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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited versus non-edited samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with AD stages

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene


Gene summary for HMG20A

check button Gene summary
Gene informationGene symbol

HMG20A

Gene ID

10363

Gene namehigh mobility group 20A
SynonymsHMGX1|HMGXB1
Cytomap

15q24.3

Type of geneprotein-coding
Descriptionhigh mobility group protein 20AHMG box domain containing 1HMG box-containing protein 20AHMG domain-containing protein 1HMG domain-containing protein HMGX1
Modification date20200313
UniProtAcc

Q9NP66,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for HMG20A

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_504442(77428716, +), ADediting_504443(77431263, +), ADediting_504444(77433214, +), ADediting_504445(77433225, +), ADediting_504446(77435410, +), ADediting_504447(77439000, +), ADediting_504448(77443162, +), ADediting_504449(77443222, +), ADediting_504450(77450260, +), ADediting_504451(77464991, +), ADediting_504452(77465045, +), ADediting_504453(77465050, +), ADediting_504454(77465058, +), ADediting_504455(77465059, +), ADediting_504456(77465082, +), ADediting_504457(77465083, +), ADediting_504458(77465084, +), ADediting_504459(77465098, +), ADediting_504460(77465141, +), ADediting_504461(77465142, +), ADediting_504462(77465155, +), ADediting_504463(77465165, +), ADediting_504464(77465168, +), ADediting_504465(77465174, +), ADediting_504466(77465183, +), ADediting_504467(77465211, +), ADediting_504468(77465215, +), ADediting_504469(77465427, +), ADediting_504470(77465457, +), ADediting_504471(77465460, +), ADediting_504472(77465465, +), ADediting_504473(77465489, +), ADediting_504474(77465496, +), ADediting_504475(77465500, +), ADediting_504476(77465513, +), ADediting_504477(77465521, +), ADediting_504478(77465522, +), ADediting_504479(77465525, +), ADediting_504480(77465535, +), ADediting_504481(77465543, +), ADediting_504482(77465562, +), ADediting_504483(77465575, +), ADediting_504484(77465604, +), ADediting_504485(77465616, +), ADediting_504486(77465617, +), ADediting_504487(77465629, +), ADediting_504488(77465630, +), ADediting_504489(77465656, +), ADediting_504490(77465657, +), ADediting_504491(77465669, +), ADediting_504492(77466117, +), ADediting_504493(77466123, +), ADediting_504494(77466166, +), ADediting_504495(77466171, +), ADediting_504496(77466194, +), ADediting_504497(77466195, +), ADediting_504498(77466202, +), ADediting_504499(77466203, +), ADediting_504500(77466205, +), ADediting_504501(77466225, +), ADediting_504502(77466234, +), ADediting_504503(77466252, +), ADediting_504504(77466282, +), ADediting_504505(77466296, +), ADediting_504506(77466302, +), ADediting_504507(77466335, +), ADediting_504508(77466370, +), ADediting_504509(77472338, +), ADediting_504510(77472339, +), ADediting_504511(77472375, +), ADediting_504512(77472379, +), ADediting_504513(77472414, +), ADediting_504514(77472432, +), ADediting_504515(77472440, +), ADediting_504516(77472441, +), ADediting_504517(77472450, +), ADediting_504518(77472456, +), ADediting_504519(77472465, +), ADediting_504520(77472473, +), ADediting_504521(77472478, +), ADediting_504522(77472537, +), ADediting_504523(77472548, +), ADediting_504524(77476219, +), ADediting_504525(77476226, +), ADediting_504526(77476227, +), ADediting_504527(77476253, +), ADediting_504528(77476280, +), ADediting_504529(77476296, +), ADediting_504530(77476317, +), ADediting_504531(77476320, +), ADediting_504532(77476325, +), ADediting_504533(77476326, +), ADediting_504534(77476328, +), ADediting_504535(77476342, +), ADediting_504536(77476365, +), ADediting_504537(77476374, +), ADediting_504538(77476417, +), ADediting_504539(77480031, +), ADediting_504540(77480059, +), ADediting_504541(77480060, +), ADediting_504542(77480064, +), ADediting_504543(77480068, +), ADediting_504544(77480090, +), ADediting_504545(77480105, +), ADediting_504546(77480113, +), ADediting_504547(77480145, +), ADediting_504548(77480149, +), ADediting_504549(77480161, +), ADediting_504550(77480177, +), ADediting_504551(77480193, +), ADediting_504552(77480194, +), ADediting_504553(77480195, +), ADediting_504554(77480217, +), ADediting_504555(77480220, +), ADediting_504556(77480238, +), ADediting_504557(77480252, +), ADediting_504558(77480279, +), ADediting_504559(77480284, +), ADediting_504560(77480352, +), ADediting_504561(77480358, +), ADediting_504562(77480490, +), ADediting_504563(77480498, +), ADediting_504564(77480502, +), ADediting_504565(77480506, +), ADediting_504566(77480519, +), ADediting_504567(77480556, +), ADediting_1540440(77465031, +), ADediting_1540441(77465147, +), ADediting_1623228(77451745, +), ADediting_1623229(77451747, +), ADediting_1623230(77453623, +), ADediting_1623231(77465476, +),

Top

RNA editing positional annotations for HMG20A using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_504442chr15_77428716_+intronic
ADediting_504443chr15_77431263_+intronic
ADediting_504444chr15_77433214_+intronic
ADediting_504445chr15_77433225_+intronic
ADediting_504446chr15_77435410_+intronic
ADediting_504447chr15_77439000_+intronic
ADediting_504448chr15_77443162_+intronic
ADediting_504449chr15_77443222_+intronic
ADediting_504450chr15_77450260_+intronic
ADediting_504451chr15_77464991_+intronic
ADediting_504452chr15_77465045_+intronic
ADediting_504453chr15_77465050_+intronic
ADediting_504454chr15_77465058_+intronic
ADediting_504455chr15_77465059_+intronic
ADediting_504456chr15_77465082_+intronic
ADediting_504457chr15_77465083_+intronic
ADediting_504458chr15_77465084_+intronic
ADediting_504459chr15_77465098_+intronic
ADediting_504460chr15_77465141_+intronic
ADediting_504461chr15_77465142_+intronic
ADediting_504462chr15_77465155_+intronic
ADediting_504463chr15_77465165_+intronic
ADediting_504464chr15_77465168_+intronic
ADediting_504465chr15_77465174_+intronic
ADediting_504466chr15_77465183_+intronic
ADediting_504467chr15_77465211_+intronic
ADediting_504468chr15_77465215_+intronic
ADediting_504469chr15_77465427_+intronic
ADediting_504470chr15_77465457_+intronic
ADediting_504471chr15_77465460_+intronic
ADediting_504472chr15_77465465_+intronic
ADediting_504473chr15_77465489_+intronic
ADediting_504474chr15_77465496_+intronic
ADediting_504475chr15_77465500_+intronic
ADediting_504476chr15_77465513_+intronic
ADediting_504477chr15_77465521_+intronic
ADediting_504478chr15_77465522_+intronic
ADediting_504479chr15_77465525_+intronic
ADediting_504480chr15_77465535_+intronic
ADediting_504481chr15_77465543_+intronic
ADediting_504482chr15_77465562_+intronic
ADediting_504483chr15_77465575_+intronic
ADediting_504484chr15_77465604_+intronic
ADediting_504485chr15_77465616_+intronic
ADediting_504486chr15_77465617_+intronic
ADediting_504487chr15_77465629_+intronic
ADediting_504488chr15_77465630_+intronic
ADediting_504489chr15_77465656_+intronic
ADediting_504490chr15_77465657_+intronic
ADediting_504491chr15_77465669_+intronic
ADediting_504492chr15_77466117_+intronic
ADediting_504493chr15_77466123_+intronic
ADediting_504494chr15_77466166_+intronic
ADediting_504495chr15_77466171_+intronic
ADediting_504496chr15_77466194_+intronic
ADediting_504497chr15_77466195_+intronic
ADediting_504498chr15_77466202_+intronic
ADediting_504499chr15_77466203_+intronic
ADediting_504500chr15_77466205_+intronic
ADediting_504501chr15_77466225_+intronic
ADediting_504502chr15_77466234_+intronic
ADediting_504503chr15_77466252_+intronic
ADediting_504504chr15_77466282_+intronic
ADediting_504505chr15_77466296_+intronic
ADediting_504506chr15_77466302_+intronic
ADediting_504507chr15_77466335_+intronic
ADediting_504508chr15_77466370_+intronic
ADediting_504509chr15_77472338_+intronic
ADediting_504510chr15_77472339_+intronic
ADediting_504511chr15_77472375_+intronic
ADediting_504512chr15_77472379_+intronic
ADediting_504513chr15_77472414_+intronic
ADediting_504514chr15_77472432_+intronic
ADediting_504515chr15_77472440_+intronic
ADediting_504516chr15_77472441_+intronic
ADediting_504517chr15_77472450_+intronic
ADediting_504518chr15_77472456_+intronic
ADediting_504519chr15_77472465_+intronic
ADediting_504520chr15_77472473_+intronic
ADediting_504521chr15_77472478_+intronic
ADediting_504522chr15_77472537_+intronic
ADediting_504523chr15_77472548_+intronic
ADediting_504524chr15_77476219_+intronic
ADediting_504525chr15_77476226_+intronic
ADediting_504526chr15_77476227_+intronic
ADediting_504527chr15_77476253_+intronic
ADediting_504528chr15_77476280_+intronic
ADediting_504529chr15_77476296_+intronic
ADediting_504530chr15_77476317_+intronic
ADediting_504531chr15_77476320_+intronic
ADediting_504532chr15_77476325_+intronic
ADediting_504533chr15_77476326_+intronic
ADediting_504534chr15_77476328_+intronic
ADediting_504535chr15_77476342_+intronic
ADediting_504536chr15_77476365_+intronic
ADediting_504537chr15_77476374_+intronic
ADediting_504538chr15_77476417_+intronic
ADediting_504539chr15_77480031_+intronic
ADediting_504540chr15_77480059_+intronic
ADediting_504541chr15_77480060_+intronic
ADediting_504542chr15_77480064_+intronic
ADediting_504543chr15_77480068_+intronic
ADediting_504544chr15_77480090_+intronic
ADediting_504545chr15_77480105_+intronic
ADediting_504546chr15_77480113_+intronic
ADediting_504547chr15_77480145_+intronic
ADediting_504548chr15_77480149_+intronic
ADediting_504549chr15_77480161_+intronic
ADediting_504550chr15_77480177_+intronic
ADediting_504551chr15_77480193_+intronic
ADediting_504552chr15_77480194_+intronic
ADediting_504553chr15_77480195_+intronic
ADediting_504554chr15_77480217_+intronic
ADediting_504555chr15_77480220_+intronic
ADediting_504556chr15_77480238_+intronic
ADediting_504557chr15_77480252_+intronic
ADediting_504558chr15_77480279_+intronic
ADediting_504559chr15_77480284_+intronic
ADediting_504560chr15_77480352_+intronic
ADediting_504561chr15_77480358_+intronic
ADediting_504562chr15_77480490_+intronic
ADediting_504563chr15_77480498_+intronic
ADediting_504564chr15_77480502_+intronic
ADediting_504565chr15_77480506_+intronic
ADediting_504566chr15_77480519_+intronic
ADediting_504567chr15_77480556_+intronic
ADediting_1540440chr15_77465031_+intronic
ADediting_1540441chr15_77465147_+intronic
ADediting_1623228chr15_77451745_+intronic
ADediting_1623229chr15_77451747_+intronic
ADediting_1623230chr15_77453623_+intronic
ADediting_1623231chr15_77465476_+intronic

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_504442chr15_77428716_+SINEAluName=AluJo
ADediting_504443chr15_77431263_+SINEAluName=AluSx
ADediting_504444chr15_77433214_+SINEAluName=AluJr4
ADediting_504445chr15_77433225_+SINEAluName=AluJr4
ADediting_504446chr15_77435410_+SINEAluName=AluSz
ADediting_504447chr15_77439000_+SINEAluName=AluY
ADediting_504448chr15_77443162_+SINEAluName=AluSx1
ADediting_504449chr15_77443222_+SINEAluName=AluSx1
ADediting_504450chr15_77450260_+SINEAluName=AluYc3
ADediting_504451chr15_77464991_+SINEAluName=AluSx
ADediting_504452chr15_77465045_+SINEAluName=AluSx
ADediting_504453chr15_77465050_+SINEAluName=AluSx
ADediting_504454chr15_77465058_+SINEAluName=AluSx
ADediting_504455chr15_77465059_+SINEAluName=AluSx
ADediting_504456chr15_77465082_+SINEAluName=AluSx
ADediting_504457chr15_77465083_+SINEAluName=AluSx
ADediting_504458chr15_77465084_+SINEAluName=AluSx
ADediting_504459chr15_77465098_+SINEAluName=AluSx
ADediting_504460chr15_77465141_+SINEAluName=AluSx
ADediting_504461chr15_77465142_+SINEAluName=AluSx
ADediting_504462chr15_77465155_+SINEAluName=AluSx
ADediting_504463chr15_77465165_+SINEAluName=AluSx
ADediting_504464chr15_77465168_+SINEAluName=AluSx
ADediting_504465chr15_77465174_+SINEAluName=AluSx
ADediting_504466chr15_77465183_+SINEAluName=AluSx
ADediting_504467chr15_77465211_+SINEAluName=AluSx
ADediting_504468chr15_77465215_+SINEAluName=AluSx
ADediting_504469chr15_77465427_+SINEAluName=AluSz
ADediting_504470chr15_77465457_+SINEAluName=AluSz
ADediting_504471chr15_77465460_+SINEAluName=AluSz
ADediting_504472chr15_77465465_+SINEAluName=AluSz
ADediting_504473chr15_77465489_+SINEAluName=AluSz
ADediting_504474chr15_77465496_+SINEAluName=AluSz
ADediting_504475chr15_77465500_+SINEAluName=AluSz
ADediting_504476chr15_77465513_+SINEAluName=AluSz
ADediting_504477chr15_77465521_+SINEAluName=AluSz
ADediting_504478chr15_77465522_+SINEAluName=AluSz
ADediting_504479chr15_77465525_+SINEAluName=AluSz
ADediting_504480chr15_77465535_+SINEAluName=AluSz
ADediting_504481chr15_77465543_+SINEAluName=AluSz
ADediting_504482chr15_77465562_+SINEAluName=AluSz
ADediting_504483chr15_77465575_+SINEAluName=AluSz
ADediting_504484chr15_77465604_+SINEAluName=AluSz
ADediting_504485chr15_77465616_+SINEAluName=AluSz
ADediting_504486chr15_77465617_+SINEAluName=AluSz
ADediting_504487chr15_77465629_+SINEAluName=AluSz
ADediting_504488chr15_77465630_+SINEAluName=AluSz
ADediting_504489chr15_77465656_+SINEAluName=AluSz
ADediting_504490chr15_77465657_+SINEAluName=AluSz
ADediting_504491chr15_77465669_+SINEAluName=AluSz
ADediting_504492chr15_77466117_+SINEAluName=AluSp
ADediting_504493chr15_77466123_+SINEAluName=AluSp
ADediting_504494chr15_77466166_+SINEAluName=AluSp
ADediting_504495chr15_77466171_+SINEAluName=AluSp
ADediting_504496chr15_77466194_+SINEAluName=AluSp
ADediting_504497chr15_77466195_+SINEAluName=AluSp
ADediting_504498chr15_77466202_+SINEAluName=AluSp
ADediting_504499chr15_77466203_+SINEAluName=AluSp
ADediting_504500chr15_77466205_+SINEAluName=AluSp
ADediting_504501chr15_77466225_+SINEAluName=AluSp
ADediting_504502chr15_77466234_+SINEAluName=AluSp
ADediting_504503chr15_77466252_+SINEAluName=AluSp
ADediting_504504chr15_77466282_+SINEAluName=AluSp
ADediting_504505chr15_77466296_+SINEAluName=AluSp
ADediting_504506chr15_77466302_+SINEAluName=AluSp
ADediting_504507chr15_77466335_+SINEAluName=AluSp
ADediting_504508chr15_77466370_+SINEAluName=AluSp
ADediting_504509chr15_77472338_+SINEAluName=AluSc8
ADediting_504510chr15_77472339_+SINEAluName=AluSc8
ADediting_504511chr15_77472375_+SINEAluName=AluSc8
ADediting_504512chr15_77472379_+SINEAluName=AluSc8
ADediting_504513chr15_77472414_+SINEAluName=AluSc8
ADediting_504514chr15_77472432_+SINEAluName=AluSc8
ADediting_504515chr15_77472440_+SINEAluName=AluSc8
ADediting_504516chr15_77472441_+SINEAluName=AluSc8
ADediting_504517chr15_77472450_+SINEAluName=AluSc8
ADediting_504518chr15_77472456_+SINEAluName=AluSc8
ADediting_504519chr15_77472465_+SINEAluName=AluSc8
ADediting_504520chr15_77472473_+SINEAluName=AluSc8
ADediting_504521chr15_77472478_+SINEAluName=AluSc8
ADediting_504522chr15_77472537_+SINEAluName=AluSc8
ADediting_504523chr15_77472548_+SINEAluName=AluSc8
ADediting_504524chr15_77476219_+SINEAluName=AluSx1
ADediting_504525chr15_77476226_+SINEAluName=AluSx1
ADediting_504526chr15_77476227_+SINEAluName=AluSx1
ADediting_504527chr15_77476253_+SINEAluName=AluSx1
ADediting_504528chr15_77476280_+SINEAluName=AluSx1
ADediting_504529chr15_77476296_+SINEAluName=AluSx1
ADediting_504530chr15_77476317_+SINEAluName=AluSx1
ADediting_504531chr15_77476320_+SINEAluName=AluSx1
ADediting_504532chr15_77476325_+SINEAluName=AluSx1
ADediting_504533chr15_77476326_+SINEAluName=AluSx1
ADediting_504534chr15_77476328_+SINEAluName=AluSx1
ADediting_504535chr15_77476342_+SINEAluName=AluSx1
ADediting_504536chr15_77476365_+SINEAluName=AluSx1
ADediting_504537chr15_77476374_+SINEAluName=AluSx1
ADediting_504538chr15_77476417_+SINEAluName=AluSx1
ADediting_504539chr15_77480031_+SINEAluName=AluJb
ADediting_504540chr15_77480059_+SINEAluName=AluJb
ADediting_504541chr15_77480060_+SINEAluName=AluJb
ADediting_504542chr15_77480064_+SINEAluName=AluJb
ADediting_504543chr15_77480068_+SINEAluName=AluJb
ADediting_504544chr15_77480090_+SINEAluName=AluJb
ADediting_504545chr15_77480105_+SINEAluName=AluJb
ADediting_504546chr15_77480113_+SINEAluName=AluJb
ADediting_504547chr15_77480145_+SINEAluName=AluJb
ADediting_504548chr15_77480149_+SINEAluName=AluJb
ADediting_504549chr15_77480161_+SINEAluName=AluJb
ADediting_504550chr15_77480177_+SINEAluName=AluJb
ADediting_504551chr15_77480193_+SINEAluName=AluJb
ADediting_504552chr15_77480194_+SINEAluName=AluJb
ADediting_504553chr15_77480195_+SINEAluName=AluJb
ADediting_504554chr15_77480217_+SINEAluName=AluJb
ADediting_504555chr15_77480220_+SINEAluName=AluJb
ADediting_504556chr15_77480238_+SINEAluName=AluJb
ADediting_504557chr15_77480252_+SINEAluName=AluJb
ADediting_504558chr15_77480279_+SINEAluName=AluJb
ADediting_504559chr15_77480284_+SINEAluName=AluJb
ADediting_504560chr15_77480352_+SINEAluName=AluJo
ADediting_504561chr15_77480358_+SINEAluName=AluJo
ADediting_504562chr15_77480490_+SINEAluName=AluJo
ADediting_504563chr15_77480498_+SINEAluName=AluJo
ADediting_504564chr15_77480502_+SINEAluName=AluJo
ADediting_504565chr15_77480506_+SINEAluName=AluJo
ADediting_504566chr15_77480519_+SINEAluName=AluJo
ADediting_504567chr15_77480556_+SINEAluName=AluJo
ADediting_1540440chr15_77465031_+SINEAluName=AluSx
ADediting_1540441chr15_77465147_+SINEAluName=AluSx
ADediting_1623228chr15_77451745_+LINEL2Name=L2a
ADediting_1623229chr15_77451747_+LINEL2Name=L2a
ADediting_1623230chr15_77453623_+LINEL1Name=L1MB7
ADediting_1623231chr15_77465476_+SINEAluName=AluSz

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RNA A-to-I editing events in the alternative splicing sites for HMG20A

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for HMG20A

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
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check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
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check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
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ADeditome IDChrPositoingSkipped exonENSGENSTs

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Protein coding region RNA A-to-I editings for HMG20A

check button- Lollipop plot for RNA A-to-I editings across protein structure.
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The effects of the RNA editing to the miRNA binding sites for HMG20A


check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1535953chr14_101045971_+ENSG00000140382.15ENST00000336216.9HMG20A-201hsa-miR-381-3pchr1577483498774835047mer-m87748348777483505160-20.63
ADediting_1535953chr14_101045971_+ENSG00000140382.15ENST00000381714.7HMG20A-202hsa-miR-381-3pchr1577483498774835047mer-m87748348777483505160-20.63
ADediting_1631458chr19_40282624_-ENSG00000140382.15ENST00000336216.9HMG20A-201hsa-miR-641chr1577483981774839877mer-m87748396477483988152-17.37
ADediting_1631458chr19_40282624_-ENSG00000140382.15ENST00000381714.7HMG20A-202hsa-miR-641chr1577483981774839877mer-m87748396477483988152-17.37
ADediting_98288chr1_32086990_+ENSG00000140382.15ENST00000336216.9HMG20A-201hsa-miR-5585-3pchr1577485149774851557mer-m87748513177485156159-24.43
ADediting_98288chr1_32086990_+ENSG00000140382.15ENST00000381714.7HMG20A-202hsa-miR-5585-3pchr1577485149774851557mer-m87748513177485156159-24.43

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1556067chr19_40282625_-ENSG00000140382.15ENST00000336216.9HMG20A-201hsa-miR-641chr1577483776774837827mer-m87748375877483783151-11.58
ADediting_1556067chr19_40282625_-ENSG00000140382.15ENST00000336216.9HMG20A-201hsa-miR-641chr1577484608774846158mer-1a7748458877484615149-12.94
ADediting_1556067chr19_40282625_-ENSG00000140382.15ENST00000381714.7HMG20A-202hsa-miR-641chr1577483776774837827mer-m87748375877483783151-11.58
ADediting_1556067chr19_40282625_-ENSG00000140382.15ENST00000381714.7HMG20A-202hsa-miR-641chr1577484608774846158mer-1a7748458877484615149-12.94
ADediting_1631458chr19_40282624_-ENSG00000140382.15ENST00000336216.9HMG20A-201hsa-miR-641chr1577483776774837827mer-m87748375877483783151-11.58
ADediting_1631458chr19_40282624_-ENSG00000140382.15ENST00000336216.9HMG20A-201hsa-miR-641chr1577484608774846158mer-1a7748458877484615149-12.94
ADediting_1631458chr19_40282624_-ENSG00000140382.15ENST00000381714.7HMG20A-202hsa-miR-641chr1577483776774837827mer-m87748375877483783151-11.58
ADediting_1631458chr19_40282624_-ENSG00000140382.15ENST00000381714.7HMG20A-202hsa-miR-641chr1577484608774846158mer-1a7748458877484615149-12.94
ADediting_291761chr11_93733708_-ENSG00000140382.15ENST00000336216.9HMG20A-201hsa-miR-1304-3pchr1577483094774831007mer-m87748307977483101142-13.28
ADediting_291761chr11_93733708_-ENSG00000140382.15ENST00000336216.9HMG20A-201hsa-miR-1304-3pchr1577485243774852497mer-m87748523077485250151-16.7
ADediting_291761chr11_93733708_-ENSG00000140382.15ENST00000381714.7HMG20A-202hsa-miR-1304-3pchr1577483094774831007mer-m87748307977483101142-13.28
ADediting_291761chr11_93733708_-ENSG00000140382.15ENST00000381714.7HMG20A-202hsa-miR-1304-3pchr1577485243774852497mer-m87748523077485250151-16.7
ADediting_527135chr16_24203190_+ENSG00000140382.15ENST00000336216.9HMG20A-201hsa-miR-1273h-3pchr1577484793774848008mer-1a7748477977484800144-12.12
ADediting_527135chr16_24203190_+ENSG00000140382.15ENST00000381714.7HMG20A-202hsa-miR-1273h-3pchr1577484793774848008mer-1a7748477977484800144-12.12
ADediting_98288chr1_32086990_+ENSG00000140382.15ENST00000336216.9HMG20A-201hsa-miR-5585-3pchr1577485355774853617mer-m87748534077485362147-14.25
ADediting_98288chr1_32086990_+ENSG00000140382.15ENST00000381714.7HMG20A-202hsa-miR-5585-3pchr1577485355774853617mer-m87748534077485362147-14.25
ADediting_98289chr1_32086992_+ENSG00000140382.15ENST00000336216.9HMG20A-201hsa-miR-5585-3pchr1577485355774853617mer-m87748534077485362147-14.25
ADediting_98289chr1_32086992_+ENSG00000140382.15ENST00000381714.7HMG20A-202hsa-miR-5585-3pchr1577485355774853617mer-m87748534077485362147-14.25

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for HMG20A

check button - RNA A-to-I editing in mRNA.
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ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for HMG20A

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFCADediting_504460chr15_77465141_+0.667506027483830.02449341336056390.381417032315054-0.04988359844509313.85069518352495e-080.305957346530332
DLPFCADediting_504478chr15_77465522_+0.452395310817712-0.0428316643151660.0142747168807818-0.1390512785948017.79950739010648e-100.340143241285278
DLPFCADediting_504480chr15_77465535_+0.4552815926825680.04255894734366790.128132826843775-0.08660317641783293.66827871864171e-160.440709522180329
DLPFCADediting_504495chr15_77466171_+0.883826952452484-0.008332554591971180.187141840323286-0.07511636679432597.13917561933997e-080.300126444444015
DLPFCADediting_504504chr15_77466282_+0.409354681797855-0.04702257670229020.0701027349461605-0.1030141887787757.13610220431523e-080.300130556475988
DLPFCADediting_504507chr15_77466335_+0.03525865202446780.1196308122738390.2139799115174950.0707777637579571.60645728327961e-080.31400271777962
DLPFCADediting_504519chr15_77472465_+0.8351151216065520.01186942055726590.0919068013524041-0.0958923210900661.25961330405345e-140.419245267461469
DLPFCADediting_504522chr15_77472537_+0.754581358210616-0.01782532683300760.0361664626422491-0.1190483549533777.77964296371376e-140.407567965740043
DLPFCADediting_504523chr15_77472548_+0.556685193747937-0.03350921114217410.0183635762621359-0.1338743855248664.01916180355593e-110.363600693986616
DLPFCADediting_504526chr15_77476227_+0.4916479545943780.03920152142851920.163657878497729-0.07930565551673784.40713365718002e-110.36290002429729
DLPFCADediting_504527chr15_77476253_+0.637769056951251-0.02684442215238620.00682894516127476-0.1533475535879761.49685522375337e-110.371005976146957
DLPFCADediting_504528chr15_77476280_+0.6499433125800210.02587665195974490.0406272193498556-0.1163544603989111.43523894032582e-150.432608503714814
TCXADediting_504548chr15_77480149_+0.002393848103525320.2461575918925670.0001387012101271850.3061792545080350.0271145566181657-0.180460290268231
TCXADediting_504562chr15_77480490_+0.0007668197982369590.271793986321453.02335822946366e-060.370671294355530.0334749607333548-0.173745676910143

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFC3.97795728697127e-940.8647304078109817.05472046320154e-840.8402624519742460.5846510116321130.0311633562353794
AC3.8501319547307e-1100.9304718806503545.11684016201785e-660.8340956219777931.53748727770076e-100.390630458445367
PCC9.80140060535733e-780.9177769463456945.53060272065993e-610.8734726880130970.007081821120956280.194271851244662
CER8.18119187519736e-390.8268130957437681.30457710870123e-130.5572233862832740.2484369479728580.0948170086728705
TCX3.79628457814727e-510.8855829025300771.91207445608561e-170.6222194235420140.1096396191016560.131156627034684
FP7.81949132546539e-530.8581140857428342.98397224444093e-210.6321656824119220.005158005811960710.208799004519302
IFG3.15294928619031e-050.7323669248684210.01434195467859840.483497357017670.687392895095795-0.084669083491966
PG4.02792317878375e-720.909644399645791.2666431141408e-350.7554493341371110.9695082095590080.00282181742802102
STG6.68344631113814e-320.9034368490555415.71967314151848e-170.7593257776909760.06319614349079790.203625368210068

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Relation with AD stages for HMG20A

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.
IFGADediting_504562chr15_77480490_+0.0204804253090704-0.4606625452601

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.

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RelatedDrugs for HMG20A

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for HMG20A

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
HMG20AC0011860Diabetes Mellitus, Non-Insulin-Dependent1CTD_human