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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited versus non-edited samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with AD stages

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene


Gene summary for RBFADN

check button Gene summary
Gene informationGene symbol

RBFADN

Gene ID

100506070

Gene nameRBFA downstream neighbor
Synonyms-
Cytomap

18q23

Type of genencRNA
DescriptionRBFA downstream neighbor (non-protein coding)
Modification date20200313
UniProtAcc

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for RBFADN

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_699275(80052385, +), ADediting_699276(80052493, +), ADediting_699277(80052561, +), ADediting_699278(80053112, +), ADediting_699279(80053117, +), ADediting_699280(80054435, +), ADediting_699281(80054463, +), ADediting_699282(80054465, +), ADediting_699283(80054466, +), ADediting_699284(80054486, +), ADediting_699285(80054490, +), ADediting_699286(80054505, +), ADediting_699287(80054508, +), ADediting_699288(80054509, +), ADediting_699289(80054517, +), ADediting_699290(80054534, +), ADediting_699291(80054547, +), ADediting_699292(80054548, +), ADediting_699293(80054559, +), ADediting_699294(80054580, +), ADediting_699295(80054586, +), ADediting_699296(80054589, +), ADediting_699297(80054598, +), ADediting_699298(80054604, +), ADediting_699299(80054610, +), ADediting_699300(80054624, +), ADediting_699301(80054625, +), ADediting_699302(80054632, +), ADediting_699303(80054640, +), ADediting_699304(80054650, +), ADediting_699305(80054651, +), ADediting_699306(80054721, +), ADediting_699307(80061578, +), ADediting_699308(80061579, +), ADediting_699309(80061590, +), ADediting_699310(80062409, +), ADediting_699311(80062472, +), ADediting_699312(80070264, +), ADediting_699313(80070272, +), ADediting_699314(80070370, +), ADediting_699315(80070396, +), ADediting_699316(80070397, +), ADediting_699317(80070402, +), ADediting_699318(80070423, +), ADediting_699319(80074234, +), ADediting_699320(80077366, +), ADediting_699321(80077368, +), ADediting_699322(80077395, +), ADediting_699323(80077415, +), ADediting_699324(80077417, +), ADediting_699325(80082968, +), ADediting_699326(80082996, +), ADediting_699327(80082997, +), ADediting_699328(80083007, +), ADediting_699329(80083069, +), ADediting_699330(80083096, +), ADediting_699331(80083111, +), ADediting_699332(80083140, +), ADediting_699333(80083746, +), ADediting_699334(80083747, +), ADediting_699335(80083897, +), ADediting_699336(80084660, +), ADediting_699337(80084692, +), ADediting_699338(80084842, +), ADediting_699339(80084866, +), ADediting_699340(80089260, +), ADediting_699341(80090776, +), ADediting_699342(80090859, +), ADediting_699343(80092552, +), ADediting_699344(80092555, +), ADediting_699345(80093574, +), ADediting_1551244(80050824, +), ADediting_1551245(80050837, +), ADediting_1551246(80050929, +), ADediting_1551247(80054403, +), ADediting_1551248(80054416, +), ADediting_1551249(80054436, +), ADediting_1551250(80054447, +), ADediting_1551251(80054448, +), ADediting_1551252(80054453, +), ADediting_1551253(80054458, +), ADediting_1551254(80054460, +), ADediting_1551255(80054469, +), ADediting_1551256(80054471, +), ADediting_1551257(80054507, +), ADediting_1551258(80054561, +), ADediting_1551259(80054592, +), ADediting_1551260(80054603, +), ADediting_1551261(80054605, +), ADediting_1551262(80054634, +), ADediting_1551263(80054637, +), ADediting_1551264(80054744, +), ADediting_1551265(80055305, +), ADediting_1551266(80055381, +), ADediting_1551267(80061509, +), ADediting_1551268(80061510, +), ADediting_1551269(80061526, +), ADediting_1551270(80061554, +), ADediting_1551271(80061566, +), ADediting_1551272(80061586, +), ADediting_1551273(80061587, +), ADediting_1551274(80061615, +), ADediting_1551275(80061616, +), ADediting_1551276(80061634, +), ADediting_1551277(80061636, +), ADediting_1551278(80061645, +), ADediting_1551279(80062527, +), ADediting_1551280(80062539, +), ADediting_1551281(80070255, +), ADediting_1551282(80070321, +), ADediting_1551283(80070406, +), ADediting_1551284(80070467, +), ADediting_1551285(80070496, +), ADediting_1551286(80074172, +), ADediting_1551287(80074189, +), ADediting_1551288(80074196, +), ADediting_1551289(80074309, +), ADediting_1551290(80074370, +), ADediting_1551291(80074397, +), ADediting_1551292(80089617, +), ADediting_1551293(80089677, +), ADediting_1551294(80089702, +), ADediting_1551295(80089735, +),

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RNA editing positional annotations for RBFADN using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_699275chr18_80052385_+ncRNA_intronic
ADediting_699276chr18_80052493_+ncRNA_intronic
ADediting_699277chr18_80052561_+ncRNA_intronic
ADediting_699278chr18_80053112_+ncRNA_intronic
ADediting_699279chr18_80053117_+ncRNA_intronic
ADediting_699280chr18_80054435_+ncRNA_intronic
ADediting_699281chr18_80054463_+ncRNA_intronic
ADediting_699282chr18_80054465_+ncRNA_intronic
ADediting_699283chr18_80054466_+ncRNA_intronic
ADediting_699284chr18_80054486_+ncRNA_intronic
ADediting_699285chr18_80054490_+ncRNA_intronic
ADediting_699286chr18_80054505_+ncRNA_intronic
ADediting_699287chr18_80054508_+ncRNA_intronic
ADediting_699288chr18_80054509_+ncRNA_intronic
ADediting_699289chr18_80054517_+ncRNA_intronic
ADediting_699290chr18_80054534_+ncRNA_intronic
ADediting_699291chr18_80054547_+ncRNA_intronic
ADediting_699292chr18_80054548_+ncRNA_intronic
ADediting_699293chr18_80054559_+ncRNA_intronic
ADediting_699294chr18_80054580_+ncRNA_intronic
ADediting_699295chr18_80054586_+ncRNA_intronic
ADediting_699296chr18_80054589_+ncRNA_intronic
ADediting_699297chr18_80054598_+ncRNA_intronic
ADediting_699298chr18_80054604_+ncRNA_intronic
ADediting_699299chr18_80054610_+ncRNA_intronic
ADediting_699300chr18_80054624_+ncRNA_intronic
ADediting_699301chr18_80054625_+ncRNA_intronic
ADediting_699302chr18_80054632_+ncRNA_intronic
ADediting_699303chr18_80054640_+ncRNA_intronic
ADediting_699304chr18_80054650_+ncRNA_intronic
ADediting_699305chr18_80054651_+ncRNA_intronic
ADediting_699306chr18_80054721_+ncRNA_intronic
ADediting_699307chr18_80061578_+ncRNA_intronic
ADediting_699308chr18_80061579_+ncRNA_intronic
ADediting_699309chr18_80061590_+ncRNA_intronic
ADediting_699310chr18_80062409_+ncRNA_intronic
ADediting_699311chr18_80062472_+ncRNA_intronic
ADediting_699312chr18_80070264_+ncRNA_exonic
ADediting_699313chr18_80070272_+ncRNA_exonic
ADediting_699314chr18_80070370_+ncRNA_exonic
ADediting_699315chr18_80070396_+ncRNA_exonic
ADediting_699316chr18_80070397_+ncRNA_exonic
ADediting_699317chr18_80070402_+ncRNA_exonic
ADediting_699318chr18_80070423_+ncRNA_exonic
ADediting_699319chr18_80074234_+ncRNA_intronic
ADediting_699320chr18_80077366_+ncRNA_intronic
ADediting_699321chr18_80077368_+ncRNA_intronic
ADediting_699322chr18_80077395_+ncRNA_intronic
ADediting_699323chr18_80077415_+ncRNA_intronic
ADediting_699324chr18_80077417_+ncRNA_intronic
ADediting_699325chr18_80082968_+ncRNA_intronic
ADediting_699326chr18_80082996_+ncRNA_intronic
ADediting_699327chr18_80082997_+ncRNA_intronic
ADediting_699328chr18_80083007_+ncRNA_intronic
ADediting_699329chr18_80083069_+ncRNA_intronic
ADediting_699330chr18_80083096_+ncRNA_intronic
ADediting_699331chr18_80083111_+ncRNA_intronic
ADediting_699332chr18_80083140_+ncRNA_intronic
ADediting_699333chr18_80083746_+ncRNA_intronic
ADediting_699334chr18_80083747_+ncRNA_intronic
ADediting_699335chr18_80083897_+ncRNA_intronic
ADediting_699336chr18_80084660_+ncRNA_intronic
ADediting_699337chr18_80084692_+ncRNA_intronic
ADediting_699338chr18_80084842_+ncRNA_intronic
ADediting_699339chr18_80084866_+ncRNA_intronic
ADediting_699340chr18_80089260_+ncRNA_intronic
ADediting_699341chr18_80090776_+ncRNA_intronic
ADediting_699342chr18_80090859_+ncRNA_intronic
ADediting_699343chr18_80092552_+ncRNA_intronic
ADediting_699344chr18_80092555_+ncRNA_intronic
ADediting_699345chr18_80093574_+ncRNA_intronic
ADediting_1551244chr18_80050824_+ncRNA_intronic
ADediting_1551245chr18_80050837_+ncRNA_intronic
ADediting_1551246chr18_80050929_+ncRNA_intronic
ADediting_1551247chr18_80054403_+ncRNA_intronic
ADediting_1551248chr18_80054416_+ncRNA_intronic
ADediting_1551249chr18_80054436_+ncRNA_intronic
ADediting_1551250chr18_80054447_+ncRNA_intronic
ADediting_1551251chr18_80054448_+ncRNA_intronic
ADediting_1551252chr18_80054453_+ncRNA_intronic
ADediting_1551253chr18_80054458_+ncRNA_intronic
ADediting_1551254chr18_80054460_+ncRNA_intronic
ADediting_1551255chr18_80054469_+ncRNA_intronic
ADediting_1551256chr18_80054471_+ncRNA_intronic
ADediting_1551257chr18_80054507_+ncRNA_intronic
ADediting_1551258chr18_80054561_+ncRNA_intronic
ADediting_1551259chr18_80054592_+ncRNA_intronic
ADediting_1551260chr18_80054603_+ncRNA_intronic
ADediting_1551261chr18_80054605_+ncRNA_intronic
ADediting_1551262chr18_80054634_+ncRNA_intronic
ADediting_1551263chr18_80054637_+ncRNA_intronic
ADediting_1551264chr18_80054744_+ncRNA_intronic
ADediting_1551265chr18_80055305_+ncRNA_intronic
ADediting_1551266chr18_80055381_+ncRNA_intronic
ADediting_1551267chr18_80061509_+ncRNA_intronic
ADediting_1551268chr18_80061510_+ncRNA_intronic
ADediting_1551269chr18_80061526_+ncRNA_intronic
ADediting_1551270chr18_80061554_+ncRNA_intronic
ADediting_1551271chr18_80061566_+ncRNA_intronic
ADediting_1551272chr18_80061586_+ncRNA_intronic
ADediting_1551273chr18_80061587_+ncRNA_intronic
ADediting_1551274chr18_80061615_+ncRNA_intronic
ADediting_1551275chr18_80061616_+ncRNA_intronic
ADediting_1551276chr18_80061634_+ncRNA_intronic
ADediting_1551277chr18_80061636_+ncRNA_intronic
ADediting_1551278chr18_80061645_+ncRNA_intronic
ADediting_1551279chr18_80062527_+ncRNA_intronic
ADediting_1551280chr18_80062539_+ncRNA_intronic
ADediting_1551281chr18_80070255_+ncRNA_exonic
ADediting_1551282chr18_80070321_+ncRNA_exonic
ADediting_1551283chr18_80070406_+ncRNA_exonic
ADediting_1551284chr18_80070467_+ncRNA_exonic
ADediting_1551285chr18_80070496_+ncRNA_exonic
ADediting_1551286chr18_80074172_+ncRNA_intronic
ADediting_1551287chr18_80074189_+ncRNA_intronic
ADediting_1551288chr18_80074196_+ncRNA_intronic
ADediting_1551289chr18_80074309_+ncRNA_intronic
ADediting_1551290chr18_80074370_+ncRNA_intronic
ADediting_1551291chr18_80074397_+ncRNA_intronic
ADediting_1551292chr18_80089617_+ncRNA_intronic
ADediting_1551293chr18_80089677_+ncRNA_intronic
ADediting_1551294chr18_80089702_+ncRNA_intronic
ADediting_1551295chr18_80089735_+ncRNA_intronic

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_699275chr18_80052385_+SINEAluName=AluSx
ADediting_699276chr18_80052493_+SINEAluName=AluSx
ADediting_699277chr18_80052561_+SINEAluName=AluSx
ADediting_699278chr18_80053112_+SINEAluName=AluJb
ADediting_699279chr18_80053117_+SINEAluName=AluJb
ADediting_699280chr18_80054435_+LINEL1Name=L1PB4
ADediting_699281chr18_80054463_+LINEL1Name=L1PB4
ADediting_699282chr18_80054465_+LINEL1Name=L1PB4
ADediting_699283chr18_80054466_+LINEL1Name=L1PB4
ADediting_699284chr18_80054486_+LINEL1Name=L1PB4
ADediting_699285chr18_80054490_+LINEL1Name=L1PB4
ADediting_699286chr18_80054505_+LINEL1Name=L1PB4
ADediting_699287chr18_80054508_+LINEL1Name=L1PB4
ADediting_699288chr18_80054509_+LINEL1Name=L1PB4
ADediting_699289chr18_80054517_+LINEL1Name=L1PB4
ADediting_699290chr18_80054534_+LINEL1Name=L1PB4
ADediting_699291chr18_80054547_+LINEL1Name=L1PB4
ADediting_699292chr18_80054548_+LINEL1Name=L1PB4
ADediting_699293chr18_80054559_+LINEL1Name=L1PB4
ADediting_699294chr18_80054580_+LINEL1Name=L1PB4
ADediting_699295chr18_80054586_+LINEL1Name=L1PB4
ADediting_699296chr18_80054589_+LINEL1Name=L1PB4
ADediting_699297chr18_80054598_+LINEL1Name=L1PB4
ADediting_699298chr18_80054604_+LINEL1Name=L1PB4
ADediting_699299chr18_80054610_+LINEL1Name=L1PB4
ADediting_699300chr18_80054624_+LINEL1Name=L1PB4
ADediting_699301chr18_80054625_+LINEL1Name=L1PB4
ADediting_699302chr18_80054632_+LINEL1Name=L1PB4
ADediting_699303chr18_80054640_+LINEL1Name=L1PB4
ADediting_699304chr18_80054650_+LINEL1Name=L1PB4
ADediting_699305chr18_80054651_+LINEL1Name=L1PB4
ADediting_699306chr18_80054721_+LINEL1Name=L1PB4
ADediting_699307chr18_80061578_+LINEL1Name=L1PA6
ADediting_699308chr18_80061579_+LINEL1Name=L1PA6
ADediting_699309chr18_80061590_+LINEL1Name=L1PA6
ADediting_699310chr18_80062409_+SINEAluName=AluY
ADediting_699311chr18_80062472_+SINEAluName=AluY
ADediting_699312chr18_80070264_+SINEAluName=AluSg
ADediting_699313chr18_80070272_+SINEAluName=AluSg
ADediting_699314chr18_80070370_+SINEAluName=AluSg
ADediting_699315chr18_80070396_+SINEAluName=AluSg
ADediting_699316chr18_80070397_+SINEAluName=AluSg
ADediting_699317chr18_80070402_+SINEAluName=AluSg
ADediting_699318chr18_80070423_+SINEAluName=AluSg
ADediting_699319chr18_80074234_+SINEAluName=AluJr
ADediting_699320chr18_80077366_+SINEAluName=AluJr
ADediting_699321chr18_80077368_+SINEAluName=AluJr
ADediting_699322chr18_80077395_+SINEAluName=AluJr
ADediting_699323chr18_80077415_+SINEAluName=AluJr
ADediting_699324chr18_80077417_+SINEAluName=AluJr
ADediting_699325chr18_80082968_+SINEAluName=AluY
ADediting_699326chr18_80082996_+SINEAluName=AluY
ADediting_699327chr18_80082997_+SINEAluName=AluY
ADediting_699328chr18_80083007_+SINEAluName=AluY
ADediting_699329chr18_80083069_+SINEAluName=AluY
ADediting_699330chr18_80083096_+SINEAluName=AluY
ADediting_699331chr18_80083111_+SINEAluName=AluY
ADediting_699332chr18_80083140_+SINEAluName=AluY
ADediting_699333chr18_80083746_+SINEAluName=AluY
ADediting_699334chr18_80083747_+SINEAluName=AluY
ADediting_699335chr18_80083897_+SINEAluName=AluJo
ADediting_699336chr18_80084660_+SINEAluName=AluJo
ADediting_699337chr18_80084692_+SINEAluName=AluJo
ADediting_699338chr18_80084842_+SINEAluName=AluJo
ADediting_699339chr18_80084866_+SINEAluName=AluJo
ADediting_699340chr18_80089260_+SINEAluName=AluY
ADediting_699341chr18_80090776_+SINEAluName=AluJb
ADediting_699342chr18_80090859_+SINEAluName=AluJb
ADediting_699343chr18_80092552_+SINEAluName=AluSg
ADediting_699344chr18_80092555_+SINEAluName=AluSg
ADediting_699345chr18_80093574_+SINEAluName=AluJb
ADediting_1551244chr18_80050824_+SINEAluName=FAM
ADediting_1551245chr18_80050837_+SINEAluName=FAM
ADediting_1551246chr18_80050929_+SINEAluName=FAM
ADediting_1551247chr18_80054403_+LINEL1Name=L1PB4
ADediting_1551248chr18_80054416_+LINEL1Name=L1PB4
ADediting_1551249chr18_80054436_+LINEL1Name=L1PB4
ADediting_1551250chr18_80054447_+LINEL1Name=L1PB4
ADediting_1551251chr18_80054448_+LINEL1Name=L1PB4
ADediting_1551252chr18_80054453_+LINEL1Name=L1PB4
ADediting_1551253chr18_80054458_+LINEL1Name=L1PB4
ADediting_1551254chr18_80054460_+LINEL1Name=L1PB4
ADediting_1551255chr18_80054469_+LINEL1Name=L1PB4
ADediting_1551256chr18_80054471_+LINEL1Name=L1PB4
ADediting_1551257chr18_80054507_+LINEL1Name=L1PB4
ADediting_1551258chr18_80054561_+LINEL1Name=L1PB4
ADediting_1551259chr18_80054592_+LINEL1Name=L1PB4
ADediting_1551260chr18_80054603_+LINEL1Name=L1PB4
ADediting_1551261chr18_80054605_+LINEL1Name=L1PB4
ADediting_1551262chr18_80054634_+LINEL1Name=L1PB4
ADediting_1551263chr18_80054637_+LINEL1Name=L1PB4
ADediting_1551264chr18_80054744_+LINEL1Name=L1PB4
ADediting_1551265chr18_80055305_+SINEAluName=FLAM_A
ADediting_1551266chr18_80055381_+SINEAluName=FLAM_A
ADediting_1551267chr18_80061509_+LINEL1Name=L1PA6
ADediting_1551268chr18_80061510_+LINEL1Name=L1PA6
ADediting_1551269chr18_80061526_+LINEL1Name=L1PA6
ADediting_1551270chr18_80061554_+LINEL1Name=L1PA6
ADediting_1551271chr18_80061566_+LINEL1Name=L1PA6
ADediting_1551272chr18_80061586_+LINEL1Name=L1PA6
ADediting_1551273chr18_80061587_+LINEL1Name=L1PA6
ADediting_1551274chr18_80061615_+LINEL1Name=L1PA6
ADediting_1551275chr18_80061616_+LINEL1Name=L1PA6
ADediting_1551276chr18_80061634_+LINEL1Name=L1PA6
ADediting_1551277chr18_80061636_+LINEL1Name=L1PA6
ADediting_1551278chr18_80061645_+LINEL1Name=L1PA6
ADediting_1551279chr18_80062527_+SINEAluName=AluY
ADediting_1551280chr18_80062539_+SINEAluName=AluY
ADediting_1551281chr18_80070255_+SINEAluName=AluSg
ADediting_1551282chr18_80070321_+SINEAluName=AluSg
ADediting_1551283chr18_80070406_+SINEAluName=AluSg
ADediting_1551284chr18_80070467_+SINEAluName=AluSg
ADediting_1551285chr18_80070496_+SINEAluName=AluSg
ADediting_1551286chr18_80074172_+SINEAluName=AluJr
ADediting_1551287chr18_80074189_+SINEAluName=AluJr
ADediting_1551288chr18_80074196_+SINEAluName=AluJr
ADediting_1551289chr18_80074309_+SINEAluName=AluJr
ADediting_1551290chr18_80074370_+SINEAluName=AluJr
ADediting_1551291chr18_80074397_+SINEAluName=AluJr
ADediting_1551292chr18_80089617_+SINEAluName=AluJr4
ADediting_1551293chr18_80089677_+SINEAluName=AluJr4
ADediting_1551294chr18_80089702_+SINEAluName=AluJr4
ADediting_1551295chr18_80089735_+SINEAluName=AluJr4

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RNA A-to-I editing events in the alternative splicing sites for RBFADN

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RBFADN

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
boxplot
boxplot
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
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Soverview
Soverview
Soverview

check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
ADeditome IDChrPositoingSkipped exonENSGENSTs

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Protein coding region RNA A-to-I editings for RBFADN

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for RBFADN

check buttonRNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
all structure

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1551283chr18_80070406_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-1207-3pchr1880070400800704067mer-m88007039080070407140-12.56
ADediting_1551283chr18_80070406_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-646chr1880070402800704087mer-m88007039180070409145-14.99
ADediting_1551284chr18_80070467_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-149-5pchr1880070461800704677mer-m88007044680070468148-24
ADediting_1551285chr18_80070496_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-500b-3pchr1880070490800704978mer-1a8007047980070497155-23.07
ADediting_1551285chr18_80070496_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-6773-3pchr1880070494800705018mer-1a8007048080070501142-15.63
ADediting_1551285chr18_80070496_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-6879-3pchr1880070492800704998mer-1a8007047780070499142-19.91
ADediting_699312chr18_80070264_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-365a-5pchr1880070262800702698mer-1a8007024780070269150-22.38
ADediting_699312chr18_80070264_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-365b-5pchr1880070262800702698mer-1a8007024880070269153-21.6
ADediting_699314chr18_80070370_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-3190-5pchr1880070369800703757mer-m88007035780070376143-16.24
ADediting_699314chr18_80070370_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-548schr1880070368800703747mer-m88007035380070375145-11.19
ADediting_699315chr18_80070396_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-513a-5pchr1880070391800703977mer-m88007038180070398144-16.29
ADediting_699315chr18_80070396_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-638chr1880070396800704027mer-1a8007037880070402147-30.82

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1551281chr18_80070255_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-6807-5pchr1880070249800702557mer-m88006990080070256143-18.21
ADediting_1551281chr18_80070255_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-6863chr1880070254800702607mer-m88007023980070261141-15.65
ADediting_1551282chr18_80070321_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-3663-5pchr1880070316800703227mer-m88007030480070323148-21.98
ADediting_1551282chr18_80070321_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-6131chr1880070317800703237mer-m88007030680070324140-18.33
ADediting_1551282chr18_80070321_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-6843-3pchr1880070315800703217mer-m88007030380070322152-19.47
ADediting_1551282chr18_80070321_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-6848-3pchr1880070315800703217mer-m88007030580070322142-14.3
ADediting_1551283chr18_80070406_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-6869-5pchr1880070404800704107mer-m88007038980070411146-19.73
ADediting_699312chr18_80070264_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-205-3pchr1880070259800702657mer-m88007024480070266146-16.47
ADediting_699312chr18_80070264_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-3167chr1880070261800702677mer-m88007024780070268155-15.99
ADediting_699313chr18_80070272_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-128-3pchr1880070271800702777mer-m88007025880070278146-15.39
ADediting_699313chr18_80070272_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-3681-3pchr1880070271800702777mer-m88007025780070278150-15.13
ADediting_699313chr18_80070272_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-512-3pchr1880070268800702747mer-m88007025480070275152-14.51
ADediting_699314chr18_80070370_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-4735-5pchr1880070365800703717mer-m88007035180070372140-5.48
ADediting_699314chr18_80070370_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-4794chr1880070369800703757mer-m88007035580070376140-12.3
ADediting_699314chr18_80070370_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-664a-5pchr1880070369800703757mer-m88007035380070376141-13.02
ADediting_699315chr18_80070396_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-10399-5pchr1880070392800703987mer-m88007037980070399140-10.25
ADediting_699315chr18_80070396_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-6504-3pchr1880070392800703987mer-m88007038180070399152-15.93
ADediting_699315chr18_80070396_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-7151-3pchr1880070390800703978mer-1a8007037780070397140-12.49
ADediting_699316chr18_80070397_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-10399-5pchr1880070392800703987mer-m88007037980070399140-10.25
ADediting_699316chr18_80070397_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-5089-5pchr1880070396800704027mer-m88007038480070403148-15.19
ADediting_699316chr18_80070397_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-6504-3pchr1880070392800703987mer-m88007038180070399152-15.93
ADediting_699317chr18_80070402_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-5089-5pchr1880070396800704027mer-m88007038480070403148-15.19
ADediting_699317chr18_80070402_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-6506-5pchr1880070397800704037mer-m88007038280070404144-15.01
ADediting_699318chr18_80070423_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-1976chr1880070421800704288mer-1a8007040880070428153-25.04
ADediting_699318chr18_80070423_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-6747-3pchr1880070419800704268mer-1a8007040480070426149-23.42

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1337757chr7_5495852_-ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-589-3pchr1880064993800649997mer-m88006497680065000162-20.73
ADediting_1337757chr7_5495852_-ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-589-3pchr1880065465800654717mer-m88006544980065472142-16.08
ADediting_1337758chr7_5495892_-ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-589-5pchr1880064615800646228mer-1a8006460180064622151-23.15
ADediting_1535951chr14_100874558_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-337-3pchr1880063648800636558mer-1a8006363580063655142-8.94
ADediting_1535954chr14_101045974_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-381-3pchr1880063101800631077mer-m88006308680063108148-15.64
ADediting_1596844chr1_162342605_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-556-3pchr1880065707800657137mer-m88006569380065714150-12.22
ADediting_1631458chr19_40282624_-ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-641chr1880064765800647717mer-m88006474780064772144-15.25
ADediting_1631458chr19_40282624_-ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-641chr1880065763800657697mer-1a8006574680065769140-18.22
ADediting_286380chr11_79422188_-ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-5579-3pchr1880063123800631308mer-1a8006310980063130148-12.09
ADediting_496066chr15_66496985_-ENSG00000261126.7ENST00000564686.5RBFADN-202hsa-miR-4512chr1880095464800954707mer-m88009545080095471142-15.1
ADediting_496066chr15_66496985_-ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-4512chr1880070603800706097mer-m88007058980070610140-14.3

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1535951chr14_100874558_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-337-3pchr1880064591800645977mer-m88006457680064598150-17.59
ADediting_1556067chr19_40282625_-ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-641chr1880064194800642007mer-m88006417780064201147-11.97
ADediting_1631458chr19_40282624_-ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-641chr1880064194800642007mer-m88006417780064201147-11.97
ADediting_843620chr2_207754818_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-4775chr1880066440800664478mer-1a8006642680066447140-10.66
ADediting_843620chr2_207754818_+ENSG00000261126.7ENST00000568911.5RBFADN-204hsa-miR-4775chr1880070627800706337mer-m88007061380070634153-10.87

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for RBFADN

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000568911.5lncRNASoverviewSoverview

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
ADediting_1551281ENST00000568911.5chr18_80070255_+4684-2002.50-2002.50-1999.50
ADediting_699312ENST00000568911.5chr18_80070264_+4693-2005.20-2002.50-1999.50
ADediting_699313ENST00000568911.5chr18_80070272_+4701-2002.10-2002.50-1999.50
ADediting_1551282ENST00000568911.5chr18_80070321_+4750-2001.80-2002.50-1999.50
ADediting_699314ENST00000568911.5chr18_80070370_+4799-2002.20-2002.50-1999.50
ADediting_699315ENST00000568911.5chr18_80070396_+4825-2001.60-2002.50-1999.50
ADediting_699316ENST00000568911.5chr18_80070397_+4826-2002.50-2002.50-1999.50
ADediting_699317ENST00000568911.5chr18_80070402_+4831-2001.80-2002.50-1999.50
ADediting_1551283ENST00000568911.5chr18_80070406_+4835-2002.20-2002.50-1999.50
ADediting_699318ENST00000568911.5chr18_80070423_+4852-2001.80-2002.50-1999.50
ADediting_1551284ENST00000568911.5chr18_80070467_+4896-2002.20-2002.50-1999.50
ADediting_1551285ENST00000568911.5chr18_80070496_+4925-2001.60-2002.50-1999.50

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Relation with ADAR for RBFADN

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
CERADediting_699296chr18_80054589_+0.0002622396182557850.2938716310374886.63456358400385e-050.3197831505688590.01820412971114610.192612978910647
CERADediting_699301chr18_80054625_+0.0002268114705948730.2967247861330264.79469883378197e-050.3255734561163180.2515494739501310.0941986866569278
DLPFCADediting_699334chr18_80083747_+0.03818406227465780.1177969801167940.8813758613259650.008509650683733496.42624147392235e-170.450749152425714

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFC1.39708550700831e-160.4463141555083431.00395883835872e-200.4967833610477871.6752053888916e-140.417446258333078
AC1.13268581094128e-090.3730130174254755.76185385707333e-090.3578376605250644.24431911567268e-070.313352555442155
PCC1.41371105745428e-050.3084847707846642.68317826729873e-050.2988066827939461.22507384782587e-050.310601938437571
CER5.08193073758736e-070.3965193767613595.18162380386664e-110.5033899856473870.005861288287992880.223988748144375
TCX0.0003033979690686790.2909755638712880.03608928897213960.1712971433874140.0001438257069403850.30549267437426
FP6.10924708512098e-190.6021207597326554.8448748612234e-190.6034988539458897.92693140044911e-090.415677626131851
IFG0.003136832347658820.5667607392439260.0008816496022114650.622900882592220.001134129171191840.612549652020284
PG1.80935831011032e-090.4229518952924641.12451769083245e-170.5737764724637670.7879277991897540.0198561277256214
STG1.70060191864743e-050.4505916809017842.40668927164951e-060.4886523770647430.002568225871718310.324878339066196

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Relation with AD stages for RBFADN

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.
CER0.000171337445650640.35394524578073
TCX0.001443050791496780.305626304088137

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RelatedDrugs for RBFADN

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for RBFADN

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource