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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for RPP30 |
 Gene summary |
| Gene information | Gene symbol | RPP30 | Gene ID | 10556 |
| Gene name | ribonuclease P/MRP subunit p30 | |
| Synonyms | TSG15 | |
| Cytomap | 10q23.31 | |
| Type of gene | protein-coding | |
| Description | ribonuclease P protein subunit p30RNase P subunit 2RNaseP protein p30ribonuclease P/MRP 30kDa subunit | |
| Modification date | 20200313 | |
| UniProtAcc | P78346, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
| RPP30 | GO:0001682 | tRNA 5'-leader removal | 16723659|30454648 |
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RNA A-to-I events for RPP30 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_222668(90901030, +), ADediting_222669(90901038, +), ADediting_222670(90901041, +), ADediting_222671(90901075, +), ADediting_222672(90901104, +), ADediting_222673(90901114, +), ADediting_222674(90901184, +), ADediting_222675(90901207, +), ADediting_222676(90901222, +), ADediting_222677(90901226, +), ADediting_222678(90901247, +), ADediting_222679(90901982, +), ADediting_222680(90901996, +), ADediting_222681(90902004, +), ADediting_222682(90902019, +), ADediting_222683(90902040, +), ADediting_222684(90902057, +), ADediting_222685(90902257, +), ADediting_222686(90902279, +), ADediting_222687(90902281, +), ADediting_222688(90902282, +), ADediting_222689(90902292, +), ADediting_222690(90902298, +), ADediting_222691(90902317, +), ADediting_222692(90902318, +), ADediting_222693(90902330, +), ADediting_222694(90902380, +), ADediting_222695(90902384, +), ADediting_222696(90902385, +), ADediting_222697(90902393, +), ADediting_222698(90902431, +), ADediting_222699(90902437, +), ADediting_222700(90902472, +), ADediting_222701(90902480, +), ADediting_222702(90902481, +), ADediting_222703(90904551, +), ADediting_222704(90904557, +), ADediting_222705(90904558, +), ADediting_222706(90904571, +), ADediting_222707(90904579, +), ADediting_222708(90904580, +), ADediting_222709(90904592, +), ADediting_222710(90904593, +), ADediting_222711(90904598, +), ADediting_222712(90904603, +), ADediting_222713(90904611, +), ADediting_222714(90904612, +), ADediting_222715(90904617, +), ADediting_222716(90904626, +), ADediting_222717(90904627, +), ADediting_222718(90904629, +), ADediting_222719(90904634, +), ADediting_222720(90904635, +), ADediting_222721(90904637, +), ADediting_222722(90904655, +), ADediting_222723(90904657, +), ADediting_222724(90904660, +), ADediting_222725(90904661, +), ADediting_222726(90904665, +), ADediting_222727(90904669, +), ADediting_222728(90904686, +), ADediting_222729(90904691, +), ADediting_222730(90904692, +), ADediting_222731(90904701, +), ADediting_222732(90904718, +), ADediting_222733(90904722, +), ADediting_222734(90904723, +), ADediting_222735(90904732, +), ADediting_222736(90904733, +), ADediting_222737(90904744, +), ADediting_222738(90904762, +), ADediting_222739(90904769, +), ADediting_222740(90904797, +), ADediting_1524879(90904662, +), ADediting_1524880(90904724, +), |
Top |
RNA editing positional annotations for RPP30 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| ADediting_222685 | chr10_90902257_+ | nonsynonymous SNV | ENST00000413330.5 | c.A811G | p.T271A | 0.061 | 0.0 | -0.15 |
| ADediting_222686 | chr10_90902279_+ | nonsynonymous SNV | ENST00000413330.5 | c.A833G | p.H278R | 0.023 | 0.537 | 0.1 |
| ADediting_222687 | chr10_90902281_+ | nonsynonymous SNV | ENST00000413330.5 | c.A835G | p.N279D | 0.0 | 0.621 | 0.01 |
| ADediting_222688 | chr10_90902282_+ | nonsynonymous SNV | ENST00000413330.5 | c.A836G | p.N279S | 0.0 | 0.621 | 0.09 |
| ADediting_222689 | chr10_90902292_+ | synonymous SNV | ENST00000413330.5 | c.A846G | p.S282S | . | . | . |
| ADediting_222690 | chr10_90902298_+ | synonymous SNV | ENST00000413330.5 | c.A852G | p.Q284Q | . | . | . |
| ADediting_222691 | chr10_90902317_+ | nonsynonymous SNV | ENST00000413330.5 | c.A871G | p.K291E | 0.0 | 0.621 | -0.18 |
| ADediting_222692 | chr10_90902318_+ | nonsynonymous SNV | ENST00000413330.5 | c.A872G | p.K291R | 0.0 | 0.621 | -0.14 |
| ADediting_222693 | chr10_90902330_+ | nonsynonymous SNV | ENST00000413330.5 | c.A884G | p.H295R | 0.0 | 0.0 | 0.63 |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_222668 | chr10_90901030_+ | UTR3 |
| ADediting_222669 | chr10_90901038_+ | UTR3 |
| ADediting_222670 | chr10_90901041_+ | UTR3 |
| ADediting_222671 | chr10_90901075_+ | UTR3 |
| ADediting_222672 | chr10_90901104_+ | UTR3 |
| ADediting_222673 | chr10_90901114_+ | UTR3 |
| ADediting_222674 | chr10_90901184_+ | UTR3 |
| ADediting_222675 | chr10_90901207_+ | UTR3 |
| ADediting_222676 | chr10_90901222_+ | UTR3 |
| ADediting_222677 | chr10_90901226_+ | UTR3 |
| ADediting_222678 | chr10_90901247_+ | UTR3 |
| ADediting_222679 | chr10_90901982_+ | UTR3 |
| ADediting_222680 | chr10_90901996_+ | UTR3 |
| ADediting_222681 | chr10_90902004_+ | UTR3 |
| ADediting_222682 | chr10_90902019_+ | UTR3 |
| ADediting_222683 | chr10_90902040_+ | UTR3 |
| ADediting_222684 | chr10_90902057_+ | UTR3 |
| ADediting_222685 | chr10_90902257_+ | exonic |
| ADediting_222686 | chr10_90902279_+ | exonic |
| ADediting_222687 | chr10_90902281_+ | exonic |
| ADediting_222688 | chr10_90902282_+ | exonic |
| ADediting_222689 | chr10_90902292_+ | exonic |
| ADediting_222690 | chr10_90902298_+ | exonic |
| ADediting_222691 | chr10_90902317_+ | exonic |
| ADediting_222692 | chr10_90902318_+ | exonic |
| ADediting_222693 | chr10_90902330_+ | exonic |
| ADediting_222694 | chr10_90902380_+ | intronic |
| ADediting_222695 | chr10_90902384_+ | intronic |
| ADediting_222696 | chr10_90902385_+ | intronic |
| ADediting_222697 | chr10_90902393_+ | intronic |
| ADediting_222698 | chr10_90902431_+ | intronic |
| ADediting_222699 | chr10_90902437_+ | intronic |
| ADediting_222700 | chr10_90902472_+ | intronic |
| ADediting_222701 | chr10_90902480_+ | intronic |
| ADediting_222702 | chr10_90902481_+ | intronic |
| ADediting_222703 | chr10_90904551_+ | intergenic |
| ADediting_222704 | chr10_90904557_+ | intergenic |
| ADediting_222705 | chr10_90904558_+ | intergenic |
| ADediting_222706 | chr10_90904571_+ | intergenic |
| ADediting_222707 | chr10_90904579_+ | intergenic |
| ADediting_222708 | chr10_90904580_+ | intergenic |
| ADediting_222709 | chr10_90904592_+ | intergenic |
| ADediting_222710 | chr10_90904593_+ | intergenic |
| ADediting_222711 | chr10_90904598_+ | intergenic |
| ADediting_222712 | chr10_90904603_+ | intergenic |
| ADediting_222713 | chr10_90904611_+ | intergenic |
| ADediting_222714 | chr10_90904612_+ | intergenic |
| ADediting_222715 | chr10_90904617_+ | intergenic |
| ADediting_222716 | chr10_90904626_+ | intergenic |
| ADediting_222717 | chr10_90904627_+ | intergenic |
| ADediting_222718 | chr10_90904629_+ | intergenic |
| ADediting_222719 | chr10_90904634_+ | intergenic |
| ADediting_222720 | chr10_90904635_+ | intergenic |
| ADediting_222721 | chr10_90904637_+ | intergenic |
| ADediting_222722 | chr10_90904655_+ | intergenic |
| ADediting_222723 | chr10_90904657_+ | intergenic |
| ADediting_222724 | chr10_90904660_+ | intergenic |
| ADediting_222725 | chr10_90904661_+ | intergenic |
| ADediting_222726 | chr10_90904665_+ | intergenic |
| ADediting_222727 | chr10_90904669_+ | intergenic |
| ADediting_222728 | chr10_90904686_+ | intergenic |
| ADediting_222729 | chr10_90904691_+ | intergenic |
| ADediting_222730 | chr10_90904692_+ | intergenic |
| ADediting_222731 | chr10_90904701_+ | intergenic |
| ADediting_222732 | chr10_90904718_+ | intergenic |
| ADediting_222733 | chr10_90904722_+ | intergenic |
| ADediting_222734 | chr10_90904723_+ | intergenic |
| ADediting_222735 | chr10_90904732_+ | intergenic |
| ADediting_222736 | chr10_90904733_+ | intergenic |
| ADediting_222737 | chr10_90904744_+ | intergenic |
| ADediting_222738 | chr10_90904762_+ | intergenic |
| ADediting_222739 | chr10_90904769_+ | intergenic |
| ADediting_222740 | chr10_90904797_+ | intergenic |
| ADediting_1524879 | chr10_90904662_+ | intergenic |
| ADediting_1524880 | chr10_90904724_+ | intergenic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_222668 | chr10_90901030_+ | SINE | Alu | Name=AluJo |
| ADediting_222669 | chr10_90901038_+ | SINE | Alu | Name=AluJo |
| ADediting_222670 | chr10_90901041_+ | SINE | Alu | Name=AluJo |
| ADediting_222671 | chr10_90901075_+ | SINE | Alu | Name=AluJo |
| ADediting_222672 | chr10_90901104_+ | SINE | Alu | Name=AluJo |
| ADediting_222673 | chr10_90901114_+ | SINE | Alu | Name=AluJo |
| ADediting_222674 | chr10_90901184_+ | SINE | Alu | Name=AluJo |
| ADediting_222675 | chr10_90901207_+ | SINE | Alu | Name=AluJo |
| ADediting_222676 | chr10_90901222_+ | SINE | Alu | Name=AluJo |
| ADediting_222677 | chr10_90901226_+ | SINE | Alu | Name=AluJo |
| ADediting_222678 | chr10_90901247_+ | SINE | Alu | Name=AluJo |
| ADediting_222679 | chr10_90901982_+ | SINE | Alu | Name=AluY |
| ADediting_222680 | chr10_90901996_+ | SINE | Alu | Name=AluY |
| ADediting_222681 | chr10_90902004_+ | SINE | Alu | Name=AluY |
| ADediting_222682 | chr10_90902019_+ | SINE | Alu | Name=AluY |
| ADediting_222683 | chr10_90902040_+ | SINE | Alu | Name=AluY |
| ADediting_222684 | chr10_90902057_+ | SINE | Alu | Name=AluY |
| ADediting_222685 | chr10_90902257_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222686 | chr10_90902279_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222687 | chr10_90902281_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222688 | chr10_90902282_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222689 | chr10_90902292_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222690 | chr10_90902298_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222691 | chr10_90902317_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222692 | chr10_90902318_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222693 | chr10_90902330_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222694 | chr10_90902380_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222695 | chr10_90902384_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222696 | chr10_90902385_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222697 | chr10_90902393_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222698 | chr10_90902431_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222699 | chr10_90902437_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222700 | chr10_90902472_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222701 | chr10_90902480_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222702 | chr10_90902481_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222703 | chr10_90904551_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222704 | chr10_90904557_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222705 | chr10_90904558_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222706 | chr10_90904571_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222707 | chr10_90904579_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222708 | chr10_90904580_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222709 | chr10_90904592_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222710 | chr10_90904593_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222711 | chr10_90904598_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222712 | chr10_90904603_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222713 | chr10_90904611_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222714 | chr10_90904612_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222715 | chr10_90904617_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222716 | chr10_90904626_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222717 | chr10_90904627_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222718 | chr10_90904629_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222719 | chr10_90904634_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222720 | chr10_90904635_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222721 | chr10_90904637_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222722 | chr10_90904655_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222723 | chr10_90904657_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222724 | chr10_90904660_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222725 | chr10_90904661_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222726 | chr10_90904665_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222727 | chr10_90904669_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222728 | chr10_90904686_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222729 | chr10_90904691_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222730 | chr10_90904692_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222731 | chr10_90904701_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222732 | chr10_90904718_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222733 | chr10_90904722_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222734 | chr10_90904723_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222735 | chr10_90904732_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222736 | chr10_90904733_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222737 | chr10_90904744_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222738 | chr10_90904762_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222739 | chr10_90904769_+ | SINE | Alu | Name=AluSz6 |
| ADediting_222740 | chr10_90904797_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1524879 | chr10_90904662_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1524880 | chr10_90904724_+ | SINE | Alu | Name=AluSz6 |
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RNA A-to-I editing events in the alternative splicing sites for RPP30 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RPP30 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for RPP30 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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Top |
The effects of the RNA editing to the miRNA binding sites for RPP30 |
| RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_222668 | chr10_90901030_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-4793-3p | chr10 | 90901026 | 90901032 | 7mer-m8 | 90901011 | 90901033 | 145 | -17.84 |
| ADediting_222668 | chr10_90901030_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-7703 | chr10 | 90901025 | 90901031 | 7mer-m8 | 90901010 | 90901032 | 162 | -25.2 |
| ADediting_222669 | chr10_90901038_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-122-3p | chr10 | 90901033 | 90901039 | 7mer-1a | 90901019 | 90901039 | 140 | -13.45 |
| ADediting_222670 | chr10_90901041_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-10525-3p | chr10 | 90901036 | 90901043 | 8mer-1a | 90901020 | 90901043 | 153 | -22.12 |
| ADediting_222671 | chr10_90901075_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-1199-5p | chr10 | 90901068 | 90901074 | 7mer-m8 | 90901056 | 90901075 | 156 | -28.57 |
| ADediting_222671 | chr10_90901075_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-3622a-3p | chr10 | 90901071 | 90901078 | 8mer-1a | 90901057 | 90901078 | 148 | -20.69 |
| ADediting_222671 | chr10_90901075_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-3622b-3p | chr10 | 90901071 | 90901078 | 8mer-1a | 90901058 | 90901078 | 156 | -24.35 |
| ADediting_222671 | chr10_90901075_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-6751-3p | chr10 | 90901068 | 90901074 | 7mer-m8 | 90901055 | 90901075 | 141 | -13.15 |
| ADediting_222673 | chr10_90901114_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-17-3p | chr10 | 90901110 | 90901116 | 7mer-m8 | 90901095 | 90901117 | 146 | -19.64 |
| ADediting_222673 | chr10_90901114_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-584-3p | chr10 | 90901107 | 90901113 | 7mer-m8 | 90901093 | 90901114 | 142 | -15.38 |
| ADediting_222676 | chr10_90901222_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-3151-3p | chr10 | 90901215 | 90901221 | 7mer-m8 | 90901203 | 90901222 | 142 | -15.75 |
| ADediting_222681 | chr10_90902004_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-3190-5p | chr10 | 90902002 | 90902008 | 7mer-m8 | 90901991 | 90902009 | 152 | -22.63 |
| ADediting_222681 | chr10_90902004_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-548s | chr10 | 90902001 | 90902007 | 7mer-m8 | 90901986 | 90902008 | 149 | -13.99 |
| ADediting_222683 | chr10_90902040_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-4767 | chr10 | 90902038 | 90902044 | 7mer-m8 | 90902023 | 90902045 | 140 | -17.18 |
| ADediting_222684 | chr10_90902057_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-6771-5p | chr10 | 90902051 | 90902058 | 8mer-1a | 90902037 | 90902058 | 151 | -26.02 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_222673 | chr10_90901114_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-20b-3p | chr10 | 90901110 | 90901116 | 7mer-m8 | 90901095 | 90901117 | 145 | -13.8 |
| ADediting_222674 | chr10_90901184_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-921 | chr10 | 90901180 | 90901186 | 7mer-m8 | 90901163 | 90901187 | 141 | -13.76 |
| ADediting_222676 | chr10_90901222_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-135a-5p | chr10 | 90901220 | 90901226 | 7mer-m8 | 90901208 | 90901227 | 147 | -14.52 |
| ADediting_222676 | chr10_90901222_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-135b-5p | chr10 | 90901220 | 90901226 | 7mer-m8 | 90901208 | 90901227 | 147 | -14.52 |
| ADediting_222677 | chr10_90901226_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-135a-5p | chr10 | 90901220 | 90901226 | 7mer-m8 | 90901208 | 90901227 | 147 | -14.52 |
| ADediting_222677 | chr10_90901226_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-135b-5p | chr10 | 90901220 | 90901226 | 7mer-m8 | 90901208 | 90901227 | 147 | -14.52 |
| ADediting_222677 | chr10_90901226_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-2392 | chr10 | 90901223 | 90901229 | 7mer-m8 | 90901209 | 90901230 | 141 | -18.36 |
| ADediting_222677 | chr10_90901226_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-3605-5p | chr10 | 90901224 | 90901230 | 7mer-m8 | 90901206 | 90901231 | 154 | -20.02 |
| ADediting_222678 | chr10_90901247_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-4266 | chr10 | 90901240 | 90901247 | 8mer-1a | 90901232 | 90901247 | 150 | -21.07 |
| ADediting_222679 | chr10_90901982_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-593-3p | chr10 | 90901980 | 90901986 | 7mer-m8 | 90901969 | 90901987 | 153 | -21 |
| ADediting_222679 | chr10_90901982_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-6728-3p | chr10 | 90901978 | 90901985 | 8mer-1a | 90901965 | 90901985 | 140 | -12.89 |
| ADediting_222681 | chr10_90902004_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-4794 | chr10 | 90902002 | 90902008 | 7mer-m8 | 90901987 | 90902009 | 151 | -21.79 |
| ADediting_222681 | chr10_90902004_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-664a-5p | chr10 | 90902002 | 90902008 | 7mer-m8 | 90901986 | 90902009 | 141 | -16.08 |
| ADediting_222682 | chr10_90902019_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-5186 | chr10 | 90902017 | 90902023 | 7mer-m8 | 90902004 | 90902024 | 147 | -15.89 |
| ADediting_222683 | chr10_90902040_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-363-5p | chr10 | 90902036 | 90902042 | 7mer-m8 | 90902021 | 90902043 | 149 | -19.53 |
| ADediting_222683 | chr10_90902040_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-6505-5p | chr10 | 90902033 | 90902039 | 7mer-m8 | 90902019 | 90902040 | 150 | -16.26 |
| ADediting_222684 | chr10_90902057_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-30b-3p | chr10 | 90902050 | 90902057 | 8mer-1a | 90902036 | 90902057 | 151 | -17.42 |
| ADediting_222684 | chr10_90902057_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-3689a-3p | chr10 | 90902050 | 90902057 | 8mer-1a | 90902037 | 90902057 | 143 | -22.02 |
| ADediting_222684 | chr10_90902057_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-3689b-3p | chr10 | 90902050 | 90902057 | 8mer-1a | 90902037 | 90902057 | 143 | -20.35 |
| ADediting_222684 | chr10_90902057_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-3689c | chr10 | 90902050 | 90902057 | 8mer-1a | 90902037 | 90902057 | 143 | -20.35 |
| ADediting_222684 | chr10_90902057_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-6779-5p | chr10 | 90902050 | 90902057 | 8mer-1a | 90902034 | 90902057 | 147 | -25.77 |
| ADediting_222684 | chr10_90902057_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-887-5p | chr10 | 90902051 | 90902058 | 8mer-1a | 90902038 | 90902058 | 147 | -13.82 |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_222685 | chr10_90902257_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-4486 | chr10 | 90902256 | 90902262 | 7mer-m8 | 90902245 | 90902263 | 146 | -18.47 |
| ADediting_222685 | chr10_90902257_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-4486 | chr10 | 90902256 | 90902262 | 7mer-m8 | 90902245 | 90902263 | 146 | -18.47 |
| ADediting_222688 | chr10_90902282_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-6529-3p | chr10 | 90902276 | 90902282 | 7mer-m8 | 90902261 | 90902283 | 156 | -18.52 |
| ADediting_222688 | chr10_90902282_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-6889-3p | chr10 | 90902276 | 90902282 | 7mer-m8 | 90902263 | 90902283 | 156 | -22.5 |
| ADediting_222688 | chr10_90902282_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-873-3p | chr10 | 90902280 | 90902286 | 7mer-m8 | 90902261 | 90902287 | 141 | -21.8 |
| ADediting_222688 | chr10_90902282_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-6529-3p | chr10 | 90902276 | 90902282 | 7mer-m8 | 90902261 | 90902283 | 156 | -18.52 |
| ADediting_222688 | chr10_90902282_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-6889-3p | chr10 | 90902276 | 90902282 | 7mer-m8 | 90902263 | 90902283 | 156 | -22.5 |
| ADediting_222688 | chr10_90902282_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-873-3p | chr10 | 90902280 | 90902286 | 7mer-m8 | 90902261 | 90902287 | 141 | -21.8 |
| ADediting_222690 | chr10_90902298_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-17-3p | chr10 | 90902292 | 90902298 | 7mer-m8 | 90902277 | 90902299 | 153 | -18.14 |
| ADediting_222690 | chr10_90902298_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-17-3p | chr10 | 90902292 | 90902298 | 7mer-m8 | 90902277 | 90902299 | 153 | -18.14 |
| ADediting_222692 | chr10_90902318_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-1199-5p | chr10 | 90902312 | 90902318 | 7mer-m8 | 90902300 | 90902319 | 157 | -29.56 |
| ADediting_222692 | chr10_90902318_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-6751-3p | chr10 | 90902312 | 90902318 | 7mer-m8 | 90902299 | 90902319 | 141 | -13.15 |
| ADediting_222692 | chr10_90902318_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-1199-5p | chr10 | 90902312 | 90902318 | 7mer-m8 | 90902300 | 90902319 | 157 | -29.56 |
| ADediting_222692 | chr10_90902318_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-6751-3p | chr10 | 90902312 | 90902318 | 7mer-m8 | 90902299 | 90902319 | 141 | -13.15 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-6765-5p | chr10 | 90902329 | 90902335 | 7mer-m8 | 90902315 | 90902336 | 163 | -29.54 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-6765-5p | chr10 | 90902329 | 90902335 | 7mer-m8 | 90902315 | 90902336 | 163 | -29.54 |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_222685 | chr10_90902257_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-1262 | chr10 | 90902255 | 90902261 | 7mer-m8 | 90900666 | 90902262 | 144 | -15.28 |
| ADediting_222685 | chr10_90902257_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-6736-5p | chr10 | 90902255 | 90902261 | 7mer-m8 | 90900668 | 90902262 | 143 | -20.94 |
| ADediting_222685 | chr10_90902257_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-1262 | chr10 | 90902255 | 90902261 | 7mer-m8 | 90900666 | 90902262 | 144 | -15.28 |
| ADediting_222685 | chr10_90902257_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-6736-5p | chr10 | 90902255 | 90902261 | 7mer-m8 | 90900668 | 90902262 | 143 | -20.94 |
| ADediting_222686 | chr10_90902279_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-1227-3p | chr10 | 90902274 | 90902281 | 8mer-1a | 90902262 | 90902281 | 148 | -18.2 |
| ADediting_222686 | chr10_90902279_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-1227-3p | chr10 | 90902274 | 90902281 | 8mer-1a | 90902262 | 90902281 | 148 | -18.2 |
| ADediting_222687 | chr10_90902281_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-5186 | chr10 | 90902280 | 90902286 | 7mer-m8 | 90902267 | 90902287 | 140 | -10.89 |
| ADediting_222687 | chr10_90902281_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-5186 | chr10 | 90902280 | 90902286 | 7mer-m8 | 90902267 | 90902287 | 140 | -10.89 |
| ADediting_222688 | chr10_90902282_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-5186 | chr10 | 90902280 | 90902286 | 7mer-m8 | 90902267 | 90902287 | 140 | -10.89 |
| ADediting_222688 | chr10_90902282_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-5186 | chr10 | 90902280 | 90902286 | 7mer-m8 | 90902267 | 90902287 | 140 | -10.89 |
| ADediting_222690 | chr10_90902298_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-12135 | chr10 | 90902297 | 90902303 | 7mer-m8 | 90902287 | 90902304 | 140 | -9.27 |
| ADediting_222690 | chr10_90902298_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-6516-5p | chr10 | 90902292 | 90902298 | 7mer-m8 | 90902274 | 90902299 | 147 | -15.44 |
| ADediting_222690 | chr10_90902298_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-12135 | chr10 | 90902297 | 90902303 | 7mer-m8 | 90902287 | 90902304 | 140 | -9.27 |
| ADediting_222690 | chr10_90902298_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-6516-5p | chr10 | 90902292 | 90902298 | 7mer-m8 | 90902274 | 90902299 | 147 | -15.44 |
| ADediting_222692 | chr10_90902318_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-135a-5p | chr10 | 90902317 | 90902323 | 7mer-m8 | 90902302 | 90902324 | 140 | -10.64 |
| ADediting_222692 | chr10_90902318_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-135b-5p | chr10 | 90902317 | 90902323 | 7mer-m8 | 90902302 | 90902324 | 140 | -11.82 |
| ADediting_222692 | chr10_90902318_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-135a-5p | chr10 | 90902317 | 90902323 | 7mer-m8 | 90902302 | 90902324 | 140 | -10.64 |
| ADediting_222692 | chr10_90902318_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-135b-5p | chr10 | 90902317 | 90902323 | 7mer-m8 | 90902302 | 90902324 | 140 | -11.82 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-1233-5p | chr10 | 90902325 | 90902331 | 7mer-m8 | 90902313 | 90902332 | 149 | -22.17 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-1273h-5p | chr10 | 90902324 | 90902330 | 7mer-m8 | 90902313 | 90902331 | 149 | -21.12 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-30b-3p | chr10 | 90902324 | 90902330 | 7mer-m8 | 90902309 | 90902331 | 148 | -19.32 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-3689a-3p | chr10 | 90902324 | 90902330 | 7mer-m8 | 90902306 | 90902331 | 142 | -18.92 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-3689b-3p | chr10 | 90902324 | 90902330 | 7mer-m8 | 90902312 | 90902331 | 148 | -18.1 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-3689c | chr10 | 90902324 | 90902330 | 7mer-m8 | 90902312 | 90902331 | 148 | -18.1 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-6778-5p | chr10 | 90902325 | 90902331 | 7mer-m8 | 90902311 | 90902332 | 150 | -23.18 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-6779-5p | chr10 | 90902324 | 90902330 | 7mer-m8 | 90902308 | 90902331 | 153 | -26.57 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-6780a-5p | chr10 | 90902324 | 90902330 | 7mer-m8 | 90902313 | 90902331 | 143 | -20.67 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000470933.1 | RPP30-206 | hsa-miR-6780a-5p | chr10 | 90902324 | 90902330 | 7mer-m8 | 90902322 | 90902344 | 140 | -21.13 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-1233-5p | chr10 | 90902325 | 90902331 | 7mer-m8 | 90902313 | 90902332 | 149 | -22.17 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-1273h-5p | chr10 | 90902324 | 90902330 | 7mer-m8 | 90902313 | 90902331 | 149 | -21.12 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-30b-3p | chr10 | 90902324 | 90902330 | 7mer-m8 | 90902309 | 90902331 | 148 | -19.32 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-3689a-3p | chr10 | 90902324 | 90902330 | 7mer-m8 | 90902306 | 90902331 | 142 | -18.92 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-3689b-3p | chr10 | 90902324 | 90902330 | 7mer-m8 | 90902312 | 90902331 | 148 | -18.1 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-3689c | chr10 | 90902324 | 90902330 | 7mer-m8 | 90902312 | 90902331 | 148 | -18.1 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-6778-5p | chr10 | 90902325 | 90902331 | 7mer-m8 | 90902311 | 90902332 | 150 | -23.18 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-6779-5p | chr10 | 90902324 | 90902330 | 7mer-m8 | 90902308 | 90902331 | 153 | -26.57 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-6780a-5p | chr10 | 90902324 | 90902330 | 7mer-m8 | 90902313 | 90902331 | 143 | -20.67 |
| ADediting_222693 | chr10_90902330_+ | ENSG00000148688.13 | ENST00000489806.5 | RPP30-210 | hsa-miR-6780a-5p | chr10 | 90902324 | 90902330 | 7mer-m8 | 90902322 | 90902344 | 140 | -21.13 |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_843620 | chr2_207754818_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-4775 | chr10 | 90900786 | 90900792 | 7mer-1a | 90900771 | 90900792 | 145 | -14.9 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337757 | chr7_5495852_- | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-589-3p | chr10 | 90901795 | 90901801 | 7mer-m8 | 90901780 | 90901802 | 151 | -13.02 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000148688.13 | ENST00000371703.7 | RPP30-202 | hsa-miR-4775 | chr10 | 90901481 | 90901487 | 7mer-m8 | 90901467 | 90901488 | 151 | -6.03 |
| Differentially expressed gene-miRNA network |
Top |
The effects of the RNA editing to the stability of the RNA structures for RPP30 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000371703.7 | protein_coding |  |  |
| ENST00000413330.5 | protein_coding |  |  |
| ENST00000489806.5 | lncRNA |  |  |
| ENST00000470933.1 | lncRNA |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_222668 | ENST00000371703.7 | chr10_90901030_+ | 1429 | -743.30 | -738.00 | -754.60 |
| ADediting_222669 | ENST00000371703.7 | chr10_90901038_+ | 1437 | -738.70 | -738.00 | -754.60 |
| ADediting_222670 | ENST00000371703.7 | chr10_90901041_+ | 1440 | -738.20 | -738.00 | -754.60 |
| ADediting_222671 | ENST00000371703.7 | chr10_90901075_+ | 1474 | -738.00 | -738.00 | -754.60 |
| ADediting_222672 | ENST00000371703.7 | chr10_90901104_+ | 1503 | -737.50 | -738.00 | -754.60 |
| ADediting_222673 | ENST00000371703.7 | chr10_90901114_+ | 1513 | -738.00 | -738.00 | -754.60 |
| ADediting_222674 | ENST00000371703.7 | chr10_90901184_+ | 1583 | -738.70 | -738.00 | -754.60 |
| ADediting_222675 | ENST00000371703.7 | chr10_90901207_+ | 1606 | -738.00 | -738.00 | -754.60 |
| ADediting_222676 | ENST00000371703.7 | chr10_90901222_+ | 1621 | -742.10 | -738.00 | -754.60 |
| ADediting_222677 | ENST00000371703.7 | chr10_90901226_+ | 1625 | -737.50 | -738.00 | -754.60 |
| ADediting_222678 | ENST00000371703.7 | chr10_90901247_+ | 1646 | -743.30 | -738.00 | -754.60 |
| ADediting_222679 | ENST00000371703.7 | chr10_90901982_+ | 2381 | -737.30 | -738.00 | -754.60 |
| ADediting_222680 | ENST00000371703.7 | chr10_90901996_+ | 2395 | -738.10 | -738.00 | -754.60 |
| ADediting_222681 | ENST00000371703.7 | chr10_90902004_+ | 2403 | -740.20 | -738.00 | -754.60 |
| ADediting_222682 | ENST00000371703.7 | chr10_90902019_+ | 2418 | -738.00 | -738.00 | -754.60 |
| ADediting_222683 | ENST00000371703.7 | chr10_90902040_+ | 2439 | -739.50 | -738.00 | -754.60 |
| ADediting_222684 | ENST00000371703.7 | chr10_90902057_+ | 2456 | -740.80 | -738.00 | -754.60 |
| ADediting_222685 | ENST00000413330.5 | chr10_90902257_+ | 846 | -281.70 | -279.40 | -290.70 |
| ADediting_222686 | ENST00000413330.5 | chr10_90902279_+ | 868 | -279.80 | -279.40 | -290.70 |
| ADediting_222687 | ENST00000413330.5 | chr10_90902281_+ | 870 | -281.60 | -279.40 | -290.70 |
| ADediting_222688 | ENST00000413330.5 | chr10_90902282_+ | 871 | -279.40 | -279.40 | -290.70 |
| ADediting_222689 | ENST00000413330.5 | chr10_90902292_+ | 881 | -279.00 | -279.40 | -290.70 |
| ADediting_222690 | ENST00000413330.5 | chr10_90902298_+ | 887 | -279.90 | -279.40 | -290.70 |
| ADediting_222691 | ENST00000413330.5 | chr10_90902317_+ | 906 | -281.60 | -279.40 | -290.70 |
| ADediting_222692 | ENST00000413330.5 | chr10_90902318_+ | 907 | -285.00 | -279.40 | -290.70 |
| ADediting_222693 | ENST00000413330.5 | chr10_90902330_+ | 919 | -280.20 | -279.40 | -290.70 |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_222685 | ENST00000489806.5 | chr10_90902257_+ | 379 | -341.90 | -338.80 | -349.90 |
| ADediting_222686 | ENST00000489806.5 | chr10_90902279_+ | 401 | -339.20 | -338.80 | -349.90 |
| ADediting_222687 | ENST00000489806.5 | chr10_90902281_+ | 403 | -341.00 | -338.80 | -349.90 |
| ADediting_222688 | ENST00000489806.5 | chr10_90902282_+ | 404 | -338.80 | -338.80 | -349.90 |
| ADediting_222689 | ENST00000489806.5 | chr10_90902292_+ | 414 | -338.40 | -338.80 | -349.90 |
| ADediting_222690 | ENST00000489806.5 | chr10_90902298_+ | 420 | -342.00 | -338.80 | -349.90 |
| ADediting_222691 | ENST00000489806.5 | chr10_90902317_+ | 439 | -340.40 | -338.80 | -349.90 |
| ADediting_222692 | ENST00000489806.5 | chr10_90902318_+ | 440 | -343.80 | -338.80 | -349.90 |
| ADediting_222693 | ENST00000489806.5 | chr10_90902330_+ | 452 | -339.60 | -338.80 | -349.90 |
| ADediting_222685 | ENST00000470933.1 | chr10_90902257_+ | 181 | -175.00 | -171.90 | -185.90 |
| ADediting_222686 | ENST00000470933.1 | chr10_90902279_+ | 203 | -172.30 | -171.90 | -185.90 |
| ADediting_222687 | ENST00000470933.1 | chr10_90902281_+ | 205 | -174.10 | -171.90 | -185.90 |
| ADediting_222688 | ENST00000470933.1 | chr10_90902282_+ | 206 | -171.90 | -171.90 | -185.90 |
| ADediting_222689 | ENST00000470933.1 | chr10_90902292_+ | 216 | -171.50 | -171.90 | -185.90 |
| ADediting_222690 | ENST00000470933.1 | chr10_90902298_+ | 222 | -176.60 | -171.90 | -185.90 |
| ADediting_222691 | ENST00000470933.1 | chr10_90902317_+ | 241 | -173.00 | -171.90 | -185.90 |
| ADediting_222692 | ENST00000470933.1 | chr10_90902318_+ | 242 | -175.50 | -171.90 | -185.90 |
| ADediting_222693 | ENST00000470933.1 | chr10_90902330_+ | 254 | -171.50 | -171.90 | -185.90 |
Top |
Relation with ADAR for RPP30 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| CER | ADediting_222672 | chr10_90901104_+ | 2.45909148186936e-05 | 0.337123013249552 | 1.01087654437477e-08 | 0.446632714496903 | 0.184753755203504 | 0.108877228825081 |
| CER | ADediting_222674 | chr10_90901184_+ | 0.00161331355598017 | 0.25533547390355 | 1.55201705822071e-05 | 0.344824003436579 | 0.145537443298464 | 0.119412430590152 |
| CER | ADediting_222680 | chr10_90901996_+ | 1.60783104788392e-05 | 0.344239974783911 | 2.96452987697113e-07 | 0.403917726815871 | 0.14318019256888 | 0.120110788102804 |
| CER | ADediting_222681 | chr10_90902004_+ | 4.29441266392537e-06 | 0.365312289574916 | 3.77220292816639e-08 | 0.430678338228245 | 0.061560240588753 | 0.153019830184495 |
| TCX | ADediting_222681 | chr10_90902004_+ | 9.75559410854963e-07 | 0.38732054386125 | 1.37944282400437e-05 | 0.34676414692214 | 0.580956726812665 | 0.0454263494231617 |
| CER | ADediting_222686 | chr10_90902279_+ | 0.00124432921469679 | 0.261200867277461 | 6.3624963349588e-06 | 0.359192899662936 | 0.0162712791916839 | 0.195919354863074 |
| TCX | ADediting_222686 | chr10_90902279_+ | 0.0178575946900159 | 0.193182600575081 | 3.20555336346162e-05 | 0.332592878551906 | 0.934246372745493 | 0.00679312886893507 |
| CER | ADediting_222690 | chr10_90902298_+ | 0.000600705752740167 | 0.27697926918642 | 3.007223255658e-08 | 0.43348344456789 | 0.0163493418932939 | 0.19577936640383 |
| TCX | ADediting_222690 | chr10_90902298_+ | 0.0527908417706862 | 0.158450102065018 | 5.48001806568436e-05 | 0.323205843613071 | 0.181882788806716 | -0.109588845770635 |
| CER | ADediting_222693 | chr10_90902330_+ | 4.7750025666916e-05 | 0.325646096472637 | 7.99714035604595e-10 | 0.475233565375092 | 0.0109363165815694 | 0.207248848318297 |
| CER | ADediting_222694 | chr10_90902380_+ | 7.15584924311254e-05 | 0.318417605795858 | 0.000110799635058038 | 0.310392548416752 | 0.940910387107147 | -0.00610333694670287 |
| CER | ADediting_222695 | chr10_90902384_+ | 4.08251894375841e-05 | 0.328397385631183 | 0.00028016552529891 | 0.292561908102586 | 0.388478247258361 | 0.0709176098299702 |
| TCX | ADediting_222695 | chr10_90902384_+ | 4.4179181227172e-07 | 0.398458730239859 | 2.34502546644084e-06 | 0.374492031430973 | 0.58020003377351 | -0.0455171739244496 |
| CER | ADediting_222697 | chr10_90902393_+ | 0.00125821367662124 | 0.260952947724268 | 5.4870979423853e-05 | 0.323182866646417 | 0.842135720496151 | -0.0163976213139953 |
| CER | ADediting_222698 | chr10_90902431_+ | 3.8968052187599e-09 | 0.457690580178647 | 5.7183873815682e-12 | 0.524337168568246 | 0.0615677076578876 | 0.15301548548357 |
| TCX | ADediting_222698 | chr10_90902431_+ | 3.52422881435436e-10 | 0.483936094958649 | 5.94775640589502e-09 | 0.452833861989217 | 0.642101261407061 | -0.0382538475545859 |
| CER | ADediting_222700 | chr10_90902472_+ | 7.00506886985378e-05 | 0.318802747010617 | 7.81355851565763e-05 | 0.316821819787627 | 0.880311599844291 | 0.0123975726769627 |
| CER | ADediting_222706 | chr10_90904571_+ | 1.86664777290509e-08 | 0.439303913693844 | 3.46031284429542e-07 | 0.401813269617162 | 0.300938822796571 | -0.0850184099899531 |
| TCX | ADediting_222706 | chr10_90904571_+ | 1.18629399444427e-05 | 0.349228372079595 | 7.19472520428246e-11 | 0.500144900835085 | 0.232682558566415 | -0.0980321726203231 |
| CER | ADediting_222708 | chr10_90904580_+ | 1.11903579632693e-07 | 0.416853922511676 | 3.23905865586634e-07 | 0.402714253299608 | 0.657429633831082 | 0.0365020276448063 |
| TCX | ADediting_222708 | chr10_90904580_+ | 0.0276930850777909 | 0.179797000863107 | 1.95698944635031e-07 | 0.409499046780266 | 0.00853594681390063 | -0.21404271076187 |
| CER | ADediting_222709 | chr10_90904592_+ | 4.62664694252598e-07 | 0.397820709254546 | 1.5757982387883e-09 | 0.467841019010119 | 0.945074588525512 | 0.00567251878559568 |
| CER | ADediting_222713 | chr10_90904611_+ | 2.02846284581839e-05 | 0.340369076443409 | 0.000129533743698242 | 0.307468747832564 | 0.858902494205911 | -0.014636640499717 |
| TCX | ADediting_222713 | chr10_90904611_+ | 7.10385889553185e-06 | 0.357454304934797 | 2.03087640313364e-08 | 0.43828263253243 | 0.0666140036396926 | -0.150173258116221 |
| CER | ADediting_222714 | chr10_90904612_+ | 2.57505950519903e-07 | 0.405821948373762 | 1.08530814290748e-05 | 0.350672167476902 | 0.576505498072544 | -0.0459614150282074 |
| TCX | ADediting_222714 | chr10_90904612_+ | 2.04691714227335e-06 | 0.376516833176452 | 9.4161454360323e-11 | 0.49745897223295 | 0.0174467268196976 | -0.193870526154202 |
| CER | ADediting_222715 | chr10_90904617_+ | 4.25552509688623e-05 | 0.327671144473286 | 8.87189625362518e-06 | 0.353917117918124 | 0.390955562914987 | -0.070548920110476 |
| TCX | ADediting_222715 | chr10_90904617_+ | 0.0349997571594494 | 0.172298742029399 | 1.11024690549338e-07 | 0.416956430508538 | 0.0114671627140151 | -0.205926386942174 |
| CER | ADediting_222719 | chr10_90904634_+ | 2.46410360816797e-06 | 0.373750977604445 | 1.26241806335882e-05 | 0.348214856488261 | 0.463223409522356 | -0.060344253688517 |
| TCX | ADediting_222719 | chr10_90904634_+ | 6.76853225728954e-06 | 0.358218306158116 | 6.91449161779661e-08 | 0.423051054912069 | 0.00700821897469302 | -0.219312159764944 |
| CER | ADediting_222720 | chr10_90904635_+ | 3.52385121863821e-06 | 0.368343920931191 | 3.6504152257132e-07 | 0.401082067489707 | 0.34457546847307 | -0.0777055468563316 |
| TCX | ADediting_222720 | chr10_90904635_+ | 0.000149983894005333 | 0.304697145082054 | 6.23767141681981e-05 | 0.320891986518308 | 0.0111880670329788 | -0.206614805148756 |
| CER | ADediting_222730 | chr10_90904692_+ | 8.2608186002703e-08 | 0.420775509233758 | 2.44964649956038e-07 | 0.406494150989341 | 0.743105132387724 | 0.0269810321238334 |
| TCX | ADediting_222730 | chr10_90904692_+ | 6.29746278971823e-07 | 0.393524983151564 | 2.11260291317722e-07 | 0.408478394750205 | 0.00380920033956827 | -0.234906880729776 |
| CER | ADediting_222731 | chr10_90904701_+ | 3.03399588059588e-05 | 0.333538686257729 | 8.14481474716659e-08 | 0.420957015221794 | 0.44059534213696 | -0.0634344657629033 |
| TCX | ADediting_222731 | chr10_90904701_+ | 1.42756403301793e-05 | 0.346201086348205 | 4.90194199100373e-07 | 0.397019995005239 | 0.0884127703918136 | -0.139602929310656 |
| CER | ADediting_222732 | chr10_90904718_+ | 1.53931280585295e-05 | 0.344959704825478 | 2.68155406881412e-06 | 0.372481494021424 | 0.943522134861415 | -0.00583311327409438 |
| TCX | ADediting_222732 | chr10_90904718_+ | 6.64579212125645e-06 | 0.358506942920342 | 4.53959687020992e-08 | 0.428367379200711 | 0.00686460759656121 | -0.219858674147509 |
| CER | ADediting_222733 | chr10_90904722_+ | 3.47410074106708e-05 | 0.331203906253591 | 4.11539305769141e-05 | 0.328257190976784 | 0.380318276186343 | 0.0721421709802155 |
| TCX | ADediting_222733 | chr10_90904722_+ | 9.84049156527399e-06 | 0.3522534326847 | 4.79616117901325e-07 | 0.397322462646115 | 0.148549734656301 | -0.118532378004983 |
| CER | ADediting_222734 | chr10_90904723_+ | 0.001215614626342 | 0.261721717650071 | 1.32707154079901e-05 | 0.347398410796247 | 0.635347244299623 | -0.0390311723408745 |
| CER | ADediting_222736 | chr10_90904733_+ | 9.89215214231619e-07 | 0.387121402898252 | 6.40174306510548e-08 | 0.42403139484313 | 0.913065782797412 | -0.00898890235414083 |
| TCX | ADediting_222736 | chr10_90904733_+ | 2.14868258675442e-05 | 0.339402041651403 | 6.112380429702e-08 | 0.424618419040284 | 0.0606802622504787 | -0.153534895605788 |
| TCX | ADediting_222739 | chr10_90904769_+ | 0.000198518664673026 | 0.299318178862816 | 5.64481337352327e-05 | 0.322678095905722 | 0.0494325023730067 | -0.160728647872465 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 4.12818984008288e-40 | 0.659774590849289 | 4.3913745472511e-51 | 0.721440343442223 | 0.164725971227027 | 0.0791057074592816 |
| AC | 1.00207779363024e-69 | 0.846126465434413 | 1.56974202943722e-44 | 0.739561631173533 | 1.43798576142479e-16 | 0.490920111359744 |
| PCC | 5.23744180782921e-29 | 0.696101534916509 | 1.24898608385735e-30 | 0.710235686326846 | 0.014363644462724 | 0.176895818445459 |
| CER | 1.06534040051863e-16 | 0.610670760471439 | 2.7032450548932e-22 | 0.687247365476305 | 0.000595347221268196 | 0.277167666180482 |
| TCX | 4.07337014217396e-30 | 0.765323508781179 | 4.83894922066635e-15 | 0.5832062016154 | 0.0268510693508538 | 0.180766395935704 |
| FP | 1.99702008902923e-13 | 0.514658611092487 | 6.19117639667452e-26 | 0.684399928333228 | 0.669551105279528 | -0.0322059261347069 |
| IFG | 0.000591477781997951 | 0.638598810613852 | 0.0224191237429083 | 0.454622774553309 | 0.335582757999919 | -0.200898043159179 |
| PG | 1.67347261558645e-53 | 0.851601874851875 | 2.50091778361706e-29 | 0.705555159704311 | 0.339174222517882 | -0.0704704096635439 |
| STG | 5.99419372277405e-17 | 0.759009453973965 | 4.17147646703812e-15 | 0.728240913722886 | 0.352158274417915 | -0.102787103970806 |
Top |
Relation with AD stages for RPP30 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| CER | ADediting_222685 | chr10_90902257_+ | 0.000828846459292119 | 0.317027344749235 |
| CER | ADediting_222686 | chr10_90902279_+ | 0.00113977616418974 | 0.308969982474755 |
| CER | ADediting_222690 | chr10_90902298_+ | 0.000428065153525862 | 0.333064012813655 |
| CER | ADediting_222693 | chr10_90902330_+ | 0.000137012757685352 | 0.358830711751767 |
| TCX | ADediting_222681 | chr10_90902004_+ | 0.000767858264563292 | 0.321830328691806 |
| IFG | ADediting_222692 | chr10_90902318_+ | 0.0354713369979928 | 0.422303326441651 |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| CER | 1.99989790664148e-06 | 0.439060215134342 |
Top |
RelatedDrugs for RPP30 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RPP30 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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