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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for LINC02482 |
 Gene summary |
| Gene information | Gene symbol | LINC02482 | Gene ID | 105374366 |
| Gene name | long intergenic non-protein coding RNA 2482 | |
| Synonyms | - | |
| Cytomap | 4p16.1 | |
| Type of gene | ncRNA | |
| Description | - | |
| Modification date | 20200313 | |
| UniProtAcc | ||
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for LINC02482 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_1142626(6651441, -), ADediting_1142627(6652191, -), ADediting_1142628(6652832, -), ADediting_1142629(6652900, -), ADediting_1142630(6652918, -), ADediting_1142631(6653473, -), ADediting_1142632(6653482, -), ADediting_1142633(6653483, -), ADediting_1142634(6653488, -), ADediting_1142635(6653647, -), ADediting_1142636(6657183, -), ADediting_1142637(6659341, -), ADediting_1142638(6659358, -), ADediting_1142639(6659455, -), ADediting_1142640(6659469, -), ADediting_1142641(6659477, -), ADediting_1142642(6659491, -), ADediting_1142643(6659494, -), ADediting_1142644(6659495, -), ADediting_1142645(6660970, -), ADediting_1142646(6661024, -), ADediting_1142647(6661981, -), ADediting_1142648(6661988, -), ADediting_1142649(6661995, -), ADediting_1142650(6661996, -), ADediting_1142651(6662012, -), ADediting_1652615(6649733, -), |
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RNA editing positional annotations for LINC02482 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1142626 | chr4_6651441_- | ncRNA_intronic |
| ADediting_1142627 | chr4_6652191_- | ncRNA_intronic |
| ADediting_1142628 | chr4_6652832_- | ncRNA_intronic |
| ADediting_1142629 | chr4_6652900_- | ncRNA_intronic |
| ADediting_1142630 | chr4_6652918_- | ncRNA_intronic |
| ADediting_1142631 | chr4_6653473_- | ncRNA_intronic |
| ADediting_1142632 | chr4_6653482_- | ncRNA_intronic |
| ADediting_1142633 | chr4_6653483_- | ncRNA_intronic |
| ADediting_1142634 | chr4_6653488_- | ncRNA_intronic |
| ADediting_1142635 | chr4_6653647_- | ncRNA_intronic |
| ADediting_1142636 | chr4_6657183_- | ncRNA_intronic |
| ADediting_1142637 | chr4_6659341_- | ncRNA_exonic |
| ADediting_1142638 | chr4_6659358_- | ncRNA_exonic |
| ADediting_1142639 | chr4_6659455_- | ncRNA_exonic |
| ADediting_1142640 | chr4_6659469_- | ncRNA_exonic |
| ADediting_1142641 | chr4_6659477_- | ncRNA_exonic |
| ADediting_1142642 | chr4_6659491_- | ncRNA_exonic |
| ADediting_1142643 | chr4_6659494_- | ncRNA_exonic |
| ADediting_1142644 | chr4_6659495_- | ncRNA_exonic |
| ADediting_1142645 | chr4_6660970_- | ncRNA_intronic |
| ADediting_1142646 | chr4_6661024_- | ncRNA_intronic |
| ADediting_1142647 | chr4_6661981_- | ncRNA_exonic |
| ADediting_1142648 | chr4_6661988_- | ncRNA_exonic |
| ADediting_1142649 | chr4_6661995_- | ncRNA_exonic |
| ADediting_1142650 | chr4_6661996_- | ncRNA_exonic |
| ADediting_1142651 | chr4_6662012_- | ncRNA_exonic |
| ADediting_1652615 | chr4_6649733_- | ncRNA_intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1142626 | chr4_6651441_- | SINE | Alu | Name=AluJr |
| ADediting_1142627 | chr4_6652191_- | SINE | Alu | Name=AluSc8 |
| ADediting_1142628 | chr4_6652832_- | SINE | Alu | Name=AluSx |
| ADediting_1142629 | chr4_6652900_- | SINE | Alu | Name=AluSx |
| ADediting_1142630 | chr4_6652918_- | SINE | Alu | Name=AluSx |
| ADediting_1142631 | chr4_6653473_- | SINE | Alu | Name=AluSg |
| ADediting_1142632 | chr4_6653482_- | SINE | Alu | Name=AluSg |
| ADediting_1142633 | chr4_6653483_- | SINE | Alu | Name=AluSg |
| ADediting_1142634 | chr4_6653488_- | SINE | Alu | Name=AluSg |
| ADediting_1142635 | chr4_6653647_- | SINE | Alu | Name=AluSg |
| ADediting_1142636 | chr4_6657183_- | SINE | Alu | Name=AluSx |
| ADediting_1142637 | chr4_6659341_- | SINE | Alu | Name=AluJb |
| ADediting_1142638 | chr4_6659358_- | SINE | Alu | Name=AluJb |
| ADediting_1142639 | chr4_6659455_- | SINE | Alu | Name=AluJb |
| ADediting_1142640 | chr4_6659469_- | SINE | Alu | Name=AluJb |
| ADediting_1142641 | chr4_6659477_- | SINE | Alu | Name=AluJb |
| ADediting_1142642 | chr4_6659491_- | SINE | Alu | Name=AluJb |
| ADediting_1142643 | chr4_6659494_- | SINE | Alu | Name=AluJb |
| ADediting_1142644 | chr4_6659495_- | SINE | Alu | Name=AluJb |
| ADediting_1142645 | chr4_6660970_- | SINE | Alu | Name=AluSc |
| ADediting_1142646 | chr4_6661024_- | SINE | Alu | Name=AluSc |
| ADediting_1142647 | chr4_6661981_- | SINE | Alu | Name=AluJb |
| ADediting_1142648 | chr4_6661988_- | SINE | Alu | Name=AluJb |
| ADediting_1142649 | chr4_6661995_- | SINE | Alu | Name=AluJb |
| ADediting_1142650 | chr4_6661996_- | SINE | Alu | Name=AluJb |
| ADediting_1142651 | chr4_6662012_- | SINE | Alu | Name=AluJb |
| ADediting_1652615 | chr4_6649733_- | SINE | Alu | Name=AluSx3 |
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RNA A-to-I editing events in the alternative splicing sites for LINC02482 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for LINC02482 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for LINC02482 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for LINC02482 |
| RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1142637 | chr4_6659341_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-6089 | chr4 | 6659336 | 6659342 | 7mer-m8 | 6659335 | 6659357 | 168 | -39.94 |
| ADediting_1142638 | chr4_6659358_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-3622a-3p | chr4 | 6659354 | 6659361 | 8mer-1a | 6659354 | 6659375 | 152 | -17.94 |
| ADediting_1142638 | chr4_6659358_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-3622b-3p | chr4 | 6659354 | 6659361 | 8mer-1a | 6659354 | 6659374 | 161 | -25.6 |
| ADediting_1142639 | chr4_6659455_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-4746-5p | chr4 | 6659455 | 6659461 | 7mer-m8 | 6659454 | 6659476 | 150 | -23.84 |
| ADediting_1142639 | chr4_6659455_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-4746-5p | chr4 | 6659455 | 6659461 | 7mer-m8 | 6659454 | 6659476 | 150 | -23.84 |
| ADediting_1142640 | chr4_6659469_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-6771-5p | chr4 | 6659468 | 6659474 | 7mer-m8 | 6659467 | 6659486 | 160 | -34.33 |
| ADediting_1142640 | chr4_6659469_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-6771-5p | chr4 | 6659468 | 6659474 | 7mer-m8 | 6659467 | 6659486 | 160 | -34.33 |
| ADediting_1142641 | chr4_6659477_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-6089 | chr4 | 6659472 | 6659478 | 7mer-m8 | 6659471 | 6659494 | 164 | -37.08 |
| ADediting_1142641 | chr4_6659477_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-6089 | chr4 | 6659472 | 6659478 | 7mer-m8 | 6659471 | 6659494 | 164 | -37.08 |
| ADediting_1142647 | chr4_6661981_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-1914-5p | chr4 | 6661980 | 6661986 | 7mer-m8 | 6661979 | 6662000 | 152 | -18.32 |
| ADediting_1142647 | chr4_6661981_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-6529-3p | chr4 | 6661981 | 6661987 | 7mer-m8 | 6661980 | 6662001 | 145 | -18.15 |
| ADediting_1142647 | chr4_6661981_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-6811-3p | chr4 | 6661979 | 6661985 | 7mer-m8 | 6661978 | 6661998 | 156 | -19.99 |
| ADediting_1142647 | chr4_6661981_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-6889-3p | chr4 | 6661981 | 6661987 | 7mer-m8 | 6661980 | 6661999 | 140 | -14.31 |
| ADediting_1142647 | chr4_6661981_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-1914-5p | chr4 | 6661980 | 6661986 | 7mer-m8 | 6661979 | 6662000 | 152 | -18.32 |
| ADediting_1142647 | chr4_6661981_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-6529-3p | chr4 | 6661981 | 6661987 | 7mer-m8 | 6661980 | 6662001 | 145 | -18.15 |
| ADediting_1142647 | chr4_6661981_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-6811-3p | chr4 | 6661979 | 6661985 | 7mer-m8 | 6661978 | 6661998 | 156 | -19.99 |
| ADediting_1142647 | chr4_6661981_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-6889-3p | chr4 | 6661981 | 6661987 | 7mer-m8 | 6661980 | 6661999 | 140 | -14.31 |
| ADediting_1142648 | chr4_6661988_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-1247-3p | chr4 | 6661986 | 6661992 | 7mer-m8 | 6661985 | 6662007 | 164 | -25.83 |
| ADediting_1142648 | chr4_6661988_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-1247-3p | chr4 | 6661986 | 6661992 | 7mer-m8 | 6661985 | 6662007 | 164 | -25.83 |
| ADediting_1142649 | chr4_6661995_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-3929 | chr4 | 6661992 | 6661998 | 7mer-m8 | 6661991 | 6662014 | 148 | -21.3 |
| ADediting_1142649 | chr4_6661995_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-4478 | chr4 | 6661992 | 6661998 | 7mer-m8 | 6661991 | 6662008 | 151 | -22.63 |
| ADediting_1142649 | chr4_6661995_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-4649-3p | chr4 | 6661995 | 6662001 | 7mer-m8 | 6661994 | 6662013 | 146 | -16.06 |
| ADediting_1142649 | chr4_6661995_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-485-5p | chr4 | 6661991 | 6661997 | 7mer-m8 | 6661990 | 6662013 | 161 | -19.47 |
| ADediting_1142649 | chr4_6661995_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-6884-5p | chr4 | 6661991 | 6661997 | 7mer-m8 | 6661990 | 6662011 | 163 | -22.1 |
| ADediting_1142649 | chr4_6661995_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-7160-5p | chr4 | 6661994 | 6662000 | 7mer-m8 | 6661993 | 6662017 | 149 | -21.28 |
| ADediting_1142649 | chr4_6661995_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-3929 | chr4 | 6661992 | 6661998 | 7mer-m8 | 6661991 | 6662014 | 148 | -21.3 |
| ADediting_1142649 | chr4_6661995_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-4478 | chr4 | 6661992 | 6661998 | 7mer-m8 | 6661991 | 6662008 | 151 | -22.63 |
| ADediting_1142649 | chr4_6661995_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-4649-3p | chr4 | 6661995 | 6662001 | 7mer-m8 | 6661994 | 6662013 | 146 | -16.06 |
| ADediting_1142649 | chr4_6661995_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-485-5p | chr4 | 6661991 | 6661997 | 7mer-m8 | 6661990 | 6662013 | 161 | -19.47 |
| ADediting_1142649 | chr4_6661995_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-6884-5p | chr4 | 6661991 | 6661997 | 7mer-m8 | 6661990 | 6662011 | 163 | -22.1 |
| ADediting_1142649 | chr4_6661995_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-7160-5p | chr4 | 6661994 | 6662000 | 7mer-m8 | 6661993 | 6662017 | 149 | -21.28 |
| ADediting_1142651 | chr4_6662012_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-4537 | chr4 | 6662007 | 6662014 | 8mer-1a | 6662007 | 6662028 | 154 | -23.04 |
| ADediting_1142651 | chr4_6662012_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-4537 | chr4 | 6662007 | 6662014 | 8mer-1a | 6662007 | 6662028 | 154 | -23.04 |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1142637 | chr4_6659341_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-4478 | chr4 | 6659337 | 6659343 | 7mer-m8 | 6659336 | 6659354 | 150 | -25.92 |
| ADediting_1142637 | chr4_6659341_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-4649-3p | chr4 | 6659340 | 6659346 | 7mer-m8 | 6659339 | 6659359 | 140 | -14.11 |
| ADediting_1142637 | chr4_6659341_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-485-5p | chr4 | 6659336 | 6659342 | 7mer-m8 | 6659335 | 6659357 | 153 | -16.98 |
| ADediting_1142637 | chr4_6659341_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-7160-5p | chr4 | 6659339 | 6659345 | 7mer-m8 | 6659338 | 6659358 | 146 | -17.63 |
| ADediting_1142639 | chr4_6659455_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-4318 | chr4 | 6652173 | 6659457 | 8mer-1a | 6652173 | 6659466 | 145 | -16.96 |
| ADediting_1142639 | chr4_6659455_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-4693-5p | chr4 | 6652173 | 6659456 | 7mer-m8 | 6652172 | 6659470 | 146 | -13.41 |
| ADediting_1142640 | chr4_6659469_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-30b-3p | chr4 | 6659468 | 6659475 | 8mer-1a | 6659468 | 6659489 | 151 | -15.38 |
| ADediting_1142640 | chr4_6659469_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-3189-3p | chr4 | 6659465 | 6659472 | 8mer-1a | 6659465 | 6659484 | 149 | -25.65 |
| ADediting_1142640 | chr4_6659469_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-3689a-3p | chr4 | 6659468 | 6659475 | 8mer-1a | 6659468 | 6659488 | 147 | -18.72 |
| ADediting_1142640 | chr4_6659469_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-3689b-3p | chr4 | 6659468 | 6659475 | 8mer-1a | 6659468 | 6659488 | 147 | -17.55 |
| ADediting_1142640 | chr4_6659469_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-3689c | chr4 | 6659468 | 6659475 | 8mer-1a | 6659468 | 6659488 | 147 | -17.55 |
| ADediting_1142640 | chr4_6659469_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-6779-5p | chr4 | 6659468 | 6659475 | 8mer-1a | 6659468 | 6659486 | 148 | -22.58 |
| ADediting_1142640 | chr4_6659469_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-6780a-5p | chr4 | 6659468 | 6659475 | 8mer-1a | 6659468 | 6659491 | 152 | -25.37 |
| ADediting_1142640 | chr4_6659469_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-887-5p | chr4 | 6659468 | 6659474 | 7mer-m8 | 6659467 | 6659486 | 143 | -19.73 |
| ADediting_1142640 | chr4_6659469_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-30b-3p | chr4 | 6659468 | 6659475 | 8mer-1a | 6659468 | 6659489 | 151 | -15.38 |
| ADediting_1142640 | chr4_6659469_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-3189-3p | chr4 | 6659465 | 6659472 | 8mer-1a | 6659465 | 6659484 | 149 | -25.65 |
| ADediting_1142640 | chr4_6659469_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-3689a-3p | chr4 | 6659468 | 6659475 | 8mer-1a | 6659468 | 6659488 | 147 | -18.72 |
| ADediting_1142640 | chr4_6659469_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-3689b-3p | chr4 | 6659468 | 6659475 | 8mer-1a | 6659468 | 6659488 | 147 | -17.55 |
| ADediting_1142640 | chr4_6659469_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-3689c | chr4 | 6659468 | 6659475 | 8mer-1a | 6659468 | 6659488 | 147 | -17.55 |
| ADediting_1142640 | chr4_6659469_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-6779-5p | chr4 | 6659468 | 6659475 | 8mer-1a | 6659468 | 6659486 | 148 | -22.58 |
| ADediting_1142640 | chr4_6659469_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-6780a-5p | chr4 | 6659468 | 6659475 | 8mer-1a | 6659468 | 6659491 | 152 | -25.37 |
| ADediting_1142640 | chr4_6659469_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-887-5p | chr4 | 6659468 | 6659474 | 7mer-m8 | 6659467 | 6659486 | 143 | -19.73 |
| ADediting_1142641 | chr4_6659477_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-4478 | chr4 | 6659473 | 6659479 | 7mer-m8 | 6659472 | 6659487 | 149 | -25.05 |
| ADediting_1142641 | chr4_6659477_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-4649-3p | chr4 | 6659476 | 6659482 | 7mer-m8 | 6659475 | 6659495 | 140 | -14.11 |
| ADediting_1142641 | chr4_6659477_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-7160-5p | chr4 | 6659475 | 6659481 | 7mer-m8 | 6659474 | 6659494 | 147 | -20.02 |
| ADediting_1142641 | chr4_6659477_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-4478 | chr4 | 6659473 | 6659479 | 7mer-m8 | 6659472 | 6659487 | 149 | -25.05 |
| ADediting_1142641 | chr4_6659477_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-4649-3p | chr4 | 6659476 | 6659482 | 7mer-m8 | 6659475 | 6659495 | 140 | -14.11 |
| ADediting_1142641 | chr4_6659477_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-7160-5p | chr4 | 6659475 | 6659481 | 7mer-m8 | 6659474 | 6659494 | 147 | -20.02 |
| ADediting_1142642 | chr4_6659491_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-219b-3p | chr4 | 6659487 | 6659493 | 7mer-m8 | 6659486 | 6659506 | 153 | -15.53 |
| ADediting_1142642 | chr4_6659491_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-302f | chr4 | 6659488 | 6659494 | 7mer-m8 | 6659487 | 6659503 | 145 | -8.09 |
| ADediting_1142642 | chr4_6659491_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-219b-3p | chr4 | 6659487 | 6659493 | 7mer-m8 | 6659486 | 6659506 | 153 | -15.53 |
| ADediting_1142642 | chr4_6659491_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-302f | chr4 | 6659488 | 6659494 | 7mer-m8 | 6659487 | 6659503 | 145 | -8.09 |
| ADediting_1142648 | chr4_6661988_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-1271-3p | chr4 | 6661982 | 6661989 | 8mer-1a | 6661982 | 6662003 | 146 | -19.15 |
| ADediting_1142648 | chr4_6661988_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-3689a-3p | chr4 | 6661988 | 6661994 | 7mer-m8 | 6661987 | 6662007 | 151 | -21.37 |
| ADediting_1142648 | chr4_6661988_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-550a-3-5p | chr4 | 6661982 | 6661989 | 8mer-1a | 6661982 | 6662001 | 154 | -21.15 |
| ADediting_1142648 | chr4_6661988_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-550a-5p | chr4 | 6661982 | 6661989 | 8mer-1a | 6661982 | 6662003 | 155 | -21.42 |
| ADediting_1142648 | chr4_6661988_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-661 | chr4 | 6661984 | 6661991 | 8mer-1a | 6661984 | 6662008 | 152 | -26.42 |
| ADediting_1142648 | chr4_6661988_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-6779-5p | chr4 | 6661988 | 6661994 | 7mer-m8 | 6661987 | 6662005 | 148 | -26.05 |
| ADediting_1142648 | chr4_6661988_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-6780a-5p | chr4 | 6661988 | 6661994 | 7mer-m8 | 6661987 | 6662007 | 145 | -23.72 |
| ADediting_1142648 | chr4_6661988_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-1271-3p | chr4 | 6661982 | 6661989 | 8mer-1a | 6661982 | 6662003 | 146 | -19.15 |
| ADediting_1142648 | chr4_6661988_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-3689a-3p | chr4 | 6661988 | 6661994 | 7mer-m8 | 6661987 | 6662007 | 151 | -21.37 |
| ADediting_1142648 | chr4_6661988_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-550a-3-5p | chr4 | 6661982 | 6661989 | 8mer-1a | 6661982 | 6662001 | 154 | -21.15 |
| ADediting_1142648 | chr4_6661988_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-550a-5p | chr4 | 6661982 | 6661989 | 8mer-1a | 6661982 | 6662003 | 155 | -21.42 |
| ADediting_1142648 | chr4_6661988_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-661 | chr4 | 6661984 | 6661991 | 8mer-1a | 6661984 | 6662008 | 152 | -26.42 |
| ADediting_1142648 | chr4_6661988_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-6779-5p | chr4 | 6661988 | 6661994 | 7mer-m8 | 6661987 | 6662005 | 148 | -26.05 |
| ADediting_1142648 | chr4_6661988_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-6780a-5p | chr4 | 6661988 | 6661994 | 7mer-m8 | 6661987 | 6662007 | 145 | -23.72 |
| ADediting_1142649 | chr4_6661995_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-377-5p | chr4 | 6661991 | 6661997 | 7mer-m8 | 6661990 | 6662013 | 145 | -14.35 |
| ADediting_1142649 | chr4_6661995_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-6086 | chr4 | 6661991 | 6661997 | 7mer-m8 | 6661990 | 6662009 | 146 | -23.45 |
| ADediting_1142649 | chr4_6661995_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-377-5p | chr4 | 6661991 | 6661997 | 7mer-m8 | 6661990 | 6662013 | 145 | -14.35 |
| ADediting_1142649 | chr4_6661995_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-6086 | chr4 | 6661991 | 6661997 | 7mer-m8 | 6661990 | 6662009 | 146 | -23.45 |
| ADediting_1142650 | chr4_6661996_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-377-5p | chr4 | 6661991 | 6661997 | 7mer-m8 | 6661990 | 6662013 | 145 | -14.35 |
| ADediting_1142650 | chr4_6661996_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-6086 | chr4 | 6661991 | 6661997 | 7mer-m8 | 6661990 | 6662009 | 146 | -23.45 |
| ADediting_1142650 | chr4_6661996_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-377-5p | chr4 | 6661991 | 6661997 | 7mer-m8 | 6661990 | 6662013 | 145 | -14.35 |
| ADediting_1142650 | chr4_6661996_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-6086 | chr4 | 6661991 | 6661997 | 7mer-m8 | 6661990 | 6662009 | 146 | -23.45 |
| ADediting_1142651 | chr4_6662012_- | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-3160-3p | chr4 | 6662007 | 6662014 | 8mer-1a | 6662007 | 6662028 | 153 | -16.36 |
| ADediting_1142651 | chr4_6662012_- | ENSG00000251580.3 | ENST00000667300.1 | LINC02482-207 | hsa-miR-3160-3p | chr4 | 6662007 | 6662014 | 8mer-1a | 6662007 | 6662028 | 153 | -16.36 |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-381-3p | chr4 | 6648982 | 6648988 | 7mer-m8 | 6648981 | 6652018 | 151 | -15.89 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000251580.3 | ENST00000647523.2 | LINC02482-203 | hsa-miR-381-3p | chr4 | 6648982 | 6648988 | 7mer-m8 | 6648981 | 6652018 | 151 | -15.89 |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for LINC02482 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000647523.2 | lncRNA |  |  |
| ENST00000667300.1 | lncRNA |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_1142639 | ENST00000647523.2 | chr4_6659455_- | 426 | -340.80 | -341.10 | -345.50 |
| ADediting_1142640 | ENST00000647523.2 | chr4_6659469_- | 412 | -340.80 | -341.10 | -345.50 |
| ADediting_1142641 | ENST00000647523.2 | chr4_6659477_- | 404 | -340.40 | -341.10 | -345.50 |
| ADediting_1142642 | ENST00000647523.2 | chr4_6659491_- | 390 | -340.80 | -341.10 | -345.50 |
| ADediting_1142643 | ENST00000647523.2 | chr4_6659494_- | 387 | -340.80 | -341.10 | -345.50 |
| ADediting_1142644 | ENST00000647523.2 | chr4_6659495_- | 386 | -340.80 | -341.10 | -345.50 |
| ADediting_1142647 | ENST00000647523.2 | chr4_6661981_- | 269 | -344.10 | -341.10 | -345.50 |
| ADediting_1142648 | ENST00000647523.2 | chr4_6661988_- | 262 | -344.80 | -341.10 | -345.50 |
| ADediting_1142649 | ENST00000647523.2 | chr4_6661995_- | 255 | -346.30 | -341.10 | -345.50 |
| ADediting_1142650 | ENST00000647523.2 | chr4_6661996_- | 254 | -343.60 | -341.10 | -345.50 |
| ADediting_1142651 | ENST00000647523.2 | chr4_6662012_- | 238 | -340.20 | -341.10 | -345.50 |
| ADediting_1142637 | ENST00000667300.1 | chr4_6659341_- | 373 | -598.60 | -597.60 | -620.60 |
| ADediting_1142638 | ENST00000667300.1 | chr4_6659358_- | 356 | -601.90 | -597.60 | -620.60 |
| ADediting_1142639 | ENST00000667300.1 | chr4_6659455_- | 259 | -599.00 | -597.60 | -620.60 |
| ADediting_1142640 | ENST00000667300.1 | chr4_6659469_- | 245 | -597.50 | -597.60 | -620.60 |
| ADediting_1142641 | ENST00000667300.1 | chr4_6659477_- | 237 | -597.80 | -597.60 | -620.60 |
| ADediting_1142642 | ENST00000667300.1 | chr4_6659491_- | 223 | -601.10 | -597.60 | -620.60 |
| ADediting_1142643 | ENST00000667300.1 | chr4_6659494_- | 220 | -603.70 | -597.60 | -620.60 |
| ADediting_1142644 | ENST00000667300.1 | chr4_6659495_- | 219 | -599.20 | -597.60 | -620.60 |
| ADediting_1142647 | ENST00000667300.1 | chr4_6661981_- | 102 | -600.50 | -597.60 | -620.60 |
| ADediting_1142648 | ENST00000667300.1 | chr4_6661988_- | 95 | -599.60 | -597.60 | -620.60 |
| ADediting_1142649 | ENST00000667300.1 | chr4_6661995_- | 88 | -602.40 | -597.60 | -620.60 |
| ADediting_1142650 | ENST00000667300.1 | chr4_6661996_- | 87 | -600.60 | -597.60 | -620.60 |
| ADediting_1142651 | ENST00000667300.1 | chr4_6662012_- | 71 | -600.90 | -597.60 | -620.60 |
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Relation with ADAR for LINC02482 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | ADediting_1142639 | chr4_6659455_- | 0.189096475601362 | 0.0747855930267176 | 0.79364118377305 | 0.0149164786056479 | 1.6465696465818e-08 | 0.313779013771328 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 3.37324646493536e-16 | 0.441200448343362 | 5.7019203052811e-21 | 0.49952918846738 | 6.57835999064563e-05 | 0.224678842001837 |
| AC | 2.7125135078085e-47 | 0.754676133870532 | 4.2736390292645e-33 | 0.663518956117257 | 1.09333274008119e-17 | 0.506389853384384 |
| PCC | 2.81380790917628e-12 | 0.477635173398286 | 5.10288020915715e-13 | 0.491663155660077 | 0.00217645143308171 | 0.22048952388781 |
| FP | 2.69894506852744e-09 | 0.427330787066396 | 1.714534565866e-12 | 0.496969163202922 | 0.00217200786191755 | 0.228345015752574 |
| IFG | 0.0875384351111048 | 0.34873716425627 | 0.153183381296605 | 0.294370833808534 | 0.0338961045872234 | 0.425636130771243 |
| PG | 1.40171410852004e-11 | 0.469365354544429 | 4.81202619446545e-07 | 0.359119802463614 | 0.382179369037982 | 0.0644443615043411 |
| STG | 1.38191887204828e-07 | 0.537135652027695 | 0.00107571773875655 | 0.350634214990375 | 0.0229487563963921 | 0.247971323495135 |
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Relation with AD stages for LINC02482 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
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RelatedDrugs for LINC02482 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for LINC02482 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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