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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited versus non-edited samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with AD stages

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene


Gene summary for FAM111A-DT

check button Gene summary
Gene informationGene symbol

FAM111A-DT

Gene ID

101927204

Gene nameFAM111A divergent transcript
Synonyms-
Cytomap

11q12.1

Type of genencRNA
Description-
Modification date20200313
UniProtAcc

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for FAM111A-DT

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_259715(59130261, -), ADediting_259716(59130310, -), ADediting_259717(59130311, -), ADediting_259718(59130312, -), ADediting_259719(59130319, -), ADediting_259720(59130320, -), ADediting_259721(59130324, -), ADediting_259722(59130331, -), ADediting_259723(59130332, -), ADediting_259724(59130337, -), ADediting_259725(59130338, -), ADediting_259726(59130339, -), ADediting_259727(59130343, -), ADediting_259728(59130349, -), ADediting_259729(59130350, -), ADediting_259730(59130353, -), ADediting_259731(59130354, -), ADediting_259732(59130363, -), ADediting_259733(59130366, -), ADediting_259734(59130368, -), ADediting_259735(59130376, -), ADediting_259736(59130377, -), ADediting_259737(59130400, -), ADediting_259738(59130402, -), ADediting_259739(59130407, -), ADediting_259740(59130408, -), ADediting_259741(59130416, -), ADediting_259742(59130427, -), ADediting_259743(59130433, -), ADediting_259744(59130434, -), ADediting_259745(59130443, -), ADediting_259746(59130444, -), ADediting_259747(59130445, -), ADediting_259748(59130450, -), ADediting_259749(59130453, -), ADediting_259750(59130456, -), ADediting_259751(59130463, -), ADediting_259752(59130473, -), ADediting_259753(59130479, -), ADediting_259754(59130480, -), ADediting_259755(59130481, -), ADediting_259756(59130622, -), ADediting_259757(59130629, -), ADediting_259758(59130670, -), ADediting_259759(59130672, -), ADediting_259760(59130701, -), ADediting_259761(59130794, -), ADediting_259762(59130911, -), ADediting_259763(59130931, -), ADediting_259764(59130941, -), ADediting_259765(59131002, -), ADediting_259766(59131003, -), ADediting_259767(59131010, -), ADediting_259768(59131014, -), ADediting_259769(59131021, -), ADediting_259770(59131033, -), ADediting_259771(59131127, -), ADediting_259772(59131130, -), ADediting_259773(59131134, -), ADediting_259774(59131139, -), ADediting_259775(59131140, -), ADediting_259776(59131141, -), ADediting_259777(59131163, -), ADediting_259778(59131190, -), ADediting_259779(59131191, -), ADediting_259780(59131333, -), ADediting_259781(59131381, -), ADediting_259782(59131404, -), ADediting_259783(59131418, -), ADediting_259784(59131420, -), ADediting_259785(59131429, -), ADediting_259786(59131443, -), ADediting_259787(59131447, -), ADediting_259788(59131465, -), ADediting_259789(59131549, -), ADediting_259790(59132606, -), ADediting_259791(59132623, -), ADediting_259792(59132633, -), ADediting_259793(59132634, -), ADediting_259794(59132652, -), ADediting_259795(59132901, -), ADediting_259796(59133143, -), ADediting_259797(59133151, -), ADediting_259798(59133173, -), ADediting_259799(59133210, -), ADediting_259800(59133234, -), ADediting_259801(59133248, -), ADediting_259802(59133252, -), ADediting_1527119(59130325, -), ADediting_1527120(59130344, -), ADediting_1527121(59130362, -), ADediting_1527122(59130462, -), ADediting_1527123(59130860, -), ADediting_1527124(59130929, -), ADediting_1527125(59130954, -), ADediting_1527126(59131011, -), ADediting_1527127(59131034, -), ADediting_1527128(59131097, -), ADediting_1527129(59131161, -), ADediting_1527130(59131164, -), ADediting_1527131(59131326, -), ADediting_1527132(59131386, -), ADediting_1527133(59131405, -), ADediting_1527134(59132619, -), ADediting_1527135(59132670, -), ADediting_1527136(59132671, -), ADediting_1527137(59132673, -), ADediting_1527138(59132689, -), ADediting_1527139(59132778, -), ADediting_1527140(59132794, -), ADediting_1527141(59132795, -), ADediting_1527142(59132810, -), ADediting_1527143(59132811, -), ADediting_1527144(59132817, -), ADediting_1527145(59132818, -), ADediting_1527146(59132832, -), ADediting_1527147(59132835, -), ADediting_1527148(59132836, -), ADediting_1527149(59132861, -), ADediting_1527150(59132890, -), ADediting_1527151(59132919, -), ADediting_1527152(59132920, -), ADediting_1527153(59132924, -), ADediting_1527154(59132931, -), ADediting_1527155(59132945, -), ADediting_1527156(59132991, -), ADediting_1527157(59133089, -), ADediting_1527158(59133092, -), ADediting_1527159(59133115, -), ADediting_1527160(59133118, -), ADediting_1527161(59133124, -), ADediting_1527162(59133144, -), ADediting_1527163(59133155, -), ADediting_1527164(59133200, -), ADediting_1527165(59133202, -), ADediting_1527166(59133204, -), ADediting_1527167(59133215, -), ADediting_1527168(59133253, -), ADediting_1527169(59133255, -), ADediting_1527170(59133269, -), ADediting_1527171(59133270, -), ADediting_1527172(59133314, -), ADediting_1527173(59133380, -), ADediting_1527174(59133396, -), ADediting_1527175(59133397, -), ADediting_1527176(59133399, -), ADediting_1527177(59133414, -), ADediting_1527178(59133424, -), ADediting_1527179(59133428, -), ADediting_1527180(59133433, -), ADediting_1527181(59133444, -), ADediting_1527182(59133500, -), ADediting_1527183(59133561, -),

Top

RNA editing positional annotations for FAM111A-DT using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_259715chr11_59130261_-ncRNA_exonic
ADediting_259716chr11_59130310_-ncRNA_intronic
ADediting_259717chr11_59130311_-ncRNA_intronic
ADediting_259718chr11_59130312_-ncRNA_intronic
ADediting_259719chr11_59130319_-ncRNA_intronic
ADediting_259720chr11_59130320_-ncRNA_intronic
ADediting_259721chr11_59130324_-ncRNA_intronic
ADediting_259722chr11_59130331_-ncRNA_intronic
ADediting_259723chr11_59130332_-ncRNA_intronic
ADediting_259724chr11_59130337_-ncRNA_intronic
ADediting_259725chr11_59130338_-ncRNA_intronic
ADediting_259726chr11_59130339_-ncRNA_intronic
ADediting_259727chr11_59130343_-ncRNA_intronic
ADediting_259728chr11_59130349_-ncRNA_intronic
ADediting_259729chr11_59130350_-ncRNA_intronic
ADediting_259730chr11_59130353_-ncRNA_intronic
ADediting_259731chr11_59130354_-ncRNA_intronic
ADediting_259732chr11_59130363_-ncRNA_intronic
ADediting_259733chr11_59130366_-ncRNA_intronic
ADediting_259734chr11_59130368_-ncRNA_intronic
ADediting_259735chr11_59130376_-ncRNA_intronic
ADediting_259736chr11_59130377_-ncRNA_intronic
ADediting_259737chr11_59130400_-ncRNA_intronic
ADediting_259738chr11_59130402_-ncRNA_intronic
ADediting_259739chr11_59130407_-ncRNA_intronic
ADediting_259740chr11_59130408_-ncRNA_intronic
ADediting_259741chr11_59130416_-ncRNA_intronic
ADediting_259742chr11_59130427_-ncRNA_intronic
ADediting_259743chr11_59130433_-ncRNA_intronic
ADediting_259744chr11_59130434_-ncRNA_intronic
ADediting_259745chr11_59130443_-ncRNA_intronic
ADediting_259746chr11_59130444_-ncRNA_intronic
ADediting_259747chr11_59130445_-ncRNA_intronic
ADediting_259748chr11_59130450_-ncRNA_intronic
ADediting_259749chr11_59130453_-ncRNA_intronic
ADediting_259750chr11_59130456_-ncRNA_intronic
ADediting_259751chr11_59130463_-ncRNA_intronic
ADediting_259752chr11_59130473_-ncRNA_intronic
ADediting_259753chr11_59130479_-ncRNA_intronic
ADediting_259754chr11_59130480_-ncRNA_intronic
ADediting_259755chr11_59130481_-ncRNA_intronic
ADediting_259756chr11_59130622_-ncRNA_intronic
ADediting_259757chr11_59130629_-ncRNA_intronic
ADediting_259758chr11_59130670_-ncRNA_intronic
ADediting_259759chr11_59130672_-ncRNA_intronic
ADediting_259760chr11_59130701_-ncRNA_intronic
ADediting_259761chr11_59130794_-ncRNA_intronic
ADediting_259762chr11_59130911_-ncRNA_intronic
ADediting_259763chr11_59130931_-ncRNA_intronic
ADediting_259764chr11_59130941_-ncRNA_intronic
ADediting_259765chr11_59131002_-ncRNA_intronic
ADediting_259766chr11_59131003_-ncRNA_intronic
ADediting_259767chr11_59131010_-ncRNA_intronic
ADediting_259768chr11_59131014_-ncRNA_intronic
ADediting_259769chr11_59131021_-ncRNA_intronic
ADediting_259770chr11_59131033_-ncRNA_intronic
ADediting_259771chr11_59131127_-ncRNA_intronic
ADediting_259772chr11_59131130_-ncRNA_intronic
ADediting_259773chr11_59131134_-ncRNA_intronic
ADediting_259774chr11_59131139_-ncRNA_intronic
ADediting_259775chr11_59131140_-ncRNA_intronic
ADediting_259776chr11_59131141_-ncRNA_intronic
ADediting_259777chr11_59131163_-ncRNA_intronic
ADediting_259778chr11_59131190_-ncRNA_intronic
ADediting_259779chr11_59131191_-ncRNA_intronic
ADediting_259780chr11_59131333_-ncRNA_intronic
ADediting_259781chr11_59131381_-ncRNA_intronic
ADediting_259782chr11_59131404_-ncRNA_intronic
ADediting_259783chr11_59131418_-ncRNA_intronic
ADediting_259784chr11_59131420_-ncRNA_intronic
ADediting_259785chr11_59131429_-ncRNA_intronic
ADediting_259786chr11_59131443_-ncRNA_intronic
ADediting_259787chr11_59131447_-ncRNA_intronic
ADediting_259788chr11_59131465_-ncRNA_intronic
ADediting_259789chr11_59131549_-ncRNA_intronic
ADediting_259790chr11_59132606_-ncRNA_intronic
ADediting_259791chr11_59132623_-ncRNA_intronic
ADediting_259792chr11_59132633_-ncRNA_intronic
ADediting_259793chr11_59132634_-ncRNA_intronic
ADediting_259794chr11_59132652_-ncRNA_intronic
ADediting_259795chr11_59132901_-ncRNA_intronic
ADediting_259796chr11_59133143_-ncRNA_intronic
ADediting_259797chr11_59133151_-ncRNA_intronic
ADediting_259798chr11_59133173_-ncRNA_intronic
ADediting_259799chr11_59133210_-ncRNA_intronic
ADediting_259800chr11_59133234_-ncRNA_intronic
ADediting_259801chr11_59133248_-ncRNA_intronic
ADediting_259802chr11_59133252_-ncRNA_intronic
ADediting_1527119chr11_59130325_-ncRNA_intronic
ADediting_1527120chr11_59130344_-ncRNA_intronic
ADediting_1527121chr11_59130362_-ncRNA_intronic
ADediting_1527122chr11_59130462_-ncRNA_intronic
ADediting_1527123chr11_59130860_-ncRNA_intronic
ADediting_1527124chr11_59130929_-ncRNA_intronic
ADediting_1527125chr11_59130954_-ncRNA_intronic
ADediting_1527126chr11_59131011_-ncRNA_intronic
ADediting_1527127chr11_59131034_-ncRNA_intronic
ADediting_1527128chr11_59131097_-ncRNA_intronic
ADediting_1527129chr11_59131161_-ncRNA_intronic
ADediting_1527130chr11_59131164_-ncRNA_intronic
ADediting_1527131chr11_59131326_-ncRNA_intronic
ADediting_1527132chr11_59131386_-ncRNA_intronic
ADediting_1527133chr11_59131405_-ncRNA_intronic
ADediting_1527134chr11_59132619_-ncRNA_intronic
ADediting_1527135chr11_59132670_-ncRNA_intronic
ADediting_1527136chr11_59132671_-ncRNA_intronic
ADediting_1527137chr11_59132673_-ncRNA_intronic
ADediting_1527138chr11_59132689_-ncRNA_intronic
ADediting_1527139chr11_59132778_-ncRNA_intronic
ADediting_1527140chr11_59132794_-ncRNA_intronic
ADediting_1527141chr11_59132795_-ncRNA_intronic
ADediting_1527142chr11_59132810_-ncRNA_intronic
ADediting_1527143chr11_59132811_-ncRNA_intronic
ADediting_1527144chr11_59132817_-ncRNA_intronic
ADediting_1527145chr11_59132818_-ncRNA_intronic
ADediting_1527146chr11_59132832_-ncRNA_intronic
ADediting_1527147chr11_59132835_-ncRNA_intronic
ADediting_1527148chr11_59132836_-ncRNA_intronic
ADediting_1527149chr11_59132861_-ncRNA_intronic
ADediting_1527150chr11_59132890_-ncRNA_intronic
ADediting_1527151chr11_59132919_-ncRNA_intronic
ADediting_1527152chr11_59132920_-ncRNA_intronic
ADediting_1527153chr11_59132924_-ncRNA_intronic
ADediting_1527154chr11_59132931_-ncRNA_intronic
ADediting_1527155chr11_59132945_-ncRNA_intronic
ADediting_1527156chr11_59132991_-ncRNA_intronic
ADediting_1527157chr11_59133089_-ncRNA_intronic
ADediting_1527158chr11_59133092_-ncRNA_intronic
ADediting_1527159chr11_59133115_-ncRNA_intronic
ADediting_1527160chr11_59133118_-ncRNA_intronic
ADediting_1527161chr11_59133124_-ncRNA_intronic
ADediting_1527162chr11_59133144_-ncRNA_intronic
ADediting_1527163chr11_59133155_-ncRNA_intronic
ADediting_1527164chr11_59133200_-ncRNA_intronic
ADediting_1527165chr11_59133202_-ncRNA_intronic
ADediting_1527166chr11_59133204_-ncRNA_intronic
ADediting_1527167chr11_59133215_-ncRNA_intronic
ADediting_1527168chr11_59133253_-ncRNA_intronic
ADediting_1527169chr11_59133255_-ncRNA_intronic
ADediting_1527170chr11_59133269_-ncRNA_intronic
ADediting_1527171chr11_59133270_-ncRNA_intronic
ADediting_1527172chr11_59133314_-ncRNA_intronic
ADediting_1527173chr11_59133380_-ncRNA_intronic
ADediting_1527174chr11_59133396_-ncRNA_intronic
ADediting_1527175chr11_59133397_-ncRNA_intronic
ADediting_1527176chr11_59133399_-ncRNA_intronic
ADediting_1527177chr11_59133414_-ncRNA_intronic
ADediting_1527178chr11_59133424_-ncRNA_intronic
ADediting_1527179chr11_59133428_-ncRNA_intronic
ADediting_1527180chr11_59133433_-ncRNA_intronic
ADediting_1527181chr11_59133444_-ncRNA_intronic
ADediting_1527182chr11_59133500_-ncRNA_intronic
ADediting_1527183chr11_59133561_-ncRNA_intronic

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_259715chr11_59130261_-LTRERVL-MaLRName=THE1C-int
ADediting_259716chr11_59130310_-LTRERVL-MaLRName=THE1C-int
ADediting_259717chr11_59130311_-LTRERVL-MaLRName=THE1C-int
ADediting_259718chr11_59130312_-LTRERVL-MaLRName=THE1C-int
ADediting_259719chr11_59130319_-LTRERVL-MaLRName=THE1C-int
ADediting_259720chr11_59130320_-LTRERVL-MaLRName=THE1C-int
ADediting_259721chr11_59130324_-LTRERVL-MaLRName=THE1C-int
ADediting_259722chr11_59130331_-LTRERVL-MaLRName=THE1C-int
ADediting_259723chr11_59130332_-LTRERVL-MaLRName=THE1C-int
ADediting_259724chr11_59130337_-LTRERVL-MaLRName=THE1C-int
ADediting_259725chr11_59130338_-LTRERVL-MaLRName=THE1C-int
ADediting_259726chr11_59130339_-LTRERVL-MaLRName=THE1C-int
ADediting_259727chr11_59130343_-LTRERVL-MaLRName=THE1C-int
ADediting_259728chr11_59130349_-LTRERVL-MaLRName=THE1C-int
ADediting_259729chr11_59130350_-LTRERVL-MaLRName=THE1C-int
ADediting_259730chr11_59130353_-LTRERVL-MaLRName=THE1C-int
ADediting_259731chr11_59130354_-LTRERVL-MaLRName=THE1C-int
ADediting_259732chr11_59130363_-LTRERVL-MaLRName=THE1C-int
ADediting_259733chr11_59130366_-LTRERVL-MaLRName=THE1C-int
ADediting_259734chr11_59130368_-LTRERVL-MaLRName=THE1C-int
ADediting_259735chr11_59130376_-LTRERVL-MaLRName=THE1C-int
ADediting_259736chr11_59130377_-LTRERVL-MaLRName=THE1C-int
ADediting_259737chr11_59130400_-LTRERVL-MaLRName=THE1C-int
ADediting_259738chr11_59130402_-LTRERVL-MaLRName=THE1C-int
ADediting_259739chr11_59130407_-LTRERVL-MaLRName=THE1C-int
ADediting_259740chr11_59130408_-LTRERVL-MaLRName=THE1C-int
ADediting_259741chr11_59130416_-LTRERVL-MaLRName=THE1C-int
ADediting_259742chr11_59130427_-LTRERVL-MaLRName=THE1C-int
ADediting_259743chr11_59130433_-LTRERVL-MaLRName=THE1C-int
ADediting_259744chr11_59130434_-LTRERVL-MaLRName=THE1C-int
ADediting_259745chr11_59130443_-LTRERVL-MaLRName=THE1C-int
ADediting_259746chr11_59130444_-LTRERVL-MaLRName=THE1C-int
ADediting_259747chr11_59130445_-LTRERVL-MaLRName=THE1C-int
ADediting_259748chr11_59130450_-LTRERVL-MaLRName=THE1C-int
ADediting_259749chr11_59130453_-LTRERVL-MaLRName=THE1C-int
ADediting_259750chr11_59130456_-LTRERVL-MaLRName=THE1C-int
ADediting_259751chr11_59130463_-LTRERVL-MaLRName=THE1C-int
ADediting_259752chr11_59130473_-LTRERVL-MaLRName=THE1C-int
ADediting_259753chr11_59130479_-LTRERVL-MaLRName=THE1C-int
ADediting_259754chr11_59130480_-LTRERVL-MaLRName=THE1C-int
ADediting_259755chr11_59130481_-LTRERVL-MaLRName=THE1C-int
ADediting_259756chr11_59130622_-LTRERVL-MaLRName=THE1B
ADediting_259757chr11_59130629_-LTRERVL-MaLRName=THE1B
ADediting_259758chr11_59130670_-LTRERVL-MaLRName=THE1B
ADediting_259759chr11_59130672_-LTRERVL-MaLRName=THE1B
ADediting_259760chr11_59130701_-LTRERVL-MaLRName=THE1B
ADediting_259761chr11_59130794_-LTRERVL-MaLRName=THE1B
ADediting_259762chr11_59130911_-LTRERVL-MaLRName=THE1B-int
ADediting_259763chr11_59130931_-LTRERVL-MaLRName=THE1B-int
ADediting_259764chr11_59130941_-LTRERVL-MaLRName=THE1B-int
ADediting_259765chr11_59131002_-LTRERVL-MaLRName=THE1B-int
ADediting_259766chr11_59131003_-LTRERVL-MaLRName=THE1B-int
ADediting_259767chr11_59131010_-LTRERVL-MaLRName=THE1B-int
ADediting_259768chr11_59131014_-LTRERVL-MaLRName=THE1B-int
ADediting_259769chr11_59131021_-LTRERVL-MaLRName=THE1B-int
ADediting_259770chr11_59131033_-LTRERVL-MaLRName=THE1B-int
ADediting_259771chr11_59131127_-LTRERVL-MaLRName=THE1B-int
ADediting_259772chr11_59131130_-LTRERVL-MaLRName=THE1B-int
ADediting_259773chr11_59131134_-LTRERVL-MaLRName=THE1B-int
ADediting_259774chr11_59131139_-LTRERVL-MaLRName=THE1B-int
ADediting_259775chr11_59131140_-LTRERVL-MaLRName=THE1B-int
ADediting_259776chr11_59131141_-LTRERVL-MaLRName=THE1B-int
ADediting_259777chr11_59131163_-LTRERVL-MaLRName=THE1B-int
ADediting_259778chr11_59131190_-LTRERVL-MaLRName=THE1B-int
ADediting_259779chr11_59131191_-LTRERVL-MaLRName=THE1B-int
ADediting_259780chr11_59131333_-LTRERVL-MaLRName=THE1B-int
ADediting_259781chr11_59131381_-LTRERVL-MaLRName=THE1B-int
ADediting_259782chr11_59131404_-LTRERVL-MaLRName=THE1B-int
ADediting_259783chr11_59131418_-LTRERVL-MaLRName=THE1B-int
ADediting_259784chr11_59131420_-LTRERVL-MaLRName=THE1B-int
ADediting_259785chr11_59131429_-LTRERVL-MaLRName=THE1B-int
ADediting_259786chr11_59131443_-LTRERVL-MaLRName=THE1B-int
ADediting_259787chr11_59131447_-LTRERVL-MaLRName=THE1B-int
ADediting_259788chr11_59131465_-LTRERVL-MaLRName=THE1B-int
ADediting_259789chr11_59131549_-LTRERVL-MaLRName=THE1B-int
ADediting_259790chr11_59132606_-LTRERVL-MaLRName=THE1B
ADediting_259791chr11_59132623_-LTRERVL-MaLRName=THE1B
ADediting_259792chr11_59132633_-LTRERVL-MaLRName=THE1B
ADediting_259793chr11_59132634_-LTRERVL-MaLRName=THE1B
ADediting_259794chr11_59132652_-LTRERVL-MaLRName=THE1B
ADediting_259795chr11_59132901_-LTRERVL-MaLRName=THE1C-int
ADediting_259796chr11_59133143_-LTRERVL-MaLRName=THE1C-int
ADediting_259797chr11_59133151_-LTRERVL-MaLRName=THE1C-int
ADediting_259798chr11_59133173_-LTRERVL-MaLRName=THE1C-int
ADediting_259799chr11_59133210_-LTRERVL-MaLRName=THE1C
ADediting_259800chr11_59133234_-LTRERVL-MaLRName=THE1C
ADediting_259801chr11_59133248_-LTRERVL-MaLRName=THE1C
ADediting_259802chr11_59133252_-LTRERVL-MaLRName=THE1C
ADediting_1527119chr11_59130325_-LTRERVL-MaLRName=THE1C-int
ADediting_1527120chr11_59130344_-LTRERVL-MaLRName=THE1C-int
ADediting_1527121chr11_59130362_-LTRERVL-MaLRName=THE1C-int
ADediting_1527122chr11_59130462_-LTRERVL-MaLRName=THE1C-int
ADediting_1527123chr11_59130860_-LTRERVL-MaLRName=THE1B
ADediting_1527124chr11_59130929_-LTRERVL-MaLRName=THE1B-int
ADediting_1527125chr11_59130954_-LTRERVL-MaLRName=THE1B-int
ADediting_1527126chr11_59131011_-LTRERVL-MaLRName=THE1B-int
ADediting_1527127chr11_59131034_-LTRERVL-MaLRName=THE1B-int
ADediting_1527128chr11_59131097_-LTRERVL-MaLRName=THE1B-int
ADediting_1527129chr11_59131161_-LTRERVL-MaLRName=THE1B-int
ADediting_1527130chr11_59131164_-LTRERVL-MaLRName=THE1B-int
ADediting_1527131chr11_59131326_-LTRERVL-MaLRName=THE1B-int
ADediting_1527132chr11_59131386_-LTRERVL-MaLRName=THE1B-int
ADediting_1527133chr11_59131405_-LTRERVL-MaLRName=THE1B-int
ADediting_1527134chr11_59132619_-LTRERVL-MaLRName=THE1B
ADediting_1527135chr11_59132670_-LTRERVL-MaLRName=THE1B
ADediting_1527136chr11_59132671_-LTRERVL-MaLRName=THE1B
ADediting_1527137chr11_59132673_-LTRERVL-MaLRName=THE1B
ADediting_1527138chr11_59132689_-LTRERVL-MaLRName=THE1B
ADediting_1527139chr11_59132778_-LTRERVL-MaLRName=THE1B
ADediting_1527140chr11_59132794_-LTRERVL-MaLRName=THE1B
ADediting_1527141chr11_59132795_-LTRERVL-MaLRName=THE1B
ADediting_1527142chr11_59132810_-LTRERVL-MaLRName=THE1B
ADediting_1527143chr11_59132811_-LTRERVL-MaLRName=THE1B
ADediting_1527144chr11_59132817_-LTRERVL-MaLRName=THE1B
ADediting_1527145chr11_59132818_-LTRERVL-MaLRName=THE1B
ADediting_1527146chr11_59132832_-LTRERVL-MaLRName=THE1B
ADediting_1527147chr11_59132835_-LTRERVL-MaLRName=THE1B
ADediting_1527148chr11_59132836_-LTRERVL-MaLRName=THE1B
ADediting_1527149chr11_59132861_-LTRERVL-MaLRName=THE1B
ADediting_1527150chr11_59132890_-LTRERVL-MaLRName=THE1C-int
ADediting_1527151chr11_59132919_-LTRERVL-MaLRName=THE1C-int
ADediting_1527152chr11_59132920_-LTRERVL-MaLRName=THE1C-int
ADediting_1527153chr11_59132924_-LTRERVL-MaLRName=THE1C-int
ADediting_1527154chr11_59132931_-LTRERVL-MaLRName=THE1C-int
ADediting_1527155chr11_59132945_-LTRERVL-MaLRName=THE1C-int
ADediting_1527156chr11_59132991_-LTRERVL-MaLRName=THE1C-int
ADediting_1527157chr11_59133089_-LTRERVL-MaLRName=THE1C-int
ADediting_1527158chr11_59133092_-LTRERVL-MaLRName=THE1C-int
ADediting_1527159chr11_59133115_-LTRERVL-MaLRName=THE1C-int
ADediting_1527160chr11_59133118_-LTRERVL-MaLRName=THE1C-int
ADediting_1527161chr11_59133124_-LTRERVL-MaLRName=THE1C-int
ADediting_1527162chr11_59133144_-LTRERVL-MaLRName=THE1C-int
ADediting_1527163chr11_59133155_-LTRERVL-MaLRName=THE1C-int
ADediting_1527164chr11_59133200_-LTRERVL-MaLRName=THE1C
ADediting_1527165chr11_59133202_-LTRERVL-MaLRName=THE1C
ADediting_1527166chr11_59133204_-LTRERVL-MaLRName=THE1C
ADediting_1527167chr11_59133215_-LTRERVL-MaLRName=THE1C
ADediting_1527168chr11_59133253_-LTRERVL-MaLRName=THE1C
ADediting_1527169chr11_59133255_-LTRERVL-MaLRName=THE1C
ADediting_1527170chr11_59133269_-LTRERVL-MaLRName=THE1C
ADediting_1527171chr11_59133270_-LTRERVL-MaLRName=THE1C
ADediting_1527172chr11_59133314_-LTRERVL-MaLRName=THE1C
ADediting_1527173chr11_59133380_-LTRERVL-MaLRName=THE1C
ADediting_1527174chr11_59133396_-LTRERVL-MaLRName=THE1C
ADediting_1527175chr11_59133397_-LTRERVL-MaLRName=THE1C
ADediting_1527176chr11_59133399_-LTRERVL-MaLRName=THE1C
ADediting_1527177chr11_59133414_-LTRERVL-MaLRName=THE1C
ADediting_1527178chr11_59133424_-LTRERVL-MaLRName=THE1C
ADediting_1527179chr11_59133428_-LTRERVL-MaLRName=THE1C
ADediting_1527180chr11_59133433_-LTRERVL-MaLRName=THE1C
ADediting_1527181chr11_59133444_-LTRERVL-MaLRName=THE1C
ADediting_1527182chr11_59133500_-LTRERVL-MaLRName=THE1C
ADediting_1527183chr11_59133561_-LTRERVL-MaLRName=THE1C

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RNA A-to-I editing events in the alternative splicing sites for FAM111A-DT

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for FAM111A-DT

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
ADeditome IDChrPositoingSkipped exonENSGENSTs

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Protein coding region RNA A-to-I editings for FAM111A-DT

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for FAM111A-DT

check buttonRNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
all structure

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_259715chr11_59130261_-ENSG00000245571.7ENST00000501817.6FAM111A-DT-201hsa-miR-4650-5pchr1159130256591302627mer-m85913025559130273142-14.32
ADediting_259715chr11_59130261_-ENSG00000245571.7ENST00000501817.6FAM111A-DT-201hsa-miR-4679chr1159130261591302677mer-m85913026059130282144-17.84
ADediting_259715chr11_59130261_-ENSG00000245571.7ENST00000501817.6FAM111A-DT-201hsa-miR-6735-3pchr1159130258591302647mer-m85913025759130278146-19.44
ADediting_259715chr11_59130261_-ENSG00000245571.7ENST00000501817.6FAM111A-DT-201hsa-miR-6811-3pchr1159130259591302657mer-m85913025859130278144-13.67

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1391023chr8_140732605_-ENSG00000245571.7ENST00000501817.6FAM111A-DT-201hsa-miR-151a-3pchr1159135216591352227mer-m85913521559135237157-19.98
ADediting_1391023chr8_140732605_-ENSG00000245571.7ENST00000532845.2FAM111A-DT-203hsa-miR-151a-3pchr1159135216591352227mer-m85913521559135237157-19.98
ADediting_1391023chr8_140732605_-ENSG00000245571.7ENST00000658798.1FAM111A-DT-205hsa-miR-151a-3pchr1159135216591352227mer-m85913521559135237157-19.98
ADediting_1535951chr14_100874558_+ENSG00000245571.7ENST00000501817.6FAM111A-DT-201hsa-miR-337-3pchr1159140042591400487mer-m85914004159140064141-13.36
ADediting_1535951chr14_100874558_+ENSG00000245571.7ENST00000531708.1FAM111A-DT-202hsa-miR-337-3pchr1159140042591400487mer-m85914004159140064141-13.36
ADediting_1535951chr14_100874558_+ENSG00000245571.7ENST00000532845.2FAM111A-DT-203hsa-miR-337-3pchr1159140042591400487mer-m85914004159140064141-13.36
ADediting_1535951chr14_100874558_+ENSG00000245571.7ENST00000533220.1FAM111A-DT-204hsa-miR-337-3pchr1159140042591400487mer-m85914004159140064141-13.36
ADediting_1535951chr14_100874558_+ENSG00000245571.7ENST00000658798.1FAM111A-DT-205hsa-miR-337-3pchr1159140042591400487mer-m85914004159140064141-13.36

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_107020chr1_37500952_-ENSG00000245571.7ENST00000533220.1FAM111A-DT-204hsa-miR-5581-3pchr1159139724591397307mer-m85913972359139745143-13.58
ADediting_1097295chr3_85385762_+ENSG00000245571.7ENST00000533220.1FAM111A-DT-204hsa-miR-5688chr1159139795591398017mer-m85913979459139815148-10.6
ADediting_1471003chr9_63819626_+ENSG00000245571.7ENST00000501817.6FAM111A-DT-201hsa-miR-4477bchr1159136233591362397mer-m85913623259136253153-17.12
ADediting_1471003chr9_63819626_+ENSG00000245571.7ENST00000531708.1FAM111A-DT-202hsa-miR-4477bchr1159136233591362397mer-m85913623259136253153-17.12
ADediting_1471003chr9_63819626_+ENSG00000245571.7ENST00000532845.2FAM111A-DT-203hsa-miR-4477bchr1159135608591356147mer-m85913560759135627146-8.52
ADediting_1471003chr9_63819626_+ENSG00000245571.7ENST00000532845.2FAM111A-DT-203hsa-miR-4477bchr1159136233591362397mer-m85913623259136253153-17.12
ADediting_1471003chr9_63819626_+ENSG00000245571.7ENST00000658798.1FAM111A-DT-205hsa-miR-4477bchr1159136233591362397mer-m85913623259136253153-17.12
ADediting_1471004chr9_63819627_+ENSG00000245571.7ENST00000501817.6FAM111A-DT-201hsa-miR-4477bchr1159136233591362397mer-m85913623259136253153-17.12
ADediting_1471004chr9_63819627_+ENSG00000245571.7ENST00000531708.1FAM111A-DT-202hsa-miR-4477bchr1159136233591362397mer-m85913623259136253153-17.12
ADediting_1471004chr9_63819627_+ENSG00000245571.7ENST00000532845.2FAM111A-DT-203hsa-miR-4477bchr1159135608591356147mer-m85913560759135627146-8.52
ADediting_1471004chr9_63819627_+ENSG00000245571.7ENST00000532845.2FAM111A-DT-203hsa-miR-4477bchr1159136233591362397mer-m85913623259136253153-17.12
ADediting_1471004chr9_63819627_+ENSG00000245571.7ENST00000658798.1FAM111A-DT-205hsa-miR-4477bchr1159136233591362397mer-m85913623259136253153-17.12
ADediting_527135chr16_24203190_+ENSG00000245571.7ENST00000501817.6FAM111A-DT-201hsa-miR-1273h-3pchr1159142660591426667mer-m85914265959142681154-24.48
ADediting_527135chr16_24203190_+ENSG00000245571.7ENST00000532845.2FAM111A-DT-203hsa-miR-1273h-3pchr1159142660591426667mer-m85914265959142681154-24.48
ADediting_527135chr16_24203190_+ENSG00000245571.7ENST00000533220.1FAM111A-DT-204hsa-miR-1273h-3pchr1159142660591426667mer-m85914265959142681154-24.48
ADediting_527135chr16_24203190_+ENSG00000245571.7ENST00000658798.1FAM111A-DT-205hsa-miR-1273h-3pchr1159142660591426667mer-m85914265959142681154-24.48
ADediting_98288chr1_32086990_+ENSG00000245571.7ENST00000532845.2FAM111A-DT-203hsa-miR-5585-3pchr1159134184591341907mer-m85913418359134205155-16.94
ADediting_98288chr1_32086990_+ENSG00000245571.7ENST00000658798.1FAM111A-DT-205hsa-miR-5585-3pchr1159134184591341907mer-m85913418359134205155-16.94
ADediting_98289chr1_32086992_+ENSG00000245571.7ENST00000532845.2FAM111A-DT-203hsa-miR-5585-3pchr1159134184591341907mer-m85913418359134205155-16.94
ADediting_98289chr1_32086992_+ENSG00000245571.7ENST00000658798.1FAM111A-DT-205hsa-miR-5585-3pchr1159134184591341907mer-m85913418359134205155-16.94

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for FAM111A-DT

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000501817.6lncRNASoverviewSoverview

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
ADediting_259715ENST00000501817.6chr11_59130261_-1982-622.20-621.30-622.20

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Relation with ADAR for FAM111A-DT

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFCADediting_259741chr11_59130416_-0.2336172478184310.06784561799638560.3466242475874290.05363232336701481.36115864939633e-080.315500877884589

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFC1.76192340058516e-230.5262447368346833.50692863847707e-140.4127341312877951.85647247621733e-080.312688048247752
AC1.54025615033403e-480.7611512194634526.01359253189029e-260.6010824267438465.22288837950258e-200.536167857399993
PCC2.83185041420145e-130.4963570687210883.21297223077561e-090.4119130909825022.62748439374424e-070.362175963932937
CER1.87063390916075e-170.6223637121090532.82491270208112e-060.3716970095505131.91139140036566e-050.341364165584001
TCX3.56756462505917e-100.4838080746772540.4975359381616160.0558125329759321.26560538815868e-070.415249352181939
FP5.55051873222496e-110.4660188272556051.63187618716267e-100.4557543365947762.913962684731e-080.40097691640065
PG3.54875131768359e-210.6204712836497793.62396055664835e-110.4608275587109150.02960201980209570.15955855418031
STG0.03642244112369810.2286679052257740.4220729146272270.08875275517431970.0003241448538789870.382941433313773

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Relation with AD stages for FAM111A-DT

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.
TCX4.41432113656921e-060.429211248610097

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RelatedDrugs for FAM111A-DT

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for FAM111A-DT

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource