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![]() | Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for TNRC6C-AS1 |
Gene summary |
| Gene information | Gene symbol | TNRC6C-AS1 | Gene ID | 100131096 |
| Gene name | TNRC6C antisense RNA 1 | |
| Synonyms | TMC6|lnc | |
| Cytomap | 17q25.3 | |
| Type of gene | ncRNA | |
| Description | - | |
| Modification date | 20200313 | |
| UniProtAcc | ||
| Context |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for TNRC6C-AS1 |
RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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RNA editing frequencies across three data sets. |
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The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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RNA A-to-I editing events in AD. |
| ADediting_669416(78108917, -), ADediting_669417(78108925, -), ADediting_669418(78108936, -), ADediting_669419(78108937, -), ADediting_669420(78109040, -), ADediting_669422(78109579, -), ADediting_669423(78109895, -), ADediting_669424(78109901, -), ADediting_669425(78109944, -), ADediting_669426(78109954, -), ADediting_669427(78109957, -), ADediting_669428(78109958, -), ADediting_669430(78110343, -), ADediting_669431(78110346, -), ADediting_669432(78110377, -), ADediting_669433(78110464, -), ADediting_669434(78110522, -), ADediting_1549501(78108952, -), ADediting_1549502(78110401, -), ADediting_1549503(78110466, -), |
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RNA editing positional annotations for TNRC6C-AS1 using Annovar |
Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_669416 | chr17_78108917_- | ncRNA_exonic |
| ADediting_669417 | chr17_78108925_- | ncRNA_exonic |
| ADediting_669418 | chr17_78108936_- | ncRNA_exonic |
| ADediting_669419 | chr17_78108937_- | ncRNA_exonic |
| ADediting_669420 | chr17_78109040_- | ncRNA_exonic |
| ADediting_669422 | chr17_78109579_- | ncRNA_exonic |
| ADediting_669423 | chr17_78109895_- | ncRNA_exonic |
| ADediting_669424 | chr17_78109901_- | ncRNA_exonic |
| ADediting_669425 | chr17_78109944_- | ncRNA_exonic |
| ADediting_669426 | chr17_78109954_- | ncRNA_exonic |
| ADediting_669427 | chr17_78109957_- | ncRNA_exonic |
| ADediting_669428 | chr17_78109958_- | ncRNA_exonic |
| ADediting_669430 | chr17_78110343_- | ncRNA_exonic |
| ADediting_669431 | chr17_78110346_- | ncRNA_exonic |
| ADediting_669432 | chr17_78110377_- | ncRNA_exonic |
| ADediting_669433 | chr17_78110464_- | ncRNA_exonic |
| ADediting_669434 | chr17_78110522_- | ncRNA_exonic |
| ADediting_1549501 | chr17_78108952_- | ncRNA_exonic |
| ADediting_1549502 | chr17_78110401_- | ncRNA_exonic |
| ADediting_1549503 | chr17_78110466_- | ncRNA_exonic |
Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_669416 | chr17_78108917_- | SINE | Alu | Name=AluJb |
| ADediting_669417 | chr17_78108925_- | SINE | Alu | Name=AluJb |
| ADediting_669418 | chr17_78108936_- | SINE | Alu | Name=AluJb |
| ADediting_669419 | chr17_78108937_- | SINE | Alu | Name=AluJb |
| ADediting_669420 | chr17_78109040_- | SINE | Alu | Name=AluJb |
| ADediting_669422 | chr17_78109579_- | SINE | Alu | Name=FRAM |
| ADediting_669423 | chr17_78109895_- | SINE | Alu | Name=AluSp |
| ADediting_669424 | chr17_78109901_- | SINE | Alu | Name=AluSp |
| ADediting_669425 | chr17_78109944_- | SINE | Alu | Name=AluSp |
| ADediting_669426 | chr17_78109954_- | SINE | Alu | Name=AluSp |
| ADediting_669427 | chr17_78109957_- | SINE | Alu | Name=AluSp |
| ADediting_669428 | chr17_78109958_- | SINE | Alu | Name=AluSp |
| ADediting_669430 | chr17_78110343_- | SINE | Alu | Name=AluSz |
| ADediting_669431 | chr17_78110346_- | SINE | Alu | Name=AluSz |
| ADediting_669432 | chr17_78110377_- | SINE | Alu | Name=AluSz |
| ADediting_669433 | chr17_78110464_- | SINE | Alu | Name=AluSz |
| ADediting_669434 | chr17_78110522_- | SINE | Alu | Name=AluJr4 |
| ADediting_1549501 | chr17_78108952_- | SINE | Alu | Name=AluJb |
| ADediting_1549502 | chr17_78110401_- | SINE | Alu | Name=AluSz |
| ADediting_1549503 | chr17_78110466_- | SINE | Alu | Name=AluSz |
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RNA A-to-I editing events in the alternative splicing sites for TNRC6C-AS1 |
RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TNRC6C-AS1 |
Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.* The grey color means N/A. |
Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.* Click on the image to enlarge it in a new window. |
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- Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.* Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for TNRC6C-AS1 |
- Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for TNRC6C-AS1 |
RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1549502 | chr17_78110401_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-6771-5p | chr17 | 78110400 | 78110406 | 7mer-m8 | 78110399 | 78110418 | 160 | -31.16 |
| ADediting_669423 | chr17_78109895_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-340-3p | chr17 | 78109894 | 78109900 | 7mer-m8 | 78109893 | 78109914 | 149 | -17.74 |
| ADediting_669423 | chr17_78109895_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-6827-3p | chr17 | 78109894 | 78109900 | 7mer-m8 | 78109893 | 78109913 | 153 | -17.53 |
| ADediting_669426 | chr17_78109954_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-3614-5p | chr17 | 78109954 | 78109960 | 7mer-m8 | 78109953 | 78109976 | 157 | -25.27 |
| ADediting_669426 | chr17_78109954_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-4691-3p | chr17 | 78109950 | 78109956 | 7mer-m8 | 78109949 | 78109976 | 150 | -26.36 |
| ADediting_669427 | chr17_78109957_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-204-3p | chr17 | 78109957 | 78109963 | 7mer-m8 | 78109956 | 78109975 | 152 | -18.77 |
| ADediting_669427 | chr17_78109957_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-4646-5p | chr17 | 78109957 | 78109963 | 7mer-m8 | 78109956 | 78109976 | 158 | -25.98 |
| ADediting_669428 | chr17_78109958_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-425-3p | chr17 | 78109957 | 78109963 | 7mer-m8 | 78109956 | 78109976 | 145 | -12.29 |
| ADediting_669432 | chr17_78110377_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-4666b | chr17 | 78110374 | 78110380 | 7mer-1a | 78110374 | 78110394 | 146 | -24.15 |
| ADediting_669433 | chr17_78110464_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-345-3p | chr17 | 78110463 | 78110469 | 7mer-m8 | 78110462 | 78110483 | 148 | -16.44 |
| ADediting_669433 | chr17_78110464_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-3667-5p | chr17 | 78110459 | 78110465 | 7mer-m8 | 78110458 | 78110478 | 154 | -16.77 |
| ADediting_669433 | chr17_78110464_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-4725-5p | chr17 | 78110461 | 78110467 | 7mer-m8 | 78110460 | 78110480 | 143 | -16.24 |
| ADediting_669433 | chr17_78110464_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-504-5p | chr17 | 78110461 | 78110467 | 7mer-m8 | 78110460 | 78110481 | 141 | -19.27 |
| ADediting_669434 | chr17_78110522_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-1203 | chr17 | 78110520 | 78110527 | 8mer-1a | 78110520 | 78110538 | 151 | -22.69 |
RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1549502 | chr17_78110401_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-12126 | chr17 | 78110397 | 78110404 | 8mer-1a | 78110397 | 78110420 | 147 | -14.07 |
| ADediting_1549502 | chr17_78110401_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-30b-3p | chr17 | 78110400 | 78110407 | 8mer-1a | 78110400 | 78110421 | 151 | -15.38 |
| ADediting_1549502 | chr17_78110401_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-3689a-3p | chr17 | 78110400 | 78110407 | 8mer-1a | 78110400 | 78110420 | 154 | -19.91 |
| ADediting_1549502 | chr17_78110401_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-3689b-3p | chr17 | 78110400 | 78110407 | 8mer-1a | 78110400 | 78110422 | 155 | -20.61 |
| ADediting_1549502 | chr17_78110401_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-3689c | chr17 | 78110400 | 78110407 | 8mer-1a | 78110400 | 78110422 | 155 | -20.61 |
| ADediting_1549502 | chr17_78110401_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-6779-5p | chr17 | 78110400 | 78110407 | 8mer-1a | 78110400 | 78110418 | 148 | -19.56 |
| ADediting_1549502 | chr17_78110401_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-6780a-5p | chr17 | 78110400 | 78110407 | 8mer-1a | 78110400 | 78110422 | 149 | -24.5 |
| ADediting_1549502 | chr17_78110401_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-887-5p | chr17 | 78110400 | 78110406 | 7mer-m8 | 78110399 | 78110418 | 143 | -20.72 |
| ADediting_1549503 | chr17_78110466_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-146a-3p | chr17 | 78110463 | 78110469 | 7mer-m8 | 78110462 | 78110483 | 145 | -11.31 |
| ADediting_1549503 | chr17_78110466_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-4522 | chr17 | 78110461 | 78110467 | 7mer-m8 | 78110460 | 78110480 | 140 | -13.67 |
| ADediting_1549503 | chr17_78110466_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-4714-5p | chr17 | 78110462 | 78110468 | 7mer-m8 | 78110461 | 78110482 | 140 | -10.54 |
| ADediting_1549503 | chr17_78110466_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-4766-5p | chr17 | 78110464 | 78110470 | 7mer-1a | 78110464 | 78110484 | 149 | -18.62 |
| ADediting_669423 | chr17_78109895_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-10a-5p | chr17 | 78109891 | 78109897 | 7mer-m8 | 78109890 | 78109912 | 145 | -13.67 |
| ADediting_669423 | chr17_78109895_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-10b-5p | chr17 | 78109891 | 78109897 | 7mer-m8 | 78109890 | 78109912 | 140 | -13.05 |
| ADediting_669423 | chr17_78109895_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-339-5p | chr17 | 78109892 | 78109898 | 7mer-m8 | 78109891 | 78109915 | 151 | -18.58 |
| ADediting_669423 | chr17_78109895_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-4421 | chr17 | 78109893 | 78109899 | 7mer-m8 | 78109892 | 78109913 | 154 | -16.19 |
| ADediting_669423 | chr17_78109895_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-5699-3p | chr17 | 78109893 | 78109899 | 7mer-m8 | 78109892 | 78109913 | 153 | -17.34 |
| ADediting_669423 | chr17_78109895_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-6818-3p | chr17 | 78109895 | 78109901 | 7mer-m8 | 78109894 | 78109915 | 140 | -12.56 |
| ADediting_669424 | chr17_78109901_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-593-3p | chr17 | 78109895 | 78109901 | 7mer-1a | 78109895 | 78109913 | 140 | -19.02 |
| ADediting_669426 | chr17_78109954_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-5690 | chr17 | 78109950 | 78109956 | 7mer-m8 | 78109949 | 78109969 | 145 | -16.74 |
| ADediting_669427 | chr17_78109957_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-12126 | chr17 | 78109954 | 78109961 | 8mer-1a | 78109954 | 78109977 | 155 | -14.03 |
| ADediting_669427 | chr17_78109957_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-450a-1-3p | chr17 | 78109957 | 78109963 | 7mer-m8 | 78109956 | 78109977 | 147 | -10.48 |
| ADediting_669428 | chr17_78109958_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-12126 | chr17 | 78109954 | 78109961 | 8mer-1a | 78109954 | 78109977 | 155 | -14.03 |
| ADediting_669428 | chr17_78109958_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-450a-1-3p | chr17 | 78109957 | 78109963 | 7mer-m8 | 78109956 | 78109977 | 147 | -10.48 |
| ADediting_669430 | chr17_78110343_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-3675-3p | chr17 | 78110338 | 78110344 | 7mer-m8 | 78110337 | 78110358 | 145 | -12.58 |
| ADediting_669430 | chr17_78110343_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-4684-5p | chr17 | 78110339 | 78110345 | 7mer-m8 | 78110338 | 78110359 | 151 | -13.17 |
| ADediting_669432 | chr17_78110377_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-675-3p | chr17 | 78110374 | 78110381 | 8mer-1a | 78110374 | 78110394 | 146 | -16.45 |
| ADediting_669433 | chr17_78110464_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-146a-3p | chr17 | 78110463 | 78110469 | 7mer-m8 | 78110462 | 78110483 | 145 | -11.31 |
| ADediting_669433 | chr17_78110464_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-4522 | chr17 | 78110461 | 78110467 | 7mer-m8 | 78110460 | 78110480 | 140 | -13.67 |
| ADediting_669433 | chr17_78110464_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-4714-5p | chr17 | 78110462 | 78110468 | 7mer-m8 | 78110461 | 78110482 | 140 | -10.54 |
| ADediting_669434 | chr17_78110522_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-516b-5p | chr17 | 78110520 | 78110526 | 7mer-m8 | 78110519 | 78110538 | 145 | -16.36 |
RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000204282.4 | ENST00000592939.1 | TNRC6C-AS1-202 | hsa-miR-5688 | chr17 | 78108106 | 78108112 | 7mer-m8 | 78108105 | 78108125 | 142 | -16.92 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-589-3p | chr17 | 78109719 | 78109725 | 7mer-m8 | 78109718 | 78109737 | 148 | -20.64 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-589-3p | chr17 | 78111669 | 78111675 | 7mer-m8 | 78111668 | 78111691 | 162 | -21.83 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000204282.4 | ENST00000592939.1 | TNRC6C-AS1-202 | hsa-miR-589-3p | chr17 | 78109719 | 78109725 | 7mer-m8 | 78109718 | 78109737 | 148 | -20.64 |
| ADediting_1391023 | chr8_140732605_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-151a-3p | chr17 | 78111480 | 78111486 | 7mer-m8 | 78111479 | 78111501 | 147 | -15.78 |
| ADediting_1391023 | chr8_140732605_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-151a-3p | chr17 | 78111500 | 78111506 | 7mer-m8 | 78111499 | 78111522 | 146 | -21.1 |
| ADediting_1471003 | chr9_63819626_+ | ENSG00000204282.4 | ENST00000592939.1 | TNRC6C-AS1-202 | hsa-miR-4477b | chr17 | 78108743 | 78108749 | 7mer-m8 | 78108742 | 78108763 | 140 | -8.78 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-381-3p | chr17 | 78109084 | 78109090 | 7mer-m8 | 78109083 | 78109104 | 148 | -15.17 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000204282.4 | ENST00000592939.1 | TNRC6C-AS1-202 | hsa-miR-381-3p | chr17 | 78108864 | 78108870 | 7mer-m8 | 78108863 | 78108884 | 156 | -22.03 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000204282.4 | ENST00000592939.1 | TNRC6C-AS1-202 | hsa-miR-381-3p | chr17 | 78109084 | 78109090 | 7mer-m8 | 78109083 | 78109104 | 148 | -15.17 |
RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_291761 | chr11_93733708_- | ENSG00000204282.4 | ENST00000589217.1 | TNRC6C-AS1-201 | hsa-miR-1304-3p | chr17 | 78110909 | 78110915 | 7mer-m8 | 78110908 | 78110929 | 151 | -15.94 |
RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for TNRC6C-AS1 |
- RNA A-to-I editing in mRNA.* Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000589217.1 | lncRNA | ![]() | ![]() |
RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_669422 | ENST00000589217.1 | chr17_78109579_- | 2221 | -1249.10 | -1246.80 | -1266.80 |
| ADediting_669423 | ENST00000589217.1 | chr17_78109895_- | 1905 | -1249.00 | -1246.80 | -1266.80 |
| ADediting_669424 | ENST00000589217.1 | chr17_78109901_- | 1899 | -1247.70 | -1246.80 | -1266.80 |
| ADediting_669425 | ENST00000589217.1 | chr17_78109944_- | 1856 | -1246.80 | -1246.80 | -1266.80 |
| ADediting_669426 | ENST00000589217.1 | chr17_78109954_- | 1846 | -1245.50 | -1246.80 | -1266.80 |
| ADediting_669427 | ENST00000589217.1 | chr17_78109957_- | 1843 | -1246.80 | -1246.80 | -1266.80 |
| ADediting_669428 | ENST00000589217.1 | chr17_78109958_- | 1842 | -1250.50 | -1246.80 | -1266.80 |
| ADediting_669430 | ENST00000589217.1 | chr17_78110343_- | 1457 | -1250.60 | -1246.80 | -1266.80 |
| ADediting_669431 | ENST00000589217.1 | chr17_78110346_- | 1454 | -1247.00 | -1246.80 | -1266.80 |
| ADediting_669432 | ENST00000589217.1 | chr17_78110377_- | 1423 | -1247.40 | -1246.80 | -1266.80 |
| ADediting_1549502 | ENST00000589217.1 | chr17_78110401_- | 1399 | -1246.20 | -1246.80 | -1266.80 |
| ADediting_669433 | ENST00000589217.1 | chr17_78110464_- | 1336 | -1253.70 | -1246.80 | -1266.80 |
| ADediting_1549503 | ENST00000589217.1 | chr17_78110466_- | 1334 | -1247.60 | -1246.80 | -1266.80 |
| ADediting_669434 | ENST00000589217.1 | chr17_78110522_- | 1278 | -1251.00 | -1246.80 | -1266.80 |
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Relation with ADAR for TNRC6C-AS1 |
Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 0.0152219456861969 | 0.137746212041217 | 0.0373937258868328 | 0.1182803395353 | 6.36129222431184e-33 | 0.60954987507172 |
| AC | 8.75246574537031e-13 | 0.431922991390612 | 8.91015088624338e-08 | 0.330329183585657 | 1.086700539535e-27 | 0.617663976479337 |
| PCC | 0.571653262881646 | 0.0411796554868102 | 0.551950286925112 | 0.043305196633385 | 1.85669447927365e-07 | 0.366413266616278 |
| CER | 0.412058889543192 | 0.067463253298488 | 0.13758575024608 | 0.121803881806413 | 3.53070334435073e-08 | 0.431499845123989 |
| TCX | 0.601498503031832 | 0.0429811160037683 | 3.14501553785255e-06 | -0.370073644902425 | 1.19486651842612e-23 | 0.702808093476308 |
| FP | 6.91893974385209e-06 | 0.329845895383758 | 4.45404103825736e-05 | 0.300995385106375 | 5.25470163710358e-29 | 0.713599106794179 |
| IFG | 0.518515731838022 | 0.135464980383513 | 0.933172743745256 | 0.0176743490382813 | 7.074542562663e-05 | 0.709775191833934 |
| PG | 0.384520806796699 | 0.0641285762746913 | 0.865522494464978 | -0.0125010257982525 | 2.20236590163433e-25 | 0.667847046445405 |
| STG | 0.0707692015930952 | 0.198164160927224 | 0.836162872918046 | 0.0229044134003384 | 3.9595695839707e-14 | 0.710019632329884 |
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Relation with AD stages for TNRC6C-AS1 |
Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| CER | 0.000647835897356015 | 0.323110235572518 |
| TCX | 0.000348604542379666 | 0.340928132666147 |
| IFG | 0.0394381920724362 | 0.414403525162768 |
| PG | 3.74878774262676e-08 | 0.389987368750087 |
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RelatedDrugs for TNRC6C-AS1 |
Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TNRC6C-AS1 |
Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |