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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for SPACA6P-AS |
 Gene summary |
| Gene information | Gene symbol | SPACA6P-AS | Gene ID | 102238594 |
| Gene name | SPACA6P antisense RNA | |
| Synonyms | LINC01129 | |
| Cytomap | 19q13.41 | |
| Type of gene | ncRNA | |
| Description | long intergenic non-protein coding RNA 1129 | |
| Modification date | 20200313 | |
| UniProtAcc | ||
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for SPACA6P-AS |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_776189(51685610, -), ADediting_776190(51685754, -), ADediting_776191(51685763, -), ADediting_776192(51685768, -), ADediting_776193(51685843, -), ADediting_776194(51687179, -), ADediting_1557801(51685637, -), |
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RNA editing positional annotations for SPACA6P-AS using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_776189 | chr19_51685610_- | ncRNA_exonic |
| ADediting_776190 | chr19_51685754_- | ncRNA_exonic |
| ADediting_776191 | chr19_51685763_- | ncRNA_exonic |
| ADediting_776192 | chr19_51685768_- | ncRNA_exonic |
| ADediting_776193 | chr19_51685843_- | ncRNA_exonic |
| ADediting_776194 | chr19_51687179_- | ncRNA_exonic |
| ADediting_1557801 | chr19_51685637_- | ncRNA_exonic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_776189 | chr19_51685610_- | SINE | Alu | Name=AluJb |
| ADediting_776190 | chr19_51685754_- | SINE | Alu | Name=AluJb |
| ADediting_776191 | chr19_51685763_- | SINE | Alu | Name=AluJb |
| ADediting_776192 | chr19_51685768_- | SINE | Alu | Name=AluJb |
| ADediting_776193 | chr19_51685843_- | DNA | TcMar-Tigger | Name=Tigger4b |
| ADediting_776194 | chr19_51687179_- | SINE | Alu | Name=AluSz |
| ADediting_1557801 | chr19_51685637_- | SINE | Alu | Name=AluJb |
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RNA A-to-I editing events in the alternative splicing sites for SPACA6P-AS |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SPACA6P-AS |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |