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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for AHCYL1 |
 Gene summary |
| Gene information | Gene symbol | AHCYL1 | Gene ID | 10768 |
| Gene name | adenosylhomocysteinase like 1 | |
| Synonyms | DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA | |
| Cytomap | 1p13.3 | |
| Type of gene | protein-coding | |
| Description | S-adenosylhomocysteine hydrolase-like protein 1DC-expressed AHCY-like moleculeIP(3)Rs binding protein released with IP(3)S-adenosyl homocysteine hydrolase homologS-adenosyl-L-homocysteine hydrolase 2adenosylhomocysteinase 2adoHcyase 2dendritic cell | |
| Modification date | 20200313 | |
| UniProtAcc | O43865, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
| AHCYL1 | GO:0006378 | mRNA polyadenylation | 19224921 |
| AHCYL1 | GO:0031440 | regulation of mRNA 3'-end processing | 19224921 |
| AHCYL1 | GO:0038166 | angiotensin-activated signaling pathway | 20584908 |
| AHCYL1 | GO:0051592 | response to calcium ion | 18829453 |
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RNA A-to-I events for AHCYL1 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_6101(109989471, +), ADediting_6102(109992137, +), ADediting_6103(109992153, +), ADediting_6104(109992154, +), ADediting_6105(109992180, +), ADediting_6106(109992289, +), ADediting_6107(109994349, +), ADediting_6108(109994362, +), ADediting_6109(109994363, +), ADediting_6110(109994364, +), ADediting_6111(109994366, +), ADediting_6112(109994388, +), ADediting_6113(109994392, +), ADediting_6114(109994402, +), ADediting_6115(109994404, +), ADediting_6116(109994532, +), ADediting_6117(109994551, +), ADediting_6118(109995987, +), ADediting_6119(109995991, +), ADediting_6120(109995995, +), ADediting_6121(109996019, +), ADediting_6122(109996021, +), ADediting_6123(109996060, +), ADediting_6124(109996073, +), ADediting_6125(109996086, +), ADediting_6126(109996096, +), ADediting_6127(109996100, +), ADediting_6128(109996189, +), ADediting_6129(109998388, +), ADediting_6130(109998389, +), ADediting_6131(109998578, +), ADediting_6132(109998595, +), ADediting_6133(109998607, +), ADediting_6134(109998617, +), ADediting_6135(109998712, +), ADediting_6136(109998746, +), ADediting_6137(109998927, +), ADediting_6138(109998936, +), ADediting_6139(109998937, +), ADediting_6140(109998950, +), ADediting_6141(109998951, +), ADediting_6142(109998970, +), ADediting_6143(109999010, +), ADediting_6144(109999050, +), ADediting_6145(110004644, +), ADediting_6146(110004660, +), ADediting_6147(110004676, +), ADediting_6148(110004702, +), ADediting_6149(110008123, +), ADediting_6150(110008163, +), ADediting_6151(110008615, +), ADediting_6152(110013452, +), ADediting_6153(110013508, +), ADediting_6154(110013509, +), ADediting_6155(110013512, +), ADediting_6156(110013548, +), ADediting_6157(110013549, +), ADediting_6158(110013554, +), ADediting_6159(110013563, +), ADediting_6160(110013603, +), ADediting_6161(110013630, +), ADediting_6162(110013631, +), ADediting_6163(110013881, +), ADediting_6164(110013901, +), ADediting_6165(110013918, +), ADediting_1596000(110013962, +), ADediting_1596001(110013984, +), |
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RNA editing positional annotations for AHCYL1 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_6101 | chr1_109989471_+ | intronic |
| ADediting_6102 | chr1_109992137_+ | intronic |
| ADediting_6103 | chr1_109992153_+ | intronic |
| ADediting_6104 | chr1_109992154_+ | intronic |
| ADediting_6105 | chr1_109992180_+ | intronic |
| ADediting_6106 | chr1_109992289_+ | intronic |
| ADediting_6107 | chr1_109994349_+ | intronic |
| ADediting_6108 | chr1_109994362_+ | intronic |
| ADediting_6109 | chr1_109994363_+ | intronic |
| ADediting_6110 | chr1_109994364_+ | intronic |
| ADediting_6111 | chr1_109994366_+ | intronic |
| ADediting_6112 | chr1_109994388_+ | intronic |
| ADediting_6113 | chr1_109994392_+ | intronic |
| ADediting_6114 | chr1_109994402_+ | intronic |
| ADediting_6115 | chr1_109994404_+ | intronic |
| ADediting_6116 | chr1_109994532_+ | intronic |
| ADediting_6117 | chr1_109994551_+ | intronic |
| ADediting_6118 | chr1_109995987_+ | intronic |
| ADediting_6119 | chr1_109995991_+ | intronic |
| ADediting_6120 | chr1_109995995_+ | intronic |
| ADediting_6121 | chr1_109996019_+ | intronic |
| ADediting_6122 | chr1_109996021_+ | intronic |
| ADediting_6123 | chr1_109996060_+ | intronic |
| ADediting_6124 | chr1_109996073_+ | intronic |
| ADediting_6125 | chr1_109996086_+ | intronic |
| ADediting_6126 | chr1_109996096_+ | intronic |
| ADediting_6127 | chr1_109996100_+ | intronic |
| ADediting_6128 | chr1_109996189_+ | intronic |
| ADediting_6129 | chr1_109998388_+ | intronic |
| ADediting_6130 | chr1_109998389_+ | intronic |
| ADediting_6131 | chr1_109998578_+ | intronic |
| ADediting_6132 | chr1_109998595_+ | intronic |
| ADediting_6133 | chr1_109998607_+ | intronic |
| ADediting_6134 | chr1_109998617_+ | intronic |
| ADediting_6135 | chr1_109998712_+ | intronic |
| ADediting_6136 | chr1_109998746_+ | intronic |
| ADediting_6137 | chr1_109998927_+ | intronic |
| ADediting_6138 | chr1_109998936_+ | intronic |
| ADediting_6139 | chr1_109998937_+ | intronic |
| ADediting_6140 | chr1_109998950_+ | intronic |
| ADediting_6141 | chr1_109998951_+ | intronic |
| ADediting_6142 | chr1_109998970_+ | intronic |
| ADediting_6143 | chr1_109999010_+ | intronic |
| ADediting_6144 | chr1_109999050_+ | intronic |
| ADediting_6145 | chr1_110004644_+ | intronic |
| ADediting_6146 | chr1_110004660_+ | intronic |
| ADediting_6147 | chr1_110004676_+ | intronic |
| ADediting_6148 | chr1_110004702_+ | intronic |
| ADediting_6149 | chr1_110008123_+ | intronic |
| ADediting_6150 | chr1_110008163_+ | intronic |
| ADediting_6151 | chr1_110008615_+ | intronic |
| ADediting_6152 | chr1_110013452_+ | intronic |
| ADediting_6153 | chr1_110013508_+ | intronic |
| ADediting_6154 | chr1_110013509_+ | intronic |
| ADediting_6155 | chr1_110013512_+ | intronic |
| ADediting_6156 | chr1_110013548_+ | intronic |
| ADediting_6157 | chr1_110013549_+ | intronic |
| ADediting_6158 | chr1_110013554_+ | intronic |
| ADediting_6159 | chr1_110013563_+ | intronic |
| ADediting_6160 | chr1_110013603_+ | intronic |
| ADediting_6161 | chr1_110013630_+ | intronic |
| ADediting_6162 | chr1_110013631_+ | intronic |
| ADediting_6163 | chr1_110013881_+ | intronic |
| ADediting_6164 | chr1_110013901_+ | intronic |
| ADediting_6165 | chr1_110013918_+ | intronic |
| ADediting_1596000 | chr1_110013962_+ | intronic |
| ADediting_1596001 | chr1_110013984_+ | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_6101 | chr1_109989471_+ | SINE | Alu | Name=AluJo |
| ADediting_6102 | chr1_109992137_+ | SINE | Alu | Name=AluSc |
| ADediting_6103 | chr1_109992153_+ | SINE | Alu | Name=AluSc |
| ADediting_6104 | chr1_109992154_+ | SINE | Alu | Name=AluSc |
| ADediting_6105 | chr1_109992180_+ | SINE | Alu | Name=AluSc |
| ADediting_6106 | chr1_109992289_+ | SINE | Alu | Name=AluSc |
| ADediting_6107 | chr1_109994349_+ | SINE | Alu | Name=AluSq2 |
| ADediting_6108 | chr1_109994362_+ | SINE | Alu | Name=AluSq2 |
| ADediting_6109 | chr1_109994363_+ | SINE | Alu | Name=AluSq2 |
| ADediting_6110 | chr1_109994364_+ | SINE | Alu | Name=AluSq2 |
| ADediting_6111 | chr1_109994366_+ | SINE | Alu | Name=AluSq2 |
| ADediting_6112 | chr1_109994388_+ | SINE | Alu | Name=AluSq2 |
| ADediting_6113 | chr1_109994392_+ | SINE | Alu | Name=AluSq2 |
| ADediting_6114 | chr1_109994402_+ | SINE | Alu | Name=AluSq2 |
| ADediting_6115 | chr1_109994404_+ | SINE | Alu | Name=AluSq2 |
| ADediting_6116 | chr1_109994532_+ | SINE | Alu | Name=AluSq2 |
| ADediting_6117 | chr1_109994551_+ | SINE | Alu | Name=AluSq2 |
| ADediting_6118 | chr1_109995987_+ | SINE | Alu | Name=AluSx1 |
| ADediting_6119 | chr1_109995991_+ | SINE | Alu | Name=AluSx1 |
| ADediting_6120 | chr1_109995995_+ | SINE | Alu | Name=AluSx1 |
| ADediting_6121 | chr1_109996019_+ | SINE | Alu | Name=AluSx1 |
| ADediting_6122 | chr1_109996021_+ | SINE | Alu | Name=AluSx1 |
| ADediting_6123 | chr1_109996060_+ | SINE | Alu | Name=AluSx1 |
| ADediting_6124 | chr1_109996073_+ | SINE | Alu | Name=AluSx1 |
| ADediting_6125 | chr1_109996086_+ | SINE | Alu | Name=AluSx1 |
| ADediting_6126 | chr1_109996096_+ | SINE | Alu | Name=AluSx1 |
| ADediting_6127 | chr1_109996100_+ | SINE | Alu | Name=AluSx1 |
| ADediting_6128 | chr1_109996189_+ | SINE | Alu | Name=AluSx1 |
| ADediting_6129 | chr1_109998388_+ | SINE | Alu | Name=FLAM_C |
| ADediting_6130 | chr1_109998389_+ | SINE | Alu | Name=FLAM_C |
| ADediting_6131 | chr1_109998578_+ | SINE | Alu | Name=AluSx1 |
| ADediting_6132 | chr1_109998595_+ | SINE | Alu | Name=AluSx1 |
| ADediting_6133 | chr1_109998607_+ | SINE | Alu | Name=AluSx1 |
| ADediting_6134 | chr1_109998617_+ | SINE | Alu | Name=AluSx1 |
| ADediting_6135 | chr1_109998712_+ | SINE | Alu | Name=AluSx1 |
| ADediting_6136 | chr1_109998746_+ | SINE | Alu | Name=AluSx1 |
| ADediting_6137 | chr1_109998927_+ | SINE | Alu | Name=AluJr |
| ADediting_6138 | chr1_109998936_+ | SINE | Alu | Name=AluJr |
| ADediting_6139 | chr1_109998937_+ | SINE | Alu | Name=AluJr |
| ADediting_6140 | chr1_109998950_+ | SINE | Alu | Name=AluJr |
| ADediting_6141 | chr1_109998951_+ | SINE | Alu | Name=AluJr |
| ADediting_6142 | chr1_109998970_+ | SINE | Alu | Name=AluJr |
| ADediting_6143 | chr1_109999010_+ | SINE | Alu | Name=AluJr |
| ADediting_6144 | chr1_109999050_+ | SINE | Alu | Name=AluJr |
| ADediting_6145 | chr1_110004644_+ | SINE | Alu | Name=FLAM_A |
| ADediting_6146 | chr1_110004660_+ | SINE | Alu | Name=FLAM_A |
| ADediting_6147 | chr1_110004676_+ | SINE | Alu | Name=FLAM_A |
| ADediting_6148 | chr1_110004702_+ | SINE | Alu | Name=FLAM_A |
| ADediting_6149 | chr1_110008123_+ | SINE | Alu | Name=AluSg7 |
| ADediting_6150 | chr1_110008163_+ | SINE | Alu | Name=AluSg7 |
| ADediting_6152 | chr1_110013452_+ | SINE | Alu | Name=AluSz |
| ADediting_6153 | chr1_110013508_+ | SINE | Alu | Name=AluSz |
| ADediting_6154 | chr1_110013509_+ | SINE | Alu | Name=AluSz |
| ADediting_6155 | chr1_110013512_+ | SINE | Alu | Name=AluSz |
| ADediting_6156 | chr1_110013548_+ | SINE | Alu | Name=AluSz |
| ADediting_6157 | chr1_110013549_+ | SINE | Alu | Name=AluSz |
| ADediting_6158 | chr1_110013554_+ | SINE | Alu | Name=AluSz |
| ADediting_6159 | chr1_110013563_+ | SINE | Alu | Name=AluSz |
| ADediting_6160 | chr1_110013603_+ | SINE | Alu | Name=AluSz |
| ADediting_6161 | chr1_110013630_+ | SINE | Alu | Name=AluSz |
| ADediting_6162 | chr1_110013631_+ | SINE | Alu | Name=AluSz |
| ADediting_6163 | chr1_110013881_+ | SINE | Alu | Name=AluSz |
| ADediting_6164 | chr1_110013901_+ | SINE | Alu | Name=AluSz |
| ADediting_6165 | chr1_110013918_+ | SINE | Alu | Name=AluSz |
| ADediting_1596000 | chr1_110013962_+ | SINE | Alu | Name=AluSz |
| ADediting_1596001 | chr1_110013984_+ | SINE | Alu | Name=AluSz |
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RNA A-to-I editing events in the alternative splicing sites for AHCYL1 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for AHCYL1 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for AHCYL1 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for AHCYL1 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337757 | chr7_5495852_- | ENSG00000168710.18 | ENST00000369799.10 | AHCYL1-202 | hsa-miR-589-3p | chr1 | 110022948 | 110022955 | 8mer-1a | 110022932 | 110022955 | 152 | -21.91 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000168710.18 | ENST00000393614.8 | AHCYL1-203 | hsa-miR-589-3p | chr1 | 110022948 | 110022955 | 8mer-1a | 110022932 | 110022955 | 152 | -21.91 |
| ADediting_1391023 | chr8_140732605_- | ENSG00000168710.18 | ENST00000359172.3 | AHCYL1-201 | hsa-miR-151a-3p | chr1 | 110021700 | 110021706 | 7mer-m8 | 110021690 | 110021707 | 153 | -19.44 |
| ADediting_1391023 | chr8_140732605_- | ENSG00000168710.18 | ENST00000369799.10 | AHCYL1-202 | hsa-miR-151a-3p | chr1 | 110021700 | 110021706 | 7mer-m8 | 110021690 | 110021707 | 153 | -19.44 |
| ADediting_1391023 | chr8_140732605_- | ENSG00000168710.18 | ENST00000393614.8 | AHCYL1-203 | hsa-miR-151a-3p | chr1 | 110021700 | 110021706 | 7mer-m8 | 110021690 | 110021707 | 153 | -19.44 |
| ADediting_1471003 | chr9_63819626_+ | ENSG00000168710.18 | ENST00000369799.10 | AHCYL1-202 | hsa-miR-4477b | chr1 | 110023094 | 110023100 | 7mer-m8 | 110023082 | 110023101 | 152 | -9.87 |
| ADediting_1471003 | chr9_63819626_+ | ENSG00000168710.18 | ENST00000393614.8 | AHCYL1-203 | hsa-miR-4477b | chr1 | 110023094 | 110023100 | 7mer-m8 | 110023082 | 110023101 | 152 | -9.87 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for AHCYL1 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for AHCYL1 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | ADediting_6124 | chr1_109996073_+ | 0.723338860672454 | 0.0201853458189045 | 0.0831551985193996 | -0.0985671886800874 | 5.22567211264698e-08 | 0.303089461096097 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 1.23552711078971e-12 | 0.388911347950132 | 6.10572421330199e-06 | 0.253682387684517 | 5.89449892051058e-05 | 0.226101992306389 |
| AC | 1.22755953696592e-45 | 0.745746686462797 | 1.57939550813124e-19 | 0.530237397515175 | 6.72960118177935e-34 | 0.669700963721095 |
| PCC | 2.47157061202449e-08 | 0.389891610974275 | 0.00059512515290323 | 0.24624240917909 | 1.33993550542561e-11 | 0.464228692116675 |
| CER | 9.8624386635243e-14 | 0.55952009989205 | 0.000168447761200607 | 0.302482288774332 | 2.32618168933074e-12 | 0.53249080310504 |
| TCX | 4.01275789611459e-07 | 0.399783882137591 | 0.541468444999959 | 0.0502435934458236 | 8.94800938282658e-07 | 0.38855550989843 |
| FP | 0.0056804814317376 | 0.20651182499142 | 0.00972951865737614 | -0.193306857937208 | 1.53022578554934e-05 | 0.317910305118058 |
| IFG | 0.246311035803905 | 0.240766847379647 | 0.902169902032079 | 0.0259063971806887 | 0.0186713629542459 | 0.466733461931477 |
| PG | 1.28126605231921e-31 | 0.725016999111617 | 1.75940009291578e-11 | 0.467343890637536 | 0.00872840580541151 | 0.19179633685715 |
| STG | 0.0138732446291435 | 0.26756070636038 | 0.829554915354762 | 0.0238420584183704 | 0.00242415261178654 | 0.326656348685114 |
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Relation with AD stages for AHCYL1 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| CER | 3.74785008526214e-05 | 0.385712684553907 |
| TCX | 2.62423928964592e-07 | 0.475317185830018 |
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RelatedDrugs for AHCYL1 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for AHCYL1 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
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