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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for CYTOR |
 Gene summary |
| Gene information | Gene symbol | CYTOR | Gene ID | 112597 |
| Gene name | cytoskeleton regulator RNA | |
| Synonyms | C2orf59|LINC00152|NCRNA00152 | |
| Cytomap | 2p11.2 | |
| Type of gene | ncRNA | |
| Description | long intergenic non-protein coding RNA 152 | |
| Modification date | 20200313 | |
| UniProtAcc | ||
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for CYTOR |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_905705(87460249, +), ADediting_905727(87480866, +), ADediting_905728(87480876, +), ADediting_905729(87480877, +), ADediting_905730(87480898, +), ADediting_905731(87481186, +), ADediting_905732(87481197, +), ADediting_905733(87481210, +), ADediting_905734(87481216, +), ADediting_905735(87481234, +), ADediting_905736(87481368, +), ADediting_905737(87481930, +), ADediting_905743(87561356, +), |
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RNA editing positional annotations for CYTOR using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_905705 | chr2_87460249_+ | ncRNA_intronic |
| ADediting_905727 | chr2_87480866_+ | ncRNA_intronic |
| ADediting_905728 | chr2_87480876_+ | ncRNA_intronic |
| ADediting_905729 | chr2_87480877_+ | ncRNA_intronic |
| ADediting_905730 | chr2_87480898_+ | ncRNA_intronic |
| ADediting_905731 | chr2_87481186_+ | ncRNA_intronic |
| ADediting_905732 | chr2_87481197_+ | ncRNA_intronic |
| ADediting_905733 | chr2_87481210_+ | ncRNA_intronic |
| ADediting_905734 | chr2_87481216_+ | ncRNA_intronic |
| ADediting_905735 | chr2_87481234_+ | ncRNA_intronic |
| ADediting_905736 | chr2_87481368_+ | ncRNA_intronic |
| ADediting_905737 | chr2_87481930_+ | ncRNA_intronic |
| ADediting_905743 | chr2_87561356_+ | ncRNA_intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_905705 | chr2_87460249_+ | LTR | ERVL-MaLR | Name=MLT1J |
| ADediting_905727 | chr2_87480866_+ | SINE | Alu | Name=AluSx3 |
| ADediting_905728 | chr2_87480876_+ | SINE | Alu | Name=AluSx3 |
| ADediting_905729 | chr2_87480877_+ | SINE | Alu | Name=AluSx3 |
| ADediting_905730 | chr2_87480898_+ | SINE | Alu | Name=AluSx3 |
| ADediting_905731 | chr2_87481186_+ | SINE | Alu | Name=AluSx1 |
| ADediting_905732 | chr2_87481197_+ | SINE | Alu | Name=AluSx1 |
| ADediting_905733 | chr2_87481210_+ | SINE | Alu | Name=AluSx1 |
| ADediting_905734 | chr2_87481216_+ | SINE | Alu | Name=AluSx1 |
| ADediting_905735 | chr2_87481234_+ | SINE | Alu | Name=AluSx1 |
| ADediting_905736 | chr2_87481368_+ | SINE | Alu | Name=AluSx1 |
| ADediting_905737 | chr2_87481930_+ | SINE | Alu | Name=AluY |
| ADediting_905743 | chr2_87561356_+ | SINE | Alu | Name=AluJb |
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RNA A-to-I editing events in the alternative splicing sites for CYTOR |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CYTOR |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |