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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited versus non-edited samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with AD stages

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene


Gene summary for BLOC1S5-TXNDC5

check button Gene summary
Gene informationGene symbol

BLOC1S5-TXNDC5

Gene ID

100526836

Gene nameBLOC1S5-TXNDC5 readthrough (NMD candidate)
SynonymsMUTED-TXNDC5
Cytomap

6p24.3

Type of genencRNA
DescriptionBLOC1S5-TXNDC5 readthrough (non-protein coding)MUTED-TXNDC5 readthrough (non-protein coding)
Modification date20200313
UniProtAcc

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for BLOC1S5-TXNDC5

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_1277345(7936584, -), ADediting_1277419(7977517, -), ADediting_1277420(7982354, -), ADediting_1277421(7982994, -), ADediting_1277422(7983038, -), ADediting_1277423(7983081, -), ADediting_1277424(7983082, -), ADediting_1277425(7984015, -), ADediting_1277426(7984046, -), ADediting_1277427(7984084, -), ADediting_1277428(7984155, -), ADediting_1277429(7984213, -), ADediting_1277430(7990886, -), ADediting_1277431(7990931, -), ADediting_1277432(7990932, -), ADediting_1277438(7993286, -), ADediting_1277440(8005755, -), ADediting_1277441(8007353, -), ADediting_1277442(8007391, -), ADediting_1277443(8007418, -), ADediting_1277444(8007444, -), ADediting_1277445(8007451, -), ADediting_1277446(8007461, -), ADediting_1277447(8008306, -), ADediting_1277448(8008341, -), ADediting_1277449(8008345, -), ADediting_1277450(8008354, -), ADediting_1277451(8008368, -), ADediting_1277452(8008457, -), ADediting_1277453(8008460, -), ADediting_1277454(8008466, -), ADediting_1277455(8008474, -), ADediting_1277456(8008475, -), ADediting_1277457(8008483, -), ADediting_1277458(8008498, -), ADediting_1277459(8008501, -), ADediting_1277460(8008511, -), ADediting_1277461(8008515, -), ADediting_1277462(8008523, -), ADediting_1277463(8008540, -), ADediting_1277464(8008541, -), ADediting_1277465(8008576, -), ADediting_1277466(8008584, -), ADediting_1277467(8011935, -), ADediting_1277468(8011981, -), ADediting_1277469(8012008, -), ADediting_1277470(8012040, -), ADediting_1277471(8012041, -), ADediting_1277472(8012043, -), ADediting_1277473(8012047, -), ADediting_1277474(8012048, -), ADediting_1277475(8012049, -), ADediting_1277476(8012052, -), ADediting_1277477(8012140, -), ADediting_1277478(8012949, -), ADediting_1277479(8012952, -), ADediting_1277480(8012958, -), ADediting_1277481(8012970, -), ADediting_1277482(8012971, -), ADediting_1277483(8012980, -), ADediting_1277484(8012985, -), ADediting_1277485(8012993, -), ADediting_1277486(8012997, -), ADediting_1277487(8012998, -), ADediting_1277488(8013044, -), ADediting_1277489(8013049, -), ADediting_1277490(8013052, -), ADediting_1277491(8013060, -), ADediting_1277492(8013080, -), ADediting_1277493(8013115, -), ADediting_1277494(8013129, -), ADediting_1277495(8013132, -), ADediting_1277496(8013133, -), ADediting_1277497(8013152, -), ADediting_1277498(8013158, -), ADediting_1277499(8013201, -), ADediting_1277501(8014296, -), ADediting_1277502(8014334, -), ADediting_1277503(8014339, -), ADediting_1277504(8014346, -), ADediting_1277505(8014376, -), ADediting_1277506(8014379, -), ADediting_1277507(8014380, -), ADediting_1277508(8014389, -), ADediting_1277509(8014395, -), ADediting_1277510(8014398, -), ADediting_1277511(8014402, -), ADediting_1277512(8014411, -), ADediting_1277513(8014412, -), ADediting_1277514(8014438, -), ADediting_1277515(8014441, -), ADediting_1277516(8014442, -), ADediting_1277517(8014443, -), ADediting_1277518(8014444, -), ADediting_1277519(8014445, -), ADediting_1277520(8014447, -), ADediting_1277521(8014452, -), ADediting_1277522(8014453, -), ADediting_1277523(8014456, -), ADediting_1277524(8014467, -), ADediting_1277525(8014477, -), ADediting_1277526(8014492, -), ADediting_1277527(8014493, -), ADediting_1277528(8014501, -), ADediting_1277529(8014505, -), ADediting_1277530(8014506, -), ADediting_1277531(8014520, -), ADediting_1277532(8014524, -), ADediting_1277533(8014540, -), ADediting_1277534(8014546, -), ADediting_1277535(8014547, -), ADediting_1277536(8014553, -), ADediting_1277537(8017356, -), ADediting_1277538(8019337, -), ADediting_1277539(8019448, -), ADediting_1277540(8019487, -), ADediting_1277541(8019488, -), ADediting_1277544(8023407, -), ADediting_1277545(8023452, -), ADediting_1277546(8023468, -), ADediting_1277547(8023478, -), ADediting_1277548(8023507, -), ADediting_1277549(8024281, -), ADediting_1277616(8049939, -), ADediting_1277617(8052703, -), ADediting_1277618(8052767, -), ADediting_1277619(8052773, -), ADediting_1584546(8008308, -), ADediting_1584547(8008314, -), ADediting_1584548(8008326, -), ADediting_1584549(8013010, -), ADediting_1584550(8013023, -), ADediting_1584551(8013066, -), ADediting_1584552(8013067, -), ADediting_1584553(8013087, -), ADediting_1584554(8014366, -), ADediting_1584555(8014530, -), ADediting_1662638(8008499, -), ADediting_1662639(8012097, -), ADediting_1662640(8013093, -), ADediting_1662641(8013103, -), ADediting_1662642(8013151, -), ADediting_1662643(8014371, -), ADediting_1662644(8014406, -),

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RNA editing positional annotations for BLOC1S5-TXNDC5 using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_1277345chr6_7936584_-intronic
ADediting_1277419chr6_7977517_-intronic
ADediting_1277420chr6_7982354_-intronic
ADediting_1277421chr6_7982994_-intronic
ADediting_1277422chr6_7983038_-intronic
ADediting_1277423chr6_7983081_-intronic
ADediting_1277424chr6_7983082_-intronic
ADediting_1277425chr6_7984015_-intronic
ADediting_1277426chr6_7984046_-intronic
ADediting_1277427chr6_7984084_-intronic
ADediting_1277428chr6_7984155_-intronic
ADediting_1277429chr6_7984213_-intronic
ADediting_1277430chr6_7990886_-intronic
ADediting_1277431chr6_7990931_-intronic
ADediting_1277432chr6_7990932_-intronic
ADediting_1277438chr6_7993286_-intronic
ADediting_1277440chr6_8005755_-intronic
ADediting_1277441chr6_8007353_-intronic
ADediting_1277442chr6_8007391_-intronic
ADediting_1277443chr6_8007418_-intronic
ADediting_1277444chr6_8007444_-intronic
ADediting_1277445chr6_8007451_-intronic
ADediting_1277446chr6_8007461_-intronic
ADediting_1277447chr6_8008306_-intronic
ADediting_1277448chr6_8008341_-intronic
ADediting_1277449chr6_8008345_-intronic
ADediting_1277450chr6_8008354_-intronic
ADediting_1277451chr6_8008368_-intronic
ADediting_1277452chr6_8008457_-intronic
ADediting_1277453chr6_8008460_-intronic
ADediting_1277454chr6_8008466_-intronic
ADediting_1277455chr6_8008474_-intronic
ADediting_1277456chr6_8008475_-intronic
ADediting_1277457chr6_8008483_-intronic
ADediting_1277458chr6_8008498_-intronic
ADediting_1277459chr6_8008501_-intronic
ADediting_1277460chr6_8008511_-intronic
ADediting_1277461chr6_8008515_-intronic
ADediting_1277462chr6_8008523_-intronic
ADediting_1277463chr6_8008540_-intronic
ADediting_1277464chr6_8008541_-intronic
ADediting_1277465chr6_8008576_-intronic
ADediting_1277466chr6_8008584_-intronic
ADediting_1277467chr6_8011935_-intronic
ADediting_1277468chr6_8011981_-intronic
ADediting_1277469chr6_8012008_-intronic
ADediting_1277470chr6_8012040_-intronic
ADediting_1277471chr6_8012041_-intronic
ADediting_1277472chr6_8012043_-intronic
ADediting_1277473chr6_8012047_-intronic
ADediting_1277474chr6_8012048_-intronic
ADediting_1277475chr6_8012049_-intronic
ADediting_1277476chr6_8012052_-intronic
ADediting_1277477chr6_8012140_-intronic
ADediting_1277478chr6_8012949_-intronic
ADediting_1277479chr6_8012952_-intronic
ADediting_1277480chr6_8012958_-intronic
ADediting_1277481chr6_8012970_-intronic
ADediting_1277482chr6_8012971_-intronic
ADediting_1277483chr6_8012980_-intronic
ADediting_1277484chr6_8012985_-intronic
ADediting_1277485chr6_8012993_-intronic
ADediting_1277486chr6_8012997_-intronic
ADediting_1277487chr6_8012998_-intronic
ADediting_1277488chr6_8013044_-intronic
ADediting_1277489chr6_8013049_-intronic
ADediting_1277490chr6_8013052_-intronic
ADediting_1277491chr6_8013060_-intronic
ADediting_1277492chr6_8013080_-intronic
ADediting_1277493chr6_8013115_-intronic
ADediting_1277494chr6_8013129_-intronic
ADediting_1277495chr6_8013132_-intronic
ADediting_1277496chr6_8013133_-intronic
ADediting_1277497chr6_8013152_-intronic
ADediting_1277498chr6_8013158_-intronic
ADediting_1277499chr6_8013201_-intronic
ADediting_1277501chr6_8014296_-UTR3
ADediting_1277502chr6_8014334_-UTR3
ADediting_1277503chr6_8014339_-UTR3
ADediting_1277504chr6_8014346_-UTR3
ADediting_1277505chr6_8014376_-UTR3
ADediting_1277506chr6_8014379_-UTR3
ADediting_1277507chr6_8014380_-UTR3
ADediting_1277508chr6_8014389_-UTR3
ADediting_1277509chr6_8014395_-UTR3
ADediting_1277510chr6_8014398_-UTR3
ADediting_1277511chr6_8014402_-UTR3
ADediting_1277512chr6_8014411_-UTR3
ADediting_1277513chr6_8014412_-UTR3
ADediting_1277514chr6_8014438_-UTR3
ADediting_1277515chr6_8014441_-UTR3
ADediting_1277516chr6_8014442_-UTR3
ADediting_1277517chr6_8014443_-UTR3
ADediting_1277518chr6_8014444_-UTR3
ADediting_1277519chr6_8014445_-UTR3
ADediting_1277520chr6_8014447_-UTR3
ADediting_1277521chr6_8014452_-UTR3
ADediting_1277522chr6_8014453_-UTR3
ADediting_1277523chr6_8014456_-UTR3
ADediting_1277524chr6_8014467_-UTR3
ADediting_1277525chr6_8014477_-UTR3
ADediting_1277526chr6_8014492_-UTR3
ADediting_1277527chr6_8014493_-UTR3
ADediting_1277528chr6_8014501_-UTR3
ADediting_1277529chr6_8014505_-UTR3
ADediting_1277530chr6_8014506_-UTR3
ADediting_1277531chr6_8014520_-UTR3
ADediting_1277532chr6_8014524_-UTR3
ADediting_1277533chr6_8014540_-UTR3
ADediting_1277534chr6_8014546_-UTR3
ADediting_1277535chr6_8014547_-UTR3
ADediting_1277536chr6_8014553_-UTR3
ADediting_1277537chr6_8017356_-intronic
ADediting_1277538chr6_8019337_-intronic
ADediting_1277539chr6_8019448_-intronic
ADediting_1277540chr6_8019487_-intronic
ADediting_1277541chr6_8019488_-intronic
ADediting_1277544chr6_8023407_-intronic
ADediting_1277545chr6_8023452_-intronic
ADediting_1277546chr6_8023468_-intronic
ADediting_1277547chr6_8023478_-intronic
ADediting_1277548chr6_8023507_-intronic
ADediting_1277549chr6_8024281_-intronic
ADediting_1277616chr6_8049939_-intronic
ADediting_1277617chr6_8052703_-intronic
ADediting_1277618chr6_8052767_-intronic
ADediting_1277619chr6_8052773_-intronic
ADediting_1584546chr6_8008308_-intronic
ADediting_1584547chr6_8008314_-intronic
ADediting_1584548chr6_8008326_-intronic
ADediting_1584549chr6_8013010_-intronic
ADediting_1584550chr6_8013023_-intronic
ADediting_1584551chr6_8013066_-intronic
ADediting_1584552chr6_8013067_-intronic
ADediting_1584553chr6_8013087_-intronic
ADediting_1584554chr6_8014366_-UTR3
ADediting_1584555chr6_8014530_-UTR3
ADediting_1662638chr6_8008499_-intronic
ADediting_1662639chr6_8012097_-intronic
ADediting_1662640chr6_8013093_-intronic
ADediting_1662641chr6_8013103_-intronic
ADediting_1662642chr6_8013151_-intronic
ADediting_1662643chr6_8014371_-UTR3
ADediting_1662644chr6_8014406_-UTR3

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_1277345chr6_7936584_-SINEAluName=AluSq2
ADediting_1277419chr6_7977517_-SINEAluName=AluSx
ADediting_1277420chr6_7982354_-SINEAluName=AluSp
ADediting_1277421chr6_7982994_-SINEAluName=AluSx1
ADediting_1277422chr6_7983038_-SINEAluName=AluSx1
ADediting_1277423chr6_7983081_-SINEAluName=AluSx1
ADediting_1277424chr6_7983082_-SINEAluName=AluSx1
ADediting_1277425chr6_7984015_-SINEAluName=AluSx1
ADediting_1277426chr6_7984046_-SINEAluName=AluSx1
ADediting_1277427chr6_7984084_-SINEAluName=AluSx1
ADediting_1277428chr6_7984155_-SINEAluName=AluSx1
ADediting_1277429chr6_7984213_-SINEAluName=AluSx1
ADediting_1277430chr6_7990886_-SINEAluName=AluSq2
ADediting_1277431chr6_7990931_-SINEAluName=AluSq2
ADediting_1277432chr6_7990932_-SINEAluName=AluSq2
ADediting_1277438chr6_7993286_-SINEAluName=AluY
ADediting_1277440chr6_8005755_-SINEAluName=AluSz
ADediting_1277441chr6_8007353_-SINEAluName=FLAM_C
ADediting_1277442chr6_8007391_-SINEAluName=FLAM_C
ADediting_1277443chr6_8007418_-SINEAluName=FLAM_C
ADediting_1277444chr6_8007444_-SINEAluName=FLAM_C
ADediting_1277445chr6_8007451_-SINEAluName=FLAM_C
ADediting_1277446chr6_8007461_-SINEAluName=FLAM_C
ADediting_1277447chr6_8008306_-SINEAluName=AluSq2
ADediting_1277448chr6_8008341_-SINEAluName=AluSq2
ADediting_1277449chr6_8008345_-SINEAluName=AluSq2
ADediting_1277450chr6_8008354_-SINEAluName=AluSq2
ADediting_1277451chr6_8008368_-SINEAluName=AluSq2
ADediting_1277452chr6_8008457_-SINEAluName=AluSq2
ADediting_1277453chr6_8008460_-SINEAluName=AluSq2
ADediting_1277454chr6_8008466_-SINEAluName=AluSq2
ADediting_1277455chr6_8008474_-SINEAluName=AluSq2
ADediting_1277456chr6_8008475_-SINEAluName=AluSq2
ADediting_1277457chr6_8008483_-SINEAluName=AluSq2
ADediting_1277458chr6_8008498_-SINEAluName=AluSq2
ADediting_1277459chr6_8008501_-SINEAluName=AluSq2
ADediting_1277460chr6_8008511_-SINEAluName=AluSq2
ADediting_1277461chr6_8008515_-SINEAluName=AluSq2
ADediting_1277462chr6_8008523_-SINEAluName=AluSq2
ADediting_1277463chr6_8008540_-SINEAluName=AluSq2
ADediting_1277464chr6_8008541_-SINEAluName=AluSq2
ADediting_1277465chr6_8008576_-SINEAluName=AluSq2
ADediting_1277466chr6_8008584_-SINEAluName=AluSq2
ADediting_1277467chr6_8011935_-SINEAluName=AluSc
ADediting_1277468chr6_8011981_-SINEAluName=AluSc
ADediting_1277469chr6_8012008_-SINEAluName=AluSc
ADediting_1277470chr6_8012040_-SINEAluName=AluSc
ADediting_1277471chr6_8012041_-SINEAluName=AluSc
ADediting_1277472chr6_8012043_-SINEAluName=AluSc
ADediting_1277473chr6_8012047_-SINEAluName=AluSc
ADediting_1277474chr6_8012048_-SINEAluName=AluSc
ADediting_1277475chr6_8012049_-SINEAluName=AluSc
ADediting_1277476chr6_8012052_-SINEAluName=AluSc
ADediting_1277477chr6_8012140_-SINEAluName=AluSc
ADediting_1277478chr6_8012949_-SINEAluName=AluSz
ADediting_1277479chr6_8012952_-SINEAluName=AluSz
ADediting_1277480chr6_8012958_-SINEAluName=AluSz
ADediting_1277481chr6_8012970_-SINEAluName=AluSz
ADediting_1277482chr6_8012971_-SINEAluName=AluSz
ADediting_1277483chr6_8012980_-SINEAluName=AluSz
ADediting_1277484chr6_8012985_-SINEAluName=AluSz
ADediting_1277485chr6_8012993_-SINEAluName=AluSz
ADediting_1277486chr6_8012997_-SINEAluName=AluSz
ADediting_1277487chr6_8012998_-SINEAluName=AluSz
ADediting_1277488chr6_8013044_-SINEAluName=AluSz
ADediting_1277489chr6_8013049_-SINEAluName=AluSz
ADediting_1277490chr6_8013052_-SINEAluName=AluSz
ADediting_1277491chr6_8013060_-SINEAluName=AluSz
ADediting_1277492chr6_8013080_-SINEAluName=AluSz
ADediting_1277493chr6_8013115_-SINEAluName=AluSz
ADediting_1277494chr6_8013129_-SINEAluName=AluSz
ADediting_1277495chr6_8013132_-SINEAluName=AluSz
ADediting_1277496chr6_8013133_-SINEAluName=AluSz
ADediting_1277497chr6_8013152_-SINEAluName=AluSz
ADediting_1277498chr6_8013158_-SINEAluName=AluSz
ADediting_1277499chr6_8013201_-SINEAluName=AluSz
ADediting_1277501chr6_8014296_-SINEAluName=AluSz
ADediting_1277502chr6_8014334_-SINEAluName=AluSz
ADediting_1277503chr6_8014339_-SINEAluName=AluSz
ADediting_1277504chr6_8014346_-SINEAluName=AluSz
ADediting_1277505chr6_8014376_-SINEAluName=AluSz
ADediting_1277506chr6_8014379_-SINEAluName=AluSz
ADediting_1277507chr6_8014380_-SINEAluName=AluSz
ADediting_1277508chr6_8014389_-SINEAluName=AluSz
ADediting_1277509chr6_8014395_-SINEAluName=AluSz
ADediting_1277510chr6_8014398_-SINEAluName=AluSz
ADediting_1277511chr6_8014402_-SINEAluName=AluSz
ADediting_1277512chr6_8014411_-SINEAluName=AluSz
ADediting_1277513chr6_8014412_-SINEAluName=AluSz
ADediting_1277514chr6_8014438_-SINEAluName=AluSz
ADediting_1277515chr6_8014441_-SINEAluName=AluSz
ADediting_1277516chr6_8014442_-SINEAluName=AluSz
ADediting_1277517chr6_8014443_-SINEAluName=AluSz
ADediting_1277518chr6_8014444_-SINEAluName=AluSz
ADediting_1277519chr6_8014445_-SINEAluName=AluSz
ADediting_1277520chr6_8014447_-SINEAluName=AluSz
ADediting_1277521chr6_8014452_-SINEAluName=AluSz
ADediting_1277522chr6_8014453_-SINEAluName=AluSz
ADediting_1277523chr6_8014456_-SINEAluName=AluSz
ADediting_1277524chr6_8014467_-SINEAluName=AluSz
ADediting_1277525chr6_8014477_-SINEAluName=AluSz
ADediting_1277526chr6_8014492_-SINEAluName=AluSz
ADediting_1277527chr6_8014493_-SINEAluName=AluSz
ADediting_1277528chr6_8014501_-SINEAluName=AluSz
ADediting_1277529chr6_8014505_-SINEAluName=AluSz
ADediting_1277530chr6_8014506_-SINEAluName=AluSz
ADediting_1277531chr6_8014520_-SINEAluName=AluSz
ADediting_1277532chr6_8014524_-SINEAluName=AluSz
ADediting_1277533chr6_8014540_-SINEAluName=AluSz
ADediting_1277534chr6_8014546_-SINEAluName=AluSz
ADediting_1277535chr6_8014547_-SINEAluName=AluSz
ADediting_1277536chr6_8014553_-SINEAluName=AluSz
ADediting_1277537chr6_8017356_-SINEAluName=AluSg7
ADediting_1277538chr6_8019337_-SINEAluName=AluSq2
ADediting_1277539chr6_8019448_-SINEAluName=AluSq2
ADediting_1277540chr6_8019487_-SINEAluName=AluSq2
ADediting_1277541chr6_8019488_-SINEAluName=AluSq2
ADediting_1277544chr6_8023407_-SINEAluName=AluSx
ADediting_1277545chr6_8023452_-SINEAluName=AluSx
ADediting_1277546chr6_8023468_-SINEAluName=AluSx
ADediting_1277547chr6_8023478_-SINEAluName=AluSx
ADediting_1277548chr6_8023507_-SINEAluName=AluSx
ADediting_1277549chr6_8024281_-SINEAluName=AluSx1
ADediting_1277616chr6_8049939_-SINEAluName=AluJb
ADediting_1277617chr6_8052703_-SINEAluName=AluY
ADediting_1277618chr6_8052767_-SINEAluName=AluY
ADediting_1277619chr6_8052773_-SINEAluName=AluY
ADediting_1584546chr6_8008308_-SINEAluName=AluSq2
ADediting_1584547chr6_8008314_-SINEAluName=AluSq2
ADediting_1584548chr6_8008326_-SINEAluName=AluSq2
ADediting_1584549chr6_8013010_-SINEAluName=AluSz
ADediting_1584550chr6_8013023_-SINEAluName=AluSz
ADediting_1584551chr6_8013066_-SINEAluName=AluSz
ADediting_1584552chr6_8013067_-SINEAluName=AluSz
ADediting_1584553chr6_8013087_-SINEAluName=AluSz
ADediting_1584554chr6_8014366_-SINEAluName=AluSz
ADediting_1584555chr6_8014530_-SINEAluName=AluSz
ADediting_1662638chr6_8008499_-SINEAluName=AluSq2
ADediting_1662639chr6_8012097_-SINEAluName=AluSc
ADediting_1662640chr6_8013093_-SINEAluName=AluSz
ADediting_1662641chr6_8013103_-SINEAluName=AluSz
ADediting_1662642chr6_8013151_-SINEAluName=AluSz
ADediting_1662643chr6_8014371_-SINEAluName=AluSz
ADediting_1662644chr6_8014406_-SINEAluName=AluSz

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RNA A-to-I editing events in the alternative splicing sites for BLOC1S5-TXNDC5

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for BLOC1S5-TXNDC5

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
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check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
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ADeditome IDChrPositoingSkipped exonENSGENSTs

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Protein coding region RNA A-to-I editings for BLOC1S5-TXNDC5

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for BLOC1S5-TXNDC5


check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for BLOC1S5-TXNDC5

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for BLOC1S5-TXNDC5

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
TCXADediting_1277483chr6_8012980_-0.005550900063665060.22539461058840.643236086597768-0.03812357254896428.70600077045117e-060.354219185864911
CERADediting_1277529chr6_8014505_-8.16494609430573e-050.316020098713911.3082024376328e-060.3830893479207950.285760316667660.0877241414836151
DLPFCADediting_1277547chr6_8023478_-0.148822868988952-0.08218999403772310.00266818210013694-0.1700351802467522.44790598701319e-100.349541033156897

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
PG3.36685861432216e-140.518671363662252.70697877777214e-070.3663631857813720.6792823774366730.0305137225961924

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Relation with AD stages for BLOC1S5-TXNDC5

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.
TCXADediting_1277483chr6_8012980_-5.25965661026806e-060.426113905057835

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.
IFG0.0335758254622179-0.426328806462416

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RelatedDrugs for BLOC1S5-TXNDC5

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for BLOC1S5-TXNDC5

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource