | 16461570 | 16461590 | 140 | -11.01 |
| ADediting_40200 | chr1_16461586_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-6877-3p | chr1 | 16461583 | 16461589 | 7mer-m8 | 16461571 | 16461590 | 143 | -18.19 |
| ADediting_40243 | chr1_16463038_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4793-3p | chr1 | 16463037 | 16463043 | 7mer-m8 | 16463022 | 16463044 | 149 | -19.53 |
| ADediting_40243 | chr1_16463038_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-508-5p | chr1 | 16463033 | 16463039 | 7mer-m8 | 16463018 | 16463040 | 154 | -24.96 |
| ADediting_40243 | chr1_16463038_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-766-3p | chr1 | 16463032 | 16463038 | 7mer-m8 | 16463014 | 16463039 | 154 | -27.76 |
| ADediting_40243 | chr1_16463038_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-7703 | chr1 | 16463036 | 16463042 | 7mer-m8 | 16463020 | 16463043 | 164 | -32.02 |
| ADediting_40245 | chr1_16463056_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4537 | chr1 | 16463054 | 16463061 | 8mer-1a | 16463039 | 16463061 | 151 | -24.3 |
| ADediting_40253 | chr1_16463250_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-383-3p | chr1 | 16463249 | 16463255 | 7mer-m8 | 16463238 | 16463256 | 140 | -17.78 |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1516115 | chr1_16460980_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-5697 | chr1 | 16460978 | 16460984 | 7mer-m8 | 16460966 | 16460985 | 154 | -12.61 |
| ADediting_1516117 | chr1_16461542_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4794 | chr1 | 16461541 | 16461547 | 7mer-m8 | 16461527 | 16461548 | 140 | -12.56 |
| ADediting_1516117 | chr1_16461542_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-664a-5p | chr1 | 16461541 | 16461547 | 7mer-m8 | 16461525 | 16461548 | 141 | -13.74 |
| ADediting_1516118 | chr1_16461546_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4794 | chr1 | 16461541 | 16461547 | 7mer-m8 | 16461527 | 16461548 | 140 | -12.56 |
| ADediting_1516118 | chr1_16461546_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-664a-5p | chr1 | 16461541 | 16461547 | 7mer-m8 | 16461525 | 16461548 | 141 | -13.74 |
| ADediting_1516119 | chr1_16463127_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-3686 | chr1 | 16463123 | 16463129 | 7mer-m8 | 16463109 | 16463130 | 149 | -10.05 |
| ADediting_40183 | chr1_16460977_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-1258 | chr1 | 16460972 | 16460978 | 7mer-m8 | 16460958 | 16460979 | 155 | -19.76 |
| ADediting_40183 | chr1_16460977_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-651-5p | chr1 | 16460971 | 16460977 | 7mer-m8 | 16460953 | 16460978 | 152 | -12.4 |
| ADediting_40184 | chr1_16461011_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-10400-3p | chr1 | 16461010 | 16461016 | 7mer-m8 | 16460996 | 16461017 | 141 | -20.93 |
| ADediting_40184 | chr1_16461011_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4437 | chr1 | 16461009 | 16461016 | 8mer-1a | 16460996 | 16461016 | 146 | -19.59 |
| ADediting_40184 | chr1_16461011_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4674 | chr1 | 16461010 | 16461016 | 7mer-m8 | 16460997 | 16461017 | 147 | -22.89 |
| ADediting_40185 | chr1_16461016_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-10400-3p | chr1 | 16461010 | 16461016 | 7mer-m8 | 16460996 | 16461017 | 141 | -20.93 |
| ADediting_40185 | chr1_16461016_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-1343-3p | chr1 | 16461013 | 16461019 | 7mer-m8 | 16460997 | 16461020 | 150 | -26.74 |
| ADediting_40185 | chr1_16461016_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4674 | chr1 | 16461010 | 16461016 | 7mer-m8 | 16460997 | 16461017 | 147 | -22.89 |
| ADediting_40185 | chr1_16461016_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-6783-3p | chr1 | 16461013 | 16461019 | 7mer-m8 | 16460999 | 16461020 | 151 | -21.15 |
| ADediting_40185 | chr1_16461016_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-939-3p | chr1 | 16461012 | 16461019 | 8mer-1a | 16460999 | 16461019 | 142 | -16.64 |
| ADediting_40186 | chr1_16461066_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-151a-3p | chr1 | 16461060 | 16461066 | 7mer-m8 | 16461047 | 16461067 | 147 | -22.69 |
| ADediting_40186 | chr1_16461066_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-3135a | chr1 | 16461064 | 16461070 | 7mer-1a | 16461049 | 16461070 | 153 | -27.35 |
| ADediting_40188 | chr1_16461433_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4265 | chr1 | 16461429 | 16461436 | 8mer-1a | 16461417 | 16461436 | 149 | -16.12 |
| ADediting_40188 | chr1_16461433_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4296 | chr1 | 16461429 | 16461436 | 8mer-1a | 16461419 | 16461436 | 145 | -16.09 |
| ADediting_40188 | chr1_16461433_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4322 | chr1 | 16461429 | 16461436 | 8mer-1a | 16461415 | 16461436 | 148 | -19.42 |
| ADediting_40189 | chr1_16461435_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4265 | chr1 | 16461429 | 16461436 | 8mer-1a | 16461417 | 16461436 | 149 | -16.12 |
| ADediting_40189 | chr1_16461435_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4296 | chr1 | 16461429 | 16461436 | 8mer-1a | 16461419 | 16461436 | 145 | -16.09 |
| ADediting_40189 | chr1_16461435_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4322 | chr1 | 16461429 | 16461436 | 8mer-1a | 16461415 | 16461436 | 148 | -19.42 |
| ADediting_40190 | chr1_16461436_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-5089-5p | chr1 | 16461435 | 16461441 | 7mer-m8 | 16461423 | 16461442 | 146 | -13.64 |
| ADediting_40191 | chr1_16461490_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-6843-3p | chr1 | 16461489 | 16461495 | 7mer-m8 | 16461477 | 16461496 | 148 | -16.96 |
| ADediting_40191 | chr1_16461490_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-6848-3p | chr1 | 16461489 | 16461495 | 7mer-m8 | 16461479 | 16461496 | 142 | -14.3 |
| ADediting_40192 | chr1_16461492_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-3663-5p | chr1 | 16461490 | 16461496 | 7mer-m8 | 16461478 | 16461497 | 148 | -21.98 |
| ADediting_40192 | chr1_16461492_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-6131 | chr1 | 16461491 | 16461497 | 7mer-m8 | 16461480 | 16461498 | 140 | -18.33 |
| ADediting_40192 | chr1_16461492_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-6843-3p | chr1 | 16461489 | 16461495 | 7mer-m8 | 16461477 | 16461496 | 148 | -16.96 |
| ADediting_40192 | chr1_16461492_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-6848-3p | chr1 | 16461489 | 16461495 | 7mer-m8 | 16461479 | 16461496 | 142 | -14.3 |
| ADediting_40193 | chr1_16461495_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-3663-5p | chr1 | 16461490 | 16461496 | 7mer-m8 | 16461478 | 16461497 | 148 | -21.98 |
| ADediting_40193 | chr1_16461495_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-6131 | chr1 | 16461491 | 16461497 | 7mer-m8 | 16461480 | 16461498 | 140 | -18.33 |
| ADediting_40193 | chr1_16461495_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-6843-3p | chr1 | 16461489 | 16461495 | 7mer-m8 | 16461477 | 16461496 | 148 | -16.96 |
| ADediting_40193 | chr1_16461495_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-6848-3p | chr1 | 16461489 | 16461495 | 7mer-m8 | 16461479 | 16461496 | 142 | -14.3 |
| ADediting_40194 | chr1_16461515_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-193b-5p | chr1 | 16461513 | 16461519 | 7mer-m8 | 16461499 | 16461520 | 142 | -18.57 |
| ADediting_40195 | chr1_16461550_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-6872-3p | chr1 | 16461547 | 16461553 | 7mer-m8 | 16461534 | 16461554 | 145 | -14.39 |
| ADediting_40196 | chr1_16461568_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-10399-5p | chr1 | 16461564 | 16461570 | 7mer-m8 | 16461550 | 16461571 | 148 | -11.23 |
| ADediting_40196 | chr1_16461568_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-6504-3p | chr1 | 16461564 | 16461570 | 7mer-m8 | 16461552 | 16461571 | 140 | -13.14 |
| ADediting_40196 | chr1_16461568_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-7151-3p | chr1 | 16461562 | 16461569 | 8mer-1a | 16461548 | 16461569 | 141 | -14.2 |
| ADediting_40197 | chr1_16461569_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-10399-5p | chr1 | 16461564 | 16461570 | 7mer-m8 | 16461550 | 16461571 | 148 | -11.23 |
| ADediting_40197 | chr1_16461569_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-5089-5p | chr1 | 16461568 | 16461574 | 7mer-m8 | 16461555 | 16461575 | 144 | -12.58 |
| ADediting_40197 | chr1_16461569_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-6504-3p | chr1 | 16461564 | 16461570 | 7mer-m8 | 16461552 | 16461571 | 140 | -13.14 |
| ADediting_40198 | chr1_16461574_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-5089-5p | chr1 | 16461568 | 16461574 | 7mer-m8 | 16461555 | 16461575 | 144 | -12.58 |
| ADediting_40198 | chr1_16461574_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-6506-5p | chr1 | 16461569 | 16461575 | 7mer-m8 | 16461554 | 16461576 | 144 | -15.62 |
| ADediting_40199 | chr1_16461578_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-1297 | chr1 | 16461577 | 16461583 | 7mer-m8 | 16461568 | 16461584 | 143 | -11.65 |
| ADediting_40199 | chr1_16461578_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-26a-5p | chr1 | 16461577 | 16461583 | 7mer-m8 | 16461564 | 16461584 | 147 | -12.9 |
| ADediting_40199 | chr1_16461578_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-26b-5p | chr1 | 16461577 | 16461583 | 7mer-m8 | 16461565 | 16461584 | 151 | -14.08 |
| ADediting_40199 | chr1_16461578_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4465 | chr1 | 16461577 | 16461583 | 7mer-m8 | 16461564 | 16461584 | 151 | -20.68 |
| ADediting_40199 | chr1_16461578_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-562 | chr1 | 16461575 | 16461581 | 7mer-m8 | 16461563 | 16461582 | 150 | -12.74 |
| ADediting_40199 | chr1_16461578_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-5697 | chr1 | 16461576 | 16461583 | 8mer-1a | 16461561 | 16461583 | 149 | -18.66 |
| ADediting_40201 | chr1_16461626_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4772-3p | chr1 | 16461621 | 16461627 | 7mer-m8 | 16461607 | 16461628 | 151 | -18.37 |
| ADediting_40243 | chr1_16463038_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-20a-3p | chr1 | 16463037 | 16463043 | 7mer-m8 | 16463025 | 16463044 | 145 | -14.88 |
| ADediting_40245 | chr1_16463056_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-3160-3p | chr1 | 16463054 | 16463061 | 8mer-1a | 16463040 | 16463061 | 153 | -19.75 |
| ADediting_40249 | chr1_16463115_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-606 | chr1 | 16463112 | 16463118 | 7mer-m8 | 16463099 | 16463119 | 140 | -6.88 |
| ADediting_40253 | chr1_16463250_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4310 | chr1 | 16463249 | 16463255 | 7mer-m8 | 16463241 | 16463256 | 140 | -8.38 |
| ADediting_40253 | chr1_16463250_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-7157-5p | chr1 | 16463249 | 16463255 | 7mer-m8 | 16463234 | 16463256 | 148 | -18.06 |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1391023 | chr8_140732605_- | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-151a-3p | chr1 | 16462521 | 16462527 | 7mer-m8 | 16462509 | 16462528 | 153 | -21.37 |
| ADediting_1535951 | chr14_100874558_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-337-3p | chr1 | 16462050 | 16462056 | 7mer-m8 | 16462035 | 16462057 | 155 | -13.58 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-641 | chr1 | 16467778 | 16467784 | 7mer-1a | 16467759 | 16467784 | 148 | -23.48 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4775 | chr1 | 16467847 | 16467853 | 7mer-m8 | 16467831 | 16467854 | 144 | -8.34 |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1391023 | chr8_140732605_- | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-151a-3p | chr1 | 16461060 | 16461066 | 7mer-m8 | 16461047 | 16461067 | 147 | -22.69 |
| ADediting_527135 | chr16_24203190_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-1273h-3p | chr1 | 16462531 | 16462538 | 8mer-1a | 16462517 | 16462538 | 145 | -14.56 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000226029.1 | ENST00000457898.1 | LINC01772-201 | hsa-miR-4775 | chr1 | 16468032 | 16468038 | 7mer-m8 | 16468018 | 16468039 | 145 | -10.96 |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for LINC01772 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000457898.1 | lncRNA |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_40183 | ENST00000457898.1 | chr1_16460977_+ | 30 | -1240.40 | -1238.30 | -1268.80 |
| ADediting_1516115 | ENST00000457898.1 | chr1_16460980_+ | 33 | -1240.60 | -1238.30 | -1268.80 |
| ADediting_40184 | ENST00000457898.1 | chr1_16461011_+ | 64 | -1240.40 | -1238.30 | -1268.80 |
| ADediting_40185 | ENST00000457898.1 | chr1_16461016_+ | 69 | -1240.50 | -1238.30 | -1268.80 |
| ADediting_40186 | ENST00000457898.1 | chr1_16461066_+ | 119 | -1241.20 | -1238.30 | -1268.80 |
| ADediting_40188 | ENST00000457898.1 | chr1_16461433_+ | 486 | -1238.60 | -1238.30 | -1268.80 |
| ADediting_40189 | ENST00000457898.1 | chr1_16461435_+ | 488 | -1238.70 | -1238.30 | -1268.80 |
| ADediting_40190 | ENST00000457898.1 | chr1_16461436_+ | 489 | -1238.30 | -1238.30 | -1268.80 |
| ADediting_1516116 | ENST00000457898.1 | chr1_16461481_+ | 534 | -1237.00 | -1238.30 | -1268.80 |
| ADediting_40191 | ENST00000457898.1 | chr1_16461490_+ | 543 | -1237.40 | -1238.30 | -1268.80 |
| ADediting_40192 | ENST00000457898.1 | chr1_16461492_+ | 545 | -1237.70 | -1238.30 | -1268.80 |
| ADediting_40193 | ENST00000457898.1 | chr1_16461495_+ | 548 | -1237.60 | -1238.30 | -1268.80 |
| ADediting_40194 | ENST00000457898.1 | chr1_16461515_+ | 568 | -1238.30 | -1238.30 | -1268.80 |
| ADediting_1516117 | ENST00000457898.1 | chr1_16461542_+ | 595 | -1238.00 | -1238.30 | -1268.80 |
| ADediting_1516118 | ENST00000457898.1 | chr1_16461546_+ | 599 | -1244.10 | -1238.30 | -1268.80 |
| ADediting_40195 | ENST00000457898.1 | chr1_16461550_+ | 603 | -1241.90 | -1238.30 | -1268.80 |
| ADediting_40196 | ENST00000457898.1 | chr1_16461568_+ | 621 | -1238.40 | -1238.30 | -1268.80 |
| ADediting_40197 | ENST00000457898.1 | chr1_16461569_+ | 622 | -1238.30 | -1238.30 | -1268.80 |
| ADediting_40198 | ENST00000457898.1 | chr1_16461574_+ | 627 | -1237.50 | -1238.30 | -1268.80 |
| ADediting_40199 | ENST00000457898.1 | chr1_16461578_+ | 631 | -1238.30 | -1238.30 | -1268.80 |
| ADediting_40200 | ENST00000457898.1 | chr1_16461586_+ | 639 | -1244.90 | -1238.30 | -1268.80 |
| ADediting_40201 | ENST00000457898.1 | chr1_16461626_+ | 679 | -1237.60 | -1238.30 | -1268.80 |
| ADediting_40202 | ENST00000457898.1 | chr1_16461690_+ | 743 | -1238.70 | -1238.30 | -1268.80 |
| ADediting_40243 | ENST00000457898.1 | chr1_16463038_+ | 2091 | -1244.50 | -1238.30 | -1268.80 |
| ADediting_40244 | ENST00000457898.1 | chr1_16463048_+ | 2101 | -1237.90 | -1238.30 | -1268.80 |
| ADediting_40245 | ENST00000457898.1 | chr1_16463056_+ | 2109 | -1237.60 | -1238.30 | -1268.80 |
| ADediting_40246 | ENST00000457898.1 | chr1_16463086_+ | 2139 | -1238.80 | -1238.30 | -1268.80 |
| ADediting_40247 | ENST00000457898.1 | chr1_16463087_+ | 2140 | -1243.30 | -1238.30 | -1268.80 |
| ADediting_40248 | ENST00000457898.1 | chr1_16463090_+ | 2143 | -1237.50 | -1238.30 | -1268.80 |
| ADediting_40249 | ENST00000457898.1 | chr1_16463115_+ | 2168 | -1238.00 | -1238.30 | -1268.80 |
| ADediting_1516119 | ENST00000457898.1 | chr1_16463127_+ | 2180 | -1237.60 | -1238.30 | -1268.80 |
| ADediting_40250 | ENST00000457898.1 | chr1_16463167_+ | 2220 | -1238.00 | -1238.30 | -1268.80 |
| ADediting_40251 | ENST00000457898.1 | chr1_16463170_+ | 2223 | -1238.30 | -1238.30 | -1268.80 |
| ADediting_40252 | ENST00000457898.1 | chr1_16463249_+ | 2302 | -1238.00 | -1238.30 | -1268.80 |
| ADediting_40253 | ENST00000457898.1 | chr1_16463250_+ | 2303 | -1244.50 | -1238.30 | -1268.80 |
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Relation with ADAR for LINC01772 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| CER | ADediting_40245 | chr1_16463056_+ | 0.0235860416198158 | 0.184790007475758 | 0.000133769992430497 | 0.306862643598553 | 0.0249504512424837 | 0.183053902250375 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 0.000566602165046908 | 0.194692877171546 | 0.0790928146672493 | 0.0998865888332239 | 5.20255798676237e-46 | 0.694844404936665 |
| AC | 1.80148003968752e-06 | 0.296629202594402 | 2.02191028758553e-06 | 0.295247708025113 | 3.97663606129797e-13 | 0.437758131586641 |
| PCC | 0.0589529143428886 | 0.136904829793759 | 0.0866808681140565 | 0.124295535768522 | 4.47391159710933e-12 | 0.473712159642798 |
| CER | 1.38897319547409e-07 | 0.414031200803239 | 2.16613221451551e-05 | 0.339265936215668 | 0.569656559057609 | 0.046788487064447 |
| FP | 7.42490173907523e-09 | 0.416398067744435 | 0.000221630420523617 | 0.273433995979482 | 2.86171218744838e-12 | 0.492599983808399 |
| IFG | 0.152004430870685 | 0.295179799931424 | 0.0489376526617364 | 0.397767718904492 | 0.00337317977242724 | 0.563222323606634 |
| PG | 9.60229793172503e-11 | 0.451816440324059 | 5.21563254184232e-09 | 0.411839648530006 | 0.000717031722645894 | 0.24589042504271 |
| STG | 0.0807963378497716 | 0.19161492460143 | 0.426001109553179 | 0.0880064897240946 | 1.40910175341734e-07 | 0.536829375354693 |
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Relation with AD stages for LINC01772 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| TCX | 0.00102144507753918 | 0.314612615871884 |
| IFG | 0.0346839177324221 | 0.423954242308382 |
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RelatedDrugs for LINC01772 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for LINC01772 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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