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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for RASA4DP |
 Gene summary |
| Gene information | Gene symbol | RASA4DP | Gene ID | 100133005 |
| Gene name | RAS p21 protein activator 4CD, pseudogene | |
| Synonyms | - | |
| Cytomap | 7q22.1 | |
| Type of gene | pseudo | |
| Description | RAS p21 protein activator 4 pseudogene | |
| Modification date | 20200313 | |
| UniProtAcc | ||
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for RASA4DP |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_1291116(102683751, -), ADediting_1291117(102683752, -), ADediting_1291118(102683756, -), ADediting_1291119(102683798, -), ADediting_1291120(102683822, -), ADediting_1291121(102683848, -), ADediting_1291122(102683852, -), ADediting_1291123(102683853, -), ADediting_1291124(102683855, -), ADediting_1291125(102683860, -), ADediting_1291126(102683861, -), ADediting_1291127(102683864, -), ADediting_1291128(102683884, -), ADediting_1291129(102683888, -), ADediting_1291130(102683955, -), ADediting_1291131(102683956, -), ADediting_1291132(102683964, -), ADediting_1291133(102684997, -), ADediting_1291134(102685003, -), ADediting_1291135(102686404, -), ADediting_1585337(102683879, -), |
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RNA editing positional annotations for RASA4DP using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1291116 | chr7_102683751_- | ncRNA_intronic |
| ADediting_1291117 | chr7_102683752_- | ncRNA_intronic |
| ADediting_1291118 | chr7_102683756_- | ncRNA_intronic |
| ADediting_1291119 | chr7_102683798_- | ncRNA_intronic |
| ADediting_1291120 | chr7_102683822_- | ncRNA_intronic |
| ADediting_1291121 | chr7_102683848_- | ncRNA_intronic |
| ADediting_1291122 | chr7_102683852_- | ncRNA_intronic |
| ADediting_1291123 | chr7_102683853_- | ncRNA_intronic |
| ADediting_1291124 | chr7_102683855_- | ncRNA_intronic |
| ADediting_1291125 | chr7_102683860_- | ncRNA_intronic |
| ADediting_1291126 | chr7_102683861_- | ncRNA_intronic |
| ADediting_1291127 | chr7_102683864_- | ncRNA_intronic |
| ADediting_1291128 | chr7_102683884_- | ncRNA_intronic |
| ADediting_1291129 | chr7_102683888_- | ncRNA_intronic |
| ADediting_1291130 | chr7_102683955_- | ncRNA_intronic |
| ADediting_1291131 | chr7_102683956_- | ncRNA_intronic |
| ADediting_1291132 | chr7_102683964_- | ncRNA_intronic |
| ADediting_1291133 | chr7_102684997_- | ncRNA_intronic |
| ADediting_1291134 | chr7_102685003_- | ncRNA_intronic |
| ADediting_1291135 | chr7_102686404_- | ncRNA_intronic |
| ADediting_1585337 | chr7_102683879_- | ncRNA_intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1291116 | chr7_102683751_- | SINE | Alu | Name=AluY |
| ADediting_1291117 | chr7_102683752_- | SINE | Alu | Name=AluY |
| ADediting_1291118 | chr7_102683756_- | SINE | Alu | Name=AluY |
| ADediting_1291119 | chr7_102683798_- | SINE | Alu | Name=AluY |
| ADediting_1291120 | chr7_102683822_- | SINE | Alu | Name=AluY |
| ADediting_1291121 | chr7_102683848_- | SINE | Alu | Name=AluY |
| ADediting_1291122 | chr7_102683852_- | SINE | Alu | Name=AluY |
| ADediting_1291123 | chr7_102683853_- | SINE | Alu | Name=AluY |
| ADediting_1291124 | chr7_102683855_- | SINE | Alu | Name=AluY |
| ADediting_1291125 | chr7_102683860_- | SINE | Alu | Name=AluY |
| ADediting_1291126 | chr7_102683861_- | SINE | Alu | Name=AluY |
| ADediting_1291127 | chr7_102683864_- | SINE | Alu | Name=AluY |
| ADediting_1291128 | chr7_102683884_- | SINE | Alu | Name=AluY |
| ADediting_1291129 | chr7_102683888_- | SINE | Alu | Name=AluY |
| ADediting_1291130 | chr7_102683955_- | SINE | Alu | Name=AluY |
| ADediting_1291131 | chr7_102683956_- | SINE | Alu | Name=AluY |
| ADediting_1291132 | chr7_102683964_- | SINE | Alu | Name=AluY |
| ADediting_1291133 | chr7_102684997_- | SINE | Alu | Name=AluSx |
| ADediting_1291134 | chr7_102685003_- | SINE | Alu | Name=AluSx |
| ADediting_1291135 | chr7_102686404_- | SINE | Alu | Name=AluSx1 |
| ADediting_1585337 | chr7_102683879_- | SINE | Alu | Name=AluY |
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RNA A-to-I editing events in the alternative splicing sites for RASA4DP |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RASA4DP |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |